Multiple sequence alignment - TraesCS5A01G298000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G298000 chr5A 100.000 4870 0 0 1 4870 505506178 505511047 0.000000e+00 8994
1 TraesCS5A01G298000 chr5A 99.099 111 1 0 2556 2666 383832129 383832239 2.970000e-47 200
2 TraesCS5A01G298000 chr5A 99.091 110 1 0 2553 2662 591434998 591434889 1.070000e-46 198
3 TraesCS5A01G298000 chr5A 92.248 129 9 1 2540 2667 299768334 299768206 1.080000e-41 182
4 TraesCS5A01G298000 chr5D 90.547 2613 130 44 2 2559 399948958 399951508 0.000000e+00 3349
5 TraesCS5A01G298000 chr5D 92.273 1566 92 12 2660 4201 399951504 399953064 0.000000e+00 2194
6 TraesCS5A01G298000 chr5D 92.366 262 12 4 4609 4870 399953773 399954026 2.770000e-97 366
7 TraesCS5A01G298000 chr5D 86.082 194 7 7 4418 4611 399953142 399953315 1.790000e-44 191
8 TraesCS5A01G298000 chr5D 96.825 63 2 0 4362 4424 399953062 399953124 6.670000e-19 106
9 TraesCS5A01G298000 chr5B 92.770 1549 92 9 2660 4198 479832078 479833616 0.000000e+00 2222
10 TraesCS5A01G298000 chr5B 86.703 1113 67 35 772 1859 479830370 479831426 0.000000e+00 1160
11 TraesCS5A01G298000 chr5B 94.258 714 28 5 1 707 479829240 479829947 0.000000e+00 1079
12 TraesCS5A01G298000 chr5B 93.228 694 39 5 1869 2559 479831394 479832082 0.000000e+00 1014
13 TraesCS5A01G298000 chr5B 85.300 517 46 16 4363 4870 479833618 479834113 1.560000e-139 507
14 TraesCS5A01G298000 chr7D 85.867 375 42 6 4434 4798 52378157 52378530 5.910000e-104 388
15 TraesCS5A01G298000 chr7D 97.458 118 1 2 2554 2669 419562442 419562325 2.970000e-47 200
16 TraesCS5A01G298000 chr6B 98.324 179 2 1 4195 4373 17407640 17407817 3.660000e-81 313
17 TraesCS5A01G298000 chr6B 100.000 166 0 0 4199 4364 184886053 184886218 1.700000e-79 307
18 TraesCS5A01G298000 chr2B 100.000 167 0 0 4199 4365 671595320 671595486 4.730000e-80 309
19 TraesCS5A01G298000 chr1A 100.000 166 0 0 4199 4364 566682347 566682182 1.700000e-79 307
20 TraesCS5A01G298000 chr3B 96.386 166 6 0 4199 4364 166528817 166528652 1.730000e-69 274
21 TraesCS5A01G298000 chr1B 94.969 159 8 0 4201 4359 664617421 664617579 2.910000e-62 250
22 TraesCS5A01G298000 chr4A 90.000 190 10 3 4187 4367 654223425 654223236 2.270000e-58 237
23 TraesCS5A01G298000 chr4A 90.000 190 10 3 4187 4367 654264648 654264459 2.270000e-58 237
24 TraesCS5A01G298000 chr4A 90.000 190 10 3 4187 4367 654306383 654306194 2.270000e-58 237
25 TraesCS5A01G298000 chr2A 98.276 116 2 0 2556 2671 674047068 674046953 2.300000e-48 204
26 TraesCS5A01G298000 chr2A 99.091 110 1 0 2556 2665 763687569 763687460 1.070000e-46 198
27 TraesCS5A01G298000 chr7A 97.436 117 1 2 2556 2670 25411110 25410994 1.070000e-46 198
28 TraesCS5A01G298000 chr3A 96.610 118 3 1 2549 2665 466792339 466792456 1.380000e-45 195
29 TraesCS5A01G298000 chr6A 95.763 118 5 0 2553 2670 20748398 20748515 1.790000e-44 191
30 TraesCS5A01G298000 chr3D 86.503 163 21 1 4199 4360 22226253 22226415 1.390000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G298000 chr5A 505506178 505511047 4869 False 8994.0 8994 100.0000 1 4870 1 chr5A.!!$F2 4869
1 TraesCS5A01G298000 chr5D 399948958 399954026 5068 False 1241.2 3349 91.6186 2 4870 5 chr5D.!!$F1 4868
2 TraesCS5A01G298000 chr5B 479829240 479834113 4873 False 1196.4 2222 90.4518 1 4870 5 chr5B.!!$F1 4869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 398 1.154197 GAAGGTTGTAGTTGGTCCGC 58.846 55.0 0.00 0.0 0.00 5.54 F
1919 2392 0.034896 CAGTTACTGGTGCTTCCCGT 59.965 55.0 4.14 0.0 37.42 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2282 2755 0.108567 GCCTCTCTCGACCTCCAAAC 60.109 60.0 0.0 0.00 0.0 2.93 R
3877 4361 0.034198 TTCTCACACCGCGGAAATGA 59.966 50.0 35.9 27.63 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.112709 GTCGTCAAGGCGCTGTCC 61.113 66.667 7.64 0.00 0.00 4.02
133 134 3.128349 GCTCCTAACACAACGACTTCAA 58.872 45.455 0.00 0.00 0.00 2.69
135 136 4.552184 GCTCCTAACACAACGACTTCAAAC 60.552 45.833 0.00 0.00 0.00 2.93
151 152 3.537206 AACGCCTGACCTGTCCAGC 62.537 63.158 0.00 0.00 0.00 4.85
240 255 2.401583 TACCGAGAGTACCGTTGCTA 57.598 50.000 0.00 0.00 0.00 3.49
294 309 1.201414 TGATGTGCTCTTGCTGCATTG 59.799 47.619 1.84 0.00 42.69 2.82
308 323 1.594194 GCATTGGTTGGCGATCACCA 61.594 55.000 0.00 0.00 38.16 4.17
318 333 3.664107 TGGCGATCACCATAATAAGCTC 58.336 45.455 0.00 0.00 33.75 4.09
335 352 3.567397 AGCTCTGTTCTGGGTCGTATAT 58.433 45.455 0.00 0.00 0.00 0.86
336 353 4.726583 AGCTCTGTTCTGGGTCGTATATA 58.273 43.478 0.00 0.00 0.00 0.86
345 362 6.451064 TCTGGGTCGTATATATATGCTGTG 57.549 41.667 5.44 0.00 0.00 3.66
348 365 5.949952 TGGGTCGTATATATATGCTGTGACT 59.050 40.000 5.44 0.00 0.00 3.41
379 398 1.154197 GAAGGTTGTAGTTGGTCCGC 58.846 55.000 0.00 0.00 0.00 5.54
467 486 3.118920 TGAACTCGAAGTTGGTGTGAGAA 60.119 43.478 5.20 0.00 38.80 2.87
473 492 3.490933 CGAAGTTGGTGTGAGAAGTGAGA 60.491 47.826 0.00 0.00 0.00 3.27
584 610 2.159379 GGTAGGCAATTTTCCGCAGAAG 60.159 50.000 0.00 0.00 32.35 2.85
656 682 3.434319 CCGTGCACCTGTGATGCC 61.434 66.667 12.15 0.00 42.69 4.40
723 752 6.183359 CGTAAATTGAATTTGGCAGCTTGTAC 60.183 38.462 13.08 0.00 33.82 2.90
725 754 3.921119 TGAATTTGGCAGCTTGTACTG 57.079 42.857 0.00 0.00 40.80 2.74
726 755 3.221771 TGAATTTGGCAGCTTGTACTGT 58.778 40.909 0.00 0.00 39.96 3.55
728 757 3.648339 ATTTGGCAGCTTGTACTGTTG 57.352 42.857 0.00 0.00 39.96 3.33
729 758 1.317613 TTGGCAGCTTGTACTGTTGG 58.682 50.000 0.00 0.00 39.96 3.77
754 1162 5.025986 TCGCCAAAATAAGAAGTTCGTTC 57.974 39.130 0.00 0.00 35.08 3.95
762 1170 2.795175 AGAAGTTCGTTCTTCGCAGA 57.205 45.000 13.33 0.00 43.54 4.26
763 1171 3.093717 AGAAGTTCGTTCTTCGCAGAA 57.906 42.857 13.33 0.00 43.54 3.02
764 1172 3.454375 AGAAGTTCGTTCTTCGCAGAAA 58.546 40.909 0.00 0.00 43.54 2.52
765 1173 3.869246 AGAAGTTCGTTCTTCGCAGAAAA 59.131 39.130 0.00 0.00 43.54 2.29
766 1174 4.331717 AGAAGTTCGTTCTTCGCAGAAAAA 59.668 37.500 0.00 0.00 43.54 1.94
790 1198 1.214367 TCGTTTGGAGTTCGAACTGC 58.786 50.000 34.76 34.76 46.18 4.40
824 1232 2.406452 CTTTGGTCTGGTTGCCACGC 62.406 60.000 0.00 0.00 34.02 5.34
843 1251 3.022287 GTGAACACCACACCGCTG 58.978 61.111 0.00 0.00 45.03 5.18
867 1290 4.473520 CCGAGCCAACCTGCCGAT 62.474 66.667 0.00 0.00 0.00 4.18
868 1291 2.892425 CGAGCCAACCTGCCGATC 60.892 66.667 0.00 0.00 0.00 3.69
869 1292 2.514824 GAGCCAACCTGCCGATCC 60.515 66.667 0.00 0.00 0.00 3.36
870 1293 4.473520 AGCCAACCTGCCGATCCG 62.474 66.667 0.00 0.00 0.00 4.18
950 1375 1.846439 CCTCTCTCTCTCTCTCCCACT 59.154 57.143 0.00 0.00 0.00 4.00
1009 1451 1.750780 AGCGGCGAGATGAGAGTCA 60.751 57.895 12.98 0.00 0.00 3.41
1161 1612 2.487428 CTCTGTGCGTCCTCTCCG 59.513 66.667 0.00 0.00 0.00 4.63
1198 1649 3.702048 CCCCCGTTCCGCTCTTCA 61.702 66.667 0.00 0.00 0.00 3.02
1246 1697 4.172505 GCTCACTCACTCTGTATCTGTTG 58.827 47.826 0.00 0.00 0.00 3.33
1247 1698 4.321601 GCTCACTCACTCTGTATCTGTTGT 60.322 45.833 0.00 0.00 0.00 3.32
1282 1733 4.487804 CCCCTCTTTCTCTAGATGATCCA 58.512 47.826 0.00 0.00 0.00 3.41
1393 1844 2.457778 GCGCGTCTCTCTCGTCTCT 61.458 63.158 8.43 0.00 0.00 3.10
1440 1891 0.605589 CTGTGACCTCCCTGTCTGAC 59.394 60.000 0.00 0.00 36.21 3.51
1452 1903 3.749064 TCTGACGGTCGGAGCTGC 61.749 66.667 15.51 0.00 0.00 5.25
1474 1925 1.597663 GTTTCGTCTGTTCCCTGTGTG 59.402 52.381 0.00 0.00 0.00 3.82
1554 2005 3.319122 GGTGAGTTGAGCATTTTGTTCCT 59.681 43.478 0.00 0.00 0.00 3.36
1609 2064 2.599659 GCTTTTGCAGAGCATGTTACC 58.400 47.619 16.54 0.00 46.58 2.85
1642 2100 8.887717 GTGAAAATAGCATCAGTAACTTCATCT 58.112 33.333 0.00 0.00 0.00 2.90
1649 2107 5.557893 GCATCAGTAACTTCATCTCGATTGC 60.558 44.000 0.00 0.00 0.00 3.56
1684 2142 3.376347 GCGTTGAACAATGCGCTAA 57.624 47.368 9.73 0.00 45.48 3.09
1699 2171 2.097629 GCGCTAAGAATGGGGAGTTTTC 59.902 50.000 0.00 0.00 0.00 2.29
1754 2226 9.173021 TGAGTTTTCAGTTTTTCAGATCAACTA 57.827 29.630 0.00 0.00 0.00 2.24
1771 2244 2.298610 ACTACTAGCTATGTCGCAGCA 58.701 47.619 0.00 0.00 41.66 4.41
1800 2273 3.876914 CAGTTGTTCTTGCCAGTAGACAA 59.123 43.478 0.00 0.00 0.00 3.18
1801 2274 4.516698 CAGTTGTTCTTGCCAGTAGACAAT 59.483 41.667 7.16 0.00 0.00 2.71
1838 2311 7.306574 GCTTCATTTTGTGGCTTTAGTTTGTAC 60.307 37.037 0.00 0.00 0.00 2.90
1844 2317 5.616270 TGTGGCTTTAGTTTGTACTGATCA 58.384 37.500 0.00 0.00 35.78 2.92
1846 2319 6.149308 TGTGGCTTTAGTTTGTACTGATCATG 59.851 38.462 0.00 0.00 35.78 3.07
1851 2324 8.066595 GCTTTAGTTTGTACTGATCATGCTATG 58.933 37.037 0.00 0.00 35.78 2.23
1919 2392 0.034896 CAGTTACTGGTGCTTCCCGT 59.965 55.000 4.14 0.00 37.42 5.28
1986 2459 2.498167 CCTATGAGGTATTGGCTGCAC 58.502 52.381 0.50 0.00 0.00 4.57
1997 2470 2.512485 TGGCTGCACAATGTTTTCAG 57.488 45.000 0.50 3.61 0.00 3.02
2029 2502 4.319549 GCCTGTTTGTTTGCTACTACTGTC 60.320 45.833 0.00 0.00 0.00 3.51
2231 2704 7.692460 TCATCTTCATGCTACTTTGAATTGT 57.308 32.000 0.00 0.00 31.83 2.71
2233 2706 7.391275 TCATCTTCATGCTACTTTGAATTGTCA 59.609 33.333 0.00 0.00 31.83 3.58
2282 2755 2.125350 GAGTCTGGCCAGCTTCGG 60.125 66.667 28.91 4.17 0.00 4.30
2334 2807 3.525609 TCCCTTGTATGAACCCAAGCATA 59.474 43.478 0.00 0.00 37.36 3.14
2335 2808 4.167892 TCCCTTGTATGAACCCAAGCATAT 59.832 41.667 0.00 0.00 37.36 1.78
2336 2809 4.520492 CCCTTGTATGAACCCAAGCATATC 59.480 45.833 0.00 0.00 37.36 1.63
2337 2810 5.380043 CCTTGTATGAACCCAAGCATATCT 58.620 41.667 0.00 0.00 37.36 1.98
2338 2811 6.465751 CCCTTGTATGAACCCAAGCATATCTA 60.466 42.308 0.00 0.00 37.36 1.98
2339 2812 7.170965 CCTTGTATGAACCCAAGCATATCTAT 58.829 38.462 0.00 0.00 37.36 1.98
2376 2849 9.823647 CAATATTTCTTACTAGAAGAGCCTTGA 57.176 33.333 0.00 0.00 41.25 3.02
2382 2855 4.264460 ACTAGAAGAGCCTTGACACTTG 57.736 45.455 0.00 0.00 0.00 3.16
2406 2879 5.094429 GCGAATTGCATTTTGGAGTTTTT 57.906 34.783 9.95 0.00 45.45 1.94
2407 2880 4.905295 GCGAATTGCATTTTGGAGTTTTTG 59.095 37.500 9.95 0.00 45.45 2.44
2414 2887 2.252976 TTTGGAGTTTTTGGGCATGC 57.747 45.000 9.90 9.90 0.00 4.06
2440 2913 9.329913 CAGTAACAATGTGCACTTCTATAAAAC 57.670 33.333 19.41 5.63 0.00 2.43
2441 2914 9.062524 AGTAACAATGTGCACTTCTATAAAACA 57.937 29.630 19.41 0.00 0.00 2.83
2451 2924 0.655733 CTATAAAACACAGGCGGCCG 59.344 55.000 24.05 24.05 0.00 6.13
2458 2931 3.717294 ACAGGCGGCCGATTCCTT 61.717 61.111 33.48 13.45 0.00 3.36
2490 2963 1.497309 AAAAGCTCGGGATCCCACCA 61.497 55.000 30.42 12.48 35.37 4.17
2493 2966 2.687200 CTCGGGATCCCACCACCA 60.687 66.667 30.42 5.56 35.37 4.17
2502 2975 2.529136 CCACCACCACCTGAGGGA 60.529 66.667 2.38 0.00 36.25 4.20
2554 3029 6.385649 TTTTACTTTGCCACTCTTACCTTG 57.614 37.500 0.00 0.00 0.00 3.61
2555 3030 3.577805 ACTTTGCCACTCTTACCTTGT 57.422 42.857 0.00 0.00 0.00 3.16
2556 3031 4.699925 ACTTTGCCACTCTTACCTTGTA 57.300 40.909 0.00 0.00 0.00 2.41
2557 3032 4.386711 ACTTTGCCACTCTTACCTTGTAC 58.613 43.478 0.00 0.00 0.00 2.90
2558 3033 4.102681 ACTTTGCCACTCTTACCTTGTACT 59.897 41.667 0.00 0.00 0.00 2.73
2559 3034 3.955650 TGCCACTCTTACCTTGTACTC 57.044 47.619 0.00 0.00 0.00 2.59
2560 3035 2.565834 TGCCACTCTTACCTTGTACTCC 59.434 50.000 0.00 0.00 0.00 3.85
2561 3036 2.093606 GCCACTCTTACCTTGTACTCCC 60.094 54.545 0.00 0.00 0.00 4.30
2562 3037 3.442076 CCACTCTTACCTTGTACTCCCT 58.558 50.000 0.00 0.00 0.00 4.20
2563 3038 3.447944 CCACTCTTACCTTGTACTCCCTC 59.552 52.174 0.00 0.00 0.00 4.30
2564 3039 3.447944 CACTCTTACCTTGTACTCCCTCC 59.552 52.174 0.00 0.00 0.00 4.30
2565 3040 2.688958 CTCTTACCTTGTACTCCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
2566 3041 2.042162 TCTTACCTTGTACTCCCTCCGT 59.958 50.000 0.00 0.00 0.00 4.69
2567 3042 2.610438 TACCTTGTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
2568 3043 1.264295 ACCTTGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
2569 3044 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
2570 3045 0.172803 CTTGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
2571 3046 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2572 3047 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2573 3048 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2574 3049 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2575 3050 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2576 3051 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2577 3052 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2578 3053 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2580 3055 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
2581 3056 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
2582 3057 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
2583 3058 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
2584 3059 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
2585 3060 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
2586 3061 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
2587 3062 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
2588 3063 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
2589 3064 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
2590 3065 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
2591 3066 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
2592 3067 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2593 3068 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2594 3069 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2595 3070 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2596 3071 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2597 3072 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2598 3073 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2599 3074 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2600 3075 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2601 3076 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2602 3077 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2603 3078 6.393990 GTCGCAGAAATGGATGTATCTAGAT 58.606 40.000 10.73 10.73 39.69 1.98
2604 3079 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
2605 3080 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
2606 3081 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
2607 3082 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
2608 3083 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
2634 3109 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2635 3110 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2636 3111 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2637 3112 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2638 3113 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2639 3114 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2640 3115 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2641 3116 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2642 3117 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2643 3118 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2644 3119 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2645 3120 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2646 3121 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2647 3122 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2648 3123 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2649 3124 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2650 3125 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2651 3126 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2652 3127 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2653 3128 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2654 3129 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2655 3130 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2656 3131 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2657 3132 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2658 3133 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2664 3139 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
2666 3141 1.076677 TGGAACGGAGGGAGTACTTCT 59.923 52.381 0.01 0.06 0.00 2.85
2667 3142 1.477295 GGAACGGAGGGAGTACTTCTG 59.523 57.143 0.01 0.62 0.00 3.02
2686 3161 5.269554 TCTGAAGGGGGATGTTGTTTAAT 57.730 39.130 0.00 0.00 0.00 1.40
2688 3163 6.081356 TCTGAAGGGGGATGTTGTTTAATTT 58.919 36.000 0.00 0.00 0.00 1.82
2690 3165 7.730784 TCTGAAGGGGGATGTTGTTTAATTTTA 59.269 33.333 0.00 0.00 0.00 1.52
2726 3201 9.239551 ACCACTAAAATGTTCTAAGATTAACCC 57.760 33.333 0.00 0.00 0.00 4.11
2740 3215 9.667107 CTAAGATTAACCCTGTTAGAAATGTGA 57.333 33.333 0.00 0.00 0.00 3.58
2915 3394 5.883673 TGTACTTTTAGCCCACATATTCACC 59.116 40.000 0.00 0.00 0.00 4.02
2937 3416 5.779771 ACCCATTGTTGTCATTATTGAACCT 59.220 36.000 0.00 0.00 32.48 3.50
2983 3463 6.352516 TGGAAAGTTAACCATTGCATTTGTT 58.647 32.000 10.57 3.86 0.00 2.83
2987 3467 7.622893 AAGTTAACCATTGCATTTGTTTGTT 57.377 28.000 0.88 1.10 0.00 2.83
3016 3496 7.115378 CACAAAGCAGACTGGATTTTTATTCAC 59.885 37.037 4.26 0.00 0.00 3.18
3019 3499 6.479884 AGCAGACTGGATTTTTATTCACTCT 58.520 36.000 4.26 0.00 0.00 3.24
3025 3505 6.072286 ACTGGATTTTTATTCACTCTGCTGTG 60.072 38.462 0.00 0.00 39.15 3.66
3064 3544 7.213216 ACATTTACATTCATGTGTGCTGTAA 57.787 32.000 2.50 2.84 41.89 2.41
3085 3565 9.416284 CTGTAATTGGGGTATGGTTTAGTTATT 57.584 33.333 0.00 0.00 0.00 1.40
3132 3612 2.415512 GGAGTGGAATAACGCTGTCAAC 59.584 50.000 0.00 0.00 0.00 3.18
3133 3613 3.326747 GAGTGGAATAACGCTGTCAACT 58.673 45.455 0.00 0.00 0.00 3.16
3234 3714 2.196742 ATCCAAGGACAGGGCTGATA 57.803 50.000 0.00 0.00 0.00 2.15
3273 3753 4.099573 AGAGAAGTCCAACTGAAGACGAAA 59.900 41.667 0.00 0.00 38.08 3.46
3281 3761 0.603707 CTGAAGACGAAAGCAGCCCA 60.604 55.000 0.00 0.00 0.00 5.36
3332 3812 2.615912 GGAAGAATCGCAAAGGAGGATG 59.384 50.000 0.00 0.00 0.00 3.51
3392 3872 4.003788 CCAACTGGAGACGGCGGT 62.004 66.667 13.24 0.00 41.93 5.68
3515 3995 1.608717 GAAGAAGCCGAGAGCCTGGA 61.609 60.000 0.00 0.00 45.47 3.86
3563 4043 1.625818 AGAAGCCCAACTGAAGACGAT 59.374 47.619 0.00 0.00 0.00 3.73
3721 4201 2.821366 CACGGAGGATGGCAGTGC 60.821 66.667 6.55 6.55 0.00 4.40
3766 4246 2.203640 AGACCACAGCCCTCGTCA 60.204 61.111 0.00 0.00 0.00 4.35
3794 4277 1.126329 ATCGGGAGCAGAGGCATCAT 61.126 55.000 0.00 0.00 44.61 2.45
3863 4346 3.420300 TCCGAGAGCCGAGATTATAGT 57.580 47.619 0.00 0.00 41.76 2.12
3877 4361 7.389330 CCGAGATTATAGTCAGTAGATGTCTGT 59.611 40.741 0.00 0.00 34.86 3.41
3886 4370 3.553511 CAGTAGATGTCTGTCATTTCCGC 59.446 47.826 0.00 0.00 36.83 5.54
3887 4371 1.645034 AGATGTCTGTCATTTCCGCG 58.355 50.000 0.00 0.00 36.83 6.46
3888 4372 0.652592 GATGTCTGTCATTTCCGCGG 59.347 55.000 22.12 22.12 36.83 6.46
3894 4378 0.948623 TGTCATTTCCGCGGTGTGAG 60.949 55.000 27.15 12.72 0.00 3.51
3899 4383 0.462225 TTTCCGCGGTGTGAGAAACA 60.462 50.000 27.15 0.00 36.04 2.83
3900 4384 0.462225 TTCCGCGGTGTGAGAAACAA 60.462 50.000 27.15 4.55 41.57 2.83
3901 4385 0.462225 TCCGCGGTGTGAGAAACAAA 60.462 50.000 27.15 0.00 41.57 2.83
3911 4395 4.156739 GTGTGAGAAACAAATGGATCCCTC 59.843 45.833 9.90 6.37 41.57 4.30
3917 4401 2.057922 ACAAATGGATCCCTCGCCTAT 58.942 47.619 9.90 0.00 0.00 2.57
3953 4437 3.255379 GATGAGGTTCGTCGCCGC 61.255 66.667 0.00 0.00 0.00 6.53
3977 4461 0.320421 TGTAGGCTCTGTTCCGTTGC 60.320 55.000 0.00 0.00 0.00 4.17
4042 4530 2.527951 ATCCACGGTTCCTGAGCAGC 62.528 60.000 0.00 0.00 0.00 5.25
4053 4541 1.202627 CCTGAGCAGCTGGGATAGTTC 60.203 57.143 17.12 0.00 32.31 3.01
4077 4565 8.768501 TCTAATTCTAGCTCTGGTAATTCAGA 57.231 34.615 0.00 0.00 41.03 3.27
4103 4597 3.330126 TCCCTGGCTGTAAGTATAGCT 57.670 47.619 6.97 0.00 39.91 3.32
4193 4692 4.755123 ACAGTGTGGTACTAGCATTTGTTC 59.245 41.667 0.00 0.00 37.60 3.18
4201 4700 6.537301 TGGTACTAGCATTTGTTCCGATTAAG 59.463 38.462 0.00 0.00 0.00 1.85
4202 4701 6.018180 GGTACTAGCATTTGTTCCGATTAAGG 60.018 42.308 0.00 0.00 0.00 2.69
4203 4702 3.782889 AGCATTTGTTCCGATTAAGGC 57.217 42.857 0.00 0.00 0.00 4.35
4204 4703 3.356290 AGCATTTGTTCCGATTAAGGCT 58.644 40.909 0.00 0.00 33.35 4.58
4205 4704 3.378427 AGCATTTGTTCCGATTAAGGCTC 59.622 43.478 0.00 0.00 32.87 4.70
4206 4705 3.489229 GCATTTGTTCCGATTAAGGCTCC 60.489 47.826 0.00 0.00 0.00 4.70
4207 4706 2.018542 TTGTTCCGATTAAGGCTCCG 57.981 50.000 0.00 0.00 0.00 4.63
4208 4707 0.461339 TGTTCCGATTAAGGCTCCGC 60.461 55.000 0.00 0.00 0.00 5.54
4209 4708 0.179081 GTTCCGATTAAGGCTCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
4210 4709 0.539986 TTCCGATTAAGGCTCCGCTT 59.460 50.000 0.00 0.00 0.00 4.68
4211 4710 0.179084 TCCGATTAAGGCTCCGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
4212 4711 1.160329 CCGATTAAGGCTCCGCTTGG 61.160 60.000 0.00 0.00 0.00 3.61
4213 4712 0.179084 CGATTAAGGCTCCGCTTGGA 60.179 55.000 0.00 0.00 40.32 3.53
4214 4713 1.742411 CGATTAAGGCTCCGCTTGGAA 60.742 52.381 0.00 0.00 42.58 3.53
4215 4714 2.576615 GATTAAGGCTCCGCTTGGAAT 58.423 47.619 0.00 0.00 42.58 3.01
4216 4715 1.750193 TTAAGGCTCCGCTTGGAATG 58.250 50.000 0.00 0.00 42.58 2.67
4217 4716 0.107214 TAAGGCTCCGCTTGGAATGG 60.107 55.000 0.00 0.00 42.58 3.16
4218 4717 2.830370 GGCTCCGCTTGGAATGGG 60.830 66.667 0.00 0.00 42.58 4.00
4219 4718 2.044946 GCTCCGCTTGGAATGGGT 60.045 61.111 0.00 0.00 42.58 4.51
4220 4719 2.409870 GCTCCGCTTGGAATGGGTG 61.410 63.158 0.00 0.00 42.58 4.61
4221 4720 1.002134 CTCCGCTTGGAATGGGTGT 60.002 57.895 0.00 0.00 42.58 4.16
4222 4721 0.251916 CTCCGCTTGGAATGGGTGTA 59.748 55.000 0.00 0.00 42.58 2.90
4223 4722 0.693622 TCCGCTTGGAATGGGTGTAA 59.306 50.000 0.00 0.00 39.40 2.41
4224 4723 1.074084 TCCGCTTGGAATGGGTGTAAA 59.926 47.619 0.00 0.00 39.40 2.01
4225 4724 1.201414 CCGCTTGGAATGGGTGTAAAC 59.799 52.381 0.00 0.00 33.02 2.01
4226 4725 2.159382 CGCTTGGAATGGGTGTAAACT 58.841 47.619 0.00 0.00 0.00 2.66
4227 4726 2.556622 CGCTTGGAATGGGTGTAAACTT 59.443 45.455 0.00 0.00 0.00 2.66
4228 4727 3.005367 CGCTTGGAATGGGTGTAAACTTT 59.995 43.478 0.00 0.00 0.00 2.66
4229 4728 4.500716 CGCTTGGAATGGGTGTAAACTTTT 60.501 41.667 0.00 0.00 0.00 2.27
4230 4729 5.278561 CGCTTGGAATGGGTGTAAACTTTTA 60.279 40.000 0.00 0.00 0.00 1.52
4231 4730 5.924254 GCTTGGAATGGGTGTAAACTTTTAC 59.076 40.000 5.11 5.11 42.51 2.01
4268 4767 6.724694 TTACACATGTAAAATACCGGTCAC 57.275 37.500 12.40 3.12 37.54 3.67
4269 4768 4.643463 ACACATGTAAAATACCGGTCACA 58.357 39.130 12.40 9.40 0.00 3.58
4270 4769 4.693566 ACACATGTAAAATACCGGTCACAG 59.306 41.667 12.40 0.68 0.00 3.66
4271 4770 3.687698 ACATGTAAAATACCGGTCACAGC 59.312 43.478 12.40 0.00 0.00 4.40
4272 4771 3.688694 TGTAAAATACCGGTCACAGCT 57.311 42.857 12.40 0.00 0.00 4.24
4273 4772 4.804868 TGTAAAATACCGGTCACAGCTA 57.195 40.909 12.40 0.00 0.00 3.32
4274 4773 5.149973 TGTAAAATACCGGTCACAGCTAA 57.850 39.130 12.40 0.00 0.00 3.09
4275 4774 5.736813 TGTAAAATACCGGTCACAGCTAAT 58.263 37.500 12.40 0.00 0.00 1.73
4276 4775 6.174760 TGTAAAATACCGGTCACAGCTAATT 58.825 36.000 12.40 0.00 0.00 1.40
4277 4776 6.655848 TGTAAAATACCGGTCACAGCTAATTT 59.344 34.615 12.40 6.07 0.00 1.82
4278 4777 6.584185 AAAATACCGGTCACAGCTAATTTT 57.416 33.333 12.40 12.46 0.00 1.82
4279 4778 5.813080 AATACCGGTCACAGCTAATTTTC 57.187 39.130 12.40 0.00 0.00 2.29
4280 4779 3.418684 ACCGGTCACAGCTAATTTTCT 57.581 42.857 0.00 0.00 0.00 2.52
4281 4780 3.074412 ACCGGTCACAGCTAATTTTCTG 58.926 45.455 0.00 5.42 36.45 3.02
4282 4781 2.159517 CCGGTCACAGCTAATTTTCTGC 60.160 50.000 0.00 0.00 33.80 4.26
4283 4782 2.744202 CGGTCACAGCTAATTTTCTGCT 59.256 45.455 6.56 0.00 37.56 4.24
4284 4783 3.189287 CGGTCACAGCTAATTTTCTGCTT 59.811 43.478 6.56 0.00 34.51 3.91
4285 4784 4.479619 GGTCACAGCTAATTTTCTGCTTG 58.520 43.478 6.56 0.84 34.51 4.01
4286 4785 4.479619 GTCACAGCTAATTTTCTGCTTGG 58.520 43.478 6.56 0.00 34.51 3.61
4287 4786 4.216257 GTCACAGCTAATTTTCTGCTTGGA 59.784 41.667 6.56 0.00 34.51 3.53
4288 4787 4.826733 TCACAGCTAATTTTCTGCTTGGAA 59.173 37.500 6.56 0.00 34.51 3.53
4289 4788 5.301551 TCACAGCTAATTTTCTGCTTGGAAA 59.698 36.000 6.56 0.00 34.51 3.13
4290 4789 5.403466 CACAGCTAATTTTCTGCTTGGAAAC 59.597 40.000 6.56 0.00 35.31 2.78
4291 4790 5.068987 ACAGCTAATTTTCTGCTTGGAAACA 59.931 36.000 6.56 0.00 35.31 2.83
4292 4791 6.406849 ACAGCTAATTTTCTGCTTGGAAACAA 60.407 34.615 6.56 0.00 39.92 2.83
4293 4792 7.847557 ACAGCTAATTTTCTGCTTGGAAACAAA 60.848 33.333 6.56 0.00 40.61 2.83
4304 4803 2.018515 TGGAAACAAAACGACCAGTCC 58.981 47.619 0.00 0.00 37.44 3.85
4305 4804 2.018515 GGAAACAAAACGACCAGTCCA 58.981 47.619 0.00 0.00 0.00 4.02
4306 4805 2.032924 GGAAACAAAACGACCAGTCCAG 59.967 50.000 0.00 0.00 0.00 3.86
4307 4806 1.675552 AACAAAACGACCAGTCCAGG 58.324 50.000 0.00 0.00 0.00 4.45
4308 4807 0.544697 ACAAAACGACCAGTCCAGGT 59.455 50.000 0.00 0.00 46.82 4.00
4317 4816 3.191888 ACCAGTCCAGGTCTGTATTCT 57.808 47.619 12.19 0.00 37.28 2.40
4318 4817 4.332683 ACCAGTCCAGGTCTGTATTCTA 57.667 45.455 12.19 0.00 37.28 2.10
4319 4818 4.684724 ACCAGTCCAGGTCTGTATTCTAA 58.315 43.478 12.19 0.00 37.28 2.10
4320 4819 5.091552 ACCAGTCCAGGTCTGTATTCTAAA 58.908 41.667 12.19 0.00 37.28 1.85
4321 4820 5.046520 ACCAGTCCAGGTCTGTATTCTAAAC 60.047 44.000 12.19 0.00 37.28 2.01
4322 4821 5.420409 CAGTCCAGGTCTGTATTCTAAACC 58.580 45.833 5.57 0.00 0.00 3.27
4323 4822 5.046591 CAGTCCAGGTCTGTATTCTAAACCA 60.047 44.000 5.57 0.00 32.25 3.67
4324 4823 5.187967 AGTCCAGGTCTGTATTCTAAACCAG 59.812 44.000 0.00 0.00 32.25 4.00
4325 4824 4.081087 TCCAGGTCTGTATTCTAAACCAGC 60.081 45.833 0.00 0.00 32.25 4.85
4326 4825 4.192317 CAGGTCTGTATTCTAAACCAGCC 58.808 47.826 0.00 0.00 32.25 4.85
4327 4826 3.118738 AGGTCTGTATTCTAAACCAGCCG 60.119 47.826 0.00 0.00 32.25 5.52
4328 4827 3.195661 GTCTGTATTCTAAACCAGCCGG 58.804 50.000 0.00 0.00 38.77 6.13
4329 4828 3.101437 TCTGTATTCTAAACCAGCCGGA 58.899 45.455 5.05 0.00 35.59 5.14
4330 4829 3.709653 TCTGTATTCTAAACCAGCCGGAT 59.290 43.478 5.05 0.00 35.59 4.18
4331 4830 4.897076 TCTGTATTCTAAACCAGCCGGATA 59.103 41.667 5.05 0.00 35.59 2.59
4332 4831 4.952460 TGTATTCTAAACCAGCCGGATAC 58.048 43.478 5.05 0.10 35.59 2.24
4333 4832 4.406326 TGTATTCTAAACCAGCCGGATACA 59.594 41.667 5.05 3.17 35.59 2.29
4334 4833 3.985019 TTCTAAACCAGCCGGATACAA 57.015 42.857 5.05 0.00 35.59 2.41
4335 4834 3.536956 TCTAAACCAGCCGGATACAAG 57.463 47.619 5.05 0.00 35.59 3.16
4336 4835 1.940613 CTAAACCAGCCGGATACAAGC 59.059 52.381 5.05 0.00 35.59 4.01
4337 4836 1.024579 AAACCAGCCGGATACAAGCG 61.025 55.000 5.05 0.00 40.32 4.68
4338 4837 1.895020 AACCAGCCGGATACAAGCGA 61.895 55.000 5.05 0.00 40.32 4.93
4339 4838 1.153449 CCAGCCGGATACAAGCGAA 60.153 57.895 5.05 0.00 40.32 4.70
4340 4839 0.742990 CCAGCCGGATACAAGCGAAA 60.743 55.000 5.05 0.00 40.32 3.46
4341 4840 1.083489 CAGCCGGATACAAGCGAAAA 58.917 50.000 5.05 0.00 40.32 2.29
4342 4841 1.084289 AGCCGGATACAAGCGAAAAC 58.916 50.000 5.05 0.00 40.32 2.43
4343 4842 0.247537 GCCGGATACAAGCGAAAACG 60.248 55.000 5.05 0.00 0.00 3.60
4344 4843 0.247537 CCGGATACAAGCGAAAACGC 60.248 55.000 0.00 6.50 0.00 4.84
4346 4845 1.921887 CGGATACAAGCGAAAACGCTA 59.078 47.619 16.90 2.99 45.26 4.26
4347 4846 2.346244 CGGATACAAGCGAAAACGCTAA 59.654 45.455 16.90 7.04 45.26 3.09
4348 4847 3.000925 CGGATACAAGCGAAAACGCTAAT 59.999 43.478 16.90 11.05 45.26 1.73
4349 4848 4.515432 GGATACAAGCGAAAACGCTAATC 58.485 43.478 16.90 17.35 45.26 1.75
4350 4849 2.894307 ACAAGCGAAAACGCTAATCC 57.106 45.000 16.90 0.00 45.26 3.01
4351 4850 2.147958 ACAAGCGAAAACGCTAATCCA 58.852 42.857 16.90 0.00 45.26 3.41
4352 4851 2.550606 ACAAGCGAAAACGCTAATCCAA 59.449 40.909 16.90 0.00 45.26 3.53
4353 4852 3.163594 CAAGCGAAAACGCTAATCCAAG 58.836 45.455 16.90 0.00 45.26 3.61
4354 4853 1.130561 AGCGAAAACGCTAATCCAAGC 59.869 47.619 15.19 0.00 44.06 4.01
4360 4859 2.907407 GCTAATCCAAGCGGGCCC 60.907 66.667 13.57 13.57 36.21 5.80
4361 4860 2.919043 CTAATCCAAGCGGGCCCT 59.081 61.111 22.43 0.00 36.21 5.19
4362 4861 2.052047 GCTAATCCAAGCGGGCCCTA 62.052 60.000 22.43 0.97 36.21 3.53
4363 4862 0.472471 CTAATCCAAGCGGGCCCTAA 59.528 55.000 22.43 0.00 36.21 2.69
4394 4893 4.095932 TGGTATCGATACATAGGCATCGTC 59.904 45.833 31.03 13.52 43.46 4.20
4472 5028 1.000771 AGTCCGGTCTCTAGCAGCA 60.001 57.895 0.00 0.00 0.00 4.41
4495 5051 3.654414 ACTTTCAGGTTGCTTACTCTCG 58.346 45.455 0.00 0.00 0.00 4.04
4507 5063 3.665190 CTTACTCTCGGAAGGCAAAACT 58.335 45.455 0.00 0.00 0.00 2.66
4514 5070 1.676006 CGGAAGGCAAAACTGAAGTGT 59.324 47.619 0.00 0.00 0.00 3.55
4546 5110 5.048504 CCGATCAAGGGATATGTGAAATTGG 60.049 44.000 0.00 0.00 32.67 3.16
4563 5127 1.327303 TGGATGTTGAAGCCGCTTTT 58.673 45.000 7.16 0.00 0.00 2.27
4716 5740 7.067981 GGATTTGGTTTGAATCTAGCTCAATCT 59.932 37.037 7.63 0.00 34.65 2.40
4720 5744 5.877012 GGTTTGAATCTAGCTCAATCTGTCA 59.123 40.000 7.63 0.00 32.98 3.58
4722 5746 4.691175 TGAATCTAGCTCAATCTGTCAGC 58.309 43.478 0.00 0.00 0.00 4.26
4755 5779 6.696825 ATGATAATCAACTCTGATAACGCG 57.303 37.500 3.53 3.53 41.66 6.01
4800 5824 1.594331 GAGGTTCGTTTGCTGGTCTT 58.406 50.000 0.00 0.00 0.00 3.01
4802 5826 0.317854 GGTTCGTTTGCTGGTCTTGC 60.318 55.000 0.00 0.00 0.00 4.01
4803 5827 0.657368 GTTCGTTTGCTGGTCTTGCG 60.657 55.000 0.00 0.00 0.00 4.85
4804 5828 1.781025 TTCGTTTGCTGGTCTTGCGG 61.781 55.000 0.00 0.00 0.00 5.69
4805 5829 2.644992 GTTTGCTGGTCTTGCGGG 59.355 61.111 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.539157 GTTTCTGCTGAAGAAGGGGG 58.461 55.000 6.13 0.00 45.64 5.40
111 112 1.719780 GAAGTCGTTGTGTTAGGAGCG 59.280 52.381 0.00 0.00 0.00 5.03
133 134 2.743718 CTGGACAGGTCAGGCGTT 59.256 61.111 1.41 0.00 0.00 4.84
135 136 3.699894 AGCTGGACAGGTCAGGCG 61.700 66.667 0.00 0.00 33.18 5.52
240 255 0.182775 ACAGCCCCGTTCTTGAACTT 59.817 50.000 11.11 0.00 0.00 2.66
294 309 3.058224 GCTTATTATGGTGATCGCCAACC 60.058 47.826 30.71 12.43 42.48 3.77
308 323 4.406003 ACGACCCAGAACAGAGCTTATTAT 59.594 41.667 0.00 0.00 0.00 1.28
318 333 6.975197 CAGCATATATATACGACCCAGAACAG 59.025 42.308 0.00 0.00 0.00 3.16
335 352 5.185454 CAAGTTCCCAAGTCACAGCATATA 58.815 41.667 0.00 0.00 0.00 0.86
336 353 4.012374 CAAGTTCCCAAGTCACAGCATAT 58.988 43.478 0.00 0.00 0.00 1.78
345 362 1.145119 ACCTTCCCAAGTTCCCAAGTC 59.855 52.381 0.00 0.00 0.00 3.01
348 365 1.289530 ACAACCTTCCCAAGTTCCCAA 59.710 47.619 0.00 0.00 0.00 4.12
379 398 1.247567 AACCCAGAAACATCAAGCCG 58.752 50.000 0.00 0.00 0.00 5.52
467 486 7.888021 TGGACAATAATGTTACCATTTCTCACT 59.112 33.333 0.00 0.00 41.50 3.41
584 610 5.405269 ACAAAAGCATAAAATTCTCCGCAAC 59.595 36.000 0.00 0.00 0.00 4.17
656 682 1.086696 CCAGACACCGGCATTACAAG 58.913 55.000 0.00 0.00 0.00 3.16
706 735 3.923017 ACAGTACAAGCTGCCAAATTC 57.077 42.857 0.00 0.00 39.96 2.17
728 757 4.435651 CGAACTTCTTATTTTGGCGAGTCC 60.436 45.833 0.00 0.00 0.00 3.85
729 758 4.151867 ACGAACTTCTTATTTTGGCGAGTC 59.848 41.667 0.00 0.00 0.00 3.36
766 1174 5.270853 CAGTTCGAACTCCAAACGATTTTT 58.729 37.500 27.54 0.00 37.08 1.94
767 1175 4.788521 GCAGTTCGAACTCCAAACGATTTT 60.789 41.667 27.54 0.00 37.08 1.82
768 1176 3.303791 GCAGTTCGAACTCCAAACGATTT 60.304 43.478 27.54 0.00 37.08 2.17
769 1177 2.223377 GCAGTTCGAACTCCAAACGATT 59.777 45.455 27.54 0.37 37.08 3.34
770 1178 1.798813 GCAGTTCGAACTCCAAACGAT 59.201 47.619 27.54 1.17 37.08 3.73
771 1179 1.202486 AGCAGTTCGAACTCCAAACGA 60.202 47.619 27.54 0.00 37.08 3.85
772 1180 1.070577 CAGCAGTTCGAACTCCAAACG 60.071 52.381 27.54 16.14 37.08 3.60
773 1181 1.264288 CCAGCAGTTCGAACTCCAAAC 59.736 52.381 27.54 14.27 37.08 2.93
774 1182 1.593196 CCAGCAGTTCGAACTCCAAA 58.407 50.000 27.54 0.00 37.08 3.28
775 1183 0.884704 GCCAGCAGTTCGAACTCCAA 60.885 55.000 27.54 0.00 37.08 3.53
872 1295 2.764128 GAGATGGGCCGGACTGGA 60.764 66.667 7.57 0.00 42.00 3.86
873 1296 2.317149 GAAGAGATGGGCCGGACTGG 62.317 65.000 7.57 0.00 42.50 4.00
874 1297 1.144936 GAAGAGATGGGCCGGACTG 59.855 63.158 7.57 0.00 0.00 3.51
875 1298 2.066999 GGAAGAGATGGGCCGGACT 61.067 63.158 7.57 0.00 0.00 3.85
922 1347 1.447317 GAGAGAGAGAGGGCGAGCTG 61.447 65.000 0.00 0.00 0.00 4.24
923 1348 1.152963 GAGAGAGAGAGGGCGAGCT 60.153 63.158 0.00 0.00 0.00 4.09
924 1349 1.152963 AGAGAGAGAGAGGGCGAGC 60.153 63.158 0.00 0.00 0.00 5.03
925 1350 0.469917 AGAGAGAGAGAGAGGGCGAG 59.530 60.000 0.00 0.00 0.00 5.03
926 1351 0.468226 GAGAGAGAGAGAGAGGGCGA 59.532 60.000 0.00 0.00 0.00 5.54
927 1352 0.535102 GGAGAGAGAGAGAGAGGGCG 60.535 65.000 0.00 0.00 0.00 6.13
928 1353 0.178990 GGGAGAGAGAGAGAGAGGGC 60.179 65.000 0.00 0.00 0.00 5.19
929 1354 1.133792 GTGGGAGAGAGAGAGAGAGGG 60.134 61.905 0.00 0.00 0.00 4.30
930 1355 1.846439 AGTGGGAGAGAGAGAGAGAGG 59.154 57.143 0.00 0.00 0.00 3.69
934 1359 0.033601 GCCAGTGGGAGAGAGAGAGA 60.034 60.000 12.15 0.00 35.59 3.10
989 1425 1.719725 GACTCTCATCTCGCCGCTGA 61.720 60.000 0.00 0.00 0.00 4.26
990 1426 1.299014 GACTCTCATCTCGCCGCTG 60.299 63.158 0.00 0.00 0.00 5.18
991 1427 1.723608 CTGACTCTCATCTCGCCGCT 61.724 60.000 0.00 0.00 0.00 5.52
992 1428 1.299014 CTGACTCTCATCTCGCCGC 60.299 63.158 0.00 0.00 0.00 6.53
993 1429 1.299014 GCTGACTCTCATCTCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
994 1430 1.299014 CGCTGACTCTCATCTCGCC 60.299 63.158 0.00 0.00 0.00 5.54
1166 1617 4.890306 GGGGAGAGGAGGGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
1198 1649 2.749865 CGTTGATGCGCGAATGGGT 61.750 57.895 12.10 0.00 0.00 4.51
1333 1784 3.775654 GTGAGGCGGGAGAGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
1393 1844 0.175302 CCAACACACCAGCAGCAAAA 59.825 50.000 0.00 0.00 0.00 2.44
1440 1891 2.357517 AAACAGCAGCTCCGACCG 60.358 61.111 0.00 0.00 0.00 4.79
1452 1903 1.867233 CACAGGGAACAGACGAAACAG 59.133 52.381 0.00 0.00 0.00 3.16
1609 2064 4.393062 ACTGATGCTATTTTCACTGGAACG 59.607 41.667 0.00 0.00 31.35 3.95
1658 2116 1.002576 CATTGTTCAACGCTGTGCTCA 60.003 47.619 0.00 0.00 0.00 4.26
1667 2125 2.873170 TCTTAGCGCATTGTTCAACG 57.127 45.000 11.47 0.00 0.00 4.10
1754 2226 2.477825 CAATGCTGCGACATAGCTAGT 58.522 47.619 0.00 0.00 41.66 2.57
1771 2244 2.694628 TGGCAAGAACAACTGAAGCAAT 59.305 40.909 0.00 0.00 0.00 3.56
1775 2248 4.212214 GTCTACTGGCAAGAACAACTGAAG 59.788 45.833 0.00 0.00 0.00 3.02
1779 2252 3.838244 TGTCTACTGGCAAGAACAACT 57.162 42.857 0.00 0.00 0.00 3.16
1781 2254 6.544197 TGTTTATTGTCTACTGGCAAGAACAA 59.456 34.615 0.00 3.02 34.62 2.83
1800 2273 7.148373 GCCACAAAATGAAGCAATGATGTTTAT 60.148 33.333 0.00 0.00 29.30 1.40
1801 2274 6.147492 GCCACAAAATGAAGCAATGATGTTTA 59.853 34.615 0.00 0.00 29.30 2.01
1820 2293 6.058833 TGATCAGTACAAACTAAAGCCACAA 58.941 36.000 0.00 0.00 33.48 3.33
1838 2311 6.430308 AGAAGGCAAATACATAGCATGATCAG 59.570 38.462 0.09 0.00 0.00 2.90
1844 2317 4.843220 GCAGAAGGCAAATACATAGCAT 57.157 40.909 0.00 0.00 43.97 3.79
1919 2392 5.968254 TCATACTCTACAAACGCATAACCA 58.032 37.500 0.00 0.00 0.00 3.67
1986 2459 3.809279 GGCAAAGGAACCTGAAAACATTG 59.191 43.478 0.00 0.00 0.00 2.82
1997 2470 2.935849 CAAACAAACAGGCAAAGGAACC 59.064 45.455 0.00 0.00 0.00 3.62
2208 2681 7.532571 TGACAATTCAAAGTAGCATGAAGATG 58.467 34.615 0.00 0.00 38.80 2.90
2231 2704 6.209774 TCCAAGTCCTCCTCCTATAAAATGA 58.790 40.000 0.00 0.00 0.00 2.57
2233 2706 5.608860 CCTCCAAGTCCTCCTCCTATAAAAT 59.391 44.000 0.00 0.00 0.00 1.82
2282 2755 0.108567 GCCTCTCTCGACCTCCAAAC 60.109 60.000 0.00 0.00 0.00 2.93
2361 2834 3.007398 CCAAGTGTCAAGGCTCTTCTAGT 59.993 47.826 0.00 0.00 0.00 2.57
2373 2846 0.313672 GCAATTCGCCCAAGTGTCAA 59.686 50.000 0.00 0.00 32.37 3.18
2376 2849 0.968405 AATGCAATTCGCCCAAGTGT 59.032 45.000 0.00 0.00 41.33 3.55
2382 2855 1.066929 ACTCCAAAATGCAATTCGCCC 60.067 47.619 0.00 0.00 41.33 6.13
2394 2867 2.092753 TGCATGCCCAAAAACTCCAAAA 60.093 40.909 16.68 0.00 0.00 2.44
2406 2879 1.545136 CACATTGTTACTGCATGCCCA 59.455 47.619 16.68 1.02 0.00 5.36
2407 2880 1.736696 GCACATTGTTACTGCATGCCC 60.737 52.381 16.68 0.00 0.00 5.36
2414 2887 9.329913 GTTTTATAGAAGTGCACATTGTTACTG 57.670 33.333 21.04 0.00 0.00 2.74
2440 2913 2.587322 TAAGGAATCGGCCGCCTGTG 62.587 60.000 23.51 0.00 31.06 3.66
2441 2914 1.696097 ATAAGGAATCGGCCGCCTGT 61.696 55.000 23.51 13.91 31.06 4.00
2451 2924 8.465201 AGCTTTTTGAGTTCATCATAAGGAATC 58.535 33.333 0.00 0.00 37.89 2.52
2458 2931 4.635765 CCCGAGCTTTTTGAGTTCATCATA 59.364 41.667 0.00 0.00 37.89 2.15
2490 2963 0.632835 TATACCGTCCCTCAGGTGGT 59.367 55.000 4.98 4.98 42.90 4.16
2493 2966 2.091499 TGTCATATACCGTCCCTCAGGT 60.091 50.000 0.00 0.00 44.08 4.00
2502 2975 4.178540 CCTCAAAACGTGTCATATACCGT 58.821 43.478 0.00 0.00 36.82 4.83
2549 3024 1.264295 GAACGGAGGGAGTACAAGGT 58.736 55.000 0.00 0.00 0.00 3.50
2550 3025 0.535797 GGAACGGAGGGAGTACAAGG 59.464 60.000 0.00 0.00 0.00 3.61
2570 3045 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
2571 3046 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2572 3047 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2573 3048 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2574 3049 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2575 3050 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2576 3051 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2577 3052 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2578 3053 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2579 3054 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2580 3055 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
2581 3056 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
2582 3057 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
2608 3083 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2609 3084 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2610 3085 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2611 3086 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2612 3087 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2613 3088 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2614 3089 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2615 3090 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2616 3091 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2617 3092 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2618 3093 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2619 3094 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2620 3095 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2621 3096 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2622 3097 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2623 3098 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2624 3099 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2625 3100 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2626 3101 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2627 3102 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2628 3103 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2629 3104 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2630 3105 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2631 3106 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2632 3107 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2633 3108 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2634 3109 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2635 3110 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2636 3111 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2637 3112 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2638 3113 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2639 3114 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2640 3115 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2641 3116 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2642 3117 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2643 3118 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2644 3119 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2645 3120 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
2646 3121 1.076677 AGAAGTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 0.00 3.53
2647 3122 1.477295 CAGAAGTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
2648 3123 2.444421 TCAGAAGTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
2649 3124 2.599408 TCAGAAGTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
2650 3125 2.448453 CTTCAGAAGTACTCCCTCCGT 58.552 52.381 1.48 0.00 0.00 4.69
2651 3126 1.751924 CCTTCAGAAGTACTCCCTCCG 59.248 57.143 9.41 0.00 0.00 4.63
2652 3127 2.112190 CCCTTCAGAAGTACTCCCTCC 58.888 57.143 9.41 0.00 0.00 4.30
2653 3128 2.112190 CCCCTTCAGAAGTACTCCCTC 58.888 57.143 9.41 0.00 0.00 4.30
2654 3129 1.273896 CCCCCTTCAGAAGTACTCCCT 60.274 57.143 9.41 0.00 0.00 4.20
2655 3130 1.205055 CCCCCTTCAGAAGTACTCCC 58.795 60.000 9.41 0.00 0.00 4.30
2656 3131 2.249309 TCCCCCTTCAGAAGTACTCC 57.751 55.000 9.41 0.00 0.00 3.85
2657 3132 3.108376 ACATCCCCCTTCAGAAGTACTC 58.892 50.000 9.41 0.00 0.00 2.59
2658 3133 3.207044 ACATCCCCCTTCAGAAGTACT 57.793 47.619 9.41 0.00 0.00 2.73
2664 3139 4.733077 TTAAACAACATCCCCCTTCAGA 57.267 40.909 0.00 0.00 0.00 3.27
2666 3141 6.755542 AAAATTAAACAACATCCCCCTTCA 57.244 33.333 0.00 0.00 0.00 3.02
2667 3142 6.809689 CGTAAAATTAAACAACATCCCCCTTC 59.190 38.462 0.00 0.00 0.00 3.46
2686 3161 9.723601 ACATTTTAGTGGTAATACCTCGTAAAA 57.276 29.630 11.16 15.51 39.58 1.52
2688 3163 9.369904 GAACATTTTAGTGGTAATACCTCGTAA 57.630 33.333 11.16 4.49 39.58 3.18
2690 3165 7.618137 AGAACATTTTAGTGGTAATACCTCGT 58.382 34.615 11.16 0.00 39.58 4.18
2726 3201 9.467258 AAATTGACATGTTCACATTTCTAACAG 57.533 29.630 0.00 0.00 36.62 3.16
2915 3394 7.825681 TGTAGGTTCAATAATGACAACAATGG 58.174 34.615 0.00 0.00 34.61 3.16
2937 3416 5.363868 CCAGTTCTCCTTATGTCCTCATGTA 59.636 44.000 0.00 0.00 35.70 2.29
2950 3429 5.382664 TGGTTAACTTTCCAGTTCTCCTT 57.617 39.130 5.42 0.00 42.66 3.36
2955 3435 5.195001 TGCAATGGTTAACTTTCCAGTTC 57.805 39.130 5.42 0.00 42.66 3.01
2983 3463 2.945008 CCAGTCTGCTTTGTGAGAACAA 59.055 45.455 0.00 0.00 0.00 2.83
2987 3467 3.777106 AATCCAGTCTGCTTTGTGAGA 57.223 42.857 0.00 0.00 0.00 3.27
3016 3496 3.001414 GGCATATCATAGCACAGCAGAG 58.999 50.000 0.00 0.00 0.00 3.35
3019 3499 3.497103 AAGGCATATCATAGCACAGCA 57.503 42.857 0.00 0.00 0.00 4.41
3025 3505 9.994432 GAATGTAAATGTAAGGCATATCATAGC 57.006 33.333 0.00 0.00 36.67 2.97
3064 3544 6.987557 TGGAATAACTAAACCATACCCCAAT 58.012 36.000 0.00 0.00 0.00 3.16
3085 3565 4.643795 GCAGTAAGCAGGCATGGA 57.356 55.556 0.00 0.00 44.79 3.41
3112 3592 3.326747 AGTTGACAGCGTTATTCCACTC 58.673 45.455 0.00 0.00 0.00 3.51
3113 3593 3.326747 GAGTTGACAGCGTTATTCCACT 58.673 45.455 0.00 0.00 0.00 4.00
3114 3594 2.415512 GGAGTTGACAGCGTTATTCCAC 59.584 50.000 0.00 0.00 0.00 4.02
3115 3595 2.614481 GGGAGTTGACAGCGTTATTCCA 60.614 50.000 0.00 0.00 0.00 3.53
3116 3596 2.007608 GGGAGTTGACAGCGTTATTCC 58.992 52.381 0.00 0.00 0.00 3.01
3117 3597 2.415512 GTGGGAGTTGACAGCGTTATTC 59.584 50.000 0.00 0.00 0.00 1.75
3132 3612 0.035056 GGAACCTGTGATGGTGGGAG 60.035 60.000 0.00 0.00 40.73 4.30
3133 3613 2.074967 GGAACCTGTGATGGTGGGA 58.925 57.895 0.00 0.00 40.73 4.37
3234 3714 0.901124 CTCTGCCTTCTGTAGGTGCT 59.099 55.000 2.16 0.00 46.61 4.40
3317 3797 1.139853 GACCTCATCCTCCTTTGCGAT 59.860 52.381 0.00 0.00 0.00 4.58
3318 3798 0.537188 GACCTCATCCTCCTTTGCGA 59.463 55.000 0.00 0.00 0.00 5.10
3332 3812 1.691434 CTTGCCTCCCTAGATGACCTC 59.309 57.143 0.00 0.00 0.00 3.85
3392 3872 2.224018 GCCTTTTTGCTTGTGATGGTCA 60.224 45.455 0.00 0.00 0.00 4.02
3515 3995 2.090831 ACTGTGGCTCCTCCTGATATCT 60.091 50.000 3.98 0.00 35.26 1.98
3598 4078 0.253044 GTGGCTGCTGGTATCTCCAA 59.747 55.000 0.00 0.00 46.59 3.53
3626 4106 0.309922 CGTATTCGGCTCGGCTTCTA 59.690 55.000 0.00 0.00 0.00 2.10
3651 4131 3.853330 CCGCTTGTGATGACCGCG 61.853 66.667 0.00 0.00 39.41 6.46
3661 4141 2.665603 GGCTCTTCCTCCGCTTGT 59.334 61.111 0.00 0.00 0.00 3.16
3741 4221 3.261933 GCTGTGGTCTGCTTCAGC 58.738 61.111 0.00 0.00 44.50 4.26
3743 4223 2.116983 GAGGGCTGTGGTCTGCTTCA 62.117 60.000 0.00 0.00 38.34 3.02
3749 4229 1.608717 GATGACGAGGGCTGTGGTCT 61.609 60.000 0.00 0.00 0.00 3.85
3751 4231 2.982130 GATGACGAGGGCTGTGGT 59.018 61.111 0.00 0.00 0.00 4.16
3826 4309 1.067250 GATCTCCTGGAGCGAGCAC 59.933 63.158 19.08 2.94 0.00 4.40
3863 4346 4.678044 GCGGAAATGACAGACATCTACTGA 60.678 45.833 0.00 0.00 38.38 3.41
3877 4361 0.034198 TTCTCACACCGCGGAAATGA 59.966 50.000 35.90 27.63 0.00 2.57
3886 4370 3.119849 GGATCCATTTGTTTCTCACACCG 60.120 47.826 6.95 0.00 33.98 4.94
3887 4371 3.193479 GGGATCCATTTGTTTCTCACACC 59.807 47.826 15.23 0.00 33.98 4.16
3888 4372 4.082125 AGGGATCCATTTGTTTCTCACAC 58.918 43.478 15.23 0.00 33.98 3.82
3894 4378 1.405463 GGCGAGGGATCCATTTGTTTC 59.595 52.381 15.23 0.00 0.00 2.78
3899 4383 2.057922 ACATAGGCGAGGGATCCATTT 58.942 47.619 15.23 0.00 0.00 2.32
3900 4384 1.349026 CACATAGGCGAGGGATCCATT 59.651 52.381 15.23 0.00 0.00 3.16
3901 4385 0.979665 CACATAGGCGAGGGATCCAT 59.020 55.000 15.23 6.26 0.00 3.41
3953 4437 1.740380 CGGAACAGAGCCTACACATGG 60.740 57.143 0.00 0.00 0.00 3.66
3977 4461 1.795170 CTGGCAAGACAAACACCCGG 61.795 60.000 0.00 0.00 0.00 5.73
4020 4504 1.899437 GCTCAGGAACCGTGGATCCA 61.899 60.000 11.44 11.44 39.23 3.41
4042 4530 7.309744 CCAGAGCTAGAATTAGAACTATCCCAG 60.310 44.444 0.00 0.00 0.00 4.45
4053 4541 9.995003 AATCTGAATTACCAGAGCTAGAATTAG 57.005 33.333 0.00 0.00 45.27 1.73
4077 4565 2.208872 ACTTACAGCCAGGGATCCAAT 58.791 47.619 15.23 0.00 0.00 3.16
4103 4597 7.151308 ACCAAGATCGTTTCATAAAATTGCAA 58.849 30.769 0.00 0.00 0.00 4.08
4203 4702 0.251916 TACACCCATTCCAAGCGGAG 59.748 55.000 0.00 0.00 44.10 4.63
4204 4703 0.693622 TTACACCCATTCCAAGCGGA 59.306 50.000 0.00 0.00 40.60 5.54
4205 4704 1.201414 GTTTACACCCATTCCAAGCGG 59.799 52.381 0.00 0.00 0.00 5.52
4206 4705 2.159382 AGTTTACACCCATTCCAAGCG 58.841 47.619 0.00 0.00 0.00 4.68
4207 4706 4.600692 AAAGTTTACACCCATTCCAAGC 57.399 40.909 0.00 0.00 0.00 4.01
4208 4707 7.045126 TGTAAAAGTTTACACCCATTCCAAG 57.955 36.000 11.65 0.00 45.70 3.61
4244 4743 6.709397 TGTGACCGGTATTTTACATGTGTAAA 59.291 34.615 7.34 12.88 45.55 2.01
4245 4744 6.228995 TGTGACCGGTATTTTACATGTGTAA 58.771 36.000 7.34 2.63 38.60 2.41
4246 4745 5.791666 TGTGACCGGTATTTTACATGTGTA 58.208 37.500 7.34 0.00 0.00 2.90
4247 4746 4.643463 TGTGACCGGTATTTTACATGTGT 58.357 39.130 7.34 0.00 0.00 3.72
4248 4747 4.436852 GCTGTGACCGGTATTTTACATGTG 60.437 45.833 7.34 0.00 0.00 3.21
4249 4748 3.687698 GCTGTGACCGGTATTTTACATGT 59.312 43.478 7.34 2.69 0.00 3.21
4250 4749 3.938963 AGCTGTGACCGGTATTTTACATG 59.061 43.478 7.34 0.00 0.00 3.21
4251 4750 4.216411 AGCTGTGACCGGTATTTTACAT 57.784 40.909 7.34 0.00 0.00 2.29
4252 4751 3.688694 AGCTGTGACCGGTATTTTACA 57.311 42.857 7.34 7.49 0.00 2.41
4253 4752 6.673154 AATTAGCTGTGACCGGTATTTTAC 57.327 37.500 7.34 2.59 0.00 2.01
4254 4753 7.608761 AGAAAATTAGCTGTGACCGGTATTTTA 59.391 33.333 7.34 0.00 0.00 1.52
4255 4754 6.433093 AGAAAATTAGCTGTGACCGGTATTTT 59.567 34.615 7.34 13.54 0.00 1.82
4256 4755 5.944007 AGAAAATTAGCTGTGACCGGTATTT 59.056 36.000 7.34 4.26 0.00 1.40
4257 4756 5.354234 CAGAAAATTAGCTGTGACCGGTATT 59.646 40.000 7.34 0.00 0.00 1.89
4258 4757 4.876107 CAGAAAATTAGCTGTGACCGGTAT 59.124 41.667 7.34 0.00 0.00 2.73
4259 4758 4.250464 CAGAAAATTAGCTGTGACCGGTA 58.750 43.478 7.34 0.00 0.00 4.02
4260 4759 3.074412 CAGAAAATTAGCTGTGACCGGT 58.926 45.455 6.92 6.92 0.00 5.28
4261 4760 2.159517 GCAGAAAATTAGCTGTGACCGG 60.160 50.000 0.00 0.00 34.66 5.28
4262 4761 2.744202 AGCAGAAAATTAGCTGTGACCG 59.256 45.455 0.00 0.00 37.20 4.79
4263 4762 4.479619 CAAGCAGAAAATTAGCTGTGACC 58.520 43.478 0.00 0.00 38.86 4.02
4264 4763 4.216257 TCCAAGCAGAAAATTAGCTGTGAC 59.784 41.667 0.00 0.00 38.86 3.67
4265 4764 4.397420 TCCAAGCAGAAAATTAGCTGTGA 58.603 39.130 0.00 0.00 38.86 3.58
4266 4765 4.771590 TCCAAGCAGAAAATTAGCTGTG 57.228 40.909 0.00 1.96 38.86 3.66
4267 4766 5.068987 TGTTTCCAAGCAGAAAATTAGCTGT 59.931 36.000 0.00 0.00 37.49 4.40
4268 4767 5.531634 TGTTTCCAAGCAGAAAATTAGCTG 58.468 37.500 0.00 3.72 37.49 4.24
4269 4768 5.789643 TGTTTCCAAGCAGAAAATTAGCT 57.210 34.783 0.00 0.00 37.49 3.32
4270 4769 6.843069 TTTGTTTCCAAGCAGAAAATTAGC 57.157 33.333 0.00 0.00 37.49 3.09
4271 4770 7.221838 TCGTTTTGTTTCCAAGCAGAAAATTAG 59.778 33.333 0.00 0.00 37.49 1.73
4272 4771 7.009723 GTCGTTTTGTTTCCAAGCAGAAAATTA 59.990 33.333 0.00 0.00 37.49 1.40
4273 4772 5.872070 TCGTTTTGTTTCCAAGCAGAAAATT 59.128 32.000 0.00 0.00 37.49 1.82
4274 4773 5.290885 GTCGTTTTGTTTCCAAGCAGAAAAT 59.709 36.000 0.00 0.00 37.49 1.82
4275 4774 4.623595 GTCGTTTTGTTTCCAAGCAGAAAA 59.376 37.500 0.00 0.00 37.49 2.29
4276 4775 4.170256 GTCGTTTTGTTTCCAAGCAGAAA 58.830 39.130 0.00 0.00 33.40 2.52
4277 4776 3.428316 GGTCGTTTTGTTTCCAAGCAGAA 60.428 43.478 0.00 0.00 0.00 3.02
4278 4777 2.098443 GGTCGTTTTGTTTCCAAGCAGA 59.902 45.455 0.00 0.00 0.00 4.26
4279 4778 2.159310 TGGTCGTTTTGTTTCCAAGCAG 60.159 45.455 0.00 0.00 0.00 4.24
4280 4779 1.819288 TGGTCGTTTTGTTTCCAAGCA 59.181 42.857 0.00 0.00 0.00 3.91
4281 4780 2.159296 ACTGGTCGTTTTGTTTCCAAGC 60.159 45.455 0.00 0.00 0.00 4.01
4282 4781 3.488553 GGACTGGTCGTTTTGTTTCCAAG 60.489 47.826 0.00 0.00 0.00 3.61
4283 4782 2.424246 GGACTGGTCGTTTTGTTTCCAA 59.576 45.455 0.00 0.00 0.00 3.53
4284 4783 2.018515 GGACTGGTCGTTTTGTTTCCA 58.981 47.619 0.00 0.00 0.00 3.53
4285 4784 2.018515 TGGACTGGTCGTTTTGTTTCC 58.981 47.619 0.00 0.00 0.00 3.13
4286 4785 2.032924 CCTGGACTGGTCGTTTTGTTTC 59.967 50.000 0.00 0.00 0.00 2.78
4287 4786 2.021457 CCTGGACTGGTCGTTTTGTTT 58.979 47.619 0.00 0.00 0.00 2.83
4288 4787 1.064979 ACCTGGACTGGTCGTTTTGTT 60.065 47.619 0.00 0.00 34.86 2.83
4289 4788 0.544697 ACCTGGACTGGTCGTTTTGT 59.455 50.000 0.00 0.00 34.86 2.83
4290 4789 1.226746 GACCTGGACTGGTCGTTTTG 58.773 55.000 11.78 0.00 45.69 2.44
4291 4790 3.700198 GACCTGGACTGGTCGTTTT 57.300 52.632 11.78 0.00 45.69 2.43
4297 4796 3.191888 AGAATACAGACCTGGACTGGT 57.808 47.619 25.74 15.52 44.10 4.00
4298 4797 5.420409 GTTTAGAATACAGACCTGGACTGG 58.580 45.833 25.74 11.26 39.38 4.00
4299 4798 5.046591 TGGTTTAGAATACAGACCTGGACTG 60.047 44.000 21.79 21.79 40.68 3.51
4300 4799 5.091552 TGGTTTAGAATACAGACCTGGACT 58.908 41.667 0.00 0.00 34.19 3.85
4301 4800 5.416271 TGGTTTAGAATACAGACCTGGAC 57.584 43.478 0.00 0.00 34.19 4.02
4302 4801 4.081087 GCTGGTTTAGAATACAGACCTGGA 60.081 45.833 0.00 0.00 32.86 3.86
4303 4802 4.192317 GCTGGTTTAGAATACAGACCTGG 58.808 47.826 1.82 0.00 32.86 4.45
4304 4803 4.192317 GGCTGGTTTAGAATACAGACCTG 58.808 47.826 0.00 0.00 32.84 4.00
4305 4804 3.118738 CGGCTGGTTTAGAATACAGACCT 60.119 47.826 0.00 0.00 35.56 3.85
4306 4805 3.195661 CGGCTGGTTTAGAATACAGACC 58.804 50.000 0.00 0.00 35.56 3.85
4307 4806 3.118884 TCCGGCTGGTTTAGAATACAGAC 60.119 47.826 12.43 0.00 35.64 3.51
4308 4807 3.101437 TCCGGCTGGTTTAGAATACAGA 58.899 45.455 12.43 0.00 36.30 3.41
4309 4808 3.536956 TCCGGCTGGTTTAGAATACAG 57.463 47.619 12.43 0.00 36.30 2.74
4310 4809 4.406326 TGTATCCGGCTGGTTTAGAATACA 59.594 41.667 12.43 13.72 36.30 2.29
4311 4810 4.952460 TGTATCCGGCTGGTTTAGAATAC 58.048 43.478 12.43 11.25 36.30 1.89
4312 4811 5.607477 CTTGTATCCGGCTGGTTTAGAATA 58.393 41.667 12.43 0.00 36.30 1.75
4313 4812 4.451900 CTTGTATCCGGCTGGTTTAGAAT 58.548 43.478 12.43 0.00 36.30 2.40
4314 4813 3.869065 CTTGTATCCGGCTGGTTTAGAA 58.131 45.455 12.43 8.77 36.30 2.10
4315 4814 2.419574 GCTTGTATCCGGCTGGTTTAGA 60.420 50.000 12.43 0.71 36.30 2.10
4316 4815 1.940613 GCTTGTATCCGGCTGGTTTAG 59.059 52.381 12.43 4.69 36.30 1.85
4317 4816 1.741055 CGCTTGTATCCGGCTGGTTTA 60.741 52.381 12.43 2.02 36.30 2.01
4318 4817 1.024579 CGCTTGTATCCGGCTGGTTT 61.025 55.000 12.43 3.08 36.30 3.27
4319 4818 1.449601 CGCTTGTATCCGGCTGGTT 60.450 57.895 12.43 5.82 36.30 3.67
4320 4819 1.895020 TTCGCTTGTATCCGGCTGGT 61.895 55.000 12.43 1.36 36.30 4.00
4321 4820 0.742990 TTTCGCTTGTATCCGGCTGG 60.743 55.000 4.71 4.71 0.00 4.85
4322 4821 1.083489 TTTTCGCTTGTATCCGGCTG 58.917 50.000 0.00 0.00 0.00 4.85
4323 4822 1.084289 GTTTTCGCTTGTATCCGGCT 58.916 50.000 0.00 0.00 0.00 5.52
4324 4823 0.247537 CGTTTTCGCTTGTATCCGGC 60.248 55.000 0.00 0.00 36.22 6.13
4325 4824 3.869866 CGTTTTCGCTTGTATCCGG 57.130 52.632 0.00 0.00 36.22 5.14
4343 4842 2.052047 TAGGGCCCGCTTGGATTAGC 62.052 60.000 18.44 0.00 37.80 3.09
4344 4843 0.472471 TTAGGGCCCGCTTGGATTAG 59.528 55.000 18.44 0.00 35.39 1.73
4345 4844 0.181824 GTTAGGGCCCGCTTGGATTA 59.818 55.000 18.44 0.00 35.39 1.75
4346 4845 1.076995 GTTAGGGCCCGCTTGGATT 60.077 57.895 18.44 0.00 35.39 3.01
4347 4846 2.270874 CTGTTAGGGCCCGCTTGGAT 62.271 60.000 18.44 0.00 35.39 3.41
4348 4847 2.931105 TGTTAGGGCCCGCTTGGA 60.931 61.111 18.44 0.00 35.39 3.53
4349 4848 2.270874 ATCTGTTAGGGCCCGCTTGG 62.271 60.000 18.44 8.49 37.09 3.61
4350 4849 0.815615 GATCTGTTAGGGCCCGCTTG 60.816 60.000 18.44 7.34 0.00 4.01
4351 4850 0.983378 AGATCTGTTAGGGCCCGCTT 60.983 55.000 18.44 0.39 0.00 4.68
4352 4851 0.983378 AAGATCTGTTAGGGCCCGCT 60.983 55.000 18.44 1.33 0.00 5.52
4353 4852 0.815615 CAAGATCTGTTAGGGCCCGC 60.816 60.000 18.44 11.77 0.00 6.13
4354 4853 0.179045 CCAAGATCTGTTAGGGCCCG 60.179 60.000 18.44 0.58 0.00 6.13
4355 4854 0.919710 ACCAAGATCTGTTAGGGCCC 59.080 55.000 16.46 16.46 0.00 5.80
4356 4855 3.555168 CGATACCAAGATCTGTTAGGGCC 60.555 52.174 0.00 0.00 0.00 5.80
4357 4856 3.321111 TCGATACCAAGATCTGTTAGGGC 59.679 47.826 0.00 0.00 0.00 5.19
4358 4857 5.730296 ATCGATACCAAGATCTGTTAGGG 57.270 43.478 0.00 0.00 0.00 3.53
4359 4858 7.215719 TGTATCGATACCAAGATCTGTTAGG 57.784 40.000 28.17 0.00 32.33 2.69
4360 4859 9.995957 CTATGTATCGATACCAAGATCTGTTAG 57.004 37.037 28.17 8.81 32.33 2.34
4361 4860 8.957466 CCTATGTATCGATACCAAGATCTGTTA 58.043 37.037 28.17 9.23 32.33 2.41
4362 4861 7.577807 GCCTATGTATCGATACCAAGATCTGTT 60.578 40.741 28.17 6.09 32.33 3.16
4363 4862 6.127591 GCCTATGTATCGATACCAAGATCTGT 60.128 42.308 28.17 9.03 32.33 3.41
4394 4893 9.419297 TCGTCCGGAGATATAAATTTTATTCAG 57.581 33.333 3.06 1.06 0.00 3.02
4472 5028 4.511826 CGAGAGTAAGCAACCTGAAAGTTT 59.488 41.667 0.00 0.00 0.00 2.66
4495 5051 2.427095 ACACACTTCAGTTTTGCCTTCC 59.573 45.455 0.00 0.00 0.00 3.46
4507 5063 4.594123 TGATCGGTTTAGACACACTTCA 57.406 40.909 0.00 0.00 0.00 3.02
4514 5070 5.365605 ACATATCCCTTGATCGGTTTAGACA 59.634 40.000 0.00 0.00 32.18 3.41
4546 5110 2.030805 AGTCAAAAGCGGCTTCAACATC 60.031 45.455 16.70 5.28 0.00 3.06
4563 5127 4.590647 ACACCTTGAAGAGAATCAGAGTCA 59.409 41.667 0.00 0.00 37.82 3.41
4716 5740 0.604073 TCATTCGGTTACGGCTGACA 59.396 50.000 0.00 0.00 41.39 3.58
4720 5744 4.330944 TGATTATCATTCGGTTACGGCT 57.669 40.909 0.00 0.00 41.39 5.52
4722 5746 5.983720 AGAGTTGATTATCATTCGGTTACGG 59.016 40.000 0.00 0.00 41.39 4.02
4755 5779 6.866010 TCATGCATAGTTGTGATTACATCC 57.134 37.500 0.00 0.00 36.53 3.51
4804 5828 2.555547 AAAGACAGCTGCCGCAACC 61.556 57.895 15.27 0.00 39.10 3.77
4805 5829 1.370900 CAAAGACAGCTGCCGCAAC 60.371 57.895 15.27 0.00 39.10 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.