Multiple sequence alignment - TraesCS5A01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G297300 chr5A 100.000 6658 0 0 1 6658 505024557 505017900 0.000000e+00 12296.0
1 TraesCS5A01G297300 chr5D 93.722 2644 109 29 3 2618 399621322 399618708 0.000000e+00 3910.0
2 TraesCS5A01G297300 chr5D 91.741 1453 97 13 3678 5126 399616501 399615068 0.000000e+00 1997.0
3 TraesCS5A01G297300 chr5D 88.024 1336 84 33 5384 6653 399615029 399613704 0.000000e+00 1511.0
4 TraesCS5A01G297300 chr5D 91.141 587 40 7 3110 3684 399618408 399617822 0.000000e+00 785.0
5 TraesCS5A01G297300 chr5D 89.899 99 6 1 2623 2721 399618552 399618458 2.520000e-24 124.0
6 TraesCS5A01G297300 chr5D 97.222 36 1 0 2769 2804 399618449 399618414 2.000000e-05 62.1
7 TraesCS5A01G297300 chr5B 93.245 2650 111 31 3 2618 479733833 479731218 0.000000e+00 3840.0
8 TraesCS5A01G297300 chr5B 91.134 1455 103 14 3678 5126 479728831 479727397 0.000000e+00 1949.0
9 TraesCS5A01G297300 chr5B 86.855 1415 93 32 5306 6651 479727412 479726022 0.000000e+00 1496.0
10 TraesCS5A01G297300 chr5B 90.103 1071 80 11 2623 3684 479731064 479730011 0.000000e+00 1367.0
11 TraesCS5A01G297300 chr5B 93.182 44 3 0 2029 2072 19791260 19791217 1.550000e-06 65.8
12 TraesCS5A01G297300 chr2A 97.101 207 3 3 5115 5319 568280909 568281114 4.940000e-91 346.0
13 TraesCS5A01G297300 chr2A 96.535 202 5 2 5106 5306 526067535 526067735 3.850000e-87 333.0
14 TraesCS5A01G297300 chr3A 97.980 198 0 4 5110 5307 13041117 13040924 2.300000e-89 340.0
15 TraesCS5A01G297300 chr3A 89.441 161 12 2 5722 5878 675873017 675873176 1.460000e-46 198.0
16 TraesCS5A01G297300 chr3A 87.425 167 19 2 5721 5885 267044905 267045071 2.450000e-44 191.0
17 TraesCS5A01G297300 chr1A 98.953 191 1 1 5117 5306 121469302 121469112 2.300000e-89 340.0
18 TraesCS5A01G297300 chr7B 98.438 192 2 1 5116 5306 413255451 413255260 2.970000e-88 337.0
19 TraesCS5A01G297300 chr7B 100.000 182 0 0 5125 5306 624944733 624944914 2.970000e-88 337.0
20 TraesCS5A01G297300 chr6A 100.000 181 0 0 5126 5306 70421118 70420938 1.070000e-87 335.0
21 TraesCS5A01G297300 chr6A 90.566 159 10 2 5727 5881 47466948 47466791 8.750000e-49 206.0
22 TraesCS5A01G297300 chr4B 94.907 216 7 3 5094 5306 239502884 239503098 1.070000e-87 335.0
23 TraesCS5A01G297300 chr4B 95.238 210 7 3 5099 5306 673191249 673191041 4.980000e-86 329.0
24 TraesCS5A01G297300 chr4D 91.034 145 13 0 5743 5887 32019591 32019447 5.270000e-46 196.0
25 TraesCS5A01G297300 chr4D 91.034 145 13 0 5743 5887 32019773 32019629 5.270000e-46 196.0
26 TraesCS5A01G297300 chr3B 88.485 165 13 2 5727 5885 399973279 399973115 1.890000e-45 195.0
27 TraesCS5A01G297300 chr2D 89.032 155 16 1 5724 5877 534928594 534928748 2.450000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G297300 chr5A 505017900 505024557 6657 True 12296.000000 12296 100.000000 1 6658 1 chr5A.!!$R1 6657
1 TraesCS5A01G297300 chr5D 399613704 399621322 7618 True 1398.183333 3910 91.958167 3 6653 6 chr5D.!!$R1 6650
2 TraesCS5A01G297300 chr5B 479726022 479733833 7811 True 2163.000000 3840 90.334250 3 6651 4 chr5B.!!$R2 6648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 391 0.178992 CACTCAAGGGTGAAGGGCAA 60.179 55.000 0.00 0.00 39.34 4.52 F
1008 1018 1.484356 AATACCGAGTTATGTCGCGC 58.516 50.000 0.00 0.00 38.69 6.86 F
1923 1951 1.274184 ACCACCCTGCTTCCCACTATA 60.274 52.381 0.00 0.00 0.00 1.31 F
3199 3387 0.322456 TGACCCAACATGCTGCCTAC 60.322 55.000 0.00 0.00 0.00 3.18 F
4026 5610 0.472925 TGGCCTGTAGAGACCAACCA 60.473 55.000 3.32 0.00 0.00 3.67 F
5163 6752 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 1875 0.689623 GGGGTCAGGCTGGATATGAG 59.310 60.0 15.73 0.0 0.00 2.90 R
2899 3086 0.040958 GCGTCTGTGGTTTGCTTCTG 60.041 55.0 0.00 0.0 0.00 3.02 R
3721 5305 0.539051 AGCAGAGAAGCGTGCCTATT 59.461 50.0 0.00 0.0 40.81 1.73 R
5157 6746 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 R
5214 6803 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.00 0.0 0.00 2.74 R
6394 8051 0.249398 CACTCCGGGGTAAGTTCAGG 59.751 60.0 6.68 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.730705 AGTACATGGGTAGATGATATCAAAATG 57.269 33.333 9.99 8.33 0.00 2.32
27 28 8.950210 GTACATGGGTAGATGATATCAAAATGG 58.050 37.037 9.99 0.00 0.00 3.16
74 75 9.859427 CCATTTTGCACATTAGAAGAATTAGAA 57.141 29.630 0.00 0.00 0.00 2.10
113 114 2.567169 CCGGCTACCTCATGATATCCAA 59.433 50.000 0.00 0.00 0.00 3.53
168 169 7.660208 GGTTATACGATGTCATAGTCCCAAAAT 59.340 37.037 1.44 0.00 0.00 1.82
255 260 5.241506 CCGCATCCTGTTAATTCATTACCAT 59.758 40.000 0.00 0.00 0.00 3.55
276 281 6.438425 ACCATGATTTAAGGTCTTCAGCATTT 59.562 34.615 0.00 0.00 0.00 2.32
281 286 8.084073 TGATTTAAGGTCTTCAGCATTTTCTTG 58.916 33.333 0.00 0.00 0.00 3.02
282 287 6.959639 TTAAGGTCTTCAGCATTTTCTTGT 57.040 33.333 0.00 0.00 0.00 3.16
283 288 4.843220 AGGTCTTCAGCATTTTCTTGTG 57.157 40.909 0.00 0.00 0.00 3.33
285 292 4.889409 AGGTCTTCAGCATTTTCTTGTGAA 59.111 37.500 0.00 0.00 0.00 3.18
294 301 4.320788 GCATTTTCTTGTGAACCTCTCTGG 60.321 45.833 0.00 0.00 42.93 3.86
383 390 1.455849 CACTCAAGGGTGAAGGGCA 59.544 57.895 0.00 0.00 39.34 5.36
384 391 0.178992 CACTCAAGGGTGAAGGGCAA 60.179 55.000 0.00 0.00 39.34 4.52
485 492 5.250982 ACTCTTGCATTCTGATGTTGATCA 58.749 37.500 0.00 0.00 37.07 2.92
570 577 2.616842 CGTTGCAAACCTTTGTCCTAGT 59.383 45.455 0.00 0.00 46.28 2.57
619 626 6.151817 AGGCTAATTCTTGGAGCTTTAAACAG 59.848 38.462 0.00 0.00 36.43 3.16
682 689 7.335127 ACCATATAGGCCATTCACTAAGATT 57.665 36.000 5.01 0.00 43.14 2.40
928 938 4.038402 CCTTCCACCATATTGAGCATTTCC 59.962 45.833 0.00 0.00 0.00 3.13
932 942 3.956199 CACCATATTGAGCATTTCCCACT 59.044 43.478 0.00 0.00 0.00 4.00
966 976 5.765182 ACCAAAGTGTCAGTAAAATCCTCTG 59.235 40.000 0.00 0.00 0.00 3.35
968 978 3.944087 AGTGTCAGTAAAATCCTCTGGC 58.056 45.455 0.00 0.00 34.84 4.85
969 979 3.327757 AGTGTCAGTAAAATCCTCTGGCA 59.672 43.478 0.00 0.00 40.68 4.92
991 1001 6.151144 GGCATAGCCTTCCGTTCAATAATAAT 59.849 38.462 0.00 0.00 46.69 1.28
995 1005 5.699458 AGCCTTCCGTTCAATAATAATACCG 59.301 40.000 0.00 0.00 0.00 4.02
1008 1018 1.484356 AATACCGAGTTATGTCGCGC 58.516 50.000 0.00 0.00 38.69 6.86
1063 1073 3.181435 TGGTGATGTGTTGGATCCTTTCA 60.181 43.478 14.23 6.65 0.00 2.69
1082 1092 4.160642 TCATAAAGTCAGCTGCCATGAT 57.839 40.909 9.47 0.00 0.00 2.45
1083 1093 5.294734 TCATAAAGTCAGCTGCCATGATA 57.705 39.130 9.47 0.00 0.00 2.15
1283 1293 8.574251 AATGATATGTGTAGTTTGCAGGTTTA 57.426 30.769 0.00 0.00 0.00 2.01
1284 1294 8.752005 ATGATATGTGTAGTTTGCAGGTTTAT 57.248 30.769 0.00 0.00 0.00 1.40
1285 1295 8.574251 TGATATGTGTAGTTTGCAGGTTTATT 57.426 30.769 0.00 0.00 0.00 1.40
1286 1296 8.458052 TGATATGTGTAGTTTGCAGGTTTATTG 58.542 33.333 0.00 0.00 0.00 1.90
1287 1297 5.446143 TGTGTAGTTTGCAGGTTTATTGG 57.554 39.130 0.00 0.00 0.00 3.16
1288 1298 4.279671 TGTGTAGTTTGCAGGTTTATTGGG 59.720 41.667 0.00 0.00 0.00 4.12
1289 1299 3.257127 TGTAGTTTGCAGGTTTATTGGGC 59.743 43.478 0.00 0.00 0.00 5.36
1330 1340 5.982516 TGAAAAATGACCTTTGATCCAAACG 59.017 36.000 0.00 0.00 0.00 3.60
1335 1345 4.204012 TGACCTTTGATCCAAACGAAACT 58.796 39.130 0.00 0.00 0.00 2.66
1389 1399 8.429641 GGGTGGTGTCTAGAATAATCAGATAAA 58.570 37.037 0.00 0.00 0.00 1.40
1465 1476 5.476945 AGCAACCTACATTTAGAAACCCTTG 59.523 40.000 0.00 0.00 0.00 3.61
1482 1500 4.202609 ACCCTTGGTCTGAATGATGTTTCT 60.203 41.667 0.00 0.00 0.00 2.52
1483 1501 5.014123 ACCCTTGGTCTGAATGATGTTTCTA 59.986 40.000 0.00 0.00 0.00 2.10
1491 1510 8.787852 GGTCTGAATGATGTTTCTAAAAGAAGT 58.212 33.333 0.00 0.00 35.37 3.01
1615 1635 6.440010 TCACACAATAACCATTGGGAATGATT 59.560 34.615 7.78 0.00 46.79 2.57
1653 1673 9.650539 ATGCTACTTTAGAATATATGTCTGCAG 57.349 33.333 7.63 7.63 0.00 4.41
1699 1719 8.700973 TGTACAGTGCTATACAAGAATATTGGA 58.299 33.333 0.00 0.00 0.00 3.53
1716 1743 5.965033 ATTGGACAGGATAATCAGTCTGT 57.035 39.130 0.00 0.00 42.37 3.41
1793 1821 3.243535 TGCTGCTATGAACATCCTCTACG 60.244 47.826 0.00 0.00 0.00 3.51
1804 1832 8.058667 TGAACATCCTCTACGTAACTGAATAA 57.941 34.615 0.00 0.00 0.00 1.40
1834 1862 7.703058 ACTACCCAGAAAATTAACCAGAATG 57.297 36.000 0.00 0.00 0.00 2.67
1839 1867 5.716703 CCAGAAAATTAACCAGAATGTCCCT 59.283 40.000 0.00 0.00 0.00 4.20
1840 1868 6.350445 CCAGAAAATTAACCAGAATGTCCCTG 60.350 42.308 0.00 0.00 0.00 4.45
1850 1878 5.557576 CAGAATGTCCCTGGAATATCTCA 57.442 43.478 0.00 0.00 0.00 3.27
1856 1884 5.664665 TGTCCCTGGAATATCTCATATCCA 58.335 41.667 0.00 0.00 0.00 3.41
1863 1891 5.188555 TGGAATATCTCATATCCAGCCTGAC 59.811 44.000 0.00 0.00 0.00 3.51
1884 1912 5.148651 ACCCCGCTAGCTATATAAAAGTG 57.851 43.478 13.93 0.00 0.00 3.16
1908 1936 7.494952 GTGTATAAAAGAAGATACCTGACCACC 59.505 40.741 0.00 0.00 0.00 4.61
1923 1951 1.274184 ACCACCCTGCTTCCCACTATA 60.274 52.381 0.00 0.00 0.00 1.31
1933 1961 4.068599 GCTTCCCACTATAGCATTCTTCC 58.931 47.826 0.00 0.00 35.05 3.46
1939 1967 5.888161 CCCACTATAGCATTCTTCCTTTTGT 59.112 40.000 0.00 0.00 0.00 2.83
1948 1976 6.772716 AGCATTCTTCCTTTTGTTCTGTAGAA 59.227 34.615 0.00 0.00 0.00 2.10
1954 1982 7.556275 TCTTCCTTTTGTTCTGTAGAATTGTGT 59.444 33.333 0.00 0.00 36.33 3.72
1955 1983 7.259290 TCCTTTTGTTCTGTAGAATTGTGTC 57.741 36.000 0.00 0.00 36.33 3.67
1993 2021 3.756434 GGTATGCAACTGCCTCTTTTGTA 59.244 43.478 0.00 0.00 41.18 2.41
2113 2141 6.876155 TGCATTGGTGAGCATGTTATATTTT 58.124 32.000 0.00 0.00 35.51 1.82
2147 2175 6.174049 ACTGCATAGTTTCTTCCTTAACCTC 58.826 40.000 0.00 0.00 31.66 3.85
2155 2183 7.461749 AGTTTCTTCCTTAACCTCAATGATGA 58.538 34.615 0.00 0.00 0.00 2.92
2179 2207 8.770828 TGACAAATTTCTTAAGAAACCTACGAG 58.229 33.333 28.38 17.19 45.55 4.18
2306 2334 3.438216 TTCCATCCATCAACAGCTGAA 57.562 42.857 23.35 5.64 37.67 3.02
2351 2379 9.886132 CTATTGGGTAAGAAAGTACAGTATTGT 57.114 33.333 0.00 0.00 41.39 2.71
2379 2407 8.957466 GTAACCTAATTCTTTTCTAGCACCATT 58.043 33.333 0.00 0.00 0.00 3.16
2381 2409 9.700831 AACCTAATTCTTTTCTAGCACCATTAT 57.299 29.630 0.00 0.00 0.00 1.28
2390 2418 8.519799 TTTTCTAGCACCATTATTCCCTTAAG 57.480 34.615 0.00 0.00 0.00 1.85
2393 2421 4.210331 AGCACCATTATTCCCTTAAGCTG 58.790 43.478 0.00 0.00 0.00 4.24
2420 2448 9.077885 AGTCTCTTTGTTTAGATTGCCATTTTA 57.922 29.630 0.00 0.00 0.00 1.52
2421 2449 9.129209 GTCTCTTTGTTTAGATTGCCATTTTAC 57.871 33.333 0.00 0.00 0.00 2.01
2432 2461 6.819649 AGATTGCCATTTTACCAACATTCATG 59.180 34.615 0.00 0.00 0.00 3.07
2433 2462 4.829968 TGCCATTTTACCAACATTCATGG 58.170 39.130 0.00 0.00 43.84 3.66
2454 2483 5.556915 TGGGTTTTCCTGTAGATACTGTTG 58.443 41.667 0.00 0.00 40.46 3.33
2475 2505 6.095720 TGTTGGGTAGCCGGAAATTAAATAAG 59.904 38.462 5.05 0.00 0.00 1.73
2534 2564 6.486657 CAGTCTCCAAGAAGATGTTTTACCAA 59.513 38.462 0.00 0.00 0.00 3.67
2558 2588 3.556999 TCTCATGGACTAGGTACTCTGC 58.443 50.000 0.00 0.00 41.75 4.26
2567 2602 5.351740 GGACTAGGTACTCTGCAAATTTGAC 59.648 44.000 22.31 13.06 41.75 3.18
2607 2642 4.887071 ACACAAAGTAGTGAAAAGATGGCA 59.113 37.500 0.57 0.00 42.05 4.92
2618 2653 6.036470 GTGAAAAGATGGCACTTAATAAGGC 58.964 40.000 4.92 5.16 0.00 4.35
2619 2654 5.714333 TGAAAAGATGGCACTTAATAAGGCA 59.286 36.000 4.92 0.00 42.19 4.75
2621 2656 6.796785 AAAGATGGCACTTAATAAGGCATT 57.203 33.333 4.92 0.00 46.74 3.56
2625 2811 8.482852 AGATGGCACTTAATAAGGCATTAAAT 57.517 30.769 4.92 0.00 46.74 1.40
2663 2849 9.358406 AGAAGGCATTAAATATGACATCAATCA 57.642 29.630 0.00 0.00 27.89 2.57
2664 2850 9.970395 GAAGGCATTAAATATGACATCAATCAA 57.030 29.630 0.00 0.00 30.82 2.57
2682 2868 4.771590 TCAACATGAAAAGCATCAGGAC 57.228 40.909 0.00 0.00 34.85 3.85
2684 2870 4.583907 TCAACATGAAAAGCATCAGGACAA 59.416 37.500 0.00 0.00 34.85 3.18
2715 2901 7.386299 GGATGCAATCTCAATAGTACTGTTAGG 59.614 40.741 5.39 1.83 44.71 2.69
2721 2907 7.989947 TCTCAATAGTACTGTTAGGGGAAAT 57.010 36.000 5.39 0.00 0.00 2.17
2765 2951 6.203723 ACAGAGACTATTCAACAGAAACAAGC 59.796 38.462 0.00 0.00 0.00 4.01
2806 2992 9.490663 GCTAATGCTTAAAGTTAACATGTACAG 57.509 33.333 8.61 0.00 36.03 2.74
2829 3015 7.334421 ACAGTATTGCTCAGACGACATTTATTT 59.666 33.333 0.00 0.00 0.00 1.40
2830 3016 7.637519 CAGTATTGCTCAGACGACATTTATTTG 59.362 37.037 0.00 0.00 0.00 2.32
2858 3045 9.567848 GTTAAACTGAAAACTCATTCTGTTCAA 57.432 29.630 11.11 3.13 45.12 2.69
2889 3076 3.540314 TGAATGCCAAAAGTTTGTGCT 57.460 38.095 14.26 1.23 36.21 4.40
2899 3086 6.564328 CCAAAAGTTTGTGCTAGGAATATCC 58.436 40.000 3.26 0.00 36.45 2.59
2916 3103 1.967319 TCCAGAAGCAAACCACAGAC 58.033 50.000 0.00 0.00 0.00 3.51
2936 3124 3.977427 ACGCAGAAAAATTGAAGGAACC 58.023 40.909 0.00 0.00 0.00 3.62
2941 3129 5.278957 GCAGAAAAATTGAAGGAACCTGCTA 60.279 40.000 0.00 0.00 40.68 3.49
2998 3186 9.028185 GTTAGGTTACATATAAGTGCTGTGTAC 57.972 37.037 0.00 0.00 0.00 2.90
3001 3189 6.814644 GGTTACATATAAGTGCTGTGTACACA 59.185 38.462 26.37 26.37 40.59 3.72
3050 3238 4.423625 AGCATATTTCCCTCACCTGTAC 57.576 45.455 0.00 0.00 0.00 2.90
3054 3242 2.715763 TTTCCCTCACCTGTACCTCT 57.284 50.000 0.00 0.00 0.00 3.69
3064 3252 7.776030 CCCTCACCTGTACCTCTATATATACAG 59.224 44.444 11.77 11.77 42.70 2.74
3094 3282 4.202131 GGCCTTCTAGTAATACAAGTCGCT 60.202 45.833 0.00 0.00 0.00 4.93
3108 3296 5.341617 ACAAGTCGCTATTACTCTAACAGC 58.658 41.667 0.00 0.00 0.00 4.40
3127 3315 1.678101 GCCACATTTCCTGCTGGATAC 59.322 52.381 13.72 0.00 42.81 2.24
3135 3323 2.730382 TCCTGCTGGATACACTTACGA 58.270 47.619 8.48 0.00 46.17 3.43
3136 3324 2.426024 TCCTGCTGGATACACTTACGAC 59.574 50.000 8.48 0.00 46.17 4.34
3172 3360 4.114058 CCAAACACTGGCATTTCCATAG 57.886 45.455 0.00 0.00 45.50 2.23
3184 3372 4.455606 CATTTCCATAGGTTCCTCTGACC 58.544 47.826 5.92 0.00 37.44 4.02
3199 3387 0.322456 TGACCCAACATGCTGCCTAC 60.322 55.000 0.00 0.00 0.00 3.18
3213 3401 1.202758 TGCCTACTTGTGACACCAAGG 60.203 52.381 16.80 12.57 44.89 3.61
3221 3409 3.859411 TGTGACACCAAGGTTTTTGTC 57.141 42.857 2.45 0.00 39.09 3.18
3227 3415 2.955660 CACCAAGGTTTTTGTCTGGCTA 59.044 45.455 0.00 0.00 0.00 3.93
3236 3424 5.279456 GGTTTTTGTCTGGCTAATTGGTCAT 60.279 40.000 0.00 0.00 0.00 3.06
3238 3426 6.418057 TTTTGTCTGGCTAATTGGTCATTT 57.582 33.333 0.00 0.00 0.00 2.32
3350 3539 9.865321 AACTTAAAACTCCTTAACAAACTTTCC 57.135 29.630 0.00 0.00 0.00 3.13
3412 3601 7.661437 TGATTTAGGCATAGGTTTATGTAGCTG 59.339 37.037 0.00 0.00 39.12 4.24
3417 3608 7.922382 AGGCATAGGTTTATGTAGCTGATTAT 58.078 34.615 0.00 0.00 39.12 1.28
3455 3648 5.366186 AGTCCTGTTGCTGATCAGATCTAAT 59.634 40.000 27.04 0.82 34.02 1.73
3460 3653 5.104817 TGTTGCTGATCAGATCTAATGGTGA 60.105 40.000 27.04 0.00 0.00 4.02
3462 3655 6.923199 TGCTGATCAGATCTAATGGTGATA 57.077 37.500 27.04 0.00 29.66 2.15
3465 3658 6.696583 GCTGATCAGATCTAATGGTGATATCG 59.303 42.308 27.04 0.00 29.66 2.92
3467 3660 8.807948 TGATCAGATCTAATGGTGATATCGTA 57.192 34.615 11.83 0.00 29.66 3.43
3560 3753 6.586844 GCCTTACATAATCTCCAATAGTCGAC 59.413 42.308 7.70 7.70 0.00 4.20
3583 3778 4.820173 CCAATCATACATGACATGCAGACT 59.180 41.667 15.49 0.00 40.03 3.24
3585 3780 3.200483 TCATACATGACATGCAGACTGC 58.800 45.455 20.86 20.86 45.29 4.40
3633 3828 7.865706 ATCGGCAAACTACTCAGATTATTTT 57.134 32.000 0.00 0.00 0.00 1.82
3721 5305 3.104512 TCTGTTAGGCTTAGGCTAGCAA 58.895 45.455 26.31 17.15 46.79 3.91
3726 5310 3.778954 AGGCTTAGGCTAGCAAATAGG 57.221 47.619 18.24 7.72 43.02 2.57
3740 5324 0.539051 AATAGGCACGCTTCTCTGCT 59.461 50.000 0.00 0.00 33.63 4.24
3752 5336 4.025061 CGCTTCTCTGCTATTCAATCAAGG 60.025 45.833 0.00 0.00 0.00 3.61
3753 5337 4.261114 GCTTCTCTGCTATTCAATCAAGGC 60.261 45.833 0.00 0.00 0.00 4.35
3832 5416 5.245751 ACAGAAATTCCATAACATGCCACAA 59.754 36.000 0.00 0.00 0.00 3.33
3849 5433 4.695455 GCCACAAGCTCATGAGTTTACTAA 59.305 41.667 22.44 0.00 38.99 2.24
3878 5462 3.275617 TCGCATTTAGTGGTAGGCAAT 57.724 42.857 0.00 0.00 0.00 3.56
3886 5470 7.685155 GCATTTAGTGGTAGGCAATCAAATGAT 60.685 37.037 7.65 0.00 35.26 2.45
3890 5474 6.662755 AGTGGTAGGCAATCAAATGATCTAA 58.337 36.000 0.00 0.00 32.75 2.10
3917 5501 7.441836 TCCTTTTTCTATATGCTCGCTAATGA 58.558 34.615 0.00 0.00 0.00 2.57
3920 5504 9.374960 CTTTTTCTATATGCTCGCTAATGAAAC 57.625 33.333 0.00 0.00 0.00 2.78
3933 5517 0.536460 ATGAAACCGTTCCGCCTGTT 60.536 50.000 0.00 0.00 32.28 3.16
3997 5581 2.440517 TGCAATGGTGGATATGCAGT 57.559 45.000 0.00 0.00 43.32 4.40
4010 5594 5.882000 TGGATATGCAGTACATGATATTGGC 59.118 40.000 0.00 0.00 40.06 4.52
4026 5610 0.472925 TGGCCTGTAGAGACCAACCA 60.473 55.000 3.32 0.00 0.00 3.67
4045 5629 7.147373 ACCAACCACACATATAGCTTAAGGTAT 60.147 37.037 25.82 25.82 41.16 2.73
4046 5630 8.372459 CCAACCACACATATAGCTTAAGGTATA 58.628 37.037 27.85 27.85 42.79 1.47
4087 5671 3.193267 TCAACAAATAAGGCATCACAGGC 59.807 43.478 0.00 0.00 0.00 4.85
4088 5672 1.745087 ACAAATAAGGCATCACAGGCG 59.255 47.619 0.00 0.00 39.37 5.52
4089 5673 1.066002 CAAATAAGGCATCACAGGCGG 59.934 52.381 0.00 0.00 39.37 6.13
4094 5678 2.103538 GCATCACAGGCGGCATTG 59.896 61.111 13.08 7.70 0.00 2.82
4095 5679 2.103538 CATCACAGGCGGCATTGC 59.896 61.111 13.08 0.00 0.00 3.56
4131 5715 8.190326 TGAATTTACAGTGAGTAGAGAAGGAA 57.810 34.615 0.00 0.00 33.43 3.36
4139 5723 2.096248 AGTAGAGAAGGAACAGGCTCG 58.904 52.381 0.00 0.00 32.80 5.03
4149 5733 0.613260 AACAGGCTCGGCAGTAATGA 59.387 50.000 0.00 0.00 0.00 2.57
4195 5779 2.430465 TCAAACTGATGAGGAGCTTGC 58.570 47.619 0.00 0.00 0.00 4.01
4299 5883 7.974675 TGTGCAAAGCAAGTCTAATATAGAAC 58.025 34.615 0.00 0.00 41.47 3.01
4300 5884 7.606073 TGTGCAAAGCAAGTCTAATATAGAACA 59.394 33.333 0.00 0.00 41.47 3.18
4393 5977 6.214191 TGTTTTTGTGCTATTCAAACAGGA 57.786 33.333 0.00 0.00 33.48 3.86
4535 6119 1.523758 GTGTTGGTGGCAGAAGGTAG 58.476 55.000 0.00 0.00 0.00 3.18
4625 6209 4.999469 AAAATCAGGGGCCAAAAAGAAT 57.001 36.364 4.39 0.00 0.00 2.40
4626 6210 3.986996 AATCAGGGGCCAAAAAGAATG 57.013 42.857 4.39 0.00 0.00 2.67
4628 6212 3.534357 TCAGGGGCCAAAAAGAATGTA 57.466 42.857 4.39 0.00 0.00 2.29
4673 6257 4.953940 AAAGCAATAGAGGGCAAAAACA 57.046 36.364 0.00 0.00 0.00 2.83
4675 6259 5.488262 AAGCAATAGAGGGCAAAAACAAT 57.512 34.783 0.00 0.00 0.00 2.71
4691 6275 8.325282 GCAAAAACAATGTGAAAGTAGGTTAAC 58.675 33.333 0.00 0.00 0.00 2.01
4808 6392 4.109675 CCCTGGCCCCAACGTAGG 62.110 72.222 0.00 0.00 0.00 3.18
4812 6396 3.324108 GGCCCCAACGTAGGTCCA 61.324 66.667 0.00 0.00 0.00 4.02
4851 6435 1.285280 TGTCACATAGGAACCAGGGG 58.715 55.000 0.00 0.00 0.00 4.79
4852 6436 1.203376 TGTCACATAGGAACCAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
4871 6455 3.721706 GGTGGGGGTCTCTGGCTG 61.722 72.222 0.00 0.00 0.00 4.85
4875 6459 2.191641 GGGGTCTCTGGCTGCATC 59.808 66.667 0.50 0.00 0.00 3.91
4881 6465 2.352127 GGTCTCTGGCTGCATCAAAAAC 60.352 50.000 0.50 0.00 0.00 2.43
4898 6482 7.467557 TCAAAAACAGAATTCTTGACAATGC 57.532 32.000 4.86 0.00 0.00 3.56
4899 6483 6.198778 TCAAAAACAGAATTCTTGACAATGCG 59.801 34.615 4.86 0.00 0.00 4.73
4918 6507 3.439476 TGCGGTTGAGAAGTACTAGACTC 59.561 47.826 13.97 13.97 37.44 3.36
4919 6508 3.439476 GCGGTTGAGAAGTACTAGACTCA 59.561 47.826 17.48 17.48 37.44 3.41
4924 6513 6.376018 GGTTGAGAAGTACTAGACTCAGACAT 59.624 42.308 19.27 0.00 39.86 3.06
4934 6523 9.491675 GTACTAGACTCAGACATATAGTTAGCA 57.508 37.037 0.00 0.00 0.00 3.49
4937 6526 7.646548 AGACTCAGACATATAGTTAGCACAA 57.353 36.000 0.00 0.00 0.00 3.33
5011 6600 5.413833 CAGTTTATGGAGATTGCTGAAGTGT 59.586 40.000 0.00 0.00 0.00 3.55
5012 6601 5.413833 AGTTTATGGAGATTGCTGAAGTGTG 59.586 40.000 0.00 0.00 0.00 3.82
5016 6605 2.158449 GGAGATTGCTGAAGTGTGAACG 59.842 50.000 0.00 0.00 0.00 3.95
5041 6630 6.263168 GTCAACACATATATTCAGAAAGGGGG 59.737 42.308 0.00 0.00 0.00 5.40
5055 6644 4.045846 AGAAAGGGGGAATTTTGGATCAGA 59.954 41.667 0.00 0.00 0.00 3.27
5066 6655 7.765360 GGAATTTTGGATCAGACAAATATGCAA 59.235 33.333 0.00 0.00 37.62 4.08
5067 6656 9.153721 GAATTTTGGATCAGACAAATATGCAAA 57.846 29.630 0.00 0.00 38.59 3.68
5069 6658 8.899427 TTTTGGATCAGACAAATATGCAAAAA 57.101 26.923 10.28 0.00 43.40 1.94
5115 6704 9.928618 TTTCCACATATTTAATCAGGGTATGAA 57.071 29.630 0.00 0.00 42.53 2.57
5116 6705 8.918202 TCCACATATTTAATCAGGGTATGAAC 57.082 34.615 0.00 0.00 42.53 3.18
5117 6706 8.723365 TCCACATATTTAATCAGGGTATGAACT 58.277 33.333 0.00 0.00 42.53 3.01
5118 6707 9.003658 CCACATATTTAATCAGGGTATGAACTC 57.996 37.037 0.00 0.00 42.53 3.01
5119 6708 9.784531 CACATATTTAATCAGGGTATGAACTCT 57.215 33.333 0.00 0.00 42.53 3.24
5127 6716 8.727100 AATCAGGGTATGAACTCTATATGTGA 57.273 34.615 0.00 0.00 42.53 3.58
5128 6717 8.727100 ATCAGGGTATGAACTCTATATGTGAA 57.273 34.615 0.00 0.00 42.53 3.18
5129 6718 8.183104 TCAGGGTATGAACTCTATATGTGAAG 57.817 38.462 0.00 0.00 32.55 3.02
5130 6719 7.233553 TCAGGGTATGAACTCTATATGTGAAGG 59.766 40.741 0.00 0.00 32.55 3.46
5131 6720 6.498651 AGGGTATGAACTCTATATGTGAAGGG 59.501 42.308 0.00 0.00 33.40 3.95
5132 6721 6.295916 GGGTATGAACTCTATATGTGAAGGGG 60.296 46.154 0.00 0.00 0.00 4.79
5133 6722 6.497259 GGTATGAACTCTATATGTGAAGGGGA 59.503 42.308 0.00 0.00 0.00 4.81
5134 6723 6.678568 ATGAACTCTATATGTGAAGGGGAG 57.321 41.667 0.00 0.00 0.00 4.30
5135 6724 4.345257 TGAACTCTATATGTGAAGGGGAGC 59.655 45.833 0.00 0.00 0.00 4.70
5136 6725 3.243724 ACTCTATATGTGAAGGGGAGCC 58.756 50.000 0.00 0.00 0.00 4.70
5137 6726 3.116551 ACTCTATATGTGAAGGGGAGCCT 60.117 47.826 0.00 0.00 0.00 4.58
5138 6727 3.906846 CTCTATATGTGAAGGGGAGCCTT 59.093 47.826 0.00 0.00 0.00 4.35
5139 6728 3.648067 TCTATATGTGAAGGGGAGCCTTG 59.352 47.826 0.00 0.00 0.00 3.61
5140 6729 0.918983 TATGTGAAGGGGAGCCTTGG 59.081 55.000 0.00 0.00 0.00 3.61
5141 6730 2.361737 GTGAAGGGGAGCCTTGGC 60.362 66.667 2.97 2.97 0.00 4.52
5142 6731 4.033776 TGAAGGGGAGCCTTGGCG 62.034 66.667 5.95 0.00 0.00 5.69
5150 6739 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5151 6740 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5152 6741 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5153 6742 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5154 6743 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5155 6744 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5156 6745 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5161 6750 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5162 6751 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5163 6752 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5164 6753 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5165 6754 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5166 6755 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5167 6756 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5168 6757 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5169 6758 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5170 6759 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5171 6760 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5172 6761 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5173 6762 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5174 6763 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5175 6764 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5190 6779 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5191 6780 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5192 6781 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5193 6782 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5194 6783 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5195 6784 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5196 6785 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5197 6786 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5198 6787 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5199 6788 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5213 6802 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
5214 6803 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
5215 6804 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
5216 6805 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5217 6806 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5218 6807 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5219 6808 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5220 6809 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5221 6810 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5222 6811 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5223 6812 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5224 6813 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5225 6814 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5226 6815 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5227 6816 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5228 6817 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5229 6818 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5230 6819 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5231 6820 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5232 6821 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5233 6822 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5234 6823 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5235 6824 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5236 6825 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5237 6826 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5238 6827 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5239 6828 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5240 6829 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5241 6830 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5242 6831 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5243 6832 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5244 6833 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5245 6834 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5246 6835 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5247 6836 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5248 6837 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5249 6838 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5250 6839 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5255 6844 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5256 6845 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5257 6846 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5258 6847 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5259 6848 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5260 6849 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5261 6850 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5262 6851 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5263 6852 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5264 6853 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5265 6854 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5266 6855 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5267 6856 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5268 6857 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5269 6858 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5270 6859 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5271 6860 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5272 6861 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5273 6862 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5274 6863 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5299 6888 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
5300 6889 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
5301 6890 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
5302 6891 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
5303 6892 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
5304 6893 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
5305 6894 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
5306 6895 0.611618 CATGCACCAGGTTGCCCTTA 60.612 55.000 10.46 0.00 42.25 2.69
5307 6896 0.336048 ATGCACCAGGTTGCCCTTAT 59.664 50.000 10.46 0.00 42.25 1.73
5308 6897 0.611618 TGCACCAGGTTGCCCTTATG 60.612 55.000 10.46 0.00 42.25 1.90
5309 6898 0.323360 GCACCAGGTTGCCCTTATGA 60.323 55.000 0.00 0.00 39.89 2.15
5310 6899 1.890573 GCACCAGGTTGCCCTTATGAA 60.891 52.381 0.00 0.00 39.89 2.57
5315 6904 3.199946 CCAGGTTGCCCTTATGAACTCTA 59.800 47.826 0.00 0.00 39.89 2.43
5360 6968 9.736023 AATATTTTCATCCTTTTAACGATGAGC 57.264 29.630 8.36 0.00 44.19 4.26
5361 6969 6.567687 TTTTCATCCTTTTAACGATGAGCA 57.432 33.333 8.36 0.00 44.19 4.26
5362 6970 6.567687 TTTCATCCTTTTAACGATGAGCAA 57.432 33.333 8.36 1.68 44.19 3.91
5363 6971 6.757897 TTCATCCTTTTAACGATGAGCAAT 57.242 33.333 8.36 0.00 44.19 3.56
5364 6972 6.757897 TCATCCTTTTAACGATGAGCAATT 57.242 33.333 0.00 0.00 39.89 2.32
5365 6973 7.156876 TCATCCTTTTAACGATGAGCAATTT 57.843 32.000 0.00 0.00 39.89 1.82
5366 6974 8.275015 TCATCCTTTTAACGATGAGCAATTTA 57.725 30.769 0.00 0.00 39.89 1.40
5367 6975 8.902806 TCATCCTTTTAACGATGAGCAATTTAT 58.097 29.630 0.00 0.00 39.89 1.40
5368 6976 9.520204 CATCCTTTTAACGATGAGCAATTTATT 57.480 29.630 0.00 0.00 38.53 1.40
5369 6977 9.736023 ATCCTTTTAACGATGAGCAATTTATTC 57.264 29.630 0.00 0.00 0.00 1.75
5370 6978 8.956426 TCCTTTTAACGATGAGCAATTTATTCT 58.044 29.630 0.00 0.00 0.00 2.40
5371 6979 9.573133 CCTTTTAACGATGAGCAATTTATTCTT 57.427 29.630 0.00 0.00 0.00 2.52
5378 6986 9.601217 ACGATGAGCAATTTATTCTTACTAACT 57.399 29.630 0.00 0.00 0.00 2.24
5379 6987 9.855361 CGATGAGCAATTTATTCTTACTAACTG 57.145 33.333 0.00 0.00 0.00 3.16
5381 6989 9.905713 ATGAGCAATTTATTCTTACTAACTGGA 57.094 29.630 0.00 0.00 0.00 3.86
5382 6990 9.383519 TGAGCAATTTATTCTTACTAACTGGAG 57.616 33.333 0.00 0.00 0.00 3.86
5399 7007 5.246307 ACTGGAGTACTTTGCAATACTTCC 58.754 41.667 13.60 14.41 31.69 3.46
5470 7078 8.405850 AGGGTGTTCTCCTCTCTTGATATATAT 58.594 37.037 0.00 0.00 0.00 0.86
5561 7169 9.142014 CAAAACACCATCCCTATTTAATATGGA 57.858 33.333 10.57 10.57 39.60 3.41
5562 7170 9.722317 AAAACACCATCCCTATTTAATATGGAA 57.278 29.630 11.86 0.00 39.60 3.53
5689 7301 1.079658 AGGAGGGCTCTAGAACAAGGT 59.920 52.381 0.00 0.00 0.00 3.50
5725 7337 7.792032 TCAGAAACTATATAGTCCACCAAAGG 58.208 38.462 15.72 0.67 34.99 3.11
5768 7386 1.461268 TCCACTTGTGGCCTGGAGA 60.461 57.895 14.49 0.00 30.27 3.71
5782 7400 3.439857 CTGGAGATCCTGGGTTTGAAA 57.560 47.619 0.00 0.00 36.82 2.69
5806 7424 6.841601 ACAGCCTCCTTGCAGAATTATTATA 58.158 36.000 0.00 0.00 0.00 0.98
5811 7429 7.445402 GCCTCCTTGCAGAATTATTATACAAGA 59.555 37.037 12.52 1.31 36.08 3.02
5846 7464 0.331616 AATTTCCTTCCCCAGACCCG 59.668 55.000 0.00 0.00 0.00 5.28
5849 7467 2.284699 CCTTCCCCAGACCCGACT 60.285 66.667 0.00 0.00 0.00 4.18
5914 7533 4.222810 AGTCCACCAAAGCTTTTGAGTTTT 59.777 37.500 16.58 0.00 0.00 2.43
5924 7543 3.447742 CTTTTGAGTTTTGACAGCCCAC 58.552 45.455 0.00 0.00 0.00 4.61
5928 7547 3.826524 TGAGTTTTGACAGCCCACATAA 58.173 40.909 0.00 0.00 0.00 1.90
5934 7553 1.165270 GACAGCCCACATAACACCAC 58.835 55.000 0.00 0.00 0.00 4.16
5960 7579 4.666512 ACAATCCAGTAGTCCAGCAATTT 58.333 39.130 0.00 0.00 0.00 1.82
5961 7580 5.079643 ACAATCCAGTAGTCCAGCAATTTT 58.920 37.500 0.00 0.00 0.00 1.82
5994 7621 6.591935 TGAAGTATCATTGGGGTTCTCATAC 58.408 40.000 0.00 0.00 0.00 2.39
6094 7723 3.904136 AGCAATTGTGAGTGTAAGTGC 57.096 42.857 7.40 0.00 45.20 4.40
6206 7844 4.223923 CCATTAAGACTGGTCCTCTCTGTT 59.776 45.833 0.00 0.00 0.00 3.16
6288 7945 4.102524 AGTGAGTGTGGATGTAAACCAGAA 59.897 41.667 0.00 0.00 40.56 3.02
6292 7949 3.880490 GTGTGGATGTAAACCAGAACACA 59.120 43.478 0.00 0.00 40.56 3.72
6391 8048 3.498777 GCTCACTAAGACCACAAAGAACC 59.501 47.826 0.00 0.00 0.00 3.62
6394 8051 4.879545 TCACTAAGACCACAAAGAACCAAC 59.120 41.667 0.00 0.00 0.00 3.77
6416 8076 0.971386 GAACTTACCCCGGAGTGTCA 59.029 55.000 0.73 0.00 0.00 3.58
6419 8079 3.042059 ACTTACCCCGGAGTGTCATAT 57.958 47.619 0.73 0.00 0.00 1.78
6425 8086 2.289694 CCCCGGAGTGTCATATTGATCC 60.290 54.545 0.73 0.00 0.00 3.36
6437 8098 6.873605 TGTCATATTGATCCAGTAATAAGCGG 59.126 38.462 0.00 0.00 0.00 5.52
6438 8099 6.874134 GTCATATTGATCCAGTAATAAGCGGT 59.126 38.462 0.00 0.00 0.00 5.68
6444 8105 4.563140 TCCAGTAATAAGCGGTTTCCTT 57.437 40.909 4.64 0.00 0.00 3.36
6445 8106 4.258543 TCCAGTAATAAGCGGTTTCCTTG 58.741 43.478 4.64 0.00 0.00 3.61
6455 8116 3.179339 TTTCCTTGGACGGGGGCA 61.179 61.111 0.00 0.00 0.00 5.36
6461 8122 2.762969 CTTGGACGGGGGCATGAACA 62.763 60.000 0.00 0.00 0.00 3.18
6472 8133 4.463891 GGGGGCATGAACAATCCATATAAG 59.536 45.833 0.00 0.00 0.00 1.73
6478 8139 7.249147 GCATGAACAATCCATATAAGCAGATC 58.751 38.462 0.00 0.00 0.00 2.75
6486 8147 6.864151 TCCATATAAGCAGATCACATAGCT 57.136 37.500 0.00 0.00 39.37 3.32
6487 8148 6.871844 TCCATATAAGCAGATCACATAGCTC 58.128 40.000 0.00 0.00 36.07 4.09
6497 8158 1.621317 TCACATAGCTCGGTCCAAACA 59.379 47.619 0.00 0.00 0.00 2.83
6523 8184 0.603569 ACTCGAATCGAACAGCACCT 59.396 50.000 6.84 0.00 34.74 4.00
6527 8188 1.798223 CGAATCGAACAGCACCTTTCA 59.202 47.619 0.00 0.00 0.00 2.69
6531 8192 1.221466 CGAACAGCACCTTTCAGCGA 61.221 55.000 0.00 0.00 35.48 4.93
6535 8196 1.148273 AGCACCTTTCAGCGACCAA 59.852 52.632 0.00 0.00 35.48 3.67
6536 8197 1.166531 AGCACCTTTCAGCGACCAAC 61.167 55.000 0.00 0.00 35.48 3.77
6539 8200 1.403679 CACCTTTCAGCGACCAACAAA 59.596 47.619 0.00 0.00 0.00 2.83
6540 8201 2.034558 CACCTTTCAGCGACCAACAAAT 59.965 45.455 0.00 0.00 0.00 2.32
6542 8203 3.252458 ACCTTTCAGCGACCAACAAATAC 59.748 43.478 0.00 0.00 0.00 1.89
6545 8234 2.147958 TCAGCGACCAACAAATACCAC 58.852 47.619 0.00 0.00 0.00 4.16
6623 8312 2.126888 CGCCACAATTGCGTCCAC 60.127 61.111 5.05 0.00 46.59 4.02
6653 8342 1.389106 ACGCGAGCTGACGAATTAAAC 59.611 47.619 15.93 0.00 35.09 2.01
6654 8343 1.388768 CGCGAGCTGACGAATTAAACA 59.611 47.619 0.00 0.00 35.09 2.83
6655 8344 2.759038 GCGAGCTGACGAATTAAACAC 58.241 47.619 0.00 0.00 35.09 3.32
6656 8345 2.779969 GCGAGCTGACGAATTAAACACG 60.780 50.000 0.00 0.00 35.09 4.49
6657 8346 2.407361 CGAGCTGACGAATTAAACACGT 59.593 45.455 0.00 0.00 42.84 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.730705 CATTTTGATATCATCTACCCATGTACT 57.269 33.333 6.17 0.00 0.00 2.73
1 2 8.950210 CCATTTTGATATCATCTACCCATGTAC 58.050 37.037 6.17 0.00 0.00 2.90
33 34 9.283768 TGTGCAAAATGGAATATATATTCGTCT 57.716 29.630 23.09 11.43 42.25 4.18
48 49 9.859427 TTCTAATTCTTCTAATGTGCAAAATGG 57.141 29.630 0.00 0.00 0.00 3.16
74 75 3.873910 CCGGTTTGACTATGTGAGGATT 58.126 45.455 0.00 0.00 0.00 3.01
91 92 2.180276 GGATATCATGAGGTAGCCGGT 58.820 52.381 1.90 0.00 0.00 5.28
125 126 6.704493 CGTATAACCAGATTAGGCAAGCTTAA 59.296 38.462 0.00 0.00 0.00 1.85
168 169 6.989759 TGTGATTACTTTAGCAAACTCAGACA 59.010 34.615 0.00 0.00 0.00 3.41
202 207 7.004555 TCTTGTTTACTTGAGAATAGCAGGA 57.995 36.000 0.00 0.00 0.00 3.86
255 260 7.765695 AGAAAATGCTGAAGACCTTAAATCA 57.234 32.000 0.00 0.00 0.00 2.57
276 281 2.050144 AGCCAGAGAGGTTCACAAGAA 58.950 47.619 0.00 0.00 40.61 2.52
281 286 2.262423 AAACAGCCAGAGAGGTTCAC 57.738 50.000 0.00 0.00 40.61 3.18
282 287 3.297134 AAAAACAGCCAGAGAGGTTCA 57.703 42.857 0.00 0.00 40.61 3.18
283 288 4.156739 CCATAAAAACAGCCAGAGAGGTTC 59.843 45.833 0.00 0.00 40.61 3.62
285 292 3.074538 ACCATAAAAACAGCCAGAGAGGT 59.925 43.478 0.00 0.00 40.61 3.85
294 301 4.782019 TCACATGGACCATAAAAACAGC 57.218 40.909 6.67 0.00 0.00 4.40
383 390 8.759782 ACAGCAATGGTAGTATCTAGTACTTTT 58.240 33.333 0.00 0.00 40.80 2.27
384 391 8.307582 ACAGCAATGGTAGTATCTAGTACTTT 57.692 34.615 0.00 0.00 40.80 2.66
425 432 6.067217 AGGTAGAAACAGGTCATAAGCAAT 57.933 37.500 0.00 0.00 0.00 3.56
550 557 3.004419 GGACTAGGACAAAGGTTTGCAAC 59.996 47.826 0.00 0.00 41.79 4.17
570 577 2.046023 CATGACGCCTTGCCTGGA 60.046 61.111 0.00 0.00 0.00 3.86
619 626 1.584724 TCCCCAAAGATCTGGAGGTC 58.415 55.000 0.00 0.00 38.96 3.85
664 671 5.560724 GCCATAATCTTAGTGAATGGCCTA 58.439 41.667 17.24 0.00 46.11 3.93
928 938 0.320374 TTTGGTCGACTAGGCAGTGG 59.680 55.000 16.46 0.00 34.21 4.00
932 942 1.000506 GACACTTTGGTCGACTAGGCA 59.999 52.381 16.46 1.36 0.00 4.75
968 978 8.665685 GGTATTATTATTGAACGGAAGGCTATG 58.334 37.037 0.00 0.00 0.00 2.23
969 979 7.548075 CGGTATTATTATTGAACGGAAGGCTAT 59.452 37.037 0.00 0.00 0.00 2.97
980 990 8.918658 GCGACATAACTCGGTATTATTATTGAA 58.081 33.333 0.00 0.00 34.06 2.69
981 991 7.271868 CGCGACATAACTCGGTATTATTATTGA 59.728 37.037 0.00 0.00 34.06 2.57
991 1001 1.297819 CGCGCGACATAACTCGGTA 60.298 57.895 28.94 0.00 34.06 4.02
995 1005 2.860628 CTGCCGCGCGACATAACTC 61.861 63.158 34.63 9.59 0.00 3.01
1063 1073 8.696043 TTAATTATCATGGCAGCTGACTTTAT 57.304 30.769 22.80 14.01 0.00 1.40
1255 1265 7.895759 ACCTGCAAACTACACATATCATTTTT 58.104 30.769 0.00 0.00 0.00 1.94
1283 1293 8.938801 TCATATTATCTAACACAATGCCCAAT 57.061 30.769 0.00 0.00 0.00 3.16
1284 1294 8.759481 TTCATATTATCTAACACAATGCCCAA 57.241 30.769 0.00 0.00 0.00 4.12
1285 1295 8.759481 TTTCATATTATCTAACACAATGCCCA 57.241 30.769 0.00 0.00 0.00 5.36
1330 1340 9.587461 CGAGAGTCATCTTCTTTTTAAAGTTTC 57.413 33.333 0.00 0.00 35.30 2.78
1389 1399 7.076362 CGTATGCGTCACTAACTATGATTACT 58.924 38.462 0.00 0.00 0.00 2.24
1465 1476 8.787852 ACTTCTTTTAGAAACATCATTCAGACC 58.212 33.333 0.00 0.00 33.19 3.85
1483 1501 8.877195 TCTGTGGAAGTTAGGTATACTTCTTTT 58.123 33.333 13.52 0.00 46.75 2.27
1538 1557 8.459911 TTGTGACCTATATCTCTCGTATTTCA 57.540 34.615 0.00 0.00 0.00 2.69
1653 1673 8.712285 TGTACAAACAAGATACTAACATAGGC 57.288 34.615 0.00 0.00 30.91 3.93
1699 1719 5.564550 AGCAAAACAGACTGATTATCCTGT 58.435 37.500 10.08 0.00 41.14 4.00
1710 1737 5.585047 ACTCGAACTTTAAGCAAAACAGACT 59.415 36.000 0.00 0.00 0.00 3.24
1716 1743 6.252655 GCTTCAAACTCGAACTTTAAGCAAAA 59.747 34.615 15.21 0.00 38.33 2.44
1773 1801 4.576216 ACGTAGAGGATGTTCATAGCAG 57.424 45.455 0.00 0.00 0.00 4.24
1793 1821 9.059260 TCTGGGTAGTTTTGTTTATTCAGTTAC 57.941 33.333 0.00 0.00 0.00 2.50
1804 1832 8.080363 TGGTTAATTTTCTGGGTAGTTTTGTT 57.920 30.769 0.00 0.00 0.00 2.83
1834 1862 5.396213 GCTGGATATGAGATATTCCAGGGAC 60.396 48.000 16.92 1.74 38.97 4.46
1839 1867 5.188555 GTCAGGCTGGATATGAGATATTCCA 59.811 44.000 15.73 0.00 0.00 3.53
1840 1868 5.396213 GGTCAGGCTGGATATGAGATATTCC 60.396 48.000 15.73 0.00 0.00 3.01
1841 1869 5.396213 GGGTCAGGCTGGATATGAGATATTC 60.396 48.000 15.73 0.00 0.00 1.75
1842 1870 4.472833 GGGTCAGGCTGGATATGAGATATT 59.527 45.833 15.73 0.00 0.00 1.28
1843 1871 4.036518 GGGTCAGGCTGGATATGAGATAT 58.963 47.826 15.73 0.00 0.00 1.63
1844 1872 3.445008 GGGTCAGGCTGGATATGAGATA 58.555 50.000 15.73 0.00 0.00 1.98
1845 1873 2.264455 GGGTCAGGCTGGATATGAGAT 58.736 52.381 15.73 0.00 0.00 2.75
1846 1874 1.722034 GGGTCAGGCTGGATATGAGA 58.278 55.000 15.73 0.00 0.00 3.27
1847 1875 0.689623 GGGGTCAGGCTGGATATGAG 59.310 60.000 15.73 0.00 0.00 2.90
1848 1876 1.121407 CGGGGTCAGGCTGGATATGA 61.121 60.000 15.73 0.00 0.00 2.15
1849 1877 1.372683 CGGGGTCAGGCTGGATATG 59.627 63.158 15.73 0.00 0.00 1.78
1850 1878 2.520536 GCGGGGTCAGGCTGGATAT 61.521 63.158 15.73 0.00 0.00 1.63
1856 1884 2.664835 ATAGCTAGCGGGGTCAGGCT 62.665 60.000 9.55 0.00 43.12 4.58
1863 1891 5.148651 ACACTTTTATATAGCTAGCGGGG 57.851 43.478 9.55 0.00 0.00 5.73
1884 1912 6.990939 GGGTGGTCAGGTATCTTCTTTTATAC 59.009 42.308 0.00 0.00 0.00 1.47
1923 1951 6.299141 TCTACAGAACAAAAGGAAGAATGCT 58.701 36.000 0.00 0.00 0.00 3.79
1933 1961 7.134815 CAGGACACAATTCTACAGAACAAAAG 58.865 38.462 0.00 0.00 36.80 2.27
1939 1967 3.327757 AGCCAGGACACAATTCTACAGAA 59.672 43.478 0.00 0.00 38.56 3.02
1948 1976 2.254152 TAGAGGAGCCAGGACACAAT 57.746 50.000 0.00 0.00 0.00 2.71
2018 2046 6.886459 CCACCATAACCTTATAAGATGGGATG 59.114 42.308 24.78 18.01 41.21 3.51
2113 2141 7.386848 GGAAGAAACTATGCAGTACTGTGTAAA 59.613 37.037 23.44 5.87 33.48 2.01
2155 2183 8.557029 CACTCGTAGGTTTCTTAAGAAATTTGT 58.443 33.333 28.46 18.09 44.69 2.83
2351 2379 6.882678 GGTGCTAGAAAAGAATTAGGTTACCA 59.117 38.462 3.51 0.00 0.00 3.25
2379 2407 6.213600 ACAAAGAGACTCAGCTTAAGGGAATA 59.786 38.462 5.02 0.00 0.00 1.75
2381 2409 4.348168 ACAAAGAGACTCAGCTTAAGGGAA 59.652 41.667 5.02 0.00 0.00 3.97
2390 2418 5.391416 GGCAATCTAAACAAAGAGACTCAGC 60.391 44.000 5.02 0.00 0.00 4.26
2393 2421 6.749923 ATGGCAATCTAAACAAAGAGACTC 57.250 37.500 0.00 0.00 0.00 3.36
2420 2448 3.324556 CAGGAAAACCCATGAATGTTGGT 59.675 43.478 0.00 0.00 37.41 3.67
2421 2449 3.324556 ACAGGAAAACCCATGAATGTTGG 59.675 43.478 0.00 0.00 37.41 3.77
2432 2461 4.941873 CCAACAGTATCTACAGGAAAACCC 59.058 45.833 0.00 0.00 0.00 4.11
2433 2462 4.941873 CCCAACAGTATCTACAGGAAAACC 59.058 45.833 0.00 0.00 0.00 3.27
2454 2483 4.581409 TGCTTATTTAATTTCCGGCTACCC 59.419 41.667 0.00 0.00 0.00 3.69
2534 2564 5.197451 CAGAGTACCTAGTCCATGAGAAGT 58.803 45.833 0.00 0.00 0.00 3.01
2661 2847 4.143543 TGTCCTGATGCTTTTCATGTTGA 58.856 39.130 0.00 0.00 35.05 3.18
2662 2848 4.508461 TGTCCTGATGCTTTTCATGTTG 57.492 40.909 0.00 0.00 35.05 3.33
2663 2849 4.560108 GCTTGTCCTGATGCTTTTCATGTT 60.560 41.667 0.00 0.00 35.05 2.71
2664 2850 3.057033 GCTTGTCCTGATGCTTTTCATGT 60.057 43.478 0.00 0.00 35.05 3.21
2765 2951 3.312828 CATTAGCTGCTTAGCTCTACCG 58.687 50.000 7.79 0.00 45.00 4.02
2800 2986 3.504520 TGTCGTCTGAGCAATACTGTACA 59.495 43.478 0.00 0.00 0.00 2.90
2804 2990 6.834959 ATAAATGTCGTCTGAGCAATACTG 57.165 37.500 0.00 0.00 0.00 2.74
2805 2991 7.334421 ACAAATAAATGTCGTCTGAGCAATACT 59.666 33.333 0.00 0.00 0.00 2.12
2806 2992 7.426456 CACAAATAAATGTCGTCTGAGCAATAC 59.574 37.037 0.00 0.00 0.00 1.89
2807 2993 7.119116 ACACAAATAAATGTCGTCTGAGCAATA 59.881 33.333 0.00 0.00 0.00 1.90
2808 2994 6.072508 ACACAAATAAATGTCGTCTGAGCAAT 60.073 34.615 0.00 0.00 0.00 3.56
2829 3015 8.050778 ACAGAATGAGTTTTCAGTTTAACACA 57.949 30.769 0.00 0.00 39.69 3.72
2830 3016 8.911247 AACAGAATGAGTTTTCAGTTTAACAC 57.089 30.769 0.00 0.00 39.69 3.32
2867 3054 5.212532 AGCACAAACTTTTGGCATTCATA 57.787 34.783 13.92 0.00 42.34 2.15
2881 3068 5.008118 GCTTCTGGATATTCCTAGCACAAAC 59.992 44.000 9.47 0.00 37.46 2.93
2885 3072 4.342862 TGCTTCTGGATATTCCTAGCAC 57.657 45.455 11.73 0.00 39.42 4.40
2889 3076 5.045213 TGTGGTTTGCTTCTGGATATTCCTA 60.045 40.000 0.00 0.00 37.46 2.94
2899 3086 0.040958 GCGTCTGTGGTTTGCTTCTG 60.041 55.000 0.00 0.00 0.00 3.02
2916 3103 3.983344 CAGGTTCCTTCAATTTTTCTGCG 59.017 43.478 0.00 0.00 0.00 5.18
2970 3158 7.764443 ACACAGCACTTATATGTAACCTAACAG 59.236 37.037 0.00 0.00 31.70 3.16
2977 3165 7.821595 TGTGTACACAGCACTTATATGTAAC 57.178 36.000 24.62 0.00 36.21 2.50
2998 3186 6.522054 CCCTTATACAATAGGGTACACTGTG 58.478 44.000 8.23 8.49 45.12 3.66
3008 3196 5.070685 GCTTGGAACCCCTTATACAATAGG 58.929 45.833 0.00 0.00 0.00 2.57
3009 3197 5.690865 TGCTTGGAACCCCTTATACAATAG 58.309 41.667 0.00 0.00 0.00 1.73
3010 3198 5.718801 TGCTTGGAACCCCTTATACAATA 57.281 39.130 0.00 0.00 0.00 1.90
3028 3216 4.385310 GGTACAGGTGAGGGAAATATGCTT 60.385 45.833 0.00 0.00 0.00 3.91
3050 3238 5.675538 GCCAAAGGCCTGTATATATAGAGG 58.324 45.833 25.11 25.11 44.06 3.69
3086 3274 5.874892 GCTGTTAGAGTAATAGCGACTTG 57.125 43.478 0.44 0.00 41.78 3.16
3094 3282 7.047891 CAGGAAATGTGGCTGTTAGAGTAATA 58.952 38.462 0.00 0.00 0.00 0.98
3100 3288 2.040278 AGCAGGAAATGTGGCTGTTAGA 59.960 45.455 0.00 0.00 34.83 2.10
3101 3289 2.163010 CAGCAGGAAATGTGGCTGTTAG 59.837 50.000 0.00 0.00 46.47 2.34
3127 3315 7.383029 TGGTACAAAATCAGTTAGTCGTAAGTG 59.617 37.037 0.00 0.00 36.80 3.16
3161 3349 3.879892 GTCAGAGGAACCTATGGAAATGC 59.120 47.826 14.25 0.00 36.09 3.56
3184 3372 1.200716 CACAAGTAGGCAGCATGTTGG 59.799 52.381 11.80 0.00 39.31 3.77
3199 3387 4.082245 AGACAAAAACCTTGGTGTCACAAG 60.082 41.667 5.12 6.73 45.71 3.16
3213 3401 5.195001 TGACCAATTAGCCAGACAAAAAC 57.805 39.130 0.00 0.00 0.00 2.43
3250 3438 7.553881 TGGTGATACTTTCTTAATAGCAAGC 57.446 36.000 0.00 0.00 28.98 4.01
3312 3501 7.716612 AGGAGTTTTAAGTTGAAGAAACATGG 58.283 34.615 0.00 0.00 41.61 3.66
3412 3601 8.256605 ACAGGACTGCTCATACATGATATAATC 58.743 37.037 0.00 0.00 36.02 1.75
3417 3608 5.604565 CAACAGGACTGCTCATACATGATA 58.395 41.667 0.00 0.00 36.02 2.15
3429 3620 1.085091 CTGATCAGCAACAGGACTGC 58.915 55.000 10.38 0.00 40.24 4.40
3455 3648 8.740123 ACAAAATAACCAATACGATATCACCA 57.260 30.769 3.12 0.00 0.00 4.17
3460 3653 9.841295 ACCTGTACAAAATAACCAATACGATAT 57.159 29.630 0.00 0.00 0.00 1.63
3462 3655 8.455682 CAACCTGTACAAAATAACCAATACGAT 58.544 33.333 0.00 0.00 0.00 3.73
3465 3658 7.810759 CACCAACCTGTACAAAATAACCAATAC 59.189 37.037 0.00 0.00 0.00 1.89
3467 3660 6.551601 TCACCAACCTGTACAAAATAACCAAT 59.448 34.615 0.00 0.00 0.00 3.16
3560 3753 4.820173 AGTCTGCATGTCATGTATGATTGG 59.180 41.667 14.26 0.00 39.30 3.16
3583 3778 8.449251 TGTGCTATATGATAAATTGTTCAGCA 57.551 30.769 0.00 0.00 0.00 4.41
3604 3799 1.804151 TGAGTAGTTTGCCGATTGTGC 59.196 47.619 0.00 0.00 0.00 4.57
3633 3828 7.309744 GGAACAATTGTGGAAAGATTGATACCA 60.310 37.037 12.82 0.00 35.36 3.25
3649 3846 2.949451 TTTGTGCGTGGAACAATTGT 57.051 40.000 4.92 4.92 44.16 2.71
3712 5296 0.815615 GCGTGCCTATTTGCTAGCCT 60.816 55.000 13.29 0.00 0.00 4.58
3721 5305 0.539051 AGCAGAGAAGCGTGCCTATT 59.461 50.000 0.00 0.00 40.81 1.73
3726 5310 1.645034 TGAATAGCAGAGAAGCGTGC 58.355 50.000 0.00 0.00 40.15 5.34
3729 5313 4.025061 CCTTGATTGAATAGCAGAGAAGCG 60.025 45.833 0.00 0.00 40.15 4.68
3740 5324 3.090790 TGCTTGCAGCCTTGATTGAATA 58.909 40.909 5.82 0.00 41.51 1.75
3752 5336 5.352643 AAATTTGAAAATCTGCTTGCAGC 57.647 34.783 16.91 0.00 42.82 5.25
3753 5337 9.161684 GTTTAAAATTTGAAAATCTGCTTGCAG 57.838 29.630 15.74 15.74 0.00 4.41
3804 5388 7.275560 GTGGCATGTTATGGAATTTCTGTTTAC 59.724 37.037 0.00 0.00 0.00 2.01
3849 5433 8.512138 GCCTACCACTAAATGCGATTATAAAAT 58.488 33.333 0.00 0.00 0.00 1.82
3856 5440 3.275617 TGCCTACCACTAAATGCGATT 57.724 42.857 0.00 0.00 0.00 3.34
3859 5443 2.942376 TGATTGCCTACCACTAAATGCG 59.058 45.455 0.00 0.00 0.00 4.73
3867 5451 6.543831 AGTTAGATCATTTGATTGCCTACCAC 59.456 38.462 0.00 0.00 34.37 4.16
3870 5454 6.995091 AGGAGTTAGATCATTTGATTGCCTAC 59.005 38.462 0.00 0.00 34.37 3.18
3886 5470 6.924060 GCGAGCATATAGAAAAAGGAGTTAGA 59.076 38.462 0.00 0.00 0.00 2.10
3890 5474 5.283457 AGCGAGCATATAGAAAAAGGAGT 57.717 39.130 0.00 0.00 0.00 3.85
3920 5504 7.996282 GATAGACTATCAACAGGCGGAACGG 62.996 52.000 16.21 0.00 43.21 4.44
3969 5553 2.653726 TCCACCATTGCATCCATACAC 58.346 47.619 0.00 0.00 0.00 2.90
3973 5557 2.829720 GCATATCCACCATTGCATCCAT 59.170 45.455 0.00 0.00 35.22 3.41
3997 5581 5.246203 GGTCTCTACAGGCCAATATCATGTA 59.754 44.000 5.01 1.60 44.95 2.29
4010 5594 1.691976 TGTGTGGTTGGTCTCTACAGG 59.308 52.381 0.00 0.00 0.00 4.00
4060 5644 5.304101 TGTGATGCCTTATTTGTTGACCTTT 59.696 36.000 0.00 0.00 0.00 3.11
4117 5701 3.093057 GAGCCTGTTCCTTCTCTACTCA 58.907 50.000 0.00 0.00 0.00 3.41
4123 5707 1.448717 GCCGAGCCTGTTCCTTCTC 60.449 63.158 0.00 0.00 0.00 2.87
4125 5709 1.743252 CTGCCGAGCCTGTTCCTTC 60.743 63.158 0.00 0.00 0.00 3.46
4131 5715 0.108138 GTCATTACTGCCGAGCCTGT 60.108 55.000 0.00 0.00 0.00 4.00
4139 5723 4.566004 TGTAGTTCAGTGTCATTACTGCC 58.434 43.478 0.00 0.00 45.94 4.85
4149 5733 8.362464 TGTAGATATTTCCTGTAGTTCAGTGT 57.638 34.615 0.00 0.00 42.19 3.55
4174 5758 3.015327 GCAAGCTCCTCATCAGTTTGAT 58.985 45.455 0.00 0.00 37.65 2.57
4195 5779 4.007659 ACTGTTCTAACTATTTTGGGCGG 58.992 43.478 0.00 0.00 0.00 6.13
4273 5857 7.776933 TCTATATTAGACTTGCTTTGCACAG 57.223 36.000 0.00 0.00 38.71 3.66
4299 5883 7.655236 TTTCATTGCCTGAAACATTTGTATG 57.345 32.000 7.30 0.00 46.45 2.39
4393 5977 1.806542 CATAAACTGTCTGCCGTGCTT 59.193 47.619 0.00 0.00 0.00 3.91
4535 6119 1.468054 GCATGAACTTTCATCGGTGCC 60.468 52.381 0.00 0.00 45.62 5.01
4566 6150 7.446931 CCGTCACTGCCTATATCATATCTATCT 59.553 40.741 0.00 0.00 0.00 1.98
4659 6243 5.362430 ACTTTCACATTGTTTTTGCCCTCTA 59.638 36.000 0.00 0.00 0.00 2.43
4663 6247 4.749598 CCTACTTTCACATTGTTTTTGCCC 59.250 41.667 0.00 0.00 0.00 5.36
4675 6259 8.867097 ACTCTATCAAGTTAACCTACTTTCACA 58.133 33.333 0.88 0.00 36.24 3.58
4691 6275 7.818493 TCTGTGATTCGAAAACTCTATCAAG 57.182 36.000 0.00 1.16 0.00 3.02
4704 6288 7.967890 ATGCACATATATTTCTGTGATTCGA 57.032 32.000 13.78 0.00 44.35 3.71
4819 6403 2.472695 TGTGACATTGTGCCTACCTC 57.527 50.000 0.00 0.00 0.00 3.85
4822 6406 4.137116 TCCTATGTGACATTGTGCCTAC 57.863 45.455 2.29 0.00 0.00 3.18
4851 6435 2.689034 CCAGAGACCCCCACCCTC 60.689 72.222 0.00 0.00 0.00 4.30
4869 6453 6.698329 TGTCAAGAATTCTGTTTTTGATGCAG 59.302 34.615 9.17 0.00 31.28 4.41
4871 6455 7.467557 TTGTCAAGAATTCTGTTTTTGATGC 57.532 32.000 9.17 0.00 31.28 3.91
4875 6459 6.349426 CGCATTGTCAAGAATTCTGTTTTTG 58.651 36.000 9.17 3.13 0.00 2.44
4881 6465 3.837213 ACCGCATTGTCAAGAATTCTG 57.163 42.857 9.17 3.74 0.00 3.02
4898 6482 4.936411 TCTGAGTCTAGTACTTCTCAACCG 59.064 45.833 18.62 11.68 39.07 4.44
4899 6483 5.706369 TGTCTGAGTCTAGTACTTCTCAACC 59.294 44.000 18.62 14.25 39.07 3.77
4934 6523 9.461312 TGGTTGCTTTAGATTAGATGTTATTGT 57.539 29.630 0.00 0.00 0.00 2.71
4937 6526 9.071276 CCATGGTTGCTTTAGATTAGATGTTAT 57.929 33.333 2.57 0.00 0.00 1.89
4944 6533 4.536765 ACCCCATGGTTGCTTTAGATTAG 58.463 43.478 11.73 0.00 44.75 1.73
4974 6563 4.290985 TCCATAAACTGTTCCCCAGATCAA 59.709 41.667 0.00 0.00 44.49 2.57
4993 6582 3.708403 TCACACTTCAGCAATCTCCAT 57.292 42.857 0.00 0.00 0.00 3.41
5011 6600 8.541133 TTTCTGAATATATGTGTTGACGTTCA 57.459 30.769 0.00 0.00 0.00 3.18
5012 6601 8.116753 CCTTTCTGAATATATGTGTTGACGTTC 58.883 37.037 0.00 0.00 0.00 3.95
5016 6605 6.263168 CCCCCTTTCTGAATATATGTGTTGAC 59.737 42.308 0.00 0.00 0.00 3.18
5041 6630 8.706492 TTGCATATTTGTCTGATCCAAAATTC 57.294 30.769 0.00 0.00 35.60 2.17
5115 6704 3.116551 AGGCTCCCCTTCACATATAGAGT 60.117 47.826 0.00 0.00 38.74 3.24
5116 6705 3.515562 AGGCTCCCCTTCACATATAGAG 58.484 50.000 0.00 0.00 38.74 2.43
5117 6706 3.637821 AGGCTCCCCTTCACATATAGA 57.362 47.619 0.00 0.00 38.74 1.98
5132 6721 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5133 6722 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5134 6723 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5135 6724 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5136 6725 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5137 6726 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5138 6727 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5139 6728 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5143 6732 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5144 6733 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5145 6734 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5146 6735 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5147 6736 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5148 6737 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
5149 6738 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5150 6739 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5151 6740 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5152 6741 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5153 6742 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5154 6743 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5155 6744 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5156 6745 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5157 6746 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5158 6747 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5170 6759 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5171 6760 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5172 6761 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5173 6762 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5174 6763 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5175 6764 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5176 6765 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5177 6766 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5178 6767 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5179 6768 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5180 6769 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5181 6770 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5182 6771 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5183 6772 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5184 6773 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5185 6774 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5186 6775 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5187 6776 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5188 6777 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
5189 6778 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
5190 6779 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
5191 6780 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
5203 6792 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5204 6793 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5205 6794 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5206 6795 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
5207 6796 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
5208 6797 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5209 6798 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5210 6799 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5211 6800 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5212 6801 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5213 6802 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5214 6803 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5215 6804 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5216 6805 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5217 6806 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5218 6807 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5219 6808 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5220 6809 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5221 6810 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5222 6811 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5223 6812 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5224 6813 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5225 6814 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5226 6815 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5227 6816 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5228 6817 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5229 6818 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5239 6828 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5240 6829 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5241 6830 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5242 6831 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5243 6832 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5244 6833 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5245 6834 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5246 6835 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5247 6836 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5248 6837 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5249 6838 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5250 6839 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5251 6840 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5252 6841 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5253 6842 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5254 6843 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5255 6844 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5256 6845 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
5257 6846 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
5269 6858 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5272 6861 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5273 6862 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5274 6863 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5275 6864 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5281 6870 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
5282 6871 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
5283 6872 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
5284 6873 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
5285 6874 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
5297 6886 7.328737 CGTACATATAGAGTTCATAAGGGCAAC 59.671 40.741 0.00 0.00 0.00 4.17
5298 6887 7.231925 TCGTACATATAGAGTTCATAAGGGCAA 59.768 37.037 0.00 0.00 0.00 4.52
5299 6888 6.717997 TCGTACATATAGAGTTCATAAGGGCA 59.282 38.462 0.00 0.00 0.00 5.36
5300 6889 7.154435 TCGTACATATAGAGTTCATAAGGGC 57.846 40.000 0.00 0.00 0.00 5.19
5352 6960 9.601217 AGTTAGTAAGAATAAATTGCTCATCGT 57.399 29.630 0.00 0.00 0.00 3.73
5353 6961 9.855361 CAGTTAGTAAGAATAAATTGCTCATCG 57.145 33.333 0.00 0.00 0.00 3.84
5355 6963 9.905713 TCCAGTTAGTAAGAATAAATTGCTCAT 57.094 29.630 0.00 0.00 0.00 2.90
5356 6964 9.383519 CTCCAGTTAGTAAGAATAAATTGCTCA 57.616 33.333 0.00 0.00 0.00 4.26
5357 6965 9.384764 ACTCCAGTTAGTAAGAATAAATTGCTC 57.615 33.333 0.00 0.00 0.00 4.26
5364 6972 9.649167 GCAAAGTACTCCAGTTAGTAAGAATAA 57.351 33.333 0.00 0.00 33.85 1.40
5365 6973 8.809066 TGCAAAGTACTCCAGTTAGTAAGAATA 58.191 33.333 0.00 0.00 33.85 1.75
5366 6974 7.676947 TGCAAAGTACTCCAGTTAGTAAGAAT 58.323 34.615 0.00 0.00 33.85 2.40
5367 6975 7.058023 TGCAAAGTACTCCAGTTAGTAAGAA 57.942 36.000 0.00 0.00 33.85 2.52
5368 6976 6.659745 TGCAAAGTACTCCAGTTAGTAAGA 57.340 37.500 0.00 0.00 33.85 2.10
5369 6977 7.907214 ATTGCAAAGTACTCCAGTTAGTAAG 57.093 36.000 1.71 0.00 33.85 2.34
5370 6978 8.591072 AGTATTGCAAAGTACTCCAGTTAGTAA 58.409 33.333 1.71 0.00 33.85 2.24
5371 6979 8.130671 AGTATTGCAAAGTACTCCAGTTAGTA 57.869 34.615 1.71 0.00 0.00 1.82
5372 6980 7.005709 AGTATTGCAAAGTACTCCAGTTAGT 57.994 36.000 1.71 0.00 0.00 2.24
5373 6981 7.064728 GGAAGTATTGCAAAGTACTCCAGTTAG 59.935 40.741 12.05 0.00 35.98 2.34
5374 6982 6.877322 GGAAGTATTGCAAAGTACTCCAGTTA 59.123 38.462 12.05 0.00 35.98 2.24
5375 6983 5.705905 GGAAGTATTGCAAAGTACTCCAGTT 59.294 40.000 12.05 0.00 35.98 3.16
5376 6984 5.221843 TGGAAGTATTGCAAAGTACTCCAGT 60.222 40.000 17.94 5.23 45.87 4.00
5377 6985 5.245531 TGGAAGTATTGCAAAGTACTCCAG 58.754 41.667 17.94 0.00 45.87 3.86
5378 6986 5.235850 TGGAAGTATTGCAAAGTACTCCA 57.764 39.130 17.94 17.94 45.87 3.86
5389 6997 8.084684 ACTTCTTTCTTGAAATGGAAGTATTGC 58.915 33.333 19.79 0.00 40.65 3.56
5470 7078 7.828717 TGAATTTCTATGTGGCTCATTCTTGTA 59.171 33.333 7.43 0.00 37.91 2.41
5486 7094 7.271511 TGTTGCCACTGTTTTTGAATTTCTAT 58.728 30.769 0.00 0.00 0.00 1.98
5519 7127 6.377146 TGGTGTTTTGAAGATAAAGGGATAGC 59.623 38.462 0.00 0.00 0.00 2.97
5521 7129 7.559897 GGATGGTGTTTTGAAGATAAAGGGATA 59.440 37.037 0.00 0.00 0.00 2.59
5568 7176 7.013274 GCCATTGTCCTAGAAATAACATGCTAA 59.987 37.037 0.00 0.00 0.00 3.09
5569 7177 6.486657 GCCATTGTCCTAGAAATAACATGCTA 59.513 38.462 0.00 0.00 0.00 3.49
5570 7178 5.300286 GCCATTGTCCTAGAAATAACATGCT 59.700 40.000 0.00 0.00 0.00 3.79
5592 7203 6.919721 TGTTTAGAACTGGTAATGAAATGCC 58.080 36.000 0.00 0.00 0.00 4.40
5740 7352 2.077413 CACAAGTGGAGAGACTCTGC 57.923 55.000 16.54 16.54 35.21 4.26
5768 7386 1.147817 AGGCTGTTTCAAACCCAGGAT 59.852 47.619 0.00 0.00 0.00 3.24
5778 7396 0.473755 TCTGCAAGGAGGCTGTTTCA 59.526 50.000 0.00 0.00 34.71 2.69
5779 7397 1.609208 TTCTGCAAGGAGGCTGTTTC 58.391 50.000 0.00 0.00 34.71 2.78
5782 7400 3.659183 ATAATTCTGCAAGGAGGCTGT 57.341 42.857 0.00 0.00 34.71 4.40
5806 7424 9.274206 GAAATTTCTAGACAACCTTACTCTTGT 57.726 33.333 11.05 0.00 33.19 3.16
5811 7429 7.883833 GGAAGGAAATTTCTAGACAACCTTACT 59.116 37.037 17.42 0.00 36.76 2.24
5818 7436 5.312178 TCTGGGGAAGGAAATTTCTAGACAA 59.688 40.000 17.42 0.00 0.00 3.18
5831 7449 2.284405 GTCGGGTCTGGGGAAGGA 60.284 66.667 0.00 0.00 0.00 3.36
5846 7464 2.291741 CTGAAAGCTCCCACACAAAGTC 59.708 50.000 0.00 0.00 0.00 3.01
5914 7533 0.767998 TGGTGTTATGTGGGCTGTCA 59.232 50.000 0.00 0.00 0.00 3.58
5924 7543 6.817765 ACTGGATTGTTAAGTGGTGTTATG 57.182 37.500 0.00 0.00 0.00 1.90
5928 7547 5.512576 GGACTACTGGATTGTTAAGTGGTGT 60.513 44.000 0.00 0.00 35.99 4.16
5934 7553 4.832248 TGCTGGACTACTGGATTGTTAAG 58.168 43.478 0.00 0.00 0.00 1.85
5970 7597 5.715439 ATGAGAACCCCAATGATACTTCA 57.285 39.130 0.00 0.00 36.00 3.02
5971 7598 6.591935 TGTATGAGAACCCCAATGATACTTC 58.408 40.000 0.00 0.00 0.00 3.01
5981 7608 4.040047 AGATGTGATGTATGAGAACCCCA 58.960 43.478 0.00 0.00 0.00 4.96
5982 7609 4.346418 AGAGATGTGATGTATGAGAACCCC 59.654 45.833 0.00 0.00 0.00 4.95
6070 7699 6.183360 CGCACTTACACTCACAATTGCTTATA 60.183 38.462 5.05 0.00 30.57 0.98
6073 7702 3.303990 CGCACTTACACTCACAATTGCTT 60.304 43.478 5.05 0.00 30.57 3.91
6094 7723 1.875813 GCTCCACGACAGCTGATCG 60.876 63.158 26.39 26.39 45.17 3.69
6206 7844 0.606604 GGCGGAGTTCTGTCCAGTTA 59.393 55.000 0.00 0.00 36.23 2.24
6218 7856 2.982130 GATCACCAGTGGCGGAGT 59.018 61.111 9.78 0.00 0.00 3.85
6288 7945 2.216046 CAGACATGAGTGTTGCTGTGT 58.784 47.619 0.00 0.00 39.09 3.72
6292 7949 1.059098 TCCCAGACATGAGTGTTGCT 58.941 50.000 0.00 0.00 39.09 3.91
6391 8048 0.688487 TCCGGGGTAAGTTCAGGTTG 59.312 55.000 0.00 0.00 0.00 3.77
6394 8051 0.249398 CACTCCGGGGTAAGTTCAGG 59.751 60.000 6.68 0.00 0.00 3.86
6416 8076 7.390718 GGAAACCGCTTATTACTGGATCAATAT 59.609 37.037 0.00 0.00 0.00 1.28
6419 8079 4.879545 GGAAACCGCTTATTACTGGATCAA 59.120 41.667 0.00 0.00 0.00 2.57
6425 8086 4.094442 GTCCAAGGAAACCGCTTATTACTG 59.906 45.833 0.00 0.00 0.00 2.74
6437 8098 2.675423 GCCCCCGTCCAAGGAAAC 60.675 66.667 0.00 0.00 0.00 2.78
6438 8099 2.543797 ATGCCCCCGTCCAAGGAAA 61.544 57.895 0.00 0.00 0.00 3.13
6444 8105 2.148723 ATTGTTCATGCCCCCGTCCA 62.149 55.000 0.00 0.00 0.00 4.02
6445 8106 1.379843 ATTGTTCATGCCCCCGTCC 60.380 57.895 0.00 0.00 0.00 4.79
6455 8116 7.940688 TGTGATCTGCTTATATGGATTGTTCAT 59.059 33.333 0.00 0.00 0.00 2.57
6461 8122 7.859540 AGCTATGTGATCTGCTTATATGGATT 58.140 34.615 0.00 0.00 30.96 3.01
6472 8133 1.604185 GGACCGAGCTATGTGATCTGC 60.604 57.143 0.00 0.00 0.00 4.26
6478 8139 2.093306 TGTTTGGACCGAGCTATGTG 57.907 50.000 0.00 0.00 0.00 3.21
6486 8147 3.006940 GAGTATGCATTGTTTGGACCGA 58.993 45.455 3.54 0.00 0.00 4.69
6487 8148 2.223021 CGAGTATGCATTGTTTGGACCG 60.223 50.000 3.54 0.00 0.00 4.79
6497 8158 3.246226 GCTGTTCGATTCGAGTATGCATT 59.754 43.478 3.54 0.00 37.14 3.56
6523 8184 3.003897 GTGGTATTTGTTGGTCGCTGAAA 59.996 43.478 0.00 0.00 0.00 2.69
6527 8188 2.552315 CAAGTGGTATTTGTTGGTCGCT 59.448 45.455 0.00 0.00 0.00 4.93
6542 8203 2.227388 GCTGAAATGAGACACCAAGTGG 59.773 50.000 0.00 0.00 37.94 4.00
6545 8234 3.567164 AGTTGCTGAAATGAGACACCAAG 59.433 43.478 0.00 0.00 0.00 3.61
6572 8261 1.237285 ACAGGTTGTCGCTCAATGCC 61.237 55.000 0.00 0.00 38.38 4.40
6587 8276 2.660490 CGTTGTTTGTAATGCCACAGG 58.340 47.619 0.00 0.00 0.00 4.00
6623 8312 2.652642 GTCAGCTCGCGTATAAATCTCG 59.347 50.000 5.77 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.