Multiple sequence alignment - TraesCS5A01G298100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G298100 chr5A 100.000 3905 0 0 1 3905 505537373 505533469 0.000000e+00 7212.0
1 TraesCS5A01G298100 chr5D 91.349 2358 100 46 723 3057 399961457 399959181 0.000000e+00 3129.0
2 TraesCS5A01G298100 chr5D 92.857 364 13 5 3331 3690 399957359 399957005 2.080000e-142 516.0
3 TraesCS5A01G298100 chr5D 91.536 319 13 8 1 318 399963967 399963662 1.000000e-115 427.0
4 TraesCS5A01G298100 chr5D 87.442 215 19 5 3694 3901 399957031 399956818 1.400000e-59 241.0
5 TraesCS5A01G298100 chr5D 89.032 155 10 4 577 725 399961771 399961618 6.660000e-43 185.0
6 TraesCS5A01G298100 chr5D 87.805 123 11 4 1826 1946 563725273 563725393 1.460000e-29 141.0
7 TraesCS5A01G298100 chr5D 90.667 75 7 0 1649 1723 563725075 563725149 2.480000e-17 100.0
8 TraesCS5A01G298100 chr5D 91.176 68 6 0 3134 3201 399959180 399959113 4.150000e-15 93.5
9 TraesCS5A01G298100 chr5B 85.516 2230 178 79 790 2943 479841113 479838953 0.000000e+00 2194.0
10 TraesCS5A01G298100 chr5B 83.705 718 80 23 741 1451 479859316 479858629 0.000000e+00 643.0
11 TraesCS5A01G298100 chr5B 86.364 242 12 7 3334 3566 479837364 479837135 1.080000e-60 244.0
12 TraesCS5A01G298100 chr5B 96.000 125 5 0 2933 3057 479837748 479837624 1.840000e-48 204.0
13 TraesCS5A01G298100 chr5B 89.262 149 10 3 3134 3276 479837623 479837475 8.620000e-42 182.0
14 TraesCS5A01G298100 chr5B 82.273 220 20 10 1213 1423 706154875 706155084 5.190000e-39 172.0
15 TraesCS5A01G298100 chr5B 92.453 106 5 1 3557 3659 479836742 479836637 8.740000e-32 148.0
16 TraesCS5A01G298100 chr5B 95.745 47 2 0 3287 3333 479837430 479837384 4.180000e-10 76.8
17 TraesCS5A01G298100 chr5B 93.750 48 3 0 3057 3104 121210149 121210102 5.410000e-09 73.1
18 TraesCS5A01G298100 chr2D 79.972 724 103 27 2321 3021 571883581 571882877 2.710000e-136 496.0
19 TraesCS5A01G298100 chr2D 79.825 342 31 19 1610 1942 571884227 571883915 8.500000e-52 215.0
20 TraesCS5A01G298100 chr2B 81.123 641 86 24 2329 2946 683759165 683758537 7.590000e-132 481.0
21 TraesCS5A01G298100 chr2B 78.761 339 37 25 1610 1942 683759814 683759505 1.110000e-45 195.0
22 TraesCS5A01G298100 chr2B 93.878 49 2 1 3055 3102 756555408 756555456 5.410000e-09 73.1
23 TraesCS5A01G298100 chr2A 81.271 582 78 20 2329 2888 710363986 710363414 3.580000e-120 442.0
24 TraesCS5A01G298100 chr2A 83.966 237 21 12 1195 1421 710365023 710364794 1.100000e-50 211.0
25 TraesCS5A01G298100 chr2A 79.403 335 38 16 1610 1942 710364634 710364329 1.420000e-49 207.0
26 TraesCS5A01G298100 chr2A 92.308 52 2 2 3055 3105 16965395 16965345 5.410000e-09 73.1
27 TraesCS5A01G298100 chr7A 95.833 48 1 1 3055 3101 730594586 730594539 4.180000e-10 76.8
28 TraesCS5A01G298100 chr6B 95.833 48 1 1 3055 3101 571723381 571723334 4.180000e-10 76.8
29 TraesCS5A01G298100 chr3B 92.727 55 1 3 3055 3107 109875999 109876052 4.180000e-10 76.8
30 TraesCS5A01G298100 chr3B 92.453 53 3 1 3060 3112 819299906 819299855 1.500000e-09 75.0
31 TraesCS5A01G298100 chr6D 90.909 55 4 1 3055 3108 30094423 30094477 5.410000e-09 73.1
32 TraesCS5A01G298100 chr1D 89.655 58 5 1 3055 3111 338832350 338832293 5.410000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G298100 chr5A 505533469 505537373 3904 True 7212.000000 7212 100.000000 1 3905 1 chr5A.!!$R1 3904
1 TraesCS5A01G298100 chr5D 399956818 399963967 7149 True 765.250000 3129 90.565333 1 3901 6 chr5D.!!$R1 3900
2 TraesCS5A01G298100 chr5B 479858629 479859316 687 True 643.000000 643 83.705000 741 1451 1 chr5B.!!$R2 710
3 TraesCS5A01G298100 chr5B 479836637 479841113 4476 True 508.133333 2194 90.890000 790 3659 6 chr5B.!!$R3 2869
4 TraesCS5A01G298100 chr2D 571882877 571884227 1350 True 355.500000 496 79.898500 1610 3021 2 chr2D.!!$R1 1411
5 TraesCS5A01G298100 chr2B 683758537 683759814 1277 True 338.000000 481 79.942000 1610 2946 2 chr2B.!!$R1 1336
6 TraesCS5A01G298100 chr2A 710363414 710365023 1609 True 286.666667 442 81.546667 1195 2888 3 chr2A.!!$R2 1693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 446 0.251922 AACCAGCCAGTTCATGCCAT 60.252 50.0 0.00 0.00 0.00 4.40 F
1814 3891 0.108804 ATCAATGTTGCTGCTGCTGC 60.109 50.0 22.51 22.51 40.48 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 3901 0.179153 CGTGCTCGATCTGCTCAAGA 60.179 55.0 1.0 0.0 39.94 3.02 R
3083 6492 0.032017 AGCTACTCCCTTCGTCCCAT 60.032 55.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.999679 TGATTGATGGCTTTCTATACTTTTGG 58.000 34.615 0.00 0.00 0.00 3.28
41 42 7.615365 TGATTGATGGCTTTCTATACTTTTGGT 59.385 33.333 0.00 0.00 0.00 3.67
44 45 7.630082 TGATGGCTTTCTATACTTTTGGTAGT 58.370 34.615 0.00 0.00 33.51 2.73
92 93 6.942576 AGTTACAAATGCCAGAAGAGTAATGT 59.057 34.615 0.00 0.00 0.00 2.71
107 108 5.297776 AGAGTAATGTGCATAGTTGATTGGC 59.702 40.000 0.00 0.00 0.00 4.52
166 167 6.812656 CAGCCACAAATAATGTTCAAAGCATA 59.187 34.615 0.00 0.00 41.46 3.14
171 172 9.590451 CACAAATAATGTTCAAAGCATAGGAAT 57.410 29.630 0.00 0.00 41.46 3.01
206 208 4.261447 GGGTTCATAACACAACAAGTCCAC 60.261 45.833 0.00 0.00 34.08 4.02
207 209 4.336993 GGTTCATAACACAACAAGTCCACA 59.663 41.667 0.00 0.00 0.00 4.17
208 210 5.270853 GTTCATAACACAACAAGTCCACAC 58.729 41.667 0.00 0.00 0.00 3.82
209 211 4.518249 TCATAACACAACAAGTCCACACA 58.482 39.130 0.00 0.00 0.00 3.72
210 212 4.944317 TCATAACACAACAAGTCCACACAA 59.056 37.500 0.00 0.00 0.00 3.33
211 213 3.848272 AACACAACAAGTCCACACAAG 57.152 42.857 0.00 0.00 0.00 3.16
212 214 2.790433 ACACAACAAGTCCACACAAGT 58.210 42.857 0.00 0.00 0.00 3.16
213 215 3.153919 ACACAACAAGTCCACACAAGTT 58.846 40.909 0.00 0.00 0.00 2.66
214 216 3.190535 ACACAACAAGTCCACACAAGTTC 59.809 43.478 0.00 0.00 0.00 3.01
215 217 3.190327 CACAACAAGTCCACACAAGTTCA 59.810 43.478 0.00 0.00 0.00 3.18
216 218 3.440173 ACAACAAGTCCACACAAGTTCAG 59.560 43.478 0.00 0.00 0.00 3.02
229 231 6.252015 CACACAAGTTCAGTCAAATTCAGTTG 59.748 38.462 0.00 0.00 0.00 3.16
251 253 3.412386 AGTTGCAACCAATCAGGAGTAC 58.588 45.455 25.62 0.00 41.22 2.73
252 254 2.093306 TGCAACCAATCAGGAGTACG 57.907 50.000 0.00 0.00 41.22 3.67
253 255 1.346395 TGCAACCAATCAGGAGTACGT 59.654 47.619 0.00 0.00 41.22 3.57
254 256 2.563620 TGCAACCAATCAGGAGTACGTA 59.436 45.455 0.00 0.00 41.22 3.57
255 257 3.187700 GCAACCAATCAGGAGTACGTAG 58.812 50.000 0.00 0.00 41.22 3.51
319 321 5.173774 CAAGTCTGCAACAAATGTGTACT 57.826 39.130 0.00 0.00 36.80 2.73
320 322 5.581605 CAAGTCTGCAACAAATGTGTACTT 58.418 37.500 0.00 0.00 36.80 2.24
321 323 5.424121 AGTCTGCAACAAATGTGTACTTC 57.576 39.130 0.00 0.00 36.80 3.01
322 324 5.126067 AGTCTGCAACAAATGTGTACTTCT 58.874 37.500 0.00 0.00 36.80 2.85
323 325 5.008019 AGTCTGCAACAAATGTGTACTTCTG 59.992 40.000 0.00 0.00 36.80 3.02
324 326 4.275689 TCTGCAACAAATGTGTACTTCTGG 59.724 41.667 0.00 0.00 36.80 3.86
325 327 3.951037 TGCAACAAATGTGTACTTCTGGT 59.049 39.130 0.00 0.00 36.80 4.00
326 328 4.400884 TGCAACAAATGTGTACTTCTGGTT 59.599 37.500 0.00 0.00 36.80 3.67
327 329 4.976116 GCAACAAATGTGTACTTCTGGTTC 59.024 41.667 0.00 0.00 36.80 3.62
329 331 5.048846 ACAAATGTGTACTTCTGGTTCCT 57.951 39.130 0.00 0.00 35.72 3.36
330 332 5.063880 ACAAATGTGTACTTCTGGTTCCTC 58.936 41.667 0.00 0.00 35.72 3.71
331 333 4.974645 AATGTGTACTTCTGGTTCCTCA 57.025 40.909 0.00 0.00 0.00 3.86
332 334 4.974645 ATGTGTACTTCTGGTTCCTCAA 57.025 40.909 0.00 0.00 0.00 3.02
334 336 3.709653 TGTGTACTTCTGGTTCCTCAAGT 59.290 43.478 0.00 9.64 33.63 3.16
335 337 4.202223 TGTGTACTTCTGGTTCCTCAAGTC 60.202 45.833 8.51 4.15 31.52 3.01
336 338 2.821991 ACTTCTGGTTCCTCAAGTCG 57.178 50.000 1.86 0.00 0.00 4.18
337 339 1.270358 ACTTCTGGTTCCTCAAGTCGC 60.270 52.381 1.86 0.00 0.00 5.19
338 340 0.319555 TTCTGGTTCCTCAAGTCGCG 60.320 55.000 0.00 0.00 0.00 5.87
339 341 1.738099 CTGGTTCCTCAAGTCGCGG 60.738 63.158 6.13 0.00 0.00 6.46
341 343 1.737008 GGTTCCTCAAGTCGCGGTC 60.737 63.158 6.13 0.00 0.00 4.79
342 344 2.087009 GTTCCTCAAGTCGCGGTCG 61.087 63.158 6.13 0.00 0.00 4.79
351 353 4.724697 TCGCGGTCGACGTTCGTC 62.725 66.667 9.92 14.25 46.52 4.20
353 355 3.164011 GCGGTCGACGTTCGTCAG 61.164 66.667 21.94 15.27 46.52 3.51
354 356 3.164011 CGGTCGACGTTCGTCAGC 61.164 66.667 21.94 16.77 41.35 4.26
355 357 2.254651 GGTCGACGTTCGTCAGCT 59.745 61.111 21.94 0.00 41.35 4.24
356 358 2.081212 GGTCGACGTTCGTCAGCTG 61.081 63.158 21.94 7.63 41.35 4.24
357 359 2.428569 TCGACGTTCGTCAGCTGC 60.429 61.111 21.94 3.23 41.35 5.25
358 360 2.429236 CGACGTTCGTCAGCTGCT 60.429 61.111 21.94 0.00 34.72 4.24
359 361 2.429351 CGACGTTCGTCAGCTGCTC 61.429 63.158 21.94 3.67 34.72 4.26
360 362 1.081108 GACGTTCGTCAGCTGCTCT 60.081 57.895 18.42 0.00 35.41 4.09
361 363 1.340657 GACGTTCGTCAGCTGCTCTG 61.341 60.000 18.42 0.00 44.21 3.35
362 364 2.091112 CGTTCGTCAGCTGCTCTGG 61.091 63.158 9.47 0.00 43.06 3.86
363 365 2.047844 TTCGTCAGCTGCTCTGGC 60.048 61.111 9.47 4.31 43.83 4.85
371 373 4.527583 CTGCTCTGGCGCCTCCTC 62.528 72.222 29.70 14.70 42.25 3.71
374 376 4.200283 CTCTGGCGCCTCCTCGAC 62.200 72.222 29.70 0.00 38.14 4.20
398 400 4.072088 CGGCGCCGTCTCAAACAC 62.072 66.667 39.71 0.53 34.35 3.32
399 401 3.723348 GGCGCCGTCTCAAACACC 61.723 66.667 12.58 0.00 0.00 4.16
400 402 2.665185 GCGCCGTCTCAAACACCT 60.665 61.111 0.00 0.00 0.00 4.00
401 403 2.251642 GCGCCGTCTCAAACACCTT 61.252 57.895 0.00 0.00 0.00 3.50
402 404 1.569493 CGCCGTCTCAAACACCTTG 59.431 57.895 0.00 0.00 36.25 3.61
403 405 1.841663 CGCCGTCTCAAACACCTTGG 61.842 60.000 0.00 0.00 35.56 3.61
404 406 0.818040 GCCGTCTCAAACACCTTGGT 60.818 55.000 0.00 0.00 35.56 3.67
405 407 0.944386 CCGTCTCAAACACCTTGGTG 59.056 55.000 17.34 17.34 35.56 4.17
406 408 0.307760 CGTCTCAAACACCTTGGTGC 59.692 55.000 18.67 1.12 35.56 5.01
407 409 0.668535 GTCTCAAACACCTTGGTGCC 59.331 55.000 18.67 0.00 35.56 5.01
408 410 0.257328 TCTCAAACACCTTGGTGCCA 59.743 50.000 18.67 0.89 35.56 4.92
409 411 1.110442 CTCAAACACCTTGGTGCCAA 58.890 50.000 18.67 3.43 35.56 4.52
410 412 0.820871 TCAAACACCTTGGTGCCAAC 59.179 50.000 18.67 0.00 35.56 3.77
411 413 0.534412 CAAACACCTTGGTGCCAACA 59.466 50.000 18.67 0.00 0.00 3.33
412 414 1.066573 CAAACACCTTGGTGCCAACAA 60.067 47.619 18.67 0.00 0.00 2.83
413 415 1.494960 AACACCTTGGTGCCAACAAT 58.505 45.000 18.67 0.00 0.00 2.71
414 416 1.039856 ACACCTTGGTGCCAACAATC 58.960 50.000 18.67 0.00 0.00 2.67
415 417 1.039068 CACCTTGGTGCCAACAATCA 58.961 50.000 6.88 0.00 0.00 2.57
416 418 1.000060 CACCTTGGTGCCAACAATCAG 60.000 52.381 6.88 0.00 0.00 2.90
417 419 1.331214 CCTTGGTGCCAACAATCAGT 58.669 50.000 0.00 0.00 0.00 3.41
418 420 2.158534 ACCTTGGTGCCAACAATCAGTA 60.159 45.455 0.00 0.00 0.00 2.74
419 421 3.091545 CCTTGGTGCCAACAATCAGTAT 58.908 45.455 0.00 0.00 0.00 2.12
420 422 3.511146 CCTTGGTGCCAACAATCAGTATT 59.489 43.478 0.00 0.00 0.00 1.89
421 423 4.380867 CCTTGGTGCCAACAATCAGTATTC 60.381 45.833 0.00 0.00 0.00 1.75
422 424 3.760738 TGGTGCCAACAATCAGTATTCA 58.239 40.909 0.00 0.00 0.00 2.57
423 425 3.758023 TGGTGCCAACAATCAGTATTCAG 59.242 43.478 0.00 0.00 0.00 3.02
424 426 3.758554 GGTGCCAACAATCAGTATTCAGT 59.241 43.478 0.00 0.00 0.00 3.41
425 427 4.941263 GGTGCCAACAATCAGTATTCAGTA 59.059 41.667 0.00 0.00 0.00 2.74
426 428 5.414454 GGTGCCAACAATCAGTATTCAGTAA 59.586 40.000 0.00 0.00 0.00 2.24
427 429 6.314784 GTGCCAACAATCAGTATTCAGTAAC 58.685 40.000 0.00 0.00 0.00 2.50
428 430 5.414454 TGCCAACAATCAGTATTCAGTAACC 59.586 40.000 0.00 0.00 0.00 2.85
429 431 5.414454 GCCAACAATCAGTATTCAGTAACCA 59.586 40.000 0.00 0.00 0.00 3.67
430 432 6.403636 GCCAACAATCAGTATTCAGTAACCAG 60.404 42.308 0.00 0.00 0.00 4.00
431 433 6.403636 CCAACAATCAGTATTCAGTAACCAGC 60.404 42.308 0.00 0.00 0.00 4.85
432 434 5.186198 ACAATCAGTATTCAGTAACCAGCC 58.814 41.667 0.00 0.00 0.00 4.85
433 435 5.185454 CAATCAGTATTCAGTAACCAGCCA 58.815 41.667 0.00 0.00 0.00 4.75
434 436 4.471904 TCAGTATTCAGTAACCAGCCAG 57.528 45.455 0.00 0.00 0.00 4.85
435 437 3.838317 TCAGTATTCAGTAACCAGCCAGT 59.162 43.478 0.00 0.00 0.00 4.00
436 438 4.286032 TCAGTATTCAGTAACCAGCCAGTT 59.714 41.667 0.00 0.00 0.00 3.16
437 439 4.631813 CAGTATTCAGTAACCAGCCAGTTC 59.368 45.833 0.00 0.00 0.00 3.01
438 440 3.788227 ATTCAGTAACCAGCCAGTTCA 57.212 42.857 0.00 0.00 0.00 3.18
439 441 3.788227 TTCAGTAACCAGCCAGTTCAT 57.212 42.857 0.00 0.00 0.00 2.57
440 442 3.057969 TCAGTAACCAGCCAGTTCATG 57.942 47.619 0.00 0.00 0.00 3.07
441 443 1.470098 CAGTAACCAGCCAGTTCATGC 59.530 52.381 0.00 0.00 0.00 4.06
442 444 0.811281 GTAACCAGCCAGTTCATGCC 59.189 55.000 0.00 0.00 0.00 4.40
443 445 0.403655 TAACCAGCCAGTTCATGCCA 59.596 50.000 0.00 0.00 0.00 4.92
444 446 0.251922 AACCAGCCAGTTCATGCCAT 60.252 50.000 0.00 0.00 0.00 4.40
445 447 0.682209 ACCAGCCAGTTCATGCCATC 60.682 55.000 0.00 0.00 0.00 3.51
446 448 1.389609 CCAGCCAGTTCATGCCATCC 61.390 60.000 0.00 0.00 0.00 3.51
447 449 0.681887 CAGCCAGTTCATGCCATCCA 60.682 55.000 0.00 0.00 0.00 3.41
448 450 0.682209 AGCCAGTTCATGCCATCCAC 60.682 55.000 0.00 0.00 0.00 4.02
449 451 0.966875 GCCAGTTCATGCCATCCACA 60.967 55.000 0.00 0.00 0.00 4.17
450 452 1.100510 CCAGTTCATGCCATCCACAG 58.899 55.000 0.00 0.00 0.00 3.66
451 453 1.615116 CCAGTTCATGCCATCCACAGT 60.615 52.381 0.00 0.00 0.00 3.55
452 454 2.165167 CAGTTCATGCCATCCACAGTT 58.835 47.619 0.00 0.00 0.00 3.16
453 455 2.163010 CAGTTCATGCCATCCACAGTTC 59.837 50.000 0.00 0.00 0.00 3.01
454 456 2.161855 GTTCATGCCATCCACAGTTCA 58.838 47.619 0.00 0.00 0.00 3.18
455 457 1.825090 TCATGCCATCCACAGTTCAC 58.175 50.000 0.00 0.00 0.00 3.18
456 458 1.073603 TCATGCCATCCACAGTTCACA 59.926 47.619 0.00 0.00 0.00 3.58
457 459 1.200716 CATGCCATCCACAGTTCACAC 59.799 52.381 0.00 0.00 0.00 3.82
458 460 0.884259 TGCCATCCACAGTTCACACG 60.884 55.000 0.00 0.00 0.00 4.49
459 461 0.884704 GCCATCCACAGTTCACACGT 60.885 55.000 0.00 0.00 0.00 4.49
460 462 1.148310 CCATCCACAGTTCACACGTC 58.852 55.000 0.00 0.00 0.00 4.34
461 463 0.784178 CATCCACAGTTCACACGTCG 59.216 55.000 0.00 0.00 0.00 5.12
462 464 0.671796 ATCCACAGTTCACACGTCGA 59.328 50.000 0.00 0.00 0.00 4.20
463 465 0.671796 TCCACAGTTCACACGTCGAT 59.328 50.000 0.00 0.00 0.00 3.59
464 466 1.060713 CCACAGTTCACACGTCGATC 58.939 55.000 0.00 0.00 0.00 3.69
465 467 1.060713 CACAGTTCACACGTCGATCC 58.939 55.000 0.00 0.00 0.00 3.36
466 468 0.671796 ACAGTTCACACGTCGATCCA 59.328 50.000 0.00 0.00 0.00 3.41
467 469 1.272490 ACAGTTCACACGTCGATCCAT 59.728 47.619 0.00 0.00 0.00 3.41
468 470 1.920574 CAGTTCACACGTCGATCCATC 59.079 52.381 0.00 0.00 0.00 3.51
485 487 7.588143 GATCCATCGATCGACAAATCTTATT 57.412 36.000 22.06 0.00 35.83 1.40
486 488 8.689251 GATCCATCGATCGACAAATCTTATTA 57.311 34.615 22.06 0.00 35.83 0.98
487 489 9.140286 GATCCATCGATCGACAAATCTTATTAA 57.860 33.333 22.06 0.00 35.83 1.40
488 490 8.520835 TCCATCGATCGACAAATCTTATTAAG 57.479 34.615 22.06 0.00 0.00 1.85
489 491 8.141909 TCCATCGATCGACAAATCTTATTAAGT 58.858 33.333 22.06 0.00 0.00 2.24
490 492 8.765219 CCATCGATCGACAAATCTTATTAAGTT 58.235 33.333 22.06 0.00 0.00 2.66
563 565 5.134202 TCTTGCAGAGTAGTCGATCAAAA 57.866 39.130 0.00 0.00 0.00 2.44
611 2418 2.107950 TAGCCTGAAACCAACATCCG 57.892 50.000 0.00 0.00 0.00 4.18
617 2424 2.147958 TGAAACCAACATCCGTAGCAC 58.852 47.619 0.00 0.00 0.00 4.40
620 2427 0.535335 ACCAACATCCGTAGCACGAT 59.465 50.000 9.75 0.80 46.05 3.73
636 2443 1.376942 GATGCAGCAGCTGTGGACT 60.377 57.895 23.60 0.00 42.74 3.85
649 2456 3.402186 TGGACTGCCAAAGTGAGTG 57.598 52.632 0.00 0.00 42.49 3.51
652 2464 2.171659 TGGACTGCCAAAGTGAGTGTAA 59.828 45.455 0.00 0.00 42.49 2.41
667 2479 4.158579 TGAGTGTAACGATCTTGAGCTCAT 59.841 41.667 19.04 1.77 45.86 2.90
686 2498 2.798976 TCATGCCACAACTTTGCTTC 57.201 45.000 0.00 0.00 0.00 3.86
781 2756 5.596836 AAAATTCTCACTGAAGCAAACCA 57.403 34.783 0.00 0.00 38.18 3.67
786 2761 5.596836 TCTCACTGAAGCAAACCAAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
787 2762 5.350633 TCTCACTGAAGCAAACCAAAAATG 58.649 37.500 0.00 0.00 0.00 2.32
788 2763 5.083533 TCACTGAAGCAAACCAAAAATGT 57.916 34.783 0.00 0.00 0.00 2.71
844 2824 5.174395 AGATGTGATGTTCTGTACTTCTGC 58.826 41.667 0.00 0.00 33.32 4.26
884 2866 2.523015 GCAGATGCATGACCTTTTTCG 58.477 47.619 2.46 0.00 41.59 3.46
914 2898 2.029020 CCTAGCTCAATATACAGGCGCA 60.029 50.000 10.83 0.00 0.00 6.09
990 2978 2.574006 TTGGTGCATCTTCTTGAGCT 57.426 45.000 0.00 0.00 0.00 4.09
1147 3139 2.553602 TGGCATGCAAAGTGTACAAGAG 59.446 45.455 21.36 0.00 0.00 2.85
1186 3188 2.398754 TCACTTCCCTTCCTCACTCA 57.601 50.000 0.00 0.00 0.00 3.41
1210 3212 1.454847 CTCCTCCCTCTCCCACTCG 60.455 68.421 0.00 0.00 0.00 4.18
1218 3220 1.987704 CTCTCCCACTCGCTCACTCG 61.988 65.000 0.00 0.00 0.00 4.18
1219 3221 3.691744 CTCCCACTCGCTCACTCGC 62.692 68.421 0.00 0.00 0.00 5.03
1220 3222 3.753434 CCCACTCGCTCACTCGCT 61.753 66.667 0.00 0.00 0.00 4.93
1221 3223 2.202544 CCACTCGCTCACTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
1222 3224 2.563427 CACTCGCTCACTCGCTCA 59.437 61.111 0.00 0.00 0.00 4.26
1223 3225 1.799519 CACTCGCTCACTCGCTCAC 60.800 63.158 0.00 0.00 0.00 3.51
1224 3226 1.969064 ACTCGCTCACTCGCTCACT 60.969 57.895 0.00 0.00 0.00 3.41
1225 3227 1.226267 CTCGCTCACTCGCTCACTC 60.226 63.158 0.00 0.00 0.00 3.51
1226 3228 2.575525 CGCTCACTCGCTCACTCG 60.576 66.667 0.00 0.00 0.00 4.18
1227 3229 2.878520 GCTCACTCGCTCACTCGC 60.879 66.667 0.00 0.00 0.00 5.03
1228 3230 2.874019 CTCACTCGCTCACTCGCT 59.126 61.111 0.00 0.00 0.00 4.93
1229 3231 1.226267 CTCACTCGCTCACTCGCTC 60.226 63.158 0.00 0.00 0.00 5.03
1230 3232 2.575525 CACTCGCTCACTCGCTCG 60.576 66.667 0.00 0.00 0.00 5.03
1231 3233 4.468615 ACTCGCTCACTCGCTCGC 62.469 66.667 0.00 0.00 0.00 5.03
1444 3469 4.586421 CCCCTTTTCTTTGAGCTCTTCTTT 59.414 41.667 16.19 0.00 0.00 2.52
1462 3493 0.764890 TTGCTTGTCTACCTGGCTGT 59.235 50.000 0.00 0.00 0.00 4.40
1463 3494 1.639722 TGCTTGTCTACCTGGCTGTA 58.360 50.000 0.00 0.00 0.00 2.74
1466 3497 2.093447 GCTTGTCTACCTGGCTGTATGT 60.093 50.000 0.00 0.00 0.00 2.29
1476 3507 1.275010 TGGCTGTATGTCTCGCTTCAA 59.725 47.619 0.00 0.00 0.00 2.69
1501 3540 1.338105 CGATGAACAAGTCCTCCTGCA 60.338 52.381 0.00 0.00 0.00 4.41
1592 3647 8.435982 ACAAAACCCCAATCTTCATTTATTTCA 58.564 29.630 0.00 0.00 0.00 2.69
1593 3648 8.720562 CAAAACCCCAATCTTCATTTATTTCAC 58.279 33.333 0.00 0.00 0.00 3.18
1595 3650 7.797121 ACCCCAATCTTCATTTATTTCACTT 57.203 32.000 0.00 0.00 0.00 3.16
1637 3692 7.623630 ACCCCAATCTTGATTTAATTTCCTTG 58.376 34.615 0.00 0.00 0.00 3.61
1732 3800 2.837498 CATCAAGGTATGGACGCATCA 58.163 47.619 0.00 0.00 0.00 3.07
1733 3801 2.309528 TCAAGGTATGGACGCATCAC 57.690 50.000 0.00 0.00 0.00 3.06
1735 3803 3.028130 TCAAGGTATGGACGCATCACTA 58.972 45.455 0.00 0.00 0.00 2.74
1736 3804 3.641436 TCAAGGTATGGACGCATCACTAT 59.359 43.478 0.00 0.00 0.00 2.12
1738 3806 2.563179 AGGTATGGACGCATCACTATCC 59.437 50.000 0.00 0.00 0.00 2.59
1739 3807 2.299013 GGTATGGACGCATCACTATCCA 59.701 50.000 0.00 0.00 45.12 3.41
1769 3837 2.368439 TCAAGGAATTTGGCTGATCCG 58.632 47.619 0.00 0.00 37.39 4.18
1789 3864 0.519519 TCAACTTTAACATGGCCGCG 59.480 50.000 0.00 0.00 0.00 6.46
1810 3887 1.794076 CGCTGATCAATGTTGCTGCTG 60.794 52.381 0.00 0.00 0.00 4.41
1811 3888 1.909376 CTGATCAATGTTGCTGCTGC 58.091 50.000 8.89 8.89 40.20 5.25
1812 3889 1.472878 CTGATCAATGTTGCTGCTGCT 59.527 47.619 17.00 0.00 40.48 4.24
1813 3890 1.201414 TGATCAATGTTGCTGCTGCTG 59.799 47.619 17.00 6.30 40.48 4.41
1814 3891 0.108804 ATCAATGTTGCTGCTGCTGC 60.109 50.000 22.51 22.51 40.48 5.25
1815 3892 1.176619 TCAATGTTGCTGCTGCTGCT 61.177 50.000 27.67 8.85 40.48 4.24
1816 3893 1.008875 CAATGTTGCTGCTGCTGCTG 61.009 55.000 27.67 16.73 40.48 4.41
1818 3895 1.863662 ATGTTGCTGCTGCTGCTGTC 61.864 55.000 27.67 18.64 39.81 3.51
1819 3896 2.112507 TTGCTGCTGCTGCTGTCT 59.887 55.556 27.67 0.00 39.81 3.41
1820 3897 1.527611 TTGCTGCTGCTGCTGTCTT 60.528 52.632 27.67 0.00 39.81 3.01
1821 3898 1.792118 TTGCTGCTGCTGCTGTCTTG 61.792 55.000 27.67 5.09 39.81 3.02
1822 3899 1.964891 GCTGCTGCTGCTGTCTTGA 60.965 57.895 22.10 0.00 39.81 3.02
1823 3900 1.867615 CTGCTGCTGCTGTCTTGAC 59.132 57.895 17.00 0.00 40.48 3.18
1824 3901 0.603172 CTGCTGCTGCTGTCTTGACT 60.603 55.000 17.00 0.00 40.48 3.41
1846 3923 1.139734 GAGCAGATCGAGCACGGAA 59.860 57.895 2.38 0.00 40.21 4.30
2131 4220 2.549332 GCTCAAGCTCAAGTCACCC 58.451 57.895 0.00 0.00 38.21 4.61
2132 4221 0.957888 GCTCAAGCTCAAGTCACCCC 60.958 60.000 0.00 0.00 38.21 4.95
2133 4222 0.322008 CTCAAGCTCAAGTCACCCCC 60.322 60.000 0.00 0.00 0.00 5.40
2134 4223 1.059584 TCAAGCTCAAGTCACCCCCA 61.060 55.000 0.00 0.00 0.00 4.96
2135 4224 0.607489 CAAGCTCAAGTCACCCCCAG 60.607 60.000 0.00 0.00 0.00 4.45
2370 4504 2.755103 GGAGGAAATGGACATCAACACC 59.245 50.000 0.00 0.00 0.00 4.16
2371 4505 2.420022 GAGGAAATGGACATCAACACCG 59.580 50.000 0.00 0.00 0.00 4.94
2372 4506 2.159382 GGAAATGGACATCAACACCGT 58.841 47.619 0.00 0.00 0.00 4.83
2468 4625 1.135517 GGTGAGCGTCTCTTCACTCTC 60.136 57.143 8.07 0.00 33.95 3.20
2469 4626 1.810151 GTGAGCGTCTCTTCACTCTCT 59.190 52.381 8.07 0.00 30.69 3.10
2487 4644 2.990674 CTACTCGATCCCACGCGCAG 62.991 65.000 5.73 2.42 0.00 5.18
2490 4647 3.554692 CGATCCCACGCGCAGTTC 61.555 66.667 5.73 0.00 0.00 3.01
2503 4660 1.149148 GCAGTTCCGTTCTTCTGACC 58.851 55.000 0.00 0.00 0.00 4.02
2625 4790 4.778415 CGACTCGTGGGCCGTCAG 62.778 72.222 9.49 2.49 37.94 3.51
2647 4812 1.080025 GAAGCACGGCCTTACGTCT 60.080 57.895 0.00 0.00 46.75 4.18
2819 4984 2.815647 GCAGCTACGCCACCTGAC 60.816 66.667 0.00 0.00 0.00 3.51
2850 5024 1.303309 GATCCGTTGCCATCTCAAGG 58.697 55.000 0.00 0.00 0.00 3.61
2891 5082 0.110283 TGCATTGCATCGTCGTTGTG 60.110 50.000 7.38 0.00 31.71 3.33
2906 5097 3.942748 TCGTTGTGGCCCAAGATTAATAC 59.057 43.478 0.00 0.00 32.51 1.89
2943 5137 1.001378 ACTTGTGTTTCGCTTGGATGC 60.001 47.619 0.00 0.00 0.00 3.91
3057 6466 6.949352 AAATGTATTGTGCTAGCTTGCTAT 57.051 33.333 20.64 13.20 0.00 2.97
3058 6467 5.936686 ATGTATTGTGCTAGCTTGCTATG 57.063 39.130 20.64 0.00 0.00 2.23
3059 6468 4.769688 TGTATTGTGCTAGCTTGCTATGT 58.230 39.130 20.64 7.62 0.00 2.29
3060 6469 5.912892 TGTATTGTGCTAGCTTGCTATGTA 58.087 37.500 20.64 6.73 0.00 2.29
3061 6470 5.985530 TGTATTGTGCTAGCTTGCTATGTAG 59.014 40.000 20.64 0.00 0.00 2.74
3062 6471 4.471904 TTGTGCTAGCTTGCTATGTAGT 57.528 40.909 20.64 0.00 0.00 2.73
3063 6472 3.785486 TGTGCTAGCTTGCTATGTAGTG 58.215 45.455 20.64 0.00 0.00 2.74
3064 6473 3.195610 TGTGCTAGCTTGCTATGTAGTGT 59.804 43.478 20.64 0.00 0.00 3.55
3065 6474 3.799420 GTGCTAGCTTGCTATGTAGTGTC 59.201 47.826 20.64 0.00 0.00 3.67
3066 6475 3.447229 TGCTAGCTTGCTATGTAGTGTCA 59.553 43.478 20.64 0.00 0.00 3.58
3067 6476 4.081697 TGCTAGCTTGCTATGTAGTGTCAA 60.082 41.667 20.64 0.00 0.00 3.18
3068 6477 4.268884 GCTAGCTTGCTATGTAGTGTCAAC 59.731 45.833 13.17 0.00 0.00 3.18
3069 6478 4.271696 AGCTTGCTATGTAGTGTCAACA 57.728 40.909 0.00 0.00 0.00 3.33
3070 6479 4.641396 AGCTTGCTATGTAGTGTCAACAA 58.359 39.130 0.00 0.00 0.00 2.83
3071 6480 5.063204 AGCTTGCTATGTAGTGTCAACAAA 58.937 37.500 0.00 0.00 0.00 2.83
3072 6481 5.707298 AGCTTGCTATGTAGTGTCAACAAAT 59.293 36.000 0.00 0.00 0.00 2.32
3073 6482 5.796935 GCTTGCTATGTAGTGTCAACAAATG 59.203 40.000 0.00 0.00 0.00 2.32
3074 6483 6.568462 GCTTGCTATGTAGTGTCAACAAATGT 60.568 38.462 0.00 0.00 0.00 2.71
3075 6484 6.480524 TGCTATGTAGTGTCAACAAATGTC 57.519 37.500 0.00 0.00 0.00 3.06
3076 6485 6.230472 TGCTATGTAGTGTCAACAAATGTCT 58.770 36.000 0.00 0.00 0.00 3.41
3077 6486 6.710295 TGCTATGTAGTGTCAACAAATGTCTT 59.290 34.615 0.00 0.00 0.00 3.01
3078 6487 7.875554 TGCTATGTAGTGTCAACAAATGTCTTA 59.124 33.333 0.00 0.00 0.00 2.10
3079 6488 8.169268 GCTATGTAGTGTCAACAAATGTCTTAC 58.831 37.037 0.00 0.00 0.00 2.34
3080 6489 9.203421 CTATGTAGTGTCAACAAATGTCTTACA 57.797 33.333 0.00 0.00 0.00 2.41
3081 6490 8.621532 ATGTAGTGTCAACAAATGTCTTACAT 57.378 30.769 0.00 0.00 41.31 2.29
3094 6503 5.018539 TGTCTTACATTATGGGACGAAGG 57.981 43.478 0.00 0.00 0.00 3.46
3095 6504 4.141801 TGTCTTACATTATGGGACGAAGGG 60.142 45.833 0.00 0.00 0.00 3.95
3096 6505 4.100498 GTCTTACATTATGGGACGAAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
3097 6506 4.344102 TCTTACATTATGGGACGAAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
3098 6507 2.478292 ACATTATGGGACGAAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
3099 6508 3.649843 ACATTATGGGACGAAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
3100 6509 3.641906 ACATTATGGGACGAAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
3101 6510 1.700955 TATGGGACGAAGGGAGTAGC 58.299 55.000 0.00 0.00 0.00 3.58
3102 6511 0.032017 ATGGGACGAAGGGAGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
3103 6512 0.252103 TGGGACGAAGGGAGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
3104 6513 0.460722 GGGACGAAGGGAGTAGCTTC 59.539 60.000 0.00 0.00 0.00 3.86
3105 6514 1.476477 GGACGAAGGGAGTAGCTTCT 58.524 55.000 0.00 0.00 0.00 2.85
3106 6515 2.652590 GGACGAAGGGAGTAGCTTCTA 58.347 52.381 0.00 0.00 0.00 2.10
3107 6516 3.224269 GGACGAAGGGAGTAGCTTCTAT 58.776 50.000 0.00 0.00 0.00 1.98
3108 6517 3.253921 GGACGAAGGGAGTAGCTTCTATC 59.746 52.174 0.00 0.00 0.00 2.08
3109 6518 3.224269 ACGAAGGGAGTAGCTTCTATCC 58.776 50.000 0.00 0.00 0.00 2.59
3110 6519 3.223435 CGAAGGGAGTAGCTTCTATCCA 58.777 50.000 12.53 0.00 33.24 3.41
3111 6520 3.829601 CGAAGGGAGTAGCTTCTATCCAT 59.170 47.826 12.53 3.30 33.24 3.41
3112 6521 4.321601 CGAAGGGAGTAGCTTCTATCCATG 60.322 50.000 12.53 0.00 33.24 3.66
3113 6522 4.477536 AGGGAGTAGCTTCTATCCATGA 57.522 45.455 12.53 0.00 33.24 3.07
3114 6523 4.820775 AGGGAGTAGCTTCTATCCATGAA 58.179 43.478 12.53 0.00 33.24 2.57
3115 6524 4.837860 AGGGAGTAGCTTCTATCCATGAAG 59.162 45.833 12.53 0.00 42.58 3.02
3116 6525 4.835615 GGGAGTAGCTTCTATCCATGAAGA 59.164 45.833 7.56 0.00 42.37 2.87
3117 6526 5.279256 GGGAGTAGCTTCTATCCATGAAGAC 60.279 48.000 7.56 0.00 42.37 3.01
3118 6527 5.279256 GGAGTAGCTTCTATCCATGAAGACC 60.279 48.000 7.56 0.00 42.37 3.85
3119 6528 3.742433 AGCTTCTATCCATGAAGACCG 57.258 47.619 7.56 0.00 42.37 4.79
3120 6529 3.300388 AGCTTCTATCCATGAAGACCGA 58.700 45.455 7.56 0.00 42.37 4.69
3121 6530 3.706594 AGCTTCTATCCATGAAGACCGAA 59.293 43.478 7.56 0.00 42.37 4.30
3122 6531 4.054671 GCTTCTATCCATGAAGACCGAAG 58.945 47.826 7.56 1.65 42.37 3.79
3123 6532 4.202161 GCTTCTATCCATGAAGACCGAAGA 60.202 45.833 7.56 0.00 42.37 2.87
3124 6533 5.510520 GCTTCTATCCATGAAGACCGAAGAT 60.511 44.000 7.56 0.00 42.37 2.40
3125 6534 6.485830 TTCTATCCATGAAGACCGAAGATT 57.514 37.500 0.00 0.00 0.00 2.40
3126 6535 5.847304 TCTATCCATGAAGACCGAAGATTG 58.153 41.667 0.00 0.00 0.00 2.67
3127 6536 3.981071 TCCATGAAGACCGAAGATTGT 57.019 42.857 0.00 0.00 0.00 2.71
3128 6537 3.599343 TCCATGAAGACCGAAGATTGTG 58.401 45.455 0.00 0.00 0.00 3.33
3129 6538 3.007940 TCCATGAAGACCGAAGATTGTGT 59.992 43.478 0.00 0.00 0.00 3.72
3130 6539 3.753272 CCATGAAGACCGAAGATTGTGTT 59.247 43.478 0.00 0.00 0.00 3.32
3131 6540 4.378770 CCATGAAGACCGAAGATTGTGTTG 60.379 45.833 0.00 0.00 0.00 3.33
3132 6541 3.804036 TGAAGACCGAAGATTGTGTTGT 58.196 40.909 0.00 0.00 0.00 3.32
3137 6546 2.687935 ACCGAAGATTGTGTTGTGCTTT 59.312 40.909 0.00 0.00 0.00 3.51
3149 6558 4.458989 GTGTTGTGCTTTTATCCATGGAGA 59.541 41.667 21.33 13.69 0.00 3.71
3157 6566 6.060788 GCTTTTATCCATGGAGACTGAAGAT 58.939 40.000 21.33 2.02 0.00 2.40
3210 6627 4.357142 CAATGCATTGTGATAGCCTCAAC 58.643 43.478 27.81 0.00 35.07 3.18
3268 6895 8.791675 TGTCTCTCTATCATGTCTATGTCATTC 58.208 37.037 0.00 0.00 35.73 2.67
3293 6956 9.003658 TCTTTTTATGAGGATTCTGAACTGTTC 57.996 33.333 13.49 13.49 0.00 3.18
3350 8423 3.783943 GCGAAGTATAAATGGTGTTTGCG 59.216 43.478 0.00 0.00 0.00 4.85
3417 8490 1.662044 GGCAACAAACTGCAGAGGG 59.338 57.895 23.35 11.11 44.52 4.30
3442 8515 6.745159 TGAGTGTTACTTTGTTGCTTTGTA 57.255 33.333 0.00 0.00 0.00 2.41
3474 8547 5.376947 GAAGAATTCAACCTACGACGATG 57.623 43.478 8.44 0.00 46.62 3.84
3475 8548 4.713824 AGAATTCAACCTACGACGATGA 57.286 40.909 8.44 0.00 0.00 2.92
3476 8549 4.421948 AGAATTCAACCTACGACGATGAC 58.578 43.478 8.44 0.00 0.00 3.06
3491 8564 7.618442 ACGACGATGACAAAATTACATATGAC 58.382 34.615 10.38 0.00 0.00 3.06
3668 9154 1.110442 TGTTTGCACCAACAAGGGAG 58.890 50.000 1.43 0.00 43.89 4.30
3669 9155 1.341482 TGTTTGCACCAACAAGGGAGA 60.341 47.619 1.43 0.00 43.89 3.71
3670 9156 1.963515 GTTTGCACCAACAAGGGAGAT 59.036 47.619 0.00 0.00 43.89 2.75
3671 9157 3.153919 GTTTGCACCAACAAGGGAGATA 58.846 45.455 0.00 0.00 43.89 1.98
3672 9158 3.737559 TTGCACCAACAAGGGAGATAT 57.262 42.857 0.00 0.00 43.89 1.63
3673 9159 4.853468 TTGCACCAACAAGGGAGATATA 57.147 40.909 0.00 0.00 43.89 0.86
3674 9160 4.853468 TGCACCAACAAGGGAGATATAA 57.147 40.909 0.00 0.00 43.89 0.98
3675 9161 5.186256 TGCACCAACAAGGGAGATATAAA 57.814 39.130 0.00 0.00 43.89 1.40
3676 9162 5.765510 TGCACCAACAAGGGAGATATAAAT 58.234 37.500 0.00 0.00 43.89 1.40
3677 9163 6.905736 TGCACCAACAAGGGAGATATAAATA 58.094 36.000 0.00 0.00 43.89 1.40
3678 9164 7.526041 TGCACCAACAAGGGAGATATAAATAT 58.474 34.615 0.00 0.00 43.89 1.28
3679 9165 8.664992 TGCACCAACAAGGGAGATATAAATATA 58.335 33.333 0.00 0.00 43.89 0.86
3680 9166 9.515226 GCACCAACAAGGGAGATATAAATATAA 57.485 33.333 0.00 0.00 43.89 0.98
3721 9207 8.349983 ACAAGGGAAATATAAATGTTGTATCGC 58.650 33.333 0.00 0.00 0.00 4.58
3722 9208 7.129109 AGGGAAATATAAATGTTGTATCGCG 57.871 36.000 0.00 0.00 0.00 5.87
3729 9215 4.389890 AAATGTTGTATCGCGTACCCTA 57.610 40.909 5.77 0.00 32.03 3.53
3733 9219 1.391577 TGTATCGCGTACCCTAAGCA 58.608 50.000 5.77 0.00 32.53 3.91
3734 9220 1.958579 TGTATCGCGTACCCTAAGCAT 59.041 47.619 5.77 0.00 32.53 3.79
3742 9228 3.531538 CGTACCCTAAGCATGTGACAAT 58.468 45.455 0.00 0.00 0.00 2.71
3790 9276 3.883180 GCCGGTGTGCAACGTGTT 61.883 61.111 1.90 0.00 42.39 3.32
3792 9278 2.053465 CGGTGTGCAACGTGTTCG 60.053 61.111 0.95 0.00 42.39 3.95
3795 9281 2.820037 TGTGCAACGTGTTCGGCA 60.820 55.556 0.00 0.00 42.39 5.69
3833 9319 8.823220 ATACAAACTTATAGGAAATGCAACCT 57.177 30.769 13.46 13.46 39.95 3.50
3846 9332 5.622346 AATGCAACCTCCTTAACCAAAAA 57.378 34.783 0.00 0.00 0.00 1.94
3871 9360 0.396435 ACCCTGATTCGCACAAGACA 59.604 50.000 0.00 0.00 0.00 3.41
3875 9364 2.158449 CCTGATTCGCACAAGACAAGAC 59.842 50.000 0.00 0.00 0.00 3.01
3878 9367 1.495584 TTCGCACAAGACAAGACGCC 61.496 55.000 0.00 0.00 0.00 5.68
3879 9368 1.956170 CGCACAAGACAAGACGCCT 60.956 57.895 0.00 0.00 0.00 5.52
3901 9392 2.266055 CTCTCGGGTCTGTTGCCC 59.734 66.667 0.00 0.00 42.68 5.36
3902 9393 2.525629 TCTCGGGTCTGTTGCCCA 60.526 61.111 1.07 0.00 46.40 5.36
3903 9394 2.358737 CTCGGGTCTGTTGCCCAC 60.359 66.667 1.07 0.00 46.40 4.61
3904 9395 3.164977 TCGGGTCTGTTGCCCACA 61.165 61.111 1.07 0.00 46.40 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.438676 AAAGCCATCAATCAATAGTACTGTAC 57.561 34.615 9.93 9.93 0.00 2.90
19 20 7.630082 ACTACCAAAAGTATAGAAAGCCATCA 58.370 34.615 0.00 0.00 0.00 3.07
40 41 6.970613 CCACCCAAAGCGATAAAAATTACTAC 59.029 38.462 0.00 0.00 0.00 2.73
41 42 6.660094 ACCACCCAAAGCGATAAAAATTACTA 59.340 34.615 0.00 0.00 0.00 1.82
44 45 5.986501 ACCACCCAAAGCGATAAAAATTA 57.013 34.783 0.00 0.00 0.00 1.40
92 93 1.093972 CACCGCCAATCAACTATGCA 58.906 50.000 0.00 0.00 0.00 3.96
166 167 3.814504 ACCCACATTCAGTCAATTCCT 57.185 42.857 0.00 0.00 0.00 3.36
171 172 5.240623 GTGTTATGAACCCACATTCAGTCAA 59.759 40.000 0.00 0.00 41.76 3.18
198 200 3.270027 TGACTGAACTTGTGTGGACTTG 58.730 45.455 0.00 0.00 0.00 3.16
203 205 5.163622 ACTGAATTTGACTGAACTTGTGTGG 60.164 40.000 0.00 0.00 0.00 4.17
206 208 6.554419 TCAACTGAATTTGACTGAACTTGTG 58.446 36.000 0.00 0.00 30.29 3.33
207 209 6.375455 ACTCAACTGAATTTGACTGAACTTGT 59.625 34.615 0.00 0.00 32.02 3.16
208 210 6.789262 ACTCAACTGAATTTGACTGAACTTG 58.211 36.000 0.00 0.00 32.02 3.16
209 211 7.253422 CAACTCAACTGAATTTGACTGAACTT 58.747 34.615 0.00 0.00 32.02 2.66
210 212 6.678900 GCAACTCAACTGAATTTGACTGAACT 60.679 38.462 5.34 0.00 32.02 3.01
211 213 5.456822 GCAACTCAACTGAATTTGACTGAAC 59.543 40.000 5.34 0.00 32.02 3.18
212 214 5.125257 TGCAACTCAACTGAATTTGACTGAA 59.875 36.000 5.34 0.00 32.02 3.02
213 215 4.639755 TGCAACTCAACTGAATTTGACTGA 59.360 37.500 5.34 0.00 32.02 3.41
214 216 4.923893 TGCAACTCAACTGAATTTGACTG 58.076 39.130 5.34 0.00 32.02 3.51
215 217 5.581126 TTGCAACTCAACTGAATTTGACT 57.419 34.783 0.00 0.00 32.02 3.41
229 231 2.508526 ACTCCTGATTGGTTGCAACTC 58.491 47.619 27.64 18.19 37.07 3.01
269 271 1.470979 GCTTGCATTTGCTCCATGGAG 60.471 52.381 33.73 33.73 44.56 3.86
307 309 5.048846 AGGAACCAGAAGTACACATTTGT 57.951 39.130 0.00 0.00 40.02 2.83
318 320 1.433534 GCGACTTGAGGAACCAGAAG 58.566 55.000 0.00 0.00 0.00 2.85
319 321 0.319555 CGCGACTTGAGGAACCAGAA 60.320 55.000 0.00 0.00 0.00 3.02
320 322 1.289066 CGCGACTTGAGGAACCAGA 59.711 57.895 0.00 0.00 0.00 3.86
321 323 1.738099 CCGCGACTTGAGGAACCAG 60.738 63.158 8.23 0.00 40.56 4.00
322 324 2.342279 CCGCGACTTGAGGAACCA 59.658 61.111 8.23 0.00 40.56 3.67
323 325 1.737008 GACCGCGACTTGAGGAACC 60.737 63.158 8.23 0.00 40.56 3.62
324 326 2.087009 CGACCGCGACTTGAGGAAC 61.087 63.158 8.23 0.00 40.56 3.62
325 327 2.257371 CGACCGCGACTTGAGGAA 59.743 61.111 8.23 0.00 40.56 3.36
326 328 2.670592 TCGACCGCGACTTGAGGA 60.671 61.111 8.23 0.00 42.51 3.71
334 336 4.724697 GACGAACGTCGACCGCGA 62.725 66.667 21.14 0.00 43.74 5.87
342 344 1.081108 AGAGCAGCTGACGAACGTC 60.081 57.895 20.43 18.48 44.77 4.34
354 356 4.527583 GAGGAGGCGCCAGAGCAG 62.528 72.222 31.54 0.00 39.83 4.24
357 359 4.200283 GTCGAGGAGGCGCCAGAG 62.200 72.222 31.54 14.91 40.02 3.35
381 383 4.072088 GTGTTTGAGACGGCGCCG 62.072 66.667 44.88 44.88 46.03 6.46
382 384 3.723348 GGTGTTTGAGACGGCGCC 61.723 66.667 19.07 19.07 0.00 6.53
383 385 2.251642 AAGGTGTTTGAGACGGCGC 61.252 57.895 6.90 0.00 0.00 6.53
384 386 1.569493 CAAGGTGTTTGAGACGGCG 59.431 57.895 4.80 4.80 39.21 6.46
385 387 0.818040 ACCAAGGTGTTTGAGACGGC 60.818 55.000 0.00 0.00 39.21 5.68
386 388 0.944386 CACCAAGGTGTTTGAGACGG 59.056 55.000 11.08 0.00 40.91 4.79
387 389 0.307760 GCACCAAGGTGTTTGAGACG 59.692 55.000 19.58 0.00 46.90 4.18
388 390 0.668535 GGCACCAAGGTGTTTGAGAC 59.331 55.000 19.58 2.12 46.90 3.36
389 391 0.257328 TGGCACCAAGGTGTTTGAGA 59.743 50.000 19.58 0.00 46.90 3.27
390 392 1.110442 TTGGCACCAAGGTGTTTGAG 58.890 50.000 19.58 0.00 46.90 3.02
391 393 0.820871 GTTGGCACCAAGGTGTTTGA 59.179 50.000 19.58 2.50 46.90 2.69
392 394 0.534412 TGTTGGCACCAAGGTGTTTG 59.466 50.000 19.58 0.00 46.90 2.93
393 395 1.270907 TTGTTGGCACCAAGGTGTTT 58.729 45.000 19.58 0.00 46.90 2.83
394 396 1.412343 GATTGTTGGCACCAAGGTGTT 59.588 47.619 19.58 0.00 46.90 3.32
395 397 1.039856 GATTGTTGGCACCAAGGTGT 58.960 50.000 19.58 0.00 46.90 4.16
397 399 1.331214 CTGATTGTTGGCACCAAGGT 58.669 50.000 3.32 0.00 36.52 3.50
398 400 1.331214 ACTGATTGTTGGCACCAAGG 58.669 50.000 3.32 0.00 36.52 3.61
399 401 4.218200 TGAATACTGATTGTTGGCACCAAG 59.782 41.667 3.32 0.00 36.52 3.61
400 402 4.148079 TGAATACTGATTGTTGGCACCAA 58.852 39.130 0.00 0.00 0.00 3.67
401 403 3.758023 CTGAATACTGATTGTTGGCACCA 59.242 43.478 0.00 0.00 0.00 4.17
402 404 3.758554 ACTGAATACTGATTGTTGGCACC 59.241 43.478 0.00 0.00 0.00 5.01
403 405 6.314784 GTTACTGAATACTGATTGTTGGCAC 58.685 40.000 0.00 0.00 0.00 5.01
404 406 5.414454 GGTTACTGAATACTGATTGTTGGCA 59.586 40.000 0.00 0.00 0.00 4.92
405 407 5.414454 TGGTTACTGAATACTGATTGTTGGC 59.586 40.000 0.00 0.00 0.00 4.52
406 408 6.403636 GCTGGTTACTGAATACTGATTGTTGG 60.404 42.308 0.00 0.00 0.00 3.77
407 409 6.403636 GGCTGGTTACTGAATACTGATTGTTG 60.404 42.308 0.00 0.00 0.00 3.33
408 410 5.648092 GGCTGGTTACTGAATACTGATTGTT 59.352 40.000 0.00 0.00 0.00 2.83
409 411 5.186198 GGCTGGTTACTGAATACTGATTGT 58.814 41.667 0.00 0.00 0.00 2.71
410 412 5.185454 TGGCTGGTTACTGAATACTGATTG 58.815 41.667 0.00 0.00 0.00 2.67
411 413 5.045578 ACTGGCTGGTTACTGAATACTGATT 60.046 40.000 0.00 0.00 0.00 2.57
412 414 4.471386 ACTGGCTGGTTACTGAATACTGAT 59.529 41.667 0.00 0.00 0.00 2.90
413 415 3.838317 ACTGGCTGGTTACTGAATACTGA 59.162 43.478 0.00 0.00 0.00 3.41
414 416 4.207891 ACTGGCTGGTTACTGAATACTG 57.792 45.455 0.00 0.00 0.00 2.74
415 417 4.286032 TGAACTGGCTGGTTACTGAATACT 59.714 41.667 0.00 0.00 0.00 2.12
416 418 4.575885 TGAACTGGCTGGTTACTGAATAC 58.424 43.478 0.00 0.00 0.00 1.89
417 419 4.901197 TGAACTGGCTGGTTACTGAATA 57.099 40.909 0.00 0.00 0.00 1.75
418 420 3.788227 TGAACTGGCTGGTTACTGAAT 57.212 42.857 0.00 0.00 0.00 2.57
419 421 3.411446 CATGAACTGGCTGGTTACTGAA 58.589 45.455 0.00 0.00 0.00 3.02
420 422 2.875672 GCATGAACTGGCTGGTTACTGA 60.876 50.000 0.00 0.00 0.00 3.41
421 423 1.470098 GCATGAACTGGCTGGTTACTG 59.530 52.381 0.00 0.05 0.00 2.74
422 424 1.614317 GGCATGAACTGGCTGGTTACT 60.614 52.381 0.00 0.00 46.59 2.24
423 425 0.811281 GGCATGAACTGGCTGGTTAC 59.189 55.000 0.00 0.00 46.59 2.50
424 426 3.264574 GGCATGAACTGGCTGGTTA 57.735 52.632 0.00 0.00 46.59 2.85
425 427 4.102113 GGCATGAACTGGCTGGTT 57.898 55.556 0.00 0.00 46.59 3.67
431 433 1.100510 CTGTGGATGGCATGAACTGG 58.899 55.000 3.81 0.00 0.00 4.00
432 434 1.830279 ACTGTGGATGGCATGAACTG 58.170 50.000 3.81 9.38 0.00 3.16
433 435 2.224843 TGAACTGTGGATGGCATGAACT 60.225 45.455 3.81 0.00 0.00 3.01
434 436 2.095059 GTGAACTGTGGATGGCATGAAC 60.095 50.000 3.81 3.20 0.00 3.18
435 437 2.161855 GTGAACTGTGGATGGCATGAA 58.838 47.619 3.81 0.00 0.00 2.57
436 438 1.073603 TGTGAACTGTGGATGGCATGA 59.926 47.619 3.81 0.00 0.00 3.07
437 439 1.200716 GTGTGAACTGTGGATGGCATG 59.799 52.381 3.81 0.00 0.00 4.06
438 440 1.538047 GTGTGAACTGTGGATGGCAT 58.462 50.000 0.00 0.00 0.00 4.40
439 441 0.884259 CGTGTGAACTGTGGATGGCA 60.884 55.000 0.00 0.00 0.00 4.92
440 442 0.884704 ACGTGTGAACTGTGGATGGC 60.885 55.000 0.00 0.00 0.00 4.40
441 443 1.148310 GACGTGTGAACTGTGGATGG 58.852 55.000 0.00 0.00 0.00 3.51
442 444 0.784178 CGACGTGTGAACTGTGGATG 59.216 55.000 0.00 0.00 0.00 3.51
443 445 0.671796 TCGACGTGTGAACTGTGGAT 59.328 50.000 0.00 0.00 0.00 3.41
444 446 0.671796 ATCGACGTGTGAACTGTGGA 59.328 50.000 0.00 0.00 0.00 4.02
445 447 1.060713 GATCGACGTGTGAACTGTGG 58.939 55.000 0.00 0.00 0.00 4.17
446 448 1.060713 GGATCGACGTGTGAACTGTG 58.939 55.000 0.00 0.00 0.00 3.66
447 449 0.671796 TGGATCGACGTGTGAACTGT 59.328 50.000 0.00 0.00 0.00 3.55
448 450 1.920574 GATGGATCGACGTGTGAACTG 59.079 52.381 0.00 0.00 0.00 3.16
449 451 2.279582 GATGGATCGACGTGTGAACT 57.720 50.000 0.00 0.00 0.00 3.01
461 463 7.588143 AATAAGATTTGTCGATCGATGGATC 57.412 36.000 22.50 21.26 44.63 3.36
462 464 9.144747 CTTAATAAGATTTGTCGATCGATGGAT 57.855 33.333 22.50 14.54 34.96 3.41
463 465 8.141909 ACTTAATAAGATTTGTCGATCGATGGA 58.858 33.333 22.50 3.69 0.00 3.41
464 466 8.299262 ACTTAATAAGATTTGTCGATCGATGG 57.701 34.615 22.50 0.35 0.00 3.51
501 503 9.358406 TCCTGATTGCTGTTAATTAATCATCAT 57.642 29.630 0.31 0.00 38.45 2.45
502 504 8.750515 TCCTGATTGCTGTTAATTAATCATCA 57.249 30.769 0.31 4.87 38.45 3.07
505 507 9.806203 CAATTCCTGATTGCTGTTAATTAATCA 57.194 29.630 0.31 0.41 38.79 2.57
508 510 9.806203 CATCAATTCCTGATTGCTGTTAATTAA 57.194 29.630 0.00 0.00 42.46 1.40
509 511 7.922278 GCATCAATTCCTGATTGCTGTTAATTA 59.078 33.333 5.00 0.00 42.46 1.40
510 512 6.759827 GCATCAATTCCTGATTGCTGTTAATT 59.240 34.615 5.00 0.00 42.46 1.40
511 513 6.097839 AGCATCAATTCCTGATTGCTGTTAAT 59.902 34.615 9.40 0.00 42.46 1.40
512 514 5.419788 AGCATCAATTCCTGATTGCTGTTAA 59.580 36.000 9.40 0.00 42.46 2.01
513 515 4.951715 AGCATCAATTCCTGATTGCTGTTA 59.048 37.500 9.40 0.00 42.46 2.41
514 516 3.767673 AGCATCAATTCCTGATTGCTGTT 59.232 39.130 9.40 0.00 42.46 3.16
515 517 3.362706 AGCATCAATTCCTGATTGCTGT 58.637 40.909 9.40 0.00 42.46 4.40
517 519 3.628008 TCAGCATCAATTCCTGATTGCT 58.372 40.909 0.00 0.00 42.46 3.91
518 520 4.380841 TTCAGCATCAATTCCTGATTGC 57.619 40.909 0.00 0.00 42.46 3.56
519 521 6.806751 AGAATTCAGCATCAATTCCTGATTG 58.193 36.000 8.44 0.00 42.46 2.67
542 544 4.926238 ACTTTTGATCGACTACTCTGCAAG 59.074 41.667 0.00 0.00 0.00 4.01
563 565 5.364778 TGTTACAGCATTTGACTACACACT 58.635 37.500 0.00 0.00 0.00 3.55
611 2418 1.812922 AGCTGCTGCATCGTGCTAC 60.813 57.895 18.42 4.45 45.31 3.58
617 2424 2.435410 TCCACAGCTGCTGCATCG 60.435 61.111 28.39 14.52 42.74 3.84
620 2427 2.281276 CAGTCCACAGCTGCTGCA 60.281 61.111 28.39 10.81 42.74 4.41
636 2443 2.605837 TCGTTACACTCACTTTGGCA 57.394 45.000 0.00 0.00 0.00 4.92
638 2445 4.988540 TCAAGATCGTTACACTCACTTTGG 59.011 41.667 0.00 0.00 0.00 3.28
642 2449 3.508012 AGCTCAAGATCGTTACACTCACT 59.492 43.478 0.00 0.00 0.00 3.41
643 2450 3.839293 AGCTCAAGATCGTTACACTCAC 58.161 45.455 0.00 0.00 0.00 3.51
644 2451 3.506067 TGAGCTCAAGATCGTTACACTCA 59.494 43.478 15.67 4.09 32.18 3.41
645 2452 4.098055 TGAGCTCAAGATCGTTACACTC 57.902 45.455 15.67 0.00 32.18 3.51
646 2453 4.158579 TGATGAGCTCAAGATCGTTACACT 59.841 41.667 22.50 0.00 32.18 3.55
649 2456 4.084641 GCATGATGAGCTCAAGATCGTTAC 60.085 45.833 22.50 6.31 37.44 2.50
652 2464 2.481854 GCATGATGAGCTCAAGATCGT 58.518 47.619 22.50 12.55 37.44 3.73
667 2479 1.340889 GGAAGCAAAGTTGTGGCATGA 59.659 47.619 0.00 0.00 0.00 3.07
686 2498 1.457346 GCATCCTTGTCAGTTCTGGG 58.543 55.000 0.00 0.00 0.00 4.45
781 2756 9.057089 CCTGTTCTGTTCTTCTACTACATTTTT 57.943 33.333 0.00 0.00 0.00 1.94
786 2761 6.550108 AGTTCCTGTTCTGTTCTTCTACTACA 59.450 38.462 0.00 0.00 0.00 2.74
787 2762 6.864165 CAGTTCCTGTTCTGTTCTTCTACTAC 59.136 42.308 0.00 0.00 0.00 2.73
788 2763 6.015350 CCAGTTCCTGTTCTGTTCTTCTACTA 60.015 42.308 0.00 0.00 0.00 1.82
970 2958 2.867624 AGCTCAAGAAGATGCACCAAA 58.132 42.857 0.00 0.00 0.00 3.28
990 2978 5.355630 TGCAGCTCTGTGTTTGTAAAAGTTA 59.644 36.000 0.00 0.00 0.00 2.24
1063 3054 8.746052 TCTATTCATCAACCGGTGAAAATTAT 57.254 30.769 8.52 0.00 40.50 1.28
1186 3188 2.200092 GAGAGGGAGGAGGCCGAT 59.800 66.667 0.00 0.00 0.00 4.18
1210 3212 2.878520 GCGAGTGAGCGAGTGAGC 60.879 66.667 0.00 0.00 37.41 4.26
1218 3220 2.878520 GTGAGCGAGCGAGTGAGC 60.879 66.667 0.00 0.00 37.41 4.26
1219 3221 1.226267 GAGTGAGCGAGCGAGTGAG 60.226 63.158 0.00 0.00 0.00 3.51
1220 3222 1.966451 TGAGTGAGCGAGCGAGTGA 60.966 57.895 0.00 0.00 0.00 3.41
1221 3223 1.799519 GTGAGTGAGCGAGCGAGTG 60.800 63.158 0.00 0.00 0.00 3.51
1222 3224 2.563942 GTGAGTGAGCGAGCGAGT 59.436 61.111 0.00 0.00 0.00 4.18
1223 3225 2.575525 CGTGAGTGAGCGAGCGAG 60.576 66.667 0.00 0.00 0.00 5.03
1224 3226 4.760840 GCGTGAGTGAGCGAGCGA 62.761 66.667 0.00 0.00 0.00 4.93
1250 3252 1.134250 CCTTCCTTTGGCTAGCTCTCC 60.134 57.143 15.72 0.00 0.00 3.71
1444 3469 1.639722 TACAGCCAGGTAGACAAGCA 58.360 50.000 0.00 0.00 0.00 3.91
1476 3507 2.419297 GGAGGACTTGTTCATCGCATCT 60.419 50.000 0.00 0.00 35.76 2.90
1501 3540 6.793349 GCAAAATGCAAGATCTGTTCTAGAT 58.207 36.000 0.00 0.00 45.26 1.98
1592 3647 3.004171 GTTTTTCCCCGCAAACAAAAGT 58.996 40.909 0.00 0.00 33.75 2.66
1593 3648 2.353269 GGTTTTTCCCCGCAAACAAAAG 59.647 45.455 0.00 0.00 35.01 2.27
1595 3650 2.025589 GGTTTTTCCCCGCAAACAAA 57.974 45.000 0.00 0.00 35.01 2.83
1637 3692 0.391263 CTCTGCCTGGTAACCCGAAC 60.391 60.000 0.00 0.00 0.00 3.95
1729 3797 6.946583 CCTTGATGAATTGGATGGATAGTGAT 59.053 38.462 0.00 0.00 0.00 3.06
1730 3798 6.101588 TCCTTGATGAATTGGATGGATAGTGA 59.898 38.462 0.00 0.00 0.00 3.41
1731 3799 6.301486 TCCTTGATGAATTGGATGGATAGTG 58.699 40.000 0.00 0.00 0.00 2.74
1732 3800 6.520021 TCCTTGATGAATTGGATGGATAGT 57.480 37.500 0.00 0.00 0.00 2.12
1733 3801 8.418597 AATTCCTTGATGAATTGGATGGATAG 57.581 34.615 0.00 0.00 41.99 2.08
1735 3803 7.419750 CCAAATTCCTTGATGAATTGGATGGAT 60.420 37.037 8.84 0.00 42.58 3.41
1736 3804 6.126997 CCAAATTCCTTGATGAATTGGATGGA 60.127 38.462 8.84 0.00 42.58 3.41
1738 3806 5.526111 GCCAAATTCCTTGATGAATTGGATG 59.474 40.000 5.86 5.18 42.58 3.51
1739 3807 5.427481 AGCCAAATTCCTTGATGAATTGGAT 59.573 36.000 5.86 0.00 42.58 3.41
1769 3837 1.727857 CGCGGCCATGTTAAAGTTGAC 60.728 52.381 2.24 0.00 0.00 3.18
1789 3864 1.138047 GCAGCAACATTGATCAGCGC 61.138 55.000 0.00 0.00 0.00 5.92
1810 3887 2.067766 CTCAAGAGTCAAGACAGCAGC 58.932 52.381 2.72 0.00 0.00 5.25
1811 3888 2.067766 GCTCAAGAGTCAAGACAGCAG 58.932 52.381 2.72 0.00 0.00 4.24
1812 3889 1.413812 TGCTCAAGAGTCAAGACAGCA 59.586 47.619 7.75 7.75 34.39 4.41
1813 3890 2.067766 CTGCTCAAGAGTCAAGACAGC 58.932 52.381 2.72 3.10 0.00 4.40
1814 3891 3.657015 TCTGCTCAAGAGTCAAGACAG 57.343 47.619 2.72 1.50 0.00 3.51
1815 3892 3.366781 CGATCTGCTCAAGAGTCAAGACA 60.367 47.826 2.72 0.00 38.67 3.41
1816 3893 3.119673 TCGATCTGCTCAAGAGTCAAGAC 60.120 47.826 0.00 0.00 38.67 3.01
1818 3895 3.437428 CTCGATCTGCTCAAGAGTCAAG 58.563 50.000 0.00 0.00 38.67 3.02
1819 3896 2.416566 GCTCGATCTGCTCAAGAGTCAA 60.417 50.000 0.00 0.00 38.67 3.18
1820 3897 1.133982 GCTCGATCTGCTCAAGAGTCA 59.866 52.381 0.00 0.00 38.67 3.41
1821 3898 1.133982 TGCTCGATCTGCTCAAGAGTC 59.866 52.381 8.62 0.00 38.67 3.36
1822 3899 1.135141 GTGCTCGATCTGCTCAAGAGT 60.135 52.381 8.62 0.00 38.67 3.24
1823 3900 1.558741 GTGCTCGATCTGCTCAAGAG 58.441 55.000 8.62 0.00 38.67 2.85
1824 3901 0.179153 CGTGCTCGATCTGCTCAAGA 60.179 55.000 1.00 0.00 39.94 3.02
2114 4203 0.322008 GGGGGTGACTTGAGCTTGAG 60.322 60.000 0.00 0.00 0.00 3.02
2116 4205 0.607489 CTGGGGGTGACTTGAGCTTG 60.607 60.000 0.00 0.00 0.00 4.01
2127 4216 1.380302 CTCCCTTTCACTGGGGGTG 59.620 63.158 0.00 0.00 44.67 4.61
2128 4217 2.539081 GCTCCCTTTCACTGGGGGT 61.539 63.158 0.30 0.00 46.85 4.95
2130 4219 1.001641 CTGCTCCCTTTCACTGGGG 60.002 63.158 0.00 0.00 44.67 4.96
2131 4220 1.676967 GCTGCTCCCTTTCACTGGG 60.677 63.158 0.00 0.00 45.90 4.45
2132 4221 1.676967 GGCTGCTCCCTTTCACTGG 60.677 63.158 0.00 0.00 0.00 4.00
2133 4222 0.323178 ATGGCTGCTCCCTTTCACTG 60.323 55.000 0.00 0.00 0.00 3.66
2134 4223 0.407139 AATGGCTGCTCCCTTTCACT 59.593 50.000 0.00 0.00 0.00 3.41
2135 4224 0.529378 CAATGGCTGCTCCCTTTCAC 59.471 55.000 0.00 0.00 0.00 3.18
2468 4625 2.353607 GCGCGTGGGATCGAGTAG 60.354 66.667 8.43 0.00 33.56 2.57
2469 4626 3.120979 CTGCGCGTGGGATCGAGTA 62.121 63.158 8.43 0.00 33.56 2.59
2487 4644 2.801111 GAGTTGGTCAGAAGAACGGAAC 59.199 50.000 0.00 0.00 32.76 3.62
2490 4647 1.344763 AGGAGTTGGTCAGAAGAACGG 59.655 52.381 0.00 0.00 32.76 4.44
2558 4723 3.960237 CGTGTACCGGTGCACAAT 58.040 55.556 41.75 10.08 44.72 2.71
2641 4806 3.142838 GGCCTGCCGGTAGACGTA 61.143 66.667 22.43 0.00 42.24 3.57
2819 4984 0.744414 AACGGATCAATGGAGGCACG 60.744 55.000 0.00 0.00 0.00 5.34
2850 5024 6.094048 TGCATTGCACTCTAATTTAAGAGGTC 59.906 38.462 7.38 2.47 46.11 3.85
2888 5079 2.506231 TCCGTATTAATCTTGGGCCACA 59.494 45.455 5.23 0.00 0.00 4.17
2891 5082 2.140717 CGTCCGTATTAATCTTGGGCC 58.859 52.381 0.00 0.00 0.00 5.80
2906 5097 0.526662 AGTAGAAGGAGCAACGTCCG 59.473 55.000 0.00 0.00 42.05 4.79
2943 5137 5.725110 AAGTTGATAGAAAGTAGCATGCG 57.275 39.130 13.01 0.00 0.00 4.73
3057 6466 8.445275 AATGTAAGACATTTGTTGACACTACA 57.555 30.769 0.00 0.00 45.80 2.74
3060 6469 8.514594 CCATAATGTAAGACATTTGTTGACACT 58.485 33.333 9.92 0.00 45.80 3.55
3061 6470 7.754924 CCCATAATGTAAGACATTTGTTGACAC 59.245 37.037 9.92 0.00 45.80 3.67
3062 6471 7.667635 TCCCATAATGTAAGACATTTGTTGACA 59.332 33.333 9.92 0.00 45.80 3.58
3063 6472 7.968405 GTCCCATAATGTAAGACATTTGTTGAC 59.032 37.037 9.92 8.74 45.80 3.18
3064 6473 7.148323 CGTCCCATAATGTAAGACATTTGTTGA 60.148 37.037 9.92 1.53 45.80 3.18
3065 6474 6.966632 CGTCCCATAATGTAAGACATTTGTTG 59.033 38.462 9.92 6.44 45.80 3.33
3066 6475 6.882140 TCGTCCCATAATGTAAGACATTTGTT 59.118 34.615 9.92 0.00 45.80 2.83
3067 6476 6.411376 TCGTCCCATAATGTAAGACATTTGT 58.589 36.000 9.92 0.00 45.80 2.83
3068 6477 6.918892 TCGTCCCATAATGTAAGACATTTG 57.081 37.500 9.92 8.25 45.80 2.32
3069 6478 6.542370 CCTTCGTCCCATAATGTAAGACATTT 59.458 38.462 9.92 0.00 45.80 2.32
3071 6480 5.454755 CCCTTCGTCCCATAATGTAAGACAT 60.455 44.000 0.00 0.00 41.31 3.06
3072 6481 4.141801 CCCTTCGTCCCATAATGTAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
3073 6482 4.100498 TCCCTTCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
3074 6483 4.291792 TCCCTTCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
3075 6484 4.101119 ACTCCCTTCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
3076 6485 4.035112 ACTCCCTTCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
3077 6486 3.649843 ACTCCCTTCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
3078 6487 2.478292 ACTCCCTTCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
3079 6488 3.555168 GCTACTCCCTTCGTCCCATAATG 60.555 52.174 0.00 0.00 0.00 1.90
3080 6489 2.633481 GCTACTCCCTTCGTCCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
3081 6490 2.037144 GCTACTCCCTTCGTCCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
3082 6491 1.217183 AGCTACTCCCTTCGTCCCATA 59.783 52.381 0.00 0.00 0.00 2.74
3083 6492 0.032017 AGCTACTCCCTTCGTCCCAT 60.032 55.000 0.00 0.00 0.00 4.00
3084 6493 0.252103 AAGCTACTCCCTTCGTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
3085 6494 0.460722 GAAGCTACTCCCTTCGTCCC 59.539 60.000 0.00 0.00 30.55 4.46
3086 6495 1.476477 AGAAGCTACTCCCTTCGTCC 58.524 55.000 0.00 0.00 42.63 4.79
3087 6496 3.253921 GGATAGAAGCTACTCCCTTCGTC 59.746 52.174 0.00 0.00 42.63 4.20
3088 6497 3.224269 GGATAGAAGCTACTCCCTTCGT 58.776 50.000 0.00 0.00 42.63 3.85
3089 6498 3.223435 TGGATAGAAGCTACTCCCTTCG 58.777 50.000 0.00 0.00 42.63 3.79
3090 6499 4.835615 TCATGGATAGAAGCTACTCCCTTC 59.164 45.833 0.00 0.00 39.13 3.46
3091 6500 4.820775 TCATGGATAGAAGCTACTCCCTT 58.179 43.478 0.00 0.00 0.00 3.95
3092 6501 4.477536 TCATGGATAGAAGCTACTCCCT 57.522 45.455 0.00 0.00 0.00 4.20
3093 6502 4.835615 TCTTCATGGATAGAAGCTACTCCC 59.164 45.833 0.00 0.00 41.68 4.30
3094 6503 5.279256 GGTCTTCATGGATAGAAGCTACTCC 60.279 48.000 0.00 0.00 41.68 3.85
3095 6504 5.563867 CGGTCTTCATGGATAGAAGCTACTC 60.564 48.000 0.00 0.00 41.68 2.59
3096 6505 4.279671 CGGTCTTCATGGATAGAAGCTACT 59.720 45.833 0.00 0.00 41.68 2.57
3097 6506 4.278669 TCGGTCTTCATGGATAGAAGCTAC 59.721 45.833 0.00 0.00 41.68 3.58
3098 6507 4.470602 TCGGTCTTCATGGATAGAAGCTA 58.529 43.478 0.00 0.00 41.68 3.32
3099 6508 3.300388 TCGGTCTTCATGGATAGAAGCT 58.700 45.455 0.00 0.00 41.68 3.74
3100 6509 3.735237 TCGGTCTTCATGGATAGAAGC 57.265 47.619 0.00 0.00 41.68 3.86
3101 6510 5.521906 TCTTCGGTCTTCATGGATAGAAG 57.478 43.478 0.00 3.53 42.94 2.85
3102 6511 6.127054 ACAATCTTCGGTCTTCATGGATAGAA 60.127 38.462 0.00 0.00 0.00 2.10
3103 6512 5.363868 ACAATCTTCGGTCTTCATGGATAGA 59.636 40.000 0.00 0.00 0.00 1.98
3104 6513 5.464722 CACAATCTTCGGTCTTCATGGATAG 59.535 44.000 0.00 0.00 0.00 2.08
3105 6514 5.104941 ACACAATCTTCGGTCTTCATGGATA 60.105 40.000 0.00 0.00 0.00 2.59
3106 6515 4.194640 CACAATCTTCGGTCTTCATGGAT 58.805 43.478 0.00 0.00 0.00 3.41
3107 6516 3.007940 ACACAATCTTCGGTCTTCATGGA 59.992 43.478 0.00 0.00 0.00 3.41
3108 6517 3.338249 ACACAATCTTCGGTCTTCATGG 58.662 45.455 0.00 0.00 0.00 3.66
3109 6518 4.214119 ACAACACAATCTTCGGTCTTCATG 59.786 41.667 0.00 0.00 0.00 3.07
3110 6519 4.214119 CACAACACAATCTTCGGTCTTCAT 59.786 41.667 0.00 0.00 0.00 2.57
3111 6520 3.559655 CACAACACAATCTTCGGTCTTCA 59.440 43.478 0.00 0.00 0.00 3.02
3112 6521 3.607078 GCACAACACAATCTTCGGTCTTC 60.607 47.826 0.00 0.00 0.00 2.87
3113 6522 2.290641 GCACAACACAATCTTCGGTCTT 59.709 45.455 0.00 0.00 0.00 3.01
3114 6523 1.873591 GCACAACACAATCTTCGGTCT 59.126 47.619 0.00 0.00 0.00 3.85
3115 6524 1.873591 AGCACAACACAATCTTCGGTC 59.126 47.619 0.00 0.00 0.00 4.79
3116 6525 1.967319 AGCACAACACAATCTTCGGT 58.033 45.000 0.00 0.00 0.00 4.69
3117 6526 3.354089 AAAGCACAACACAATCTTCGG 57.646 42.857 0.00 0.00 0.00 4.30
3118 6527 5.569059 GGATAAAAGCACAACACAATCTTCG 59.431 40.000 0.00 0.00 0.00 3.79
3119 6528 6.446318 TGGATAAAAGCACAACACAATCTTC 58.554 36.000 0.00 0.00 0.00 2.87
3120 6529 6.403866 TGGATAAAAGCACAACACAATCTT 57.596 33.333 0.00 0.00 0.00 2.40
3121 6530 6.392354 CATGGATAAAAGCACAACACAATCT 58.608 36.000 0.00 0.00 0.00 2.40
3122 6531 5.577945 CCATGGATAAAAGCACAACACAATC 59.422 40.000 5.56 0.00 0.00 2.67
3123 6532 5.245751 TCCATGGATAAAAGCACAACACAAT 59.754 36.000 11.44 0.00 0.00 2.71
3124 6533 4.586421 TCCATGGATAAAAGCACAACACAA 59.414 37.500 11.44 0.00 0.00 3.33
3125 6534 4.148079 TCCATGGATAAAAGCACAACACA 58.852 39.130 11.44 0.00 0.00 3.72
3126 6535 4.458989 TCTCCATGGATAAAAGCACAACAC 59.541 41.667 16.63 0.00 0.00 3.32
3127 6536 4.458989 GTCTCCATGGATAAAAGCACAACA 59.541 41.667 16.63 0.00 0.00 3.33
3128 6537 4.702131 AGTCTCCATGGATAAAAGCACAAC 59.298 41.667 16.63 0.00 0.00 3.32
3129 6538 4.701651 CAGTCTCCATGGATAAAAGCACAA 59.298 41.667 16.63 0.00 0.00 3.33
3130 6539 4.019411 TCAGTCTCCATGGATAAAAGCACA 60.019 41.667 16.63 0.00 0.00 4.57
3131 6540 4.517285 TCAGTCTCCATGGATAAAAGCAC 58.483 43.478 16.63 3.80 0.00 4.40
3132 6541 4.842531 TCAGTCTCCATGGATAAAAGCA 57.157 40.909 16.63 0.00 0.00 3.91
3137 6546 6.070021 ACACAATCTTCAGTCTCCATGGATAA 60.070 38.462 16.63 3.61 0.00 1.75
3149 6558 4.989279 AAAGCACAACACAATCTTCAGT 57.011 36.364 0.00 0.00 0.00 3.41
3157 6566 6.980593 AGCATTCTATAAAAGCACAACACAA 58.019 32.000 0.00 0.00 0.00 3.33
3205 6622 7.702348 TCACATCTTCATATTCTACACGTTGAG 59.298 37.037 0.00 0.00 0.00 3.02
3210 6627 8.078596 TGAGATCACATCTTCATATTCTACACG 58.921 37.037 0.00 0.00 40.38 4.49
3268 6895 9.007901 AGAACAGTTCAGAATCCTCATAAAAAG 57.992 33.333 15.85 0.00 0.00 2.27
3273 6900 7.962995 ACTAGAACAGTTCAGAATCCTCATA 57.037 36.000 15.85 0.00 31.59 2.15
3293 6956 3.662247 ACTTCCTGGTTCGTGAACTAG 57.338 47.619 16.50 16.50 45.75 2.57
3417 8490 5.861787 ACAAAGCAACAAAGTAACACTCAAC 59.138 36.000 0.00 0.00 0.00 3.18
3442 8515 8.512138 CGTAGGTTGAATTCTTCCTAATTTTGT 58.488 33.333 21.69 5.42 34.85 2.83
3470 8543 9.734620 AAATGGTCATATGTAATTTTGTCATCG 57.265 29.630 1.90 0.00 0.00 3.84
3474 8547 9.853555 TGTGAAATGGTCATATGTAATTTTGTC 57.146 29.630 1.90 4.20 38.90 3.18
3491 8564 2.102925 GGGCATATGGGTTGTGAAATGG 59.897 50.000 4.56 0.00 0.00 3.16
3689 9175 9.814899 CAACATTTATATTTCCCTTGTTGCATA 57.185 29.630 0.00 0.00 36.97 3.14
3690 9176 8.320617 ACAACATTTATATTTCCCTTGTTGCAT 58.679 29.630 11.55 0.00 43.72 3.96
3691 9177 7.675062 ACAACATTTATATTTCCCTTGTTGCA 58.325 30.769 11.55 0.00 43.72 4.08
3692 9178 9.816354 ATACAACATTTATATTTCCCTTGTTGC 57.184 29.630 11.55 0.00 43.72 4.17
3695 9181 8.349983 GCGATACAACATTTATATTTCCCTTGT 58.650 33.333 0.00 0.00 0.00 3.16
3696 9182 7.533900 CGCGATACAACATTTATATTTCCCTTG 59.466 37.037 0.00 0.00 0.00 3.61
3697 9183 7.227910 ACGCGATACAACATTTATATTTCCCTT 59.772 33.333 15.93 0.00 0.00 3.95
3698 9184 6.708949 ACGCGATACAACATTTATATTTCCCT 59.291 34.615 15.93 0.00 0.00 4.20
3699 9185 6.894828 ACGCGATACAACATTTATATTTCCC 58.105 36.000 15.93 0.00 0.00 3.97
3700 9186 7.953710 GGTACGCGATACAACATTTATATTTCC 59.046 37.037 15.93 0.00 35.23 3.13
3701 9187 7.953710 GGGTACGCGATACAACATTTATATTTC 59.046 37.037 15.93 0.00 35.23 2.17
3720 9206 1.287425 GTCACATGCTTAGGGTACGC 58.713 55.000 0.77 0.77 0.00 4.42
3721 9207 2.665649 TGTCACATGCTTAGGGTACG 57.334 50.000 0.00 0.00 0.00 3.67
3722 9208 3.627577 CCATTGTCACATGCTTAGGGTAC 59.372 47.826 0.00 0.00 0.00 3.34
3729 9215 1.597797 CCGGCCATTGTCACATGCTT 61.598 55.000 2.24 0.00 0.00 3.91
3733 9219 1.378514 GACCCGGCCATTGTCACAT 60.379 57.895 2.24 0.00 0.00 3.21
3734 9220 2.033448 GACCCGGCCATTGTCACA 59.967 61.111 2.24 0.00 0.00 3.58
3771 9257 4.312231 CACGTTGCACACCGGCAG 62.312 66.667 0.00 0.00 45.88 4.85
3775 9261 2.053465 CGAACACGTTGCACACCG 60.053 61.111 0.00 0.00 0.00 4.94
3792 9278 1.202394 TGTATTTTCATGCGGCATGCC 60.202 47.619 32.60 27.67 45.60 4.40
3795 9281 4.454728 AGTTTGTATTTTCATGCGGCAT 57.545 36.364 10.23 10.23 0.00 4.40
3846 9332 2.028130 TGTGCGAATCAGGGTGTTTTT 58.972 42.857 0.00 0.00 0.00 1.94
3871 9360 1.587054 CGAGAGGTCAAGGCGTCTT 59.413 57.895 0.00 0.00 34.26 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.