Multiple sequence alignment - TraesCS5A01G296700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G296700 chr5A 100.000 5382 0 0 1 5382 504857566 504862947 0.000000e+00 9939.0
1 TraesCS5A01G296700 chr5A 85.839 918 89 20 2614 3501 81752550 81753456 0.000000e+00 937.0
2 TraesCS5A01G296700 chr5A 85.667 914 92 17 2620 3504 8489179 8488276 0.000000e+00 926.0
3 TraesCS5A01G296700 chr5A 82.803 157 25 2 510 666 708686993 708687147 7.270000e-29 139.0
4 TraesCS5A01G296700 chr5D 93.675 3083 115 30 2041 5077 399213317 399216365 0.000000e+00 4540.0
5 TraesCS5A01G296700 chr5D 88.125 960 67 24 387 1319 399211972 399212911 0.000000e+00 1098.0
6 TraesCS5A01G296700 chr5D 90.773 401 22 8 1383 1769 399212920 399213319 6.180000e-144 521.0
7 TraesCS5A01G296700 chr5D 95.484 310 10 3 5075 5382 399216446 399216753 4.840000e-135 492.0
8 TraesCS5A01G296700 chr5B 92.524 2167 84 30 3251 5382 479623244 479625367 0.000000e+00 3033.0
9 TraesCS5A01G296700 chr5B 93.654 1497 56 11 1790 3252 479621590 479623081 0.000000e+00 2202.0
10 TraesCS5A01G296700 chr5B 88.313 1446 80 28 387 1794 479620168 479621562 0.000000e+00 1652.0
11 TraesCS5A01G296700 chr5B 82.471 348 42 7 3 348 479619741 479620071 2.450000e-73 287.0
12 TraesCS5A01G296700 chr5B 97.917 48 1 0 1545 1592 214942900 214942947 3.450000e-12 84.2
13 TraesCS5A01G296700 chr3A 88.995 1254 106 19 3233 4476 680746082 680744851 0.000000e+00 1522.0
14 TraesCS5A01G296700 chr3A 84.828 145 14 7 910 1049 680746820 680746679 7.270000e-29 139.0
15 TraesCS5A01G296700 chr3A 92.727 55 2 2 1545 1598 470095734 470095787 1.610000e-10 78.7
16 TraesCS5A01G296700 chr1A 87.199 914 78 17 2620 3504 589575837 589574934 0.000000e+00 1003.0
17 TraesCS5A01G296700 chr4A 85.777 914 91 18 2620 3504 526045879 526044976 0.000000e+00 931.0
18 TraesCS5A01G296700 chr4A 82.873 181 25 4 513 688 685735612 685735433 2.010000e-34 158.0
19 TraesCS5A01G296700 chr4A 81.667 180 26 5 517 690 176808842 176808664 5.620000e-30 143.0
20 TraesCS5A01G296700 chr4A 92.308 39 2 1 383 421 627740344 627740307 3.000000e-03 54.7
21 TraesCS5A01G296700 chr3B 85.730 911 93 18 2620 3504 802680431 802679532 0.000000e+00 928.0
22 TraesCS5A01G296700 chr3B 85.460 619 70 12 3863 4476 719436182 719435579 1.270000e-175 627.0
23 TraesCS5A01G296700 chr3B 92.537 268 18 2 3600 3867 719443026 719442761 3.040000e-102 383.0
24 TraesCS5A01G296700 chr3B 81.390 403 58 11 1082 1477 719444347 719443955 4.050000e-81 313.0
25 TraesCS5A01G296700 chr3B 83.333 162 17 9 908 1069 719444553 719444402 2.020000e-29 141.0
26 TraesCS5A01G296700 chr3B 83.117 154 24 2 497 650 541529724 541529875 7.270000e-29 139.0
27 TraesCS5A01G296700 chr2B 85.321 872 91 16 2614 3458 53601112 53601973 0.000000e+00 867.0
28 TraesCS5A01G296700 chr2B 77.137 503 67 21 2001 2470 341066603 341066116 1.160000e-61 248.0
29 TraesCS5A01G296700 chr2B 92.593 54 4 0 1545 1598 87922741 87922794 1.610000e-10 78.7
30 TraesCS5A01G296700 chr7A 84.245 914 98 20 2614 3501 71387993 71388886 0.000000e+00 848.0
31 TraesCS5A01G296700 chr7A 89.831 59 5 1 1545 1603 330430255 330430312 2.080000e-09 75.0
32 TraesCS5A01G296700 chr6A 85.190 709 71 18 2819 3504 437541810 437541113 0.000000e+00 697.0
33 TraesCS5A01G296700 chr6A 86.853 251 23 3 5136 5376 31757573 31757323 6.870000e-69 272.0
34 TraesCS5A01G296700 chr6A 90.769 65 6 0 1525 1589 256473625 256473689 2.670000e-13 87.9
35 TraesCS5A01G296700 chr6A 100.000 28 0 0 272 299 560727331 560727358 1.000000e-02 52.8
36 TraesCS5A01G296700 chr1B 79.699 665 101 18 1927 2562 33988717 33989376 2.960000e-122 449.0
37 TraesCS5A01G296700 chr1B 81.765 170 23 7 508 672 422983879 422984045 9.400000e-28 135.0
38 TraesCS5A01G296700 chr6B 78.411 579 78 20 2017 2562 369660947 369661511 3.110000e-87 333.0
39 TraesCS5A01G296700 chr6B 81.250 192 32 3 513 700 624618046 624617855 9.340000e-33 152.0
40 TraesCS5A01G296700 chr7B 78.141 581 81 20 2017 2565 259609728 259609162 1.450000e-85 327.0
41 TraesCS5A01G296700 chr7B 76.480 659 94 31 1943 2562 400832833 400833469 8.760000e-78 302.0
42 TraesCS5A01G296700 chr7B 80.750 400 55 14 2176 2565 305431292 305430905 5.270000e-75 292.0
43 TraesCS5A01G296700 chr7B 80.500 400 56 12 2176 2565 195422202 195421815 2.450000e-73 287.0
44 TraesCS5A01G296700 chr3D 92.727 220 16 0 3600 3819 543869832 543869613 8.700000e-83 318.0
45 TraesCS5A01G296700 chr3D 85.235 149 16 5 916 1060 543871164 543871018 1.210000e-31 148.0
46 TraesCS5A01G296700 chrUn 78.744 207 38 3 500 701 18921737 18921532 3.380000e-27 134.0
47 TraesCS5A01G296700 chrUn 97.917 48 1 0 1545 1592 115400292 115400245 3.450000e-12 84.2
48 TraesCS5A01G296700 chr1D 77.540 187 32 7 508 688 270054235 270054417 2.650000e-18 104.0
49 TraesCS5A01G296700 chr6D 89.231 65 7 0 1525 1589 166775137 166775073 1.240000e-11 82.4
50 TraesCS5A01G296700 chr7D 82.759 87 13 2 238 324 65009676 65009592 5.780000e-10 76.8
51 TraesCS5A01G296700 chr2A 87.931 58 7 0 247 304 51386839 51386782 9.670000e-08 69.4
52 TraesCS5A01G296700 chr2D 85.075 67 6 3 382 444 646797431 646797497 1.250000e-06 65.8
53 TraesCS5A01G296700 chr2D 85.484 62 7 2 373 432 646881193 646881254 4.500000e-06 63.9
54 TraesCS5A01G296700 chr2D 92.105 38 3 0 262 299 33725716 33725679 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G296700 chr5A 504857566 504862947 5381 False 9939.00 9939 100.000000 1 5382 1 chr5A.!!$F2 5381
1 TraesCS5A01G296700 chr5A 81752550 81753456 906 False 937.00 937 85.839000 2614 3501 1 chr5A.!!$F1 887
2 TraesCS5A01G296700 chr5A 8488276 8489179 903 True 926.00 926 85.667000 2620 3504 1 chr5A.!!$R1 884
3 TraesCS5A01G296700 chr5D 399211972 399216753 4781 False 1662.75 4540 92.014250 387 5382 4 chr5D.!!$F1 4995
4 TraesCS5A01G296700 chr5B 479619741 479625367 5626 False 1793.50 3033 89.240500 3 5382 4 chr5B.!!$F2 5379
5 TraesCS5A01G296700 chr3A 680744851 680746820 1969 True 830.50 1522 86.911500 910 4476 2 chr3A.!!$R1 3566
6 TraesCS5A01G296700 chr1A 589574934 589575837 903 True 1003.00 1003 87.199000 2620 3504 1 chr1A.!!$R1 884
7 TraesCS5A01G296700 chr4A 526044976 526045879 903 True 931.00 931 85.777000 2620 3504 1 chr4A.!!$R2 884
8 TraesCS5A01G296700 chr3B 802679532 802680431 899 True 928.00 928 85.730000 2620 3504 1 chr3B.!!$R2 884
9 TraesCS5A01G296700 chr3B 719435579 719436182 603 True 627.00 627 85.460000 3863 4476 1 chr3B.!!$R1 613
10 TraesCS5A01G296700 chr3B 719442761 719444553 1792 True 279.00 383 85.753333 908 3867 3 chr3B.!!$R3 2959
11 TraesCS5A01G296700 chr2B 53601112 53601973 861 False 867.00 867 85.321000 2614 3458 1 chr2B.!!$F1 844
12 TraesCS5A01G296700 chr7A 71387993 71388886 893 False 848.00 848 84.245000 2614 3501 1 chr7A.!!$F1 887
13 TraesCS5A01G296700 chr6A 437541113 437541810 697 True 697.00 697 85.190000 2819 3504 1 chr6A.!!$R2 685
14 TraesCS5A01G296700 chr1B 33988717 33989376 659 False 449.00 449 79.699000 1927 2562 1 chr1B.!!$F1 635
15 TraesCS5A01G296700 chr6B 369660947 369661511 564 False 333.00 333 78.411000 2017 2562 1 chr6B.!!$F1 545
16 TraesCS5A01G296700 chr7B 259609162 259609728 566 True 327.00 327 78.141000 2017 2565 1 chr7B.!!$R2 548
17 TraesCS5A01G296700 chr7B 400832833 400833469 636 False 302.00 302 76.480000 1943 2562 1 chr7B.!!$F1 619
18 TraesCS5A01G296700 chr3D 543869613 543871164 1551 True 233.00 318 88.981000 916 3819 2 chr3D.!!$R1 2903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 312 1.077357 ACCGTGCCACTTGGAAACA 60.077 52.632 0.00 0.00 37.39 2.83 F
1319 1469 0.656259 GAGTTTAGCCGCCGGAATTC 59.344 55.000 7.68 0.00 0.00 2.17 F
2014 2230 0.179156 GAATGACATGTGCCGGCAAG 60.179 55.000 34.66 25.71 0.00 4.01 F
2592 2820 0.248866 GTGGGTGGCAAAAACTGACG 60.249 55.000 0.00 0.00 34.74 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2202 0.036732 ACATGTCATTCCTGGTGCGT 59.963 50.0 0.00 0.0 0.00 5.24 R
3156 3596 0.461870 TGGTGTGTGTCTGTGTCAGC 60.462 55.0 0.00 0.0 0.00 4.26 R
3159 3599 2.545526 CTGATTGGTGTGTGTCTGTGTC 59.454 50.0 0.00 0.0 0.00 3.67 R
4557 5383 0.865769 CAAAGTTGTCGGAACCGGAG 59.134 55.0 9.46 0.0 40.25 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.315781 GACAGATCTCGCCATGGCCA 62.316 60.000 30.79 18.42 37.98 5.36
30 31 2.592861 GATCTCGCCATGGCCACC 60.593 66.667 30.79 11.85 37.98 4.61
32 33 2.687418 GATCTCGCCATGGCCACCAT 62.687 60.000 30.79 16.98 46.37 3.55
33 34 2.687418 ATCTCGCCATGGCCACCATC 62.687 60.000 30.79 1.84 43.15 3.51
54 55 2.667418 GCTCTCTGCTCCTTGCCA 59.333 61.111 0.00 0.00 42.00 4.92
60 61 3.535629 CTGCTCCTTGCCACCGTGA 62.536 63.158 0.00 0.00 42.00 4.35
80 81 2.003548 GGCCTTCCCTCCTGGATGT 61.004 63.158 0.00 0.00 44.66 3.06
86 87 2.801631 CCCTCCTGGATGTCGCCTC 61.802 68.421 0.00 0.00 35.39 4.70
156 157 4.773117 GACGCCGACGACCCTGAC 62.773 72.222 0.00 0.00 43.93 3.51
188 189 1.481056 CCACGGAACCTCACCCTCTT 61.481 60.000 0.00 0.00 0.00 2.85
199 200 4.778143 CCCTCTTCCGCCCCAACG 62.778 72.222 0.00 0.00 0.00 4.10
224 225 3.186047 GCGGTTCCACCATCGACG 61.186 66.667 0.00 0.00 38.47 5.12
226 227 3.186047 GGTTCCACCATCGACGCG 61.186 66.667 3.53 3.53 38.42 6.01
297 299 2.430921 GTGAGAGGCACGACCGTG 60.431 66.667 17.19 17.19 46.52 4.94
305 307 3.345808 CACGACCGTGCCACTTGG 61.346 66.667 9.69 0.00 39.39 3.61
306 308 3.542676 ACGACCGTGCCACTTGGA 61.543 61.111 0.00 0.00 37.39 3.53
307 309 2.280524 CGACCGTGCCACTTGGAA 60.281 61.111 0.00 0.00 37.39 3.53
308 310 1.890041 CGACCGTGCCACTTGGAAA 60.890 57.895 0.00 0.00 37.39 3.13
309 311 1.652563 GACCGTGCCACTTGGAAAC 59.347 57.895 0.00 0.00 37.39 2.78
310 312 1.077357 ACCGTGCCACTTGGAAACA 60.077 52.632 0.00 0.00 37.39 2.83
408 470 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
409 471 1.517257 CTTTCGCGAGAGGCACGAT 60.517 57.895 18.35 0.00 43.84 3.73
411 473 2.207788 TTTCGCGAGAGGCACGATCA 62.208 55.000 9.59 0.00 43.84 2.92
473 535 3.369381 CGTGCCTCTCGGAAATGAT 57.631 52.632 0.00 0.00 0.00 2.45
497 575 4.955925 TTTTTCTTTCGTGAGAGCAACA 57.044 36.364 0.00 0.00 43.69 3.33
505 583 3.006940 TCGTGAGAGCAACAGTTTGTTT 58.993 40.909 0.00 0.00 35.21 2.83
515 593 2.971307 ACAGTTTGTTTGCCTGGTTTG 58.029 42.857 0.00 0.00 0.00 2.93
520 598 4.824537 AGTTTGTTTGCCTGGTTTGTTTTT 59.175 33.333 0.00 0.00 0.00 1.94
523 601 3.999663 TGTTTGCCTGGTTTGTTTTTGAG 59.000 39.130 0.00 0.00 0.00 3.02
601 679 5.048154 TGCAAAGAATCCAACGATGAAATCA 60.048 36.000 0.00 0.00 45.97 2.57
617 695 5.352284 TGAAATCAGCTCGAGATTTAGACC 58.648 41.667 18.75 2.84 43.60 3.85
693 772 3.120820 TCGTATTGCGACAAATGACACAC 60.121 43.478 0.00 0.00 45.68 3.82
701 780 2.542178 GACAAATGACACACGTGCAGTA 59.458 45.455 17.22 0.00 0.00 2.74
717 796 2.841442 AGTACGGCTGAGAAGCTTTT 57.159 45.000 0.00 0.00 34.73 2.27
718 797 3.127425 AGTACGGCTGAGAAGCTTTTT 57.873 42.857 0.00 0.00 34.73 1.94
775 856 1.227118 AAACGGGCTGGTTTTTGCG 60.227 52.632 0.00 0.00 36.78 4.85
1285 1433 1.067212 ACCCGTCTCACGCTATGATTC 59.933 52.381 0.00 0.00 40.91 2.52
1298 1448 4.259174 CGCTATGATTCTGATGATTACGCG 60.259 45.833 3.53 3.53 0.00 6.01
1319 1469 0.656259 GAGTTTAGCCGCCGGAATTC 59.344 55.000 7.68 0.00 0.00 2.17
1352 1507 2.952310 GGGATGTGATTCTGGTTAAGCC 59.048 50.000 1.51 0.00 37.90 4.35
1353 1508 2.614057 GGATGTGATTCTGGTTAAGCCG 59.386 50.000 1.51 0.00 41.21 5.52
1445 1601 8.695456 CCTAAACATGGGCATTTAGTTAATCTT 58.305 33.333 10.81 0.00 36.89 2.40
1481 1637 1.747355 CCTGCAAACATGGAAGCCTAG 59.253 52.381 0.00 0.00 0.00 3.02
1578 1735 6.811253 AAACTGCGACACTTATTTTGGATA 57.189 33.333 0.00 0.00 0.00 2.59
1615 1772 8.373048 TGATTAAACAACACCAGTAGTTAGTG 57.627 34.615 0.00 0.00 37.53 2.74
1677 1834 5.535333 CACAATATCAATCCAATGAAGCCC 58.465 41.667 0.00 0.00 32.06 5.19
1722 1890 3.565307 AGCCCTGTTGATTGAGAAAACA 58.435 40.909 0.00 0.00 33.06 2.83
1808 2008 3.250762 TGAGACCAAACATTCTTTCTGCG 59.749 43.478 0.00 0.00 0.00 5.18
1809 2009 2.554032 AGACCAAACATTCTTTCTGCGG 59.446 45.455 0.00 0.00 0.00 5.69
1817 2017 1.172180 TTCTTTCTGCGGCCAAGTGG 61.172 55.000 2.24 0.00 38.53 4.00
1839 2039 3.197983 GCTCCCTAAGGTCTTTCAGCTAA 59.802 47.826 0.00 0.00 30.39 3.09
1840 2040 4.141597 GCTCCCTAAGGTCTTTCAGCTAAT 60.142 45.833 0.00 0.00 30.39 1.73
1893 2107 1.801332 CAGCTGCTTGCACTGATCC 59.199 57.895 0.00 0.00 45.94 3.36
1904 2118 4.199002 TGCACTGATCCCTTATCCTAGA 57.801 45.455 0.00 0.00 33.22 2.43
1922 2136 5.928264 TCCTAGATATTGCATGAATGTCACG 59.072 40.000 0.00 0.00 35.22 4.35
1946 2160 6.166982 GTTTAGTCAAACAGATAGCCACTCT 58.833 40.000 0.00 0.00 43.02 3.24
1981 2197 9.553064 TTGAATTCTTGAGAATCTATAGGAAGC 57.447 33.333 7.05 0.00 43.41 3.86
1985 2201 2.229062 TGAGAATCTATAGGAAGCGCCG 59.771 50.000 2.29 0.00 37.71 6.46
1986 2202 2.488545 GAGAATCTATAGGAAGCGCCGA 59.511 50.000 2.29 0.00 43.43 5.54
2014 2230 0.179156 GAATGACATGTGCCGGCAAG 60.179 55.000 34.66 25.71 0.00 4.01
2015 2231 2.216750 AATGACATGTGCCGGCAAGC 62.217 55.000 34.66 21.26 0.00 4.01
2102 2319 2.555325 TGCTGCTTCCTGTCTGAAAATG 59.445 45.455 0.00 0.00 0.00 2.32
2246 2464 6.484643 CCACCTATTCCAACTGAGACAATATG 59.515 42.308 0.00 0.00 0.00 1.78
2368 2586 7.494922 AAATTTACCCATGAGCCACTTTTAT 57.505 32.000 0.00 0.00 0.00 1.40
2480 2701 3.181439 GGAGCCCTTAGAGCCACATAATT 60.181 47.826 0.00 0.00 0.00 1.40
2493 2714 6.058183 AGCCACATAATTACTGATCTGTTCC 58.942 40.000 10.76 0.00 0.00 3.62
2592 2820 0.248866 GTGGGTGGCAAAAACTGACG 60.249 55.000 0.00 0.00 34.74 4.35
2618 2846 3.779759 TGTTCAATTTTCTGTGTGGTGC 58.220 40.909 0.00 0.00 0.00 5.01
2640 2868 2.239400 GGTTAGGAAAAACCAGCTGCT 58.761 47.619 8.66 0.00 46.85 4.24
3119 3531 9.042450 TCTCACTAACTGATGTTTTCCCTTATA 57.958 33.333 0.00 0.00 37.59 0.98
3120 3532 9.099454 CTCACTAACTGATGTTTTCCCTTATAC 57.901 37.037 0.00 0.00 37.59 1.47
3121 3533 8.822805 TCACTAACTGATGTTTTCCCTTATACT 58.177 33.333 0.00 0.00 37.59 2.12
3122 3534 8.883731 CACTAACTGATGTTTTCCCTTATACTG 58.116 37.037 0.00 0.00 37.59 2.74
3123 3535 8.603304 ACTAACTGATGTTTTCCCTTATACTGT 58.397 33.333 0.00 0.00 37.59 3.55
3137 3552 6.990349 CCCTTATACTGTATGTGTTAAGGTGG 59.010 42.308 18.29 6.77 40.48 4.61
3156 3596 4.523813 GTGGTAATGTTTGACTGTTCACG 58.476 43.478 0.00 0.00 0.00 4.35
3159 3599 3.338818 AATGTTTGACTGTTCACGCTG 57.661 42.857 0.00 0.00 0.00 5.18
3165 3609 0.855349 GACTGTTCACGCTGACACAG 59.145 55.000 17.60 17.60 39.32 3.66
3208 3809 7.586747 ACCATCAAAATTTGTGCATTGAATTC 58.413 30.769 5.56 0.00 35.62 2.17
3285 4050 9.645128 ATGACATCAAATTTATCCATCCTTACA 57.355 29.630 0.00 0.00 0.00 2.41
3286 4051 9.473007 TGACATCAAATTTATCCATCCTTACAA 57.527 29.630 0.00 0.00 0.00 2.41
3314 4079 9.651718 GCTGTTTTCTGTACATAATATAGTTGC 57.348 33.333 0.00 0.00 0.00 4.17
3349 4114 6.844696 GAAATCGATATTTCCAGTGCAGTA 57.155 37.500 0.00 0.00 43.49 2.74
3352 4117 4.883083 TCGATATTTCCAGTGCAGTATCC 58.117 43.478 0.00 0.00 0.00 2.59
3509 4280 6.957920 TGCTTAAATGCTGCCATATTCTAA 57.042 33.333 0.00 0.00 0.00 2.10
3510 4281 6.973843 TGCTTAAATGCTGCCATATTCTAAG 58.026 36.000 0.00 3.84 0.00 2.18
3513 4284 7.922811 GCTTAAATGCTGCCATATTCTAAGTTT 59.077 33.333 0.00 0.00 0.00 2.66
3548 4320 9.261180 ACTATTCCTGTTAATGACGTGAATATG 57.739 33.333 0.00 0.00 35.05 1.78
3572 4344 7.782049 TGGGTCACTCTGTTTTATATCAGTAG 58.218 38.462 0.00 0.00 33.89 2.57
3573 4345 7.399191 TGGGTCACTCTGTTTTATATCAGTAGT 59.601 37.037 0.00 0.00 33.89 2.73
3574 4346 8.910944 GGGTCACTCTGTTTTATATCAGTAGTA 58.089 37.037 0.00 0.00 33.89 1.82
3633 4436 5.478233 TTTGTTGTGTCTGATGTGTGTAC 57.522 39.130 0.00 0.00 0.00 2.90
4137 4944 0.460284 CCCGTCAGCCACATGAGTAC 60.460 60.000 0.00 0.00 0.00 2.73
4196 5007 6.482973 TGCCCTTTTAAGATCTTTTGCTTTTG 59.517 34.615 14.36 0.00 0.00 2.44
4400 5214 6.457934 GCATTAGTTCAGACCTGACAATGATG 60.458 42.308 20.70 14.59 39.66 3.07
4429 5244 4.358851 TGAAATTTTGCCGTGTTCTCAAG 58.641 39.130 0.00 0.00 0.00 3.02
4530 5356 0.371645 CTTGAGACGATTGCCGCTTC 59.628 55.000 0.00 0.00 43.32 3.86
4557 5383 1.002033 CTCAGCTGTTTGCCTGTGTTC 60.002 52.381 14.67 0.00 44.23 3.18
4570 5396 1.364901 GTGTTCTCCGGTTCCGACA 59.635 57.895 13.08 6.14 0.00 4.35
4571 5397 0.249573 GTGTTCTCCGGTTCCGACAA 60.250 55.000 13.08 0.00 0.00 3.18
4581 5407 2.095919 CGGTTCCGACAACTTTGAATCC 60.096 50.000 5.19 0.00 0.00 3.01
4594 5424 6.817765 ACTTTGAATCCGTTGTGTATGAAT 57.182 33.333 0.00 0.00 0.00 2.57
4618 5448 5.659463 AGATGTTCTGTTGAGTATGAGAGC 58.341 41.667 0.00 0.00 0.00 4.09
4639 5469 3.484886 GCATGATCAGAGAACTGCGAAAC 60.485 47.826 0.09 0.00 43.17 2.78
4654 5484 1.724582 GAAACTGCACGGTGGTTGCT 61.725 55.000 10.60 0.00 0.00 3.91
4699 5529 7.280205 CACGTAAAATTAGTCTGGCCTTAATCT 59.720 37.037 3.32 0.00 0.00 2.40
4768 5608 6.485313 TGGAAAAATAAACATGTCGACACTCT 59.515 34.615 22.71 1.47 0.00 3.24
4769 5609 7.015877 GGAAAAATAAACATGTCGACACTCTC 58.984 38.462 22.71 5.80 0.00 3.20
4794 5634 9.667107 TCTATAGCAGTACAAAATTTAAGCAGT 57.333 29.630 0.00 0.00 0.00 4.40
4800 5640 9.834628 GCAGTACAAAATTTAAGCAGTACAATA 57.165 29.630 14.55 0.00 35.51 1.90
4806 5646 6.431198 AATTTAAGCAGTACAATACCCACG 57.569 37.500 0.00 0.00 0.00 4.94
4843 5683 7.045416 TCCACATAACACATACTCCATTACAC 58.955 38.462 0.00 0.00 0.00 2.90
4852 5692 1.086696 CTCCATTACACGCAACCTGG 58.913 55.000 0.00 0.00 0.00 4.45
4853 5693 0.398696 TCCATTACACGCAACCTGGT 59.601 50.000 0.00 0.00 0.00 4.00
4854 5694 0.802494 CCATTACACGCAACCTGGTC 59.198 55.000 0.00 0.00 0.00 4.02
4855 5695 0.442310 CATTACACGCAACCTGGTCG 59.558 55.000 0.00 2.65 0.00 4.79
4856 5696 0.672401 ATTACACGCAACCTGGTCGG 60.672 55.000 11.90 3.81 39.35 4.79
4897 5737 5.089970 TGAGCAGCACATACTCAATTACT 57.910 39.130 0.00 0.00 37.49 2.24
4898 5738 5.111989 TGAGCAGCACATACTCAATTACTC 58.888 41.667 0.00 0.00 37.49 2.59
4899 5739 4.446371 AGCAGCACATACTCAATTACTCC 58.554 43.478 0.00 0.00 0.00 3.85
4900 5740 4.163078 AGCAGCACATACTCAATTACTCCT 59.837 41.667 0.00 0.00 0.00 3.69
4901 5741 5.363868 AGCAGCACATACTCAATTACTCCTA 59.636 40.000 0.00 0.00 0.00 2.94
4902 5742 5.463724 GCAGCACATACTCAATTACTCCTAC 59.536 44.000 0.00 0.00 0.00 3.18
4906 5746 8.580720 AGCACATACTCAATTACTCCTACATAG 58.419 37.037 0.00 0.00 0.00 2.23
4957 5798 3.157087 TCAATCTGGCCCTTTCTTCAAC 58.843 45.455 0.00 0.00 0.00 3.18
4964 5805 1.603931 GCCCTTTCTTCAACAAGCAGC 60.604 52.381 0.00 0.00 0.00 5.25
4965 5806 1.000171 CCCTTTCTTCAACAAGCAGCC 60.000 52.381 0.00 0.00 0.00 4.85
5181 6106 3.136123 CCAAGGGACATGCTGCCG 61.136 66.667 0.00 0.00 34.82 5.69
5263 6188 0.749091 TGATCGCCCTTTCCAGCATG 60.749 55.000 0.00 0.00 0.00 4.06
5320 6245 2.693762 CGGTGGCAAGGCATGAGTG 61.694 63.158 0.00 0.00 0.00 3.51
5342 6267 0.394216 TGGTGATGTGGCATGCTACC 60.394 55.000 28.65 19.96 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.433879 CGAGATCTGTCGTGGGGAC 59.566 63.158 0.00 0.00 46.27 4.46
8 9 1.953138 GCCATGGCGAGATCTGTCG 60.953 63.158 23.48 0.00 43.08 4.35
10 11 2.369633 TGGCCATGGCGAGATCTGT 61.370 57.895 29.90 0.00 43.06 3.41
11 12 1.890979 GTGGCCATGGCGAGATCTG 60.891 63.158 29.90 0.00 43.06 2.90
28 29 3.215245 GCAGAGAGCTCCGATGGT 58.785 61.111 10.93 0.00 41.15 3.55
76 77 0.460987 CCCAACTCAGAGGCGACATC 60.461 60.000 1.53 0.00 0.00 3.06
78 79 2.583441 CCCCAACTCAGAGGCGACA 61.583 63.158 1.53 0.00 0.00 4.35
80 81 3.003173 CCCCCAACTCAGAGGCGA 61.003 66.667 1.53 0.00 0.00 5.54
116 117 4.083862 GGTCCTTCGGCTCCGCTT 62.084 66.667 2.96 0.00 39.59 4.68
153 154 1.074090 TGGACTGTTCCTGGGGTCA 60.074 57.895 0.00 0.00 43.31 4.02
154 155 1.375326 GTGGACTGTTCCTGGGGTC 59.625 63.158 0.00 0.00 43.31 4.46
155 156 2.516888 CGTGGACTGTTCCTGGGGT 61.517 63.158 0.00 0.00 43.31 4.95
156 157 2.347490 CGTGGACTGTTCCTGGGG 59.653 66.667 0.00 0.00 43.31 4.96
157 158 1.764571 TTCCGTGGACTGTTCCTGGG 61.765 60.000 0.00 0.19 43.31 4.45
158 159 0.602905 GTTCCGTGGACTGTTCCTGG 60.603 60.000 0.00 0.00 43.31 4.45
159 160 0.602905 GGTTCCGTGGACTGTTCCTG 60.603 60.000 0.00 0.00 43.31 3.86
163 164 0.106149 GTGAGGTTCCGTGGACTGTT 59.894 55.000 0.00 0.00 0.00 3.16
166 167 2.214920 GGGTGAGGTTCCGTGGACT 61.215 63.158 0.00 0.00 0.00 3.85
169 170 1.481056 AAGAGGGTGAGGTTCCGTGG 61.481 60.000 0.00 0.00 0.00 4.94
176 177 3.003763 GGCGGAAGAGGGTGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
257 259 2.325583 AGCAAAACCGTGTCTCTTGA 57.674 45.000 0.00 0.00 0.00 3.02
259 261 2.614057 CAGAAGCAAAACCGTGTCTCTT 59.386 45.455 0.00 0.00 0.00 2.85
264 266 1.670811 CTCACAGAAGCAAAACCGTGT 59.329 47.619 0.00 0.00 0.00 4.49
268 270 1.268079 GCCTCTCACAGAAGCAAAACC 59.732 52.381 0.00 0.00 32.10 3.27
269 271 1.949525 TGCCTCTCACAGAAGCAAAAC 59.050 47.619 0.00 0.00 38.61 2.43
291 293 1.098712 TGTTTCCAAGTGGCACGGTC 61.099 55.000 12.71 4.96 34.44 4.79
292 294 0.681564 TTGTTTCCAAGTGGCACGGT 60.682 50.000 12.71 0.95 34.44 4.83
293 295 0.457851 TTTGTTTCCAAGTGGCACGG 59.542 50.000 12.71 8.67 34.44 4.94
294 296 2.285827 TTTTGTTTCCAAGTGGCACG 57.714 45.000 12.71 0.00 34.44 5.34
348 350 2.427600 GAGAAAATCGTGCTTCTCGC 57.572 50.000 7.16 0.00 38.53 5.03
377 439 4.425520 TCGCGAAAGGAAAAACATGTTTT 58.574 34.783 27.01 27.01 43.88 2.43
378 440 4.035278 TCGCGAAAGGAAAAACATGTTT 57.965 36.364 18.13 18.13 0.00 2.83
379 441 3.314080 TCTCGCGAAAGGAAAAACATGTT 59.686 39.130 11.33 4.92 0.00 2.71
380 442 2.875933 TCTCGCGAAAGGAAAAACATGT 59.124 40.909 11.33 0.00 0.00 3.21
382 444 2.484264 CCTCTCGCGAAAGGAAAAACAT 59.516 45.455 24.42 0.00 34.35 2.71
383 445 1.871039 CCTCTCGCGAAAGGAAAAACA 59.129 47.619 24.42 0.00 34.35 2.83
384 446 1.399855 GCCTCTCGCGAAAGGAAAAAC 60.400 52.381 32.19 10.01 34.35 2.43
385 447 0.872388 GCCTCTCGCGAAAGGAAAAA 59.128 50.000 32.19 0.00 34.35 1.94
488 566 2.099756 AGGCAAACAAACTGTTGCTCTC 59.900 45.455 8.15 0.00 40.14 3.20
493 571 2.671130 ACCAGGCAAACAAACTGTTG 57.329 45.000 0.00 0.00 40.14 3.33
494 572 3.244387 ACAAACCAGGCAAACAAACTGTT 60.244 39.130 0.00 0.00 43.41 3.16
497 575 3.694043 AACAAACCAGGCAAACAAACT 57.306 38.095 0.00 0.00 0.00 2.66
505 583 4.543590 TTTCTCAAAAACAAACCAGGCA 57.456 36.364 0.00 0.00 0.00 4.75
530 608 8.428063 TCCCATGTTGATAAGTTTTGACAAAAT 58.572 29.630 16.03 4.51 32.22 1.82
534 612 6.947733 AGATCCCATGTTGATAAGTTTTGACA 59.052 34.615 0.00 0.00 0.00 3.58
582 660 4.521146 AGCTGATTTCATCGTTGGATTCT 58.479 39.130 0.00 0.00 0.00 2.40
601 679 2.366916 CCATGGGTCTAAATCTCGAGCT 59.633 50.000 7.81 0.00 0.00 4.09
673 751 3.152983 CGTGTGTCATTTGTCGCAATAC 58.847 45.455 0.00 0.00 0.00 1.89
674 752 2.803386 ACGTGTGTCATTTGTCGCAATA 59.197 40.909 0.00 0.00 0.00 1.90
717 796 0.103937 CCAGCCGGTGCAAAGAAAAA 59.896 50.000 1.90 0.00 41.13 1.94
718 797 1.739049 CCAGCCGGTGCAAAGAAAA 59.261 52.632 1.90 0.00 41.13 2.29
719 798 2.199652 CCCAGCCGGTGCAAAGAAA 61.200 57.895 1.90 0.00 41.13 2.52
720 799 2.597217 CCCAGCCGGTGCAAAGAA 60.597 61.111 1.90 0.00 41.13 2.52
748 829 1.966451 CAGCCCGTTTGGTGTCCTC 60.966 63.158 0.00 0.00 36.04 3.71
1265 1413 1.067212 GAATCATAGCGTGAGACGGGT 59.933 52.381 0.00 0.00 42.82 5.28
1285 1433 1.200483 AACTCGCGCGTAATCATCAG 58.800 50.000 30.98 19.05 0.00 2.90
1319 1469 0.178068 CACATCCCCTAGTTGTCCCG 59.822 60.000 0.00 0.00 0.00 5.14
1325 1475 3.464828 ACCAGAATCACATCCCCTAGTT 58.535 45.455 0.00 0.00 0.00 2.24
1327 1477 5.615289 CTTAACCAGAATCACATCCCCTAG 58.385 45.833 0.00 0.00 0.00 3.02
1328 1478 4.141482 GCTTAACCAGAATCACATCCCCTA 60.141 45.833 0.00 0.00 0.00 3.53
1445 1601 1.250328 CAGGCTGATGTTTGGAAGCA 58.750 50.000 9.42 0.00 37.40 3.91
1481 1637 3.133003 TGCTCATTCTTCCTGCCTACTAC 59.867 47.826 0.00 0.00 0.00 2.73
1498 1654 0.106268 TTTTCCAGCCCTGTTGCTCA 60.106 50.000 0.00 0.00 40.32 4.26
1578 1735 5.546499 TGTTGTTTAATCAGTACTCCCTCCT 59.454 40.000 0.00 0.00 0.00 3.69
1615 1772 4.216411 TGGGAACTATGGCAAGTTAGAC 57.784 45.455 12.77 8.36 39.78 2.59
1687 1855 2.309755 ACAGGGCTTGATTGATTGGAGA 59.690 45.455 2.65 0.00 0.00 3.71
1722 1890 3.454082 CTGTTGCTCCCTTCTATTCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
1782 1950 6.376978 CAGAAAGAATGTTTGGTCTCACATC 58.623 40.000 0.00 0.00 32.21 3.06
1817 2017 1.557371 AGCTGAAAGACCTTAGGGAGC 59.443 52.381 2.32 0.00 34.07 4.70
1839 2039 9.686683 GCATGTATTGTTCCCTATCCTTTATAT 57.313 33.333 0.00 0.00 0.00 0.86
1840 2040 8.664992 TGCATGTATTGTTCCCTATCCTTTATA 58.335 33.333 0.00 0.00 0.00 0.98
1893 2107 9.107177 GACATTCATGCAATATCTAGGATAAGG 57.893 37.037 0.00 0.00 0.00 2.69
1904 2118 7.065683 TGACTAAACGTGACATTCATGCAATAT 59.934 33.333 0.00 0.00 36.89 1.28
1922 2136 6.166982 AGAGTGGCTATCTGTTTGACTAAAC 58.833 40.000 0.00 0.00 45.04 2.01
1985 2201 0.729116 CATGTCATTCCTGGTGCGTC 59.271 55.000 0.00 0.00 0.00 5.19
1986 2202 0.036732 ACATGTCATTCCTGGTGCGT 59.963 50.000 0.00 0.00 0.00 5.24
1996 2212 1.885157 CTTGCCGGCACATGTCATT 59.115 52.632 32.95 0.00 0.00 2.57
2014 2230 1.408422 GGCATGTTTCTGTGTTTCGC 58.592 50.000 0.00 0.00 0.00 4.70
2015 2231 1.335872 GGGGCATGTTTCTGTGTTTCG 60.336 52.381 0.00 0.00 0.00 3.46
2102 2319 7.099764 TCTCATCTGACCTGAAAATGTTACTC 58.900 38.462 0.00 0.00 0.00 2.59
2179 2397 2.113807 TGTGCATACAGCTCTCCAGAT 58.886 47.619 0.00 0.00 45.94 2.90
2246 2464 2.229302 TGGGGCAACAAAACGCTAATAC 59.771 45.455 0.00 0.00 39.74 1.89
2480 2701 7.399191 ACAAATAGTACAGGGAACAGATCAGTA 59.601 37.037 0.00 0.00 0.00 2.74
2493 2714 5.237815 TGCTTGTCAGACAAATAGTACAGG 58.762 41.667 16.85 3.59 37.69 4.00
2541 2762 6.944862 GCTAACATTAGGAATGGATGGAAGAT 59.055 38.462 4.35 0.00 43.21 2.40
2592 2820 6.418819 CACCACACAGAAAATTGAACAGAATC 59.581 38.462 0.00 0.00 0.00 2.52
2618 2846 2.029918 GCAGCTGGTTTTTCCTAACCTG 60.030 50.000 17.12 7.41 46.28 4.00
2640 2868 1.750018 CCAATGCCATCGCCTGTCA 60.750 57.895 0.00 0.00 0.00 3.58
3119 3531 6.775708 ACATTACCACCTTAACACATACAGT 58.224 36.000 0.00 0.00 0.00 3.55
3120 3532 7.681939 AACATTACCACCTTAACACATACAG 57.318 36.000 0.00 0.00 0.00 2.74
3121 3533 7.720074 TCAAACATTACCACCTTAACACATACA 59.280 33.333 0.00 0.00 0.00 2.29
3122 3534 8.019094 GTCAAACATTACCACCTTAACACATAC 58.981 37.037 0.00 0.00 0.00 2.39
3123 3535 7.940137 AGTCAAACATTACCACCTTAACACATA 59.060 33.333 0.00 0.00 0.00 2.29
3137 3552 4.025229 TCAGCGTGAACAGTCAAACATTAC 60.025 41.667 0.00 0.00 34.87 1.89
3156 3596 0.461870 TGGTGTGTGTCTGTGTCAGC 60.462 55.000 0.00 0.00 0.00 4.26
3159 3599 2.545526 CTGATTGGTGTGTGTCTGTGTC 59.454 50.000 0.00 0.00 0.00 3.67
3165 3609 3.472652 TGGTAACTGATTGGTGTGTGTC 58.527 45.455 0.00 0.00 37.61 3.67
3271 4036 7.669722 AGAAAACAGCTTTGTAAGGATGGATAA 59.330 33.333 0.00 0.00 0.00 1.75
3314 4079 7.308229 GGAAATATCGATTTCTCATCCAACTGG 60.308 40.741 1.71 0.00 46.93 4.00
3349 4114 6.154021 AGCAACTTAATTTGATTCTGCAGGAT 59.846 34.615 15.13 11.48 0.00 3.24
3352 4117 7.533426 AGTAGCAACTTAATTTGATTCTGCAG 58.467 34.615 7.63 7.63 29.00 4.41
3509 4280 6.115448 ACAGGAATAGTGCAGTTAGAAACT 57.885 37.500 0.00 0.00 44.06 2.66
3510 4281 6.803154 AACAGGAATAGTGCAGTTAGAAAC 57.197 37.500 0.00 0.00 0.00 2.78
3513 4284 7.764443 GTCATTAACAGGAATAGTGCAGTTAGA 59.236 37.037 0.00 0.00 30.65 2.10
3548 4320 7.783042 ACTACTGATATAAAACAGAGTGACCC 58.217 38.462 0.00 0.00 37.54 4.46
3574 4346 9.676861 TTGAACTCTAGTCATGAAATCATCATT 57.323 29.630 0.00 0.00 46.85 2.57
4137 4944 3.018856 TGTGGCCAAAGCTATCTTCATG 58.981 45.455 7.24 0.00 39.73 3.07
4196 5007 3.756434 TGCCAGTTCATAAGTTGGTTAGC 59.244 43.478 0.00 0.00 33.21 3.09
4400 5214 1.886542 ACGGCAAAATTTCAGAGGACC 59.113 47.619 0.00 0.00 0.00 4.46
4530 5356 3.128242 CAGGCAAACAGCTGAGGATAAAG 59.872 47.826 23.35 2.21 44.79 1.85
4557 5383 0.865769 CAAAGTTGTCGGAACCGGAG 59.134 55.000 9.46 0.00 40.25 4.63
4570 5396 6.627395 TTCATACACAACGGATTCAAAGTT 57.373 33.333 0.00 0.00 0.00 2.66
4571 5397 6.817765 ATTCATACACAACGGATTCAAAGT 57.182 33.333 0.00 0.00 0.00 2.66
4581 5407 7.525688 ACAGAACATCTATTCATACACAACG 57.474 36.000 0.00 0.00 0.00 4.10
4594 5424 6.378280 TGCTCTCATACTCAACAGAACATCTA 59.622 38.462 0.00 0.00 0.00 1.98
4618 5448 3.931468 AGTTTCGCAGTTCTCTGATCATG 59.069 43.478 0.00 0.00 43.76 3.07
4639 5469 1.518056 AATCAGCAACCACCGTGCAG 61.518 55.000 0.00 0.00 44.74 4.41
4654 5484 3.737972 CGTGGAGATCGATGTTGGAATCA 60.738 47.826 0.54 0.00 0.00 2.57
4699 5529 7.042950 CAGTGGATTTTGGCAATAATGATCAA 58.957 34.615 0.00 0.00 0.00 2.57
4738 5575 9.566530 TGTCGACATGTTTATTTTTCCAATATG 57.433 29.630 15.76 0.00 0.00 1.78
4739 5576 9.567848 GTGTCGACATGTTTATTTTTCCAATAT 57.432 29.630 23.12 0.00 0.00 1.28
4740 5577 8.788806 AGTGTCGACATGTTTATTTTTCCAATA 58.211 29.630 23.12 0.00 0.00 1.90
4741 5578 7.657336 AGTGTCGACATGTTTATTTTTCCAAT 58.343 30.769 23.12 0.00 0.00 3.16
4742 5579 7.012894 AGAGTGTCGACATGTTTATTTTTCCAA 59.987 33.333 23.12 0.00 0.00 3.53
4744 5581 6.899114 AGAGTGTCGACATGTTTATTTTTCC 58.101 36.000 23.12 3.60 0.00 3.13
4751 5591 6.317893 TGCTATAGAGAGTGTCGACATGTTTA 59.682 38.462 23.12 11.23 0.00 2.01
4760 5600 5.736486 TTGTACTGCTATAGAGAGTGTCG 57.264 43.478 3.21 0.00 0.00 4.35
4768 5608 9.667107 ACTGCTTAAATTTTGTACTGCTATAGA 57.333 29.630 3.21 0.00 0.00 1.98
4790 5630 2.543641 GGTACGTGGGTATTGTACTGC 58.456 52.381 0.00 0.00 38.74 4.40
4794 5634 6.314120 AGTATATGGGTACGTGGGTATTGTA 58.686 40.000 0.00 0.00 0.00 2.41
4800 5640 2.091166 TGGAGTATATGGGTACGTGGGT 60.091 50.000 0.00 0.00 0.00 4.51
4806 5646 7.058023 TGTGTTATGTGGAGTATATGGGTAC 57.942 40.000 0.00 0.00 0.00 3.34
4853 5693 4.675976 AATTATGTAATGGTCGACCCGA 57.324 40.909 31.19 14.90 35.15 5.14
4854 5694 4.812091 TCAAATTATGTAATGGTCGACCCG 59.188 41.667 31.19 2.02 35.15 5.28
4855 5695 5.277828 GCTCAAATTATGTAATGGTCGACCC 60.278 44.000 31.19 16.36 34.29 4.46
4856 5696 5.295787 TGCTCAAATTATGTAATGGTCGACC 59.704 40.000 28.17 28.17 0.00 4.79
4901 5741 9.896645 ACATCTTGAATACATGAGAAACTATGT 57.103 29.630 0.00 0.00 40.39 2.29
4906 5746 8.044060 TGGAACATCTTGAATACATGAGAAAC 57.956 34.615 0.00 0.00 34.54 2.78
4957 5798 1.334869 GGAAATATCCACGGCTGCTTG 59.665 52.381 0.00 0.00 45.79 4.01
5052 5894 4.655963 AGTTCAGTGTGGTTCTTGCATAT 58.344 39.130 0.00 0.00 0.00 1.78
5064 5906 7.376866 CAGTTGCAAATTTAGTAGTTCAGTGTG 59.623 37.037 0.00 0.00 0.00 3.82
5066 5908 6.360681 GCAGTTGCAAATTTAGTAGTTCAGTG 59.639 38.462 0.00 0.00 41.59 3.66
5181 6106 0.179234 GTTCCCTTCCTCCTAGCAGC 59.821 60.000 0.00 0.00 0.00 5.25
5263 6188 9.634163 AAAATTAATCTACAAATCAAACGGTCC 57.366 29.630 0.00 0.00 0.00 4.46
5293 6218 1.094785 CCTTGCCACCGGACATAAAG 58.905 55.000 9.46 5.06 0.00 1.85
5294 6219 0.963355 GCCTTGCCACCGGACATAAA 60.963 55.000 9.46 0.00 0.00 1.40
5329 6254 2.284754 TCAAAAGGTAGCATGCCACA 57.715 45.000 18.05 0.00 46.86 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.