Multiple sequence alignment - TraesCS5A01G296300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G296300 chr5A 100.000 5285 0 0 1 5285 504771707 504776991 0.000000e+00 9760.0
1 TraesCS5A01G296300 chr5D 89.408 2719 176 51 2373 5032 399151299 399153964 0.000000e+00 3323.0
2 TraesCS5A01G296300 chr5D 90.271 812 37 15 1582 2360 399150680 399151482 0.000000e+00 1024.0
3 TraesCS5A01G296300 chr5D 87.479 583 43 13 968 1546 399150121 399150677 0.000000e+00 645.0
4 TraesCS5A01G296300 chr5B 90.726 1639 88 33 1927 3533 479325360 479326966 0.000000e+00 2126.0
5 TraesCS5A01G296300 chr5B 88.622 1538 102 25 3532 5032 479327124 479328625 0.000000e+00 1803.0
6 TraesCS5A01G296300 chr5B 98.377 493 8 0 336 828 41083938 41084430 0.000000e+00 867.0
7 TraesCS5A01G296300 chr5B 87.761 670 45 25 826 1477 479324144 479324794 0.000000e+00 749.0
8 TraesCS5A01G296300 chr5B 84.455 431 40 10 1484 1911 479324884 479325290 2.970000e-107 399.0
9 TraesCS5A01G296300 chr5B 88.770 187 15 5 2373 2556 479325614 479325797 1.920000e-54 224.0
10 TraesCS5A01G296300 chr5B 88.525 183 16 3 2183 2360 479325811 479325993 3.210000e-52 217.0
11 TraesCS5A01G296300 chr6A 98.188 828 15 0 1 828 105158635 105157808 0.000000e+00 1447.0
12 TraesCS5A01G296300 chr3A 97.252 837 22 1 1 837 222081107 222081942 0.000000e+00 1417.0
13 TraesCS5A01G296300 chr7B 97.105 829 24 0 1 829 711170877 711171705 0.000000e+00 1399.0
14 TraesCS5A01G296300 chr4A 96.984 829 19 1 1 829 216812926 216812104 0.000000e+00 1387.0
15 TraesCS5A01G296300 chr7A 96.643 834 24 3 1 831 224970563 224969731 0.000000e+00 1382.0
16 TraesCS5A01G296300 chr1B 95.809 692 21 1 137 828 331127289 331127972 0.000000e+00 1110.0
17 TraesCS5A01G296300 chr1A 96.957 493 12 1 336 828 532534433 532533944 0.000000e+00 824.0
18 TraesCS5A01G296300 chr1A 100.000 45 0 0 785 829 532536017 532536061 3.390000e-12 84.2
19 TraesCS5A01G296300 chr3B 86.708 647 71 10 1254 1895 170130524 170131160 0.000000e+00 704.0
20 TraesCS5A01G296300 chr3B 85.526 76 11 0 5063 5138 825974931 825974856 4.390000e-11 80.5
21 TraesCS5A01G296300 chr1D 96.591 264 9 0 3725 3988 110387740 110388003 6.280000e-119 438.0
22 TraesCS5A01G296300 chr1D 92.469 239 15 3 1062 1298 91563939 91564176 6.560000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G296300 chr5A 504771707 504776991 5284 False 9760.000000 9760 100.000000 1 5285 1 chr5A.!!$F1 5284
1 TraesCS5A01G296300 chr5D 399150121 399153964 3843 False 1664.000000 3323 89.052667 968 5032 3 chr5D.!!$F1 4064
2 TraesCS5A01G296300 chr5B 479324144 479328625 4481 False 919.666667 2126 88.143167 826 5032 6 chr5B.!!$F2 4206
3 TraesCS5A01G296300 chr6A 105157808 105158635 827 True 1447.000000 1447 98.188000 1 828 1 chr6A.!!$R1 827
4 TraesCS5A01G296300 chr3A 222081107 222081942 835 False 1417.000000 1417 97.252000 1 837 1 chr3A.!!$F1 836
5 TraesCS5A01G296300 chr7B 711170877 711171705 828 False 1399.000000 1399 97.105000 1 829 1 chr7B.!!$F1 828
6 TraesCS5A01G296300 chr4A 216812104 216812926 822 True 1387.000000 1387 96.984000 1 829 1 chr4A.!!$R1 828
7 TraesCS5A01G296300 chr7A 224969731 224970563 832 True 1382.000000 1382 96.643000 1 831 1 chr7A.!!$R1 830
8 TraesCS5A01G296300 chr1B 331127289 331127972 683 False 1110.000000 1110 95.809000 137 828 1 chr1B.!!$F1 691
9 TraesCS5A01G296300 chr3B 170130524 170131160 636 False 704.000000 704 86.708000 1254 1895 1 chr3B.!!$F1 641


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 836 1.141881 GAGAATCTGAGCCGCGGAA 59.858 57.895 33.48 12.84 35.03 4.30 F
2004 2189 0.250553 TGCTTTGTTGGTAGGTCCGG 60.251 55.000 0.00 0.00 39.52 5.14 F
2380 2571 0.400594 ACAGCCCTTTTAGCGGAAGT 59.599 50.000 0.00 0.00 34.64 3.01 F
4026 4401 0.677414 GGAGAGTCGAGTCGAACCCT 60.677 60.000 18.42 13.95 37.72 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2640 0.690762 AGGCACGGTGGTGTTAGAAT 59.309 50.000 10.6 0.0 46.13 2.40 R
2928 3132 1.004440 AGCGGACAGGACAAGCTTC 60.004 57.895 0.0 0.0 34.05 3.86 R
4271 4655 1.682323 GTTCCTCCTACGGGATCTCAC 59.318 57.143 0.0 0.0 41.36 3.51 R
5037 5447 0.108396 GGTGCTTGGGTGCCAAAAAT 59.892 50.000 0.0 0.0 43.44 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 6.591935 AGTCTGTGAATTTCTGACCAACTTA 58.408 36.000 13.57 0.00 35.42 2.24
214 215 4.168760 CAACTTAAGGTAAGGACGTACGG 58.831 47.826 21.06 1.43 40.08 4.02
530 534 2.225491 CGCCAAAAGTTTTCCTCGATCA 59.775 45.455 0.00 0.00 0.00 2.92
554 558 3.152341 CAGCTGATTTCCTTGGAGTTGT 58.848 45.455 8.42 0.00 0.00 3.32
676 680 2.368875 CCTCCACTGTGTTGAAGTAGGT 59.631 50.000 7.08 0.00 0.00 3.08
832 836 1.141881 GAGAATCTGAGCCGCGGAA 59.858 57.895 33.48 12.84 35.03 4.30
833 837 1.148759 GAGAATCTGAGCCGCGGAAC 61.149 60.000 33.48 21.85 35.03 3.62
834 838 1.447838 GAATCTGAGCCGCGGAACA 60.448 57.895 33.48 25.27 35.03 3.18
836 840 2.859273 AATCTGAGCCGCGGAACAGG 62.859 60.000 34.20 22.91 35.03 4.00
837 841 4.069232 CTGAGCCGCGGAACAGGA 62.069 66.667 33.48 4.29 0.00 3.86
838 842 3.997064 CTGAGCCGCGGAACAGGAG 62.997 68.421 33.48 10.98 0.00 3.69
874 878 2.120312 CTTTTCTACTCCCCTCCTCCC 58.880 57.143 0.00 0.00 0.00 4.30
893 911 3.330720 CCCTTCCAGAACCCGCCT 61.331 66.667 0.00 0.00 0.00 5.52
894 912 2.269241 CCTTCCAGAACCCGCCTC 59.731 66.667 0.00 0.00 0.00 4.70
899 917 2.685380 CAGAACCCGCCTCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
907 925 2.124693 CGCCTCCCTCTGACCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
943 962 4.470170 TCGCACGATCGACCACGG 62.470 66.667 24.34 4.66 40.21 4.94
1293 1316 2.506962 GACACCAACACCGTCCCA 59.493 61.111 0.00 0.00 0.00 4.37
1298 1321 1.128809 ACCAACACCGTCCCATGGTA 61.129 55.000 11.73 0.00 42.38 3.25
1299 1322 0.675522 CCAACACCGTCCCATGGTAC 60.676 60.000 11.73 3.73 34.66 3.34
1300 1323 1.017177 CAACACCGTCCCATGGTACG 61.017 60.000 21.92 21.92 34.66 3.67
1326 1349 2.978010 CGCAACCGCCCAACTCTT 60.978 61.111 0.00 0.00 33.11 2.85
1343 1366 1.001181 TCTTTTAACTCCCCCGACACG 59.999 52.381 0.00 0.00 0.00 4.49
1344 1367 1.001181 CTTTTAACTCCCCCGACACGA 59.999 52.381 0.00 0.00 0.00 4.35
1345 1368 0.318120 TTTAACTCCCCCGACACGAC 59.682 55.000 0.00 0.00 0.00 4.34
1357 1380 3.918977 CACGACGACACCCACCCA 61.919 66.667 0.00 0.00 0.00 4.51
1458 1487 2.509336 GCCATCACGGTCAGTCGG 60.509 66.667 0.00 0.00 36.97 4.79
1477 1509 1.134068 GGTAGATGCTGGTTCCCTTCC 60.134 57.143 0.00 0.00 0.00 3.46
1546 1662 1.251251 GATTGGTTCCTGCAGCTTGT 58.749 50.000 8.66 0.00 0.00 3.16
1548 1664 0.746063 TTGGTTCCTGCAGCTTGTTG 59.254 50.000 8.66 0.00 0.00 3.33
1549 1665 1.006922 GGTTCCTGCAGCTTGTTGC 60.007 57.895 8.66 2.51 44.33 4.17
1550 1666 1.006922 GTTCCTGCAGCTTGTTGCC 60.007 57.895 8.66 0.00 43.43 4.52
1557 1673 0.316204 GCAGCTTGTTGCCAGTTCAT 59.684 50.000 0.00 0.00 44.23 2.57
1633 1750 4.202305 TGGTGGGATTGGACAAATTGAAAC 60.202 41.667 0.00 0.00 0.00 2.78
1665 1782 0.529833 CGCATTTGGTGGTGGCATAA 59.470 50.000 0.00 0.00 0.00 1.90
1747 1866 5.475564 AGTTCAGTTCACTCCTTCTCTAGTC 59.524 44.000 0.00 0.00 0.00 2.59
1784 1907 3.375922 GGTTCACTGTTGTCCTCGAAAAA 59.624 43.478 0.00 0.00 0.00 1.94
1830 1957 3.679980 GCTAGATTTGACAGACGAGCAAA 59.320 43.478 0.00 0.00 36.15 3.68
1881 2008 3.512329 TGACCTGCTTTGCATGATTTCAT 59.488 39.130 0.00 0.00 38.13 2.57
1890 2017 6.578163 TTTGCATGATTTCATCTGTCTGAA 57.422 33.333 0.00 0.00 33.61 3.02
1923 2057 8.870116 ACTTTCTCTTGGCCAATAAAATAAGTT 58.130 29.630 20.85 6.56 0.00 2.66
1925 2059 9.487790 TTTCTCTTGGCCAATAAAATAAGTTTG 57.512 29.630 20.85 2.08 0.00 2.93
2004 2189 0.250553 TGCTTTGTTGGTAGGTCCGG 60.251 55.000 0.00 0.00 39.52 5.14
2078 2263 5.853572 TTCAGGGTTTGGTAGATAAGGTT 57.146 39.130 0.00 0.00 0.00 3.50
2079 2264 6.956102 TTCAGGGTTTGGTAGATAAGGTTA 57.044 37.500 0.00 0.00 0.00 2.85
2082 2267 7.935405 TCAGGGTTTGGTAGATAAGGTTATTT 58.065 34.615 0.00 0.00 0.00 1.40
2083 2268 9.060137 TCAGGGTTTGGTAGATAAGGTTATTTA 57.940 33.333 0.00 0.00 0.00 1.40
2122 2307 8.489559 CAATTATTTGGTGTTGTTGATCAAGTG 58.510 33.333 8.80 0.00 36.66 3.16
2130 2315 3.044235 TGTTGATCAAGTGATGCGTCT 57.956 42.857 8.80 0.00 34.37 4.18
2154 2339 1.141053 ACAAGGACAGGTTGGACACTC 59.859 52.381 0.00 0.00 0.00 3.51
2249 2435 4.573607 AGCAGTTATGTGTATGCTGTCATG 59.426 41.667 0.00 0.00 46.75 3.07
2297 2488 1.992667 GCTTTTAAAATGGAGCGTGGC 59.007 47.619 0.09 0.00 0.00 5.01
2371 2562 7.888546 ACTCAAGTTTACATATACAGCCCTTTT 59.111 33.333 0.00 0.00 0.00 2.27
2380 2571 0.400594 ACAGCCCTTTTAGCGGAAGT 59.599 50.000 0.00 0.00 34.64 3.01
2404 2595 5.221843 TGCTCTGGTACTTTGGACTTTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
2405 2596 6.014070 TGCTCTGGTACTTTGGACTTTGTATA 60.014 38.462 0.00 0.00 0.00 1.47
2408 2599 7.391620 TCTGGTACTTTGGACTTTGTATAAGG 58.608 38.462 0.00 0.00 0.00 2.69
2432 2623 4.396166 GGATAACAGCTGCAGTTATGTGTT 59.604 41.667 27.88 17.45 41.02 3.32
2433 2624 3.904136 AACAGCTGCAGTTATGTGTTC 57.096 42.857 15.27 0.00 0.00 3.18
2438 2629 3.296516 GCAGTTATGTGTTCGCTGC 57.703 52.632 0.00 0.00 44.24 5.25
2442 2633 4.801147 CAGTTATGTGTTCGCTGCATAT 57.199 40.909 0.00 0.00 0.00 1.78
2443 2634 4.766007 CAGTTATGTGTTCGCTGCATATC 58.234 43.478 0.00 0.00 0.00 1.63
2444 2635 3.490896 AGTTATGTGTTCGCTGCATATCG 59.509 43.478 0.00 0.00 0.00 2.92
2445 2636 1.939974 ATGTGTTCGCTGCATATCGT 58.060 45.000 0.00 0.00 0.00 3.73
2446 2637 1.277326 TGTGTTCGCTGCATATCGTC 58.723 50.000 0.00 0.00 0.00 4.20
2447 2638 1.135112 TGTGTTCGCTGCATATCGTCT 60.135 47.619 0.00 0.00 0.00 4.18
2449 2640 3.113322 GTGTTCGCTGCATATCGTCTTA 58.887 45.455 0.00 0.00 0.00 2.10
2471 2663 1.206132 TCTAACACCACCGTGCCTATG 59.794 52.381 0.00 0.00 44.40 2.23
2480 2672 2.486203 CACCGTGCCTATGTTGCTTTTA 59.514 45.455 0.00 0.00 0.00 1.52
2493 2685 3.296322 TGCTTTTAAAATGGAGCGTGG 57.704 42.857 0.09 0.00 37.94 4.94
2619 2816 0.800012 TGTTAAATTCGGCCGCTGTC 59.200 50.000 23.51 7.37 0.00 3.51
2633 2830 1.923204 CGCTGTCAGCTGACTTACATC 59.077 52.381 38.81 22.47 44.99 3.06
2703 2903 8.093307 TCTGTATGCTTTTTATGCCAAATCAAA 58.907 29.630 0.00 0.00 0.00 2.69
2713 2913 9.730705 TTTTATGCCAAATCAAATAAATCACCA 57.269 25.926 0.00 0.00 0.00 4.17
2862 3065 6.041069 GCCTATCTGAAGACCTCTTAAGCTAA 59.959 42.308 0.00 0.00 34.95 3.09
2863 3066 7.418025 GCCTATCTGAAGACCTCTTAAGCTAAA 60.418 40.741 0.00 0.00 34.95 1.85
2870 3073 7.936847 TGAAGACCTCTTAAGCTAAAACATTCA 59.063 33.333 0.00 0.00 36.11 2.57
2872 3075 8.100508 AGACCTCTTAAGCTAAAACATTCAAC 57.899 34.615 0.00 0.00 0.00 3.18
2877 3080 8.458573 TCTTAAGCTAAAACATTCAACCAAGA 57.541 30.769 0.00 0.00 0.00 3.02
2922 3126 6.022315 AGATTGTTCCTATCTAGATCCCCTG 58.978 44.000 8.95 0.00 30.74 4.45
2934 3138 3.574354 GATCCCCTGATCTTGAAGCTT 57.426 47.619 0.00 0.00 43.44 3.74
2937 3141 2.026822 TCCCCTGATCTTGAAGCTTGTC 60.027 50.000 2.10 0.00 0.00 3.18
2943 3147 2.550830 TCTTGAAGCTTGTCCTGTCC 57.449 50.000 2.10 0.00 0.00 4.02
2944 3148 1.151668 CTTGAAGCTTGTCCTGTCCG 58.848 55.000 2.10 0.00 0.00 4.79
2960 3164 5.056480 CCTGTCCGCTCATTAACATGATTA 58.944 41.667 0.00 0.00 38.81 1.75
2964 3168 6.597672 TGTCCGCTCATTAACATGATTACTTT 59.402 34.615 0.00 0.00 38.81 2.66
2978 3183 8.815912 ACATGATTACTTTAGGGCATTTCTTTT 58.184 29.630 0.00 0.00 0.00 2.27
3005 3210 3.577848 TGGGTTGGATTTGTTGGATGAAG 59.422 43.478 0.00 0.00 0.00 3.02
3023 3228 7.341769 TGGATGAAGGGTGGAATAATTAACTTG 59.658 37.037 0.00 0.00 0.00 3.16
3036 3241 3.611766 TTAACTTGCTGCTCCTAGTCC 57.388 47.619 0.00 0.00 0.00 3.85
3057 3262 5.491635 CCTTTGATAAGAAAGGCTGTAGC 57.508 43.478 0.00 0.00 44.26 3.58
3059 3264 6.349300 CCTTTGATAAGAAAGGCTGTAGCTA 58.651 40.000 3.63 0.00 44.26 3.32
3068 3273 3.260269 AGGCTGTAGCTACATATCCCA 57.740 47.619 26.22 2.39 41.70 4.37
3078 3283 6.192970 AGCTACATATCCCATGTTAAGCTT 57.807 37.500 3.48 3.48 39.55 3.74
3103 3310 5.277058 GCGATGATTACTTGGATTCAGTGAC 60.277 44.000 0.00 0.00 0.00 3.67
3112 3319 7.027874 ACTTGGATTCAGTGACCCTTTATTA 57.972 36.000 10.98 0.00 0.00 0.98
3143 3350 2.438021 ACAGTGGAAGTAAGCCTGACAA 59.562 45.455 0.00 0.00 0.00 3.18
3150 3357 3.838244 AGTAAGCCTGACAAACACTGA 57.162 42.857 0.00 0.00 0.00 3.41
3152 3359 1.299541 AAGCCTGACAAACACTGACG 58.700 50.000 0.00 0.00 0.00 4.35
3157 3364 3.191669 CCTGACAAACACTGACGTACAA 58.808 45.455 0.00 0.00 0.00 2.41
3194 3402 9.461312 TGGCAATAATTTTACTGACATAACTCT 57.539 29.630 0.00 0.00 0.00 3.24
3208 3416 8.628630 TGACATAACTCTGATCTCTACTATGG 57.371 38.462 0.00 0.00 0.00 2.74
3255 3463 9.987272 TTGATAGAGAAACATATGTAGGTGATG 57.013 33.333 9.21 0.00 0.00 3.07
3257 3465 6.239217 AGAGAAACATATGTAGGTGATGCA 57.761 37.500 9.21 0.00 0.00 3.96
3271 3479 3.356290 GTGATGCATTTCCCCTTACAGT 58.644 45.455 0.00 0.00 0.00 3.55
3272 3480 3.763897 GTGATGCATTTCCCCTTACAGTT 59.236 43.478 0.00 0.00 0.00 3.16
3318 3529 1.180029 ACCATGCCAACAGAATGCTC 58.820 50.000 0.00 0.00 42.53 4.26
3363 3574 9.134734 GATTTCTCGTTAAAATTACAAATGCCA 57.865 29.630 0.00 0.00 0.00 4.92
3365 3576 9.482627 TTTCTCGTTAAAATTACAAATGCCAAT 57.517 25.926 0.00 0.00 0.00 3.16
3386 3597 9.261318 GCCAATTTGCGATTAAAATTTACTTTC 57.739 29.630 0.00 0.00 35.55 2.62
3418 3629 9.933723 AAATTCCTCTCTATTTGTTTCAATTGG 57.066 29.630 5.42 0.00 0.00 3.16
3446 3658 5.061721 AGTTCCAAGTCTGTATTTGGGTT 57.938 39.130 3.66 0.00 41.59 4.11
3476 3692 9.431887 GTACTTGTCCTCACAAACTTCATATTA 57.568 33.333 0.00 0.00 42.13 0.98
3502 3718 8.425577 AGAAATACCATCTTATCAAGAACACG 57.574 34.615 0.00 0.00 41.63 4.49
3513 3729 1.670811 CAAGAACACGTGACCAGCTTT 59.329 47.619 25.01 3.39 0.00 3.51
3516 3732 3.740115 AGAACACGTGACCAGCTTTTAT 58.260 40.909 25.01 0.00 0.00 1.40
3529 3745 4.646492 CCAGCTTTTATCATGCCTTACCTT 59.354 41.667 0.00 0.00 0.00 3.50
3533 3749 7.917505 CAGCTTTTATCATGCCTTACCTTTTAG 59.082 37.037 0.00 0.00 0.00 1.85
3535 3751 8.251026 GCTTTTATCATGCCTTACCTTTTAGTT 58.749 33.333 0.00 0.00 0.00 2.24
3537 3753 9.921637 TTTTATCATGCCTTACCTTTTAGTTTG 57.078 29.630 0.00 0.00 0.00 2.93
3539 3755 6.969993 TCATGCCTTACCTTTTAGTTTGTT 57.030 33.333 0.00 0.00 0.00 2.83
3540 3756 8.644374 ATCATGCCTTACCTTTTAGTTTGTTA 57.356 30.769 0.00 0.00 0.00 2.41
3541 3757 8.644374 TCATGCCTTACCTTTTAGTTTGTTAT 57.356 30.769 0.00 0.00 0.00 1.89
3563 3938 2.158986 AGAGAACCAGAATGATGGCTCG 60.159 50.000 0.00 0.00 44.80 5.03
3568 3943 4.955811 ACCAGAATGATGGCTCGTTATA 57.044 40.909 0.00 0.00 44.80 0.98
3574 3949 6.364706 CAGAATGATGGCTCGTTATACTCTTC 59.635 42.308 0.00 0.00 39.69 2.87
3593 3968 4.335315 TCTTCTGACATTGTGTTTGGTGAC 59.665 41.667 0.00 0.00 0.00 3.67
3600 3975 2.897846 TGTTTGGTGACGGTGCCG 60.898 61.111 9.29 9.29 46.03 5.69
3624 3999 6.075572 CGTGTTTCAGCTACTAAAAGTTTTGC 60.076 38.462 11.18 5.76 0.00 3.68
3627 4002 5.744666 TCAGCTACTAAAAGTTTTGCGTT 57.255 34.783 11.18 0.00 0.00 4.84
3633 4008 5.674215 ACTAAAAGTTTTGCGTTTCGTTG 57.326 34.783 11.18 0.00 31.56 4.10
3638 4013 3.776340 AGTTTTGCGTTTCGTTGGATTT 58.224 36.364 0.00 0.00 0.00 2.17
3669 4044 8.479313 TTGAACTACTGTGATCATACATCAAC 57.521 34.615 0.00 0.00 0.00 3.18
3670 4045 7.610865 TGAACTACTGTGATCATACATCAACA 58.389 34.615 0.00 0.00 0.00 3.33
3705 4080 7.574607 ACCCACATAGTAAAATAGGAGGAAAG 58.425 38.462 0.00 0.00 0.00 2.62
3862 4237 3.575630 TCGAGTGATTCTGAAAGGAACG 58.424 45.455 0.00 0.00 0.00 3.95
3989 4364 7.607991 AGTTAACATAGAGTGGAAATTGGTGAG 59.392 37.037 8.61 0.00 0.00 3.51
3999 4374 6.828785 AGTGGAAATTGGTGAGGTAATACATC 59.171 38.462 0.00 0.00 0.00 3.06
4026 4401 0.677414 GGAGAGTCGAGTCGAACCCT 60.677 60.000 18.42 13.95 37.72 4.34
4047 4422 8.803397 ACCCTCTGTACCAATTTTATTTAGTC 57.197 34.615 0.00 0.00 0.00 2.59
4072 4456 7.933033 TCGATCATCATTATGGACTCATTGAAA 59.067 33.333 0.00 0.00 34.96 2.69
4080 4464 7.595819 TTATGGACTCATTGAAACAACCTTT 57.404 32.000 0.00 0.00 34.96 3.11
4081 4465 5.514274 TGGACTCATTGAAACAACCTTTC 57.486 39.130 0.00 0.00 0.00 2.62
4082 4466 4.952957 TGGACTCATTGAAACAACCTTTCA 59.047 37.500 0.00 0.00 36.71 2.69
4083 4467 5.598005 TGGACTCATTGAAACAACCTTTCAT 59.402 36.000 0.00 0.00 38.12 2.57
4086 4470 7.495606 GGACTCATTGAAACAACCTTTCATTTT 59.504 33.333 0.00 0.00 38.12 1.82
4087 4471 9.528018 GACTCATTGAAACAACCTTTCATTTTA 57.472 29.630 0.00 0.00 38.12 1.52
4089 4473 9.533253 CTCATTGAAACAACCTTTCATTTTACT 57.467 29.630 0.00 0.00 38.12 2.24
4090 4474 9.883142 TCATTGAAACAACCTTTCATTTTACTT 57.117 25.926 0.00 0.00 38.12 2.24
4115 4499 9.467258 TTCTCATTTTCTTGCAATTAAACTCAG 57.533 29.630 0.00 0.00 0.00 3.35
4312 4698 3.820467 ACGGCAACTTTGAGATTCATTCA 59.180 39.130 0.00 0.00 0.00 2.57
4378 4765 1.153958 GAAATGCTTCGCTGGTGCC 60.154 57.895 0.00 0.00 35.36 5.01
4383 4770 0.322456 TGCTTCGCTGGTGCCTAATT 60.322 50.000 0.00 0.00 35.36 1.40
4541 4931 7.569957 GCATTTTCTGCCTTCATGTAGTTTTTG 60.570 37.037 0.00 0.00 45.66 2.44
4573 4975 5.574891 TTTGTTTTCTCTTGCAGCACTTA 57.425 34.783 0.00 0.00 0.00 2.24
4574 4976 5.772825 TTGTTTTCTCTTGCAGCACTTAT 57.227 34.783 0.00 0.00 0.00 1.73
4614 5016 5.596836 ACACCACATTGACAGAAATTGTT 57.403 34.783 0.00 0.00 41.05 2.83
4618 5020 8.203485 ACACCACATTGACAGAAATTGTTTATT 58.797 29.630 0.00 0.00 41.05 1.40
4619 5021 9.044150 CACCACATTGACAGAAATTGTTTATTT 57.956 29.630 0.00 0.00 41.05 1.40
4643 5045 6.426646 TTTGTTGCCACCCTTTTTACATAT 57.573 33.333 0.00 0.00 0.00 1.78
4652 5054 8.866093 GCCACCCTTTTTACATATATAAACCAT 58.134 33.333 0.00 0.00 0.00 3.55
4702 5105 8.984891 TTTTATTGCACAACAAAGATATCTGG 57.015 30.769 5.86 4.58 42.86 3.86
4770 5173 5.408356 AGCTTCACATTTTGCATCTTGATC 58.592 37.500 0.00 0.00 0.00 2.92
4792 5195 8.611257 TGATCTTCATTTAGGTTCCTTAAAGGA 58.389 33.333 0.00 0.00 44.10 3.36
4795 5198 9.243105 TCTTCATTTAGGTTCCTTAAAGGATTG 57.757 33.333 0.00 0.00 45.34 2.67
4796 5199 9.243105 CTTCATTTAGGTTCCTTAAAGGATTGA 57.757 33.333 0.00 0.00 45.34 2.57
4797 5200 8.807948 TCATTTAGGTTCCTTAAAGGATTGAG 57.192 34.615 0.00 0.00 45.34 3.02
4798 5201 8.390921 TCATTTAGGTTCCTTAAAGGATTGAGT 58.609 33.333 0.00 0.00 45.34 3.41
4799 5202 9.681062 CATTTAGGTTCCTTAAAGGATTGAGTA 57.319 33.333 0.00 0.00 45.34 2.59
4832 5235 6.957631 TGAATCATCTAGAAACTTAGGGCAA 58.042 36.000 0.00 0.00 0.00 4.52
4836 5239 5.483937 TCATCTAGAAACTTAGGGCAACTCA 59.516 40.000 0.00 0.00 0.00 3.41
4837 5240 6.156949 TCATCTAGAAACTTAGGGCAACTCAT 59.843 38.462 0.00 0.00 0.00 2.90
4843 5246 2.236395 ACTTAGGGCAACTCATACGCTT 59.764 45.455 0.00 0.00 0.00 4.68
4860 5263 2.932614 CGCTTACCCTCAAATCAGACAG 59.067 50.000 0.00 0.00 0.00 3.51
4865 5268 1.159285 CCTCAAATCAGACAGCGCAA 58.841 50.000 11.47 0.00 0.00 4.85
4867 5270 1.532437 CTCAAATCAGACAGCGCAACA 59.468 47.619 11.47 0.00 0.00 3.33
4868 5271 2.153645 TCAAATCAGACAGCGCAACAT 58.846 42.857 11.47 0.00 0.00 2.71
4879 5282 1.885157 CGCAACATGCCATCCAACT 59.115 52.632 0.00 0.00 41.12 3.16
4880 5283 0.457166 CGCAACATGCCATCCAACTG 60.457 55.000 0.00 0.00 41.12 3.16
4881 5284 0.604578 GCAACATGCCATCCAACTGT 59.395 50.000 0.00 0.00 37.42 3.55
4882 5285 1.818060 GCAACATGCCATCCAACTGTA 59.182 47.619 0.00 0.00 37.42 2.74
4883 5286 2.159338 GCAACATGCCATCCAACTGTAG 60.159 50.000 0.00 0.00 37.42 2.74
4884 5287 1.755179 ACATGCCATCCAACTGTAGC 58.245 50.000 0.00 0.00 0.00 3.58
4885 5288 1.004628 ACATGCCATCCAACTGTAGCA 59.995 47.619 0.00 0.00 34.28 3.49
4886 5289 1.674441 CATGCCATCCAACTGTAGCAG 59.326 52.381 0.00 0.00 37.52 4.24
4887 5290 0.677731 TGCCATCCAACTGTAGCAGC 60.678 55.000 0.00 0.00 34.37 5.25
4888 5291 0.677731 GCCATCCAACTGTAGCAGCA 60.678 55.000 0.00 0.00 34.37 4.41
4889 5292 1.825090 CCATCCAACTGTAGCAGCAA 58.175 50.000 0.00 0.00 34.37 3.91
4918 5321 9.573133 GTCTGGTTACATTTCTAATGGAATTTG 57.427 33.333 0.76 0.00 37.87 2.32
4931 5334 9.241919 TCTAATGGAATTTGACAAAGATAAGCA 57.758 29.630 6.77 0.00 37.87 3.91
5036 5446 7.475137 TGAATTAAACCCTATTCAACCTTGG 57.525 36.000 0.00 0.00 37.71 3.61
5037 5447 7.242359 TGAATTAAACCCTATTCAACCTTGGA 58.758 34.615 0.00 0.00 37.71 3.53
5038 5448 7.898636 TGAATTAAACCCTATTCAACCTTGGAT 59.101 33.333 0.00 0.00 37.71 3.41
5039 5449 8.679344 AATTAAACCCTATTCAACCTTGGATT 57.321 30.769 0.00 0.00 0.00 3.01
5040 5450 8.679344 ATTAAACCCTATTCAACCTTGGATTT 57.321 30.769 0.00 0.00 0.00 2.17
5041 5451 8.499288 TTAAACCCTATTCAACCTTGGATTTT 57.501 30.769 0.00 0.00 0.00 1.82
5042 5452 7.387265 AAACCCTATTCAACCTTGGATTTTT 57.613 32.000 0.00 0.00 0.00 1.94
5043 5453 6.358974 ACCCTATTCAACCTTGGATTTTTG 57.641 37.500 0.00 0.00 0.00 2.44
5044 5454 5.248248 ACCCTATTCAACCTTGGATTTTTGG 59.752 40.000 0.00 0.00 0.00 3.28
5045 5455 5.178061 CCTATTCAACCTTGGATTTTTGGC 58.822 41.667 0.00 0.00 0.00 4.52
5046 5456 4.703379 ATTCAACCTTGGATTTTTGGCA 57.297 36.364 0.00 0.00 0.00 4.92
5047 5457 3.467374 TCAACCTTGGATTTTTGGCAC 57.533 42.857 0.00 0.00 0.00 5.01
5048 5458 2.103941 TCAACCTTGGATTTTTGGCACC 59.896 45.455 0.00 0.00 0.00 5.01
5049 5459 1.055849 ACCTTGGATTTTTGGCACCC 58.944 50.000 0.00 0.00 0.00 4.61
5050 5460 1.055040 CCTTGGATTTTTGGCACCCA 58.945 50.000 0.00 0.00 0.00 4.51
5051 5461 1.419387 CCTTGGATTTTTGGCACCCAA 59.581 47.619 0.00 0.00 42.29 4.12
5052 5462 2.769893 CTTGGATTTTTGGCACCCAAG 58.230 47.619 13.57 13.57 44.84 3.61
5053 5463 0.396060 TGGATTTTTGGCACCCAAGC 59.604 50.000 0.00 0.00 44.84 4.01
5054 5464 0.396060 GGATTTTTGGCACCCAAGCA 59.604 50.000 0.00 0.00 44.84 3.91
5055 5465 1.511850 GATTTTTGGCACCCAAGCAC 58.488 50.000 0.00 0.00 44.84 4.40
5056 5466 0.108396 ATTTTTGGCACCCAAGCACC 59.892 50.000 0.00 0.00 44.84 5.01
5057 5467 2.303549 TTTTTGGCACCCAAGCACCG 62.304 55.000 0.00 0.00 44.84 4.94
5070 5480 4.802051 CACCGGTGGCCTCCCATG 62.802 72.222 27.57 12.29 44.51 3.66
5073 5483 4.864334 CGGTGGCCTCCCATGCTC 62.864 72.222 18.19 0.00 44.51 4.26
5074 5484 3.415087 GGTGGCCTCCCATGCTCT 61.415 66.667 13.20 0.00 44.51 4.09
5075 5485 2.124403 GTGGCCTCCCATGCTCTG 60.124 66.667 3.32 0.00 44.51 3.35
5076 5486 4.119363 TGGCCTCCCATGCTCTGC 62.119 66.667 3.32 0.00 35.79 4.26
5077 5487 3.806667 GGCCTCCCATGCTCTGCT 61.807 66.667 0.00 0.00 0.00 4.24
5078 5488 2.203181 GCCTCCCATGCTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
5079 5489 2.744243 GCCTCCCATGCTCTGCTCT 61.744 63.158 0.00 0.00 0.00 4.09
5080 5490 1.913722 CCTCCCATGCTCTGCTCTT 59.086 57.895 0.00 0.00 0.00 2.85
5081 5491 0.179051 CCTCCCATGCTCTGCTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
5082 5492 0.179051 CTCCCATGCTCTGCTCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
5083 5493 0.619832 TCCCATGCTCTGCTCTTCCT 60.620 55.000 0.00 0.00 0.00 3.36
5084 5494 0.179051 CCCATGCTCTGCTCTTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
5085 5495 0.530211 CCATGCTCTGCTCTTCCTCG 60.530 60.000 0.00 0.00 0.00 4.63
5086 5496 1.143620 ATGCTCTGCTCTTCCTCGC 59.856 57.895 0.00 0.00 0.00 5.03
5087 5497 2.202864 GCTCTGCTCTTCCTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
5088 5498 2.103934 CTCTGCTCTTCCTCGCCG 59.896 66.667 0.00 0.00 0.00 6.46
5089 5499 4.135153 TCTGCTCTTCCTCGCCGC 62.135 66.667 0.00 0.00 0.00 6.53
5130 5540 4.719369 GCTTCCTCGTCGTGCCGT 62.719 66.667 0.00 0.00 0.00 5.68
5131 5541 2.504244 CTTCCTCGTCGTGCCGTC 60.504 66.667 0.00 0.00 0.00 4.79
5132 5542 4.394078 TTCCTCGTCGTGCCGTCG 62.394 66.667 7.61 7.61 39.38 5.12
5164 5574 4.230603 CGGAGCTGGCAATGTCAT 57.769 55.556 0.00 0.00 0.00 3.06
5165 5575 3.384816 CGGAGCTGGCAATGTCATA 57.615 52.632 0.00 0.00 0.00 2.15
5166 5576 1.888215 CGGAGCTGGCAATGTCATAT 58.112 50.000 0.00 0.00 0.00 1.78
5167 5577 1.534163 CGGAGCTGGCAATGTCATATG 59.466 52.381 0.00 0.00 0.00 1.78
5168 5578 2.579873 GGAGCTGGCAATGTCATATGT 58.420 47.619 1.90 0.00 0.00 2.29
5169 5579 2.292569 GGAGCTGGCAATGTCATATGTG 59.707 50.000 1.90 0.00 0.00 3.21
5170 5580 1.679680 AGCTGGCAATGTCATATGTGC 59.320 47.619 1.90 5.07 36.24 4.57
5176 5586 3.480470 GCAATGTCATATGTGCCCTAGT 58.520 45.455 1.90 0.00 0.00 2.57
5177 5587 3.499918 GCAATGTCATATGTGCCCTAGTC 59.500 47.826 1.90 0.00 0.00 2.59
5178 5588 4.707105 CAATGTCATATGTGCCCTAGTCA 58.293 43.478 1.90 0.00 0.00 3.41
5179 5589 5.125356 CAATGTCATATGTGCCCTAGTCAA 58.875 41.667 1.90 0.00 0.00 3.18
5180 5590 4.835284 TGTCATATGTGCCCTAGTCAAA 57.165 40.909 1.90 0.00 0.00 2.69
5181 5591 5.372343 TGTCATATGTGCCCTAGTCAAAT 57.628 39.130 1.90 0.00 0.00 2.32
5182 5592 5.754782 TGTCATATGTGCCCTAGTCAAATT 58.245 37.500 1.90 0.00 0.00 1.82
5183 5593 6.894682 TGTCATATGTGCCCTAGTCAAATTA 58.105 36.000 1.90 0.00 0.00 1.40
5184 5594 6.765989 TGTCATATGTGCCCTAGTCAAATTAC 59.234 38.462 1.90 0.00 0.00 1.89
5185 5595 5.989168 TCATATGTGCCCTAGTCAAATTACG 59.011 40.000 1.90 0.00 0.00 3.18
5186 5596 3.688694 TGTGCCCTAGTCAAATTACGT 57.311 42.857 0.00 0.00 0.00 3.57
5187 5597 3.592059 TGTGCCCTAGTCAAATTACGTC 58.408 45.455 0.00 0.00 0.00 4.34
5188 5598 2.601763 GTGCCCTAGTCAAATTACGTCG 59.398 50.000 0.00 0.00 0.00 5.12
5189 5599 1.591619 GCCCTAGTCAAATTACGTCGC 59.408 52.381 0.00 0.00 0.00 5.19
5190 5600 2.199236 CCCTAGTCAAATTACGTCGCC 58.801 52.381 0.00 0.00 0.00 5.54
5191 5601 1.850441 CCTAGTCAAATTACGTCGCCG 59.150 52.381 0.00 0.00 40.83 6.46
5192 5602 1.254570 CTAGTCAAATTACGTCGCCGC 59.745 52.381 0.00 0.00 37.70 6.53
5193 5603 0.389426 AGTCAAATTACGTCGCCGCT 60.389 50.000 0.00 0.00 37.70 5.52
5194 5604 0.441145 GTCAAATTACGTCGCCGCTT 59.559 50.000 0.00 0.00 37.70 4.68
5195 5605 0.717224 TCAAATTACGTCGCCGCTTC 59.283 50.000 0.00 0.00 37.70 3.86
5196 5606 0.583083 CAAATTACGTCGCCGCTTCG 60.583 55.000 0.00 3.22 37.70 3.79
5197 5607 1.010419 AAATTACGTCGCCGCTTCGT 61.010 50.000 12.69 12.69 40.78 3.85
5198 5608 1.010419 AATTACGTCGCCGCTTCGTT 61.010 50.000 13.18 0.00 38.69 3.85
5199 5609 1.680105 ATTACGTCGCCGCTTCGTTG 61.680 55.000 13.18 0.00 38.69 4.10
5200 5610 2.730006 TTACGTCGCCGCTTCGTTGA 62.730 55.000 13.18 3.21 38.69 3.18
5201 5611 2.531927 TACGTCGCCGCTTCGTTGAT 62.532 55.000 13.18 0.00 38.69 2.57
5202 5612 2.695646 GTCGCCGCTTCGTTGATC 59.304 61.111 0.00 0.00 0.00 2.92
5203 5613 1.805945 GTCGCCGCTTCGTTGATCT 60.806 57.895 0.00 0.00 0.00 2.75
5204 5614 1.080093 TCGCCGCTTCGTTGATCTT 60.080 52.632 0.00 0.00 0.00 2.40
5205 5615 1.076533 TCGCCGCTTCGTTGATCTTC 61.077 55.000 0.00 0.00 0.00 2.87
5206 5616 1.345176 GCCGCTTCGTTGATCTTCG 59.655 57.895 0.00 0.00 0.00 3.79
5207 5617 1.345176 CCGCTTCGTTGATCTTCGC 59.655 57.895 0.00 0.00 0.00 4.70
5208 5618 1.345176 CGCTTCGTTGATCTTCGCC 59.655 57.895 0.00 0.00 0.00 5.54
5209 5619 1.351430 CGCTTCGTTGATCTTCGCCA 61.351 55.000 0.00 0.00 0.00 5.69
5210 5620 0.796312 GCTTCGTTGATCTTCGCCAA 59.204 50.000 0.00 0.00 0.00 4.52
5211 5621 1.201965 GCTTCGTTGATCTTCGCCAAG 60.202 52.381 0.00 1.61 0.00 3.61
5212 5622 2.337583 CTTCGTTGATCTTCGCCAAGA 58.662 47.619 0.00 0.00 43.06 3.02
5213 5623 1.710013 TCGTTGATCTTCGCCAAGAC 58.290 50.000 0.00 0.00 41.64 3.01
5214 5624 1.000394 TCGTTGATCTTCGCCAAGACA 60.000 47.619 0.00 0.00 41.64 3.41
5215 5625 1.391485 CGTTGATCTTCGCCAAGACAG 59.609 52.381 0.00 0.00 41.64 3.51
5216 5626 1.129437 GTTGATCTTCGCCAAGACAGC 59.871 52.381 0.00 0.00 41.64 4.40
5217 5627 0.610174 TGATCTTCGCCAAGACAGCT 59.390 50.000 0.00 0.00 41.64 4.24
5218 5628 1.002430 TGATCTTCGCCAAGACAGCTT 59.998 47.619 0.00 0.00 41.64 3.74
5219 5629 1.663135 GATCTTCGCCAAGACAGCTTC 59.337 52.381 0.00 0.00 41.64 3.86
5220 5630 0.681733 TCTTCGCCAAGACAGCTTCT 59.318 50.000 0.00 0.00 33.38 2.85
5221 5631 1.070758 TCTTCGCCAAGACAGCTTCTT 59.929 47.619 5.61 5.61 46.29 2.52
5222 5632 1.876156 CTTCGCCAAGACAGCTTCTTT 59.124 47.619 8.01 0.00 42.37 2.52
5223 5633 1.967319 TCGCCAAGACAGCTTCTTTT 58.033 45.000 8.01 0.00 42.37 2.27
5224 5634 2.297701 TCGCCAAGACAGCTTCTTTTT 58.702 42.857 8.01 0.00 42.37 1.94
5256 5666 1.275066 GCGCTAGCATCAAAGCTCG 59.725 57.895 16.45 0.00 45.26 5.03
5257 5667 1.275066 CGCTAGCATCAAAGCTCGC 59.725 57.895 16.45 2.78 46.32 5.03
5258 5668 1.275066 GCTAGCATCAAAGCTCGCG 59.725 57.895 10.63 0.00 45.26 5.87
5259 5669 1.148157 GCTAGCATCAAAGCTCGCGA 61.148 55.000 9.26 9.26 45.26 5.87
5260 5670 0.574454 CTAGCATCAAAGCTCGCGAC 59.426 55.000 3.71 2.10 45.26 5.19
5261 5671 1.139816 TAGCATCAAAGCTCGCGACG 61.140 55.000 3.71 2.50 45.26 5.12
5262 5672 2.697425 CATCAAAGCTCGCGACGG 59.303 61.111 3.71 0.00 0.00 4.79
5263 5673 1.805539 CATCAAAGCTCGCGACGGA 60.806 57.895 3.71 4.21 0.00 4.69
5264 5674 1.141881 ATCAAAGCTCGCGACGGAT 59.858 52.632 3.71 6.27 0.00 4.18
5265 5675 1.148157 ATCAAAGCTCGCGACGGATG 61.148 55.000 3.71 2.52 0.00 3.51
5266 5676 2.094659 CAAAGCTCGCGACGGATGT 61.095 57.895 3.71 0.00 0.00 3.06
5267 5677 1.805945 AAAGCTCGCGACGGATGTC 60.806 57.895 3.71 0.00 41.91 3.06
5282 5692 2.890474 GTCGTGGGCGGCATGTAG 60.890 66.667 12.47 0.00 43.09 2.74
5283 5693 3.387091 TCGTGGGCGGCATGTAGT 61.387 61.111 12.47 0.00 38.89 2.73
5284 5694 2.053277 TCGTGGGCGGCATGTAGTA 61.053 57.895 12.47 0.00 38.89 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 1.177401 GGTCCGTACGTCCTTACCTT 58.823 55.000 15.21 0.00 0.00 3.50
214 215 0.678048 GGTGCAGGGAGAATGTGGTC 60.678 60.000 0.00 0.00 0.00 4.02
248 249 7.094762 GCAAGTTAGGCTTACACTGAAATTACT 60.095 37.037 6.41 0.00 35.27 2.24
255 256 5.677319 ATAGCAAGTTAGGCTTACACTGA 57.323 39.130 6.41 0.00 42.62 3.41
365 366 8.408601 GTTCATGATTCCTGCAGTAATTATTGT 58.591 33.333 13.81 0.00 0.00 2.71
530 534 0.700564 TCCAAGGAAATCAGCTGGCT 59.299 50.000 15.13 0.00 0.00 4.75
554 558 1.588932 CTTTAGGCGATCGCTGCGA 60.589 57.895 36.25 28.01 41.13 5.10
676 680 5.397899 CCAGATTTCATAGCCCACCTAAAGA 60.398 44.000 0.00 0.00 0.00 2.52
874 878 4.426313 GCGGGTTCTGGAAGGGGG 62.426 72.222 0.00 0.00 0.00 5.40
879 883 3.327404 GGGAGGCGGGTTCTGGAA 61.327 66.667 0.00 0.00 0.00 3.53
883 887 2.685380 CAGAGGGAGGCGGGTTCT 60.685 66.667 0.00 0.00 0.00 3.01
884 888 2.683933 TCAGAGGGAGGCGGGTTC 60.684 66.667 0.00 0.00 0.00 3.62
885 889 3.003763 GTCAGAGGGAGGCGGGTT 61.004 66.667 0.00 0.00 0.00 4.11
893 911 2.637640 GGGGGAGAGGTCAGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
894 912 2.041405 GGGGGAGAGGTCAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
989 1009 4.809496 CCTCCATGCTTGGCCGCT 62.809 66.667 13.75 0.00 43.29 5.52
1316 1339 2.168496 GGGGAGTTAAAAGAGTTGGGC 58.832 52.381 0.00 0.00 0.00 5.36
1325 1348 1.047002 TCGTGTCGGGGGAGTTAAAA 58.953 50.000 0.00 0.00 0.00 1.52
1326 1349 0.318120 GTCGTGTCGGGGGAGTTAAA 59.682 55.000 0.00 0.00 0.00 1.52
1343 1366 4.324991 GGGTGGGTGGGTGTCGTC 62.325 72.222 0.00 0.00 0.00 4.20
1372 1395 0.104855 CAGATCAAATCGAGCGGGGA 59.895 55.000 0.00 0.00 34.30 4.81
1374 1397 0.531532 AGCAGATCAAATCGAGCGGG 60.532 55.000 0.00 0.00 39.22 6.13
1448 1477 0.248661 CAGCATCTACCGACTGACCG 60.249 60.000 0.00 0.00 31.67 4.79
1477 1509 3.005261 CCCACGAATATCTGGAGTCTCTG 59.995 52.174 0.00 0.00 0.00 3.35
1550 1666 1.450134 TAGCTGCGGCCATGAACTG 60.450 57.895 15.55 0.00 39.73 3.16
1564 1680 2.242196 AGAGAGAGAAGAGGCAGTAGCT 59.758 50.000 0.00 0.00 41.70 3.32
1579 1696 7.792364 TTCAGAGGGTAAACAATTAGAGAGA 57.208 36.000 0.00 0.00 0.00 3.10
1580 1697 9.103861 GAATTCAGAGGGTAAACAATTAGAGAG 57.896 37.037 0.00 0.00 0.00 3.20
1633 1750 1.847890 AAATGCGTTTGTCCGGACCG 61.848 55.000 31.19 26.37 0.00 4.79
1665 1782 7.862675 AGGTATTAATCCTGCAGTAGAAAAGT 58.137 34.615 13.81 0.00 33.62 2.66
1747 1866 4.327357 CAGTGAACCTACTATGCAAGAACG 59.673 45.833 0.00 0.00 0.00 3.95
1784 1907 4.536489 AGCTCCTAGTTGGATACTTGGTTT 59.464 41.667 0.00 0.00 46.20 3.27
1809 1936 5.578336 TCATTTGCTCGTCTGTCAAATCTAG 59.422 40.000 0.00 0.00 38.07 2.43
1830 1957 4.657504 TCTTCACAGCCATCCTATCTTCAT 59.342 41.667 0.00 0.00 0.00 2.57
1881 2008 7.487822 AGAGAAAGTTATGGATTCAGACAGA 57.512 36.000 0.00 0.00 0.00 3.41
1890 2017 4.591321 TGGCCAAGAGAAAGTTATGGAT 57.409 40.909 0.61 0.00 32.82 3.41
1923 2057 6.048732 TCACAAGTATGGTCAATCTAGCAA 57.951 37.500 0.00 0.00 0.00 3.91
1925 2059 8.144478 TCTAATCACAAGTATGGTCAATCTAGC 58.856 37.037 0.00 0.00 0.00 3.42
1971 2155 2.430332 ACAAAGCAAGCAACAGCCTAAA 59.570 40.909 0.00 0.00 0.00 1.85
2004 2189 5.517322 ACCTTACAGTCTATCGGATGTTC 57.483 43.478 0.00 0.00 0.00 3.18
2013 2198 5.720041 TGGCTCAAGTAACCTTACAGTCTAT 59.280 40.000 0.00 0.00 36.12 1.98
2018 2203 4.273148 AGTGGCTCAAGTAACCTTACAG 57.727 45.455 0.00 0.00 36.12 2.74
2021 2206 5.937111 AGAAAAGTGGCTCAAGTAACCTTA 58.063 37.500 0.00 0.00 0.00 2.69
2082 2267 8.356657 CACCAAATAATTGACCACTGACTTTTA 58.643 33.333 0.00 0.00 38.94 1.52
2083 2268 7.147742 ACACCAAATAATTGACCACTGACTTTT 60.148 33.333 0.00 0.00 38.94 2.27
2122 2307 3.182967 CTGTCCTTGTCTAAGACGCATC 58.817 50.000 0.00 0.00 35.92 3.91
2130 2315 3.042682 TGTCCAACCTGTCCTTGTCTAA 58.957 45.455 0.00 0.00 0.00 2.10
2181 2367 0.896226 AGTACCAGAACTCTTCCGCC 59.104 55.000 0.00 0.00 0.00 6.13
2249 2435 4.682860 TCGACGGTGTTAAGAAAAGATGAC 59.317 41.667 0.00 0.00 0.00 3.06
2365 2556 1.087501 GAGCACTTCCGCTAAAAGGG 58.912 55.000 0.00 0.00 44.01 3.95
2371 2562 0.815734 GTACCAGAGCACTTCCGCTA 59.184 55.000 0.00 0.00 44.01 4.26
2380 2571 3.118038 ACAAAGTCCAAAGTACCAGAGCA 60.118 43.478 0.00 0.00 0.00 4.26
2404 2595 2.196595 ACTGCAGCTGTTATCCCCTTA 58.803 47.619 15.27 0.00 0.00 2.69
2405 2596 0.995024 ACTGCAGCTGTTATCCCCTT 59.005 50.000 15.27 0.00 0.00 3.95
2408 2599 3.313526 CACATAACTGCAGCTGTTATCCC 59.686 47.826 26.57 0.00 36.72 3.85
2432 2623 4.505313 AGAATAAGACGATATGCAGCGA 57.495 40.909 12.47 0.00 36.93 4.93
2433 2624 5.629435 TGTTAGAATAAGACGATATGCAGCG 59.371 40.000 0.00 0.00 40.09 5.18
2438 2629 6.362551 CGGTGGTGTTAGAATAAGACGATATG 59.637 42.308 0.00 0.00 0.00 1.78
2439 2630 6.040166 ACGGTGGTGTTAGAATAAGACGATAT 59.960 38.462 0.00 0.00 0.00 1.63
2440 2631 5.357878 ACGGTGGTGTTAGAATAAGACGATA 59.642 40.000 0.00 0.00 0.00 2.92
2441 2632 4.159135 ACGGTGGTGTTAGAATAAGACGAT 59.841 41.667 0.00 0.00 0.00 3.73
2442 2633 3.507233 ACGGTGGTGTTAGAATAAGACGA 59.493 43.478 0.00 0.00 0.00 4.20
2443 2634 3.611113 CACGGTGGTGTTAGAATAAGACG 59.389 47.826 0.00 0.00 39.38 4.18
2444 2635 3.370061 GCACGGTGGTGTTAGAATAAGAC 59.630 47.826 10.60 0.00 46.13 3.01
2445 2636 3.592059 GCACGGTGGTGTTAGAATAAGA 58.408 45.455 10.60 0.00 46.13 2.10
2446 2637 2.676342 GGCACGGTGGTGTTAGAATAAG 59.324 50.000 10.60 0.00 46.13 1.73
2447 2638 2.303600 AGGCACGGTGGTGTTAGAATAA 59.696 45.455 10.60 0.00 46.13 1.40
2449 2640 0.690762 AGGCACGGTGGTGTTAGAAT 59.309 50.000 10.60 0.00 46.13 2.40
2471 2663 3.428534 CCACGCTCCATTTTAAAAGCAAC 59.571 43.478 6.79 0.00 34.39 4.17
2480 2672 1.678970 GAGGCCCACGCTCCATTTT 60.679 57.895 0.00 0.00 34.44 1.82
2493 2685 6.584185 TTTGTAGATTTAAAACCAGAGGCC 57.416 37.500 0.00 0.00 0.00 5.19
2573 2767 9.236691 GTCACGAAATGATTAGTAACCGTATAA 57.763 33.333 0.00 0.00 40.28 0.98
2579 2773 6.963049 ACAGTCACGAAATGATTAGTAACC 57.037 37.500 0.00 0.00 40.28 2.85
2619 2816 5.413833 AGACCAAAATGATGTAAGTCAGCTG 59.586 40.000 7.63 7.63 33.14 4.24
2633 2830 7.940850 TCTTTACAGAAAAGGAGACCAAAATG 58.059 34.615 0.00 0.00 44.10 2.32
2763 2966 3.117701 TGAGCTGCACTCTACTCTCCTAT 60.118 47.826 14.60 0.00 46.41 2.57
2862 3065 7.070571 TGGAAAAGGTATCTTGGTTGAATGTTT 59.929 33.333 0.00 0.00 32.75 2.83
2863 3066 6.553100 TGGAAAAGGTATCTTGGTTGAATGTT 59.447 34.615 0.00 0.00 32.75 2.71
2870 3073 7.797121 ATCAAATGGAAAAGGTATCTTGGTT 57.203 32.000 0.00 0.00 32.75 3.67
2922 3126 3.006247 GGACAGGACAAGCTTCAAGATC 58.994 50.000 0.00 0.00 0.00 2.75
2928 3132 1.004440 AGCGGACAGGACAAGCTTC 60.004 57.895 0.00 0.00 34.05 3.86
2934 3138 1.621317 TGTTAATGAGCGGACAGGACA 59.379 47.619 0.00 0.00 0.00 4.02
2937 3141 2.905075 TCATGTTAATGAGCGGACAGG 58.095 47.619 0.00 0.00 37.91 4.00
2943 3147 7.576236 CCCTAAAGTAATCATGTTAATGAGCG 58.424 38.462 0.00 0.00 45.88 5.03
2944 3148 7.013274 TGCCCTAAAGTAATCATGTTAATGAGC 59.987 37.037 0.00 0.00 45.88 4.26
3005 3210 4.402474 AGCAGCAAGTTAATTATTCCACCC 59.598 41.667 0.00 0.00 0.00 4.61
3023 3228 2.998316 ATCAAAGGACTAGGAGCAGC 57.002 50.000 0.00 0.00 0.00 5.25
3036 3241 6.818644 TGTAGCTACAGCCTTTCTTATCAAAG 59.181 38.462 22.67 0.00 43.38 2.77
3057 3262 5.106948 CGCAAGCTTAACATGGGATATGTAG 60.107 44.000 0.00 0.00 32.09 2.74
3059 3264 3.565482 CGCAAGCTTAACATGGGATATGT 59.435 43.478 0.00 0.00 32.09 2.29
3068 3273 6.458751 CCAAGTAATCATCGCAAGCTTAACAT 60.459 38.462 0.00 0.00 37.18 2.71
3078 3283 4.571984 CACTGAATCCAAGTAATCATCGCA 59.428 41.667 0.00 0.00 0.00 5.10
3112 3319 8.275040 AGGCTTACTTCCACTGTATCAATTAAT 58.725 33.333 0.00 0.00 0.00 1.40
3118 3325 4.081642 GTCAGGCTTACTTCCACTGTATCA 60.082 45.833 0.00 0.00 0.00 2.15
3150 3357 4.765273 TGCCAATGACTGATATTGTACGT 58.235 39.130 0.00 0.00 34.51 3.57
3226 3434 9.823647 CACCTACATATGTTTCTCTATCAAACT 57.176 33.333 14.77 0.00 35.19 2.66
3227 3435 9.817809 TCACCTACATATGTTTCTCTATCAAAC 57.182 33.333 14.77 0.00 34.79 2.93
3229 3437 9.987272 CATCACCTACATATGTTTCTCTATCAA 57.013 33.333 14.77 0.00 0.00 2.57
3230 3438 8.090831 GCATCACCTACATATGTTTCTCTATCA 58.909 37.037 14.77 0.00 0.00 2.15
3231 3439 8.090831 TGCATCACCTACATATGTTTCTCTATC 58.909 37.037 14.77 0.00 0.00 2.08
3232 3440 7.966812 TGCATCACCTACATATGTTTCTCTAT 58.033 34.615 14.77 0.00 0.00 1.98
3233 3441 7.360113 TGCATCACCTACATATGTTTCTCTA 57.640 36.000 14.77 0.00 0.00 2.43
3234 3442 6.239217 TGCATCACCTACATATGTTTCTCT 57.761 37.500 14.77 0.00 0.00 3.10
3235 3443 7.502120 AATGCATCACCTACATATGTTTCTC 57.498 36.000 14.77 0.00 0.00 2.87
3236 3444 7.013655 GGAAATGCATCACCTACATATGTTTCT 59.986 37.037 14.77 0.00 0.00 2.52
3237 3445 7.141363 GGAAATGCATCACCTACATATGTTTC 58.859 38.462 14.77 6.79 0.00 2.78
3238 3446 6.040842 GGGAAATGCATCACCTACATATGTTT 59.959 38.462 14.77 0.00 0.00 2.83
3239 3447 5.536161 GGGAAATGCATCACCTACATATGTT 59.464 40.000 14.77 0.00 0.00 2.71
3240 3448 5.072741 GGGAAATGCATCACCTACATATGT 58.927 41.667 13.93 13.93 0.00 2.29
3241 3449 4.460382 GGGGAAATGCATCACCTACATATG 59.540 45.833 17.59 0.00 39.96 1.78
3242 3450 4.666512 GGGGAAATGCATCACCTACATAT 58.333 43.478 17.59 0.00 39.96 1.78
3243 3451 4.098914 GGGGAAATGCATCACCTACATA 57.901 45.455 17.59 0.00 39.96 2.29
3244 3452 2.949447 GGGGAAATGCATCACCTACAT 58.051 47.619 17.59 0.00 39.96 2.29
3245 3453 2.435372 GGGGAAATGCATCACCTACA 57.565 50.000 17.59 0.00 39.96 2.74
3249 3457 2.689983 CTGTAAGGGGAAATGCATCACC 59.310 50.000 0.00 0.00 43.70 4.02
3250 3458 3.356290 ACTGTAAGGGGAAATGCATCAC 58.644 45.455 0.00 0.00 39.30 3.06
3318 3529 2.161855 TCACCTGGTGCATAAAAGCTG 58.838 47.619 22.02 0.00 32.98 4.24
3359 3570 7.897575 AGTAAATTTTAATCGCAAATTGGCA 57.102 28.000 5.49 0.00 34.68 4.92
3365 3576 9.535878 ACAAGGAAAGTAAATTTTAATCGCAAA 57.464 25.926 0.00 0.00 0.00 3.68
3393 3604 9.312904 TCCAATTGAAACAAATAGAGAGGAATT 57.687 29.630 7.12 0.00 0.00 2.17
3446 3658 5.290493 AGTTTGTGAGGACAAGTACATGA 57.710 39.130 4.87 0.00 43.03 3.07
3476 3692 8.883731 CGTGTTCTTGATAAGATGGTATTTCTT 58.116 33.333 0.00 0.00 37.38 2.52
3502 3718 3.019564 AGGCATGATAAAAGCTGGTCAC 58.980 45.455 0.00 0.00 0.00 3.67
3513 3729 8.644374 ACAAACTAAAAGGTAAGGCATGATAA 57.356 30.769 0.00 0.00 0.00 1.75
3516 3732 6.969993 AACAAACTAAAAGGTAAGGCATGA 57.030 33.333 0.00 0.00 0.00 3.07
3533 3749 8.616076 CCATCATTCTGGTTCTCTATAACAAAC 58.384 37.037 0.00 0.00 0.00 2.93
3535 3751 6.767902 GCCATCATTCTGGTTCTCTATAACAA 59.232 38.462 0.00 0.00 38.63 2.83
3536 3752 6.100279 AGCCATCATTCTGGTTCTCTATAACA 59.900 38.462 0.00 0.00 38.63 2.41
3537 3753 6.529220 AGCCATCATTCTGGTTCTCTATAAC 58.471 40.000 0.00 0.00 38.63 1.89
3539 3755 5.047731 CGAGCCATCATTCTGGTTCTCTATA 60.048 44.000 5.60 0.00 42.53 1.31
3540 3756 4.262377 CGAGCCATCATTCTGGTTCTCTAT 60.262 45.833 5.60 0.00 42.53 1.98
3541 3757 3.068732 CGAGCCATCATTCTGGTTCTCTA 59.931 47.826 5.60 0.00 42.53 2.43
3548 3923 4.887748 AGTATAACGAGCCATCATTCTGG 58.112 43.478 0.00 0.00 39.45 3.86
3563 3938 8.230486 CCAAACACAATGTCAGAAGAGTATAAC 58.770 37.037 0.00 0.00 0.00 1.89
3568 3943 4.336433 CACCAAACACAATGTCAGAAGAGT 59.664 41.667 0.00 0.00 0.00 3.24
3574 3949 2.286950 CCGTCACCAAACACAATGTCAG 60.287 50.000 0.00 0.00 0.00 3.51
3600 3975 6.075572 CGCAAAACTTTTAGTAGCTGAAACAC 60.076 38.462 0.00 0.00 0.00 3.32
3624 3999 7.537306 AGTTCAATTATCAAATCCAACGAAACG 59.463 33.333 0.00 0.00 0.00 3.60
3627 4002 9.226606 AGTAGTTCAATTATCAAATCCAACGAA 57.773 29.630 0.00 0.00 0.00 3.85
3669 4044 8.786826 TTTTACTATGTGGGTATCTTCAAGTG 57.213 34.615 0.00 0.00 0.00 3.16
3705 4080 7.872163 TCTGTATTTGATGTTTCACATTTGC 57.128 32.000 0.00 0.00 39.27 3.68
3718 4093 7.410174 TCCACCTGGTAATTTCTGTATTTGAT 58.590 34.615 0.00 0.00 36.34 2.57
3862 4237 6.723977 AGAAGAGAACATATACCTCTCCATCC 59.276 42.308 0.00 0.00 36.98 3.51
3989 4364 5.704888 CTCTCCATGAGTCGATGTATTACC 58.295 45.833 0.00 0.00 37.99 2.85
4017 4392 3.329929 AATTGGTACAGAGGGTTCGAC 57.670 47.619 0.00 0.00 42.39 4.20
4018 4393 4.360951 AAAATTGGTACAGAGGGTTCGA 57.639 40.909 0.00 0.00 42.39 3.71
4019 4394 6.753107 AATAAAATTGGTACAGAGGGTTCG 57.247 37.500 0.00 0.00 42.39 3.95
4026 4401 9.878667 TGATCGACTAAATAAAATTGGTACAGA 57.121 29.630 0.00 0.00 42.39 3.41
4047 4422 7.662604 TTCAATGAGTCCATAATGATGATCG 57.337 36.000 0.00 0.00 34.73 3.69
4061 4445 8.424274 AAAATGAAAGGTTGTTTCAATGAGTC 57.576 30.769 4.40 0.00 41.16 3.36
4080 4464 9.985730 ATTGCAAGAAAATGAGAAGTAAAATGA 57.014 25.926 4.94 0.00 0.00 2.57
4087 4471 9.468532 GAGTTTAATTGCAAGAAAATGAGAAGT 57.531 29.630 12.59 0.00 0.00 3.01
4089 4473 9.467258 CTGAGTTTAATTGCAAGAAAATGAGAA 57.533 29.630 14.20 0.86 0.00 2.87
4090 4474 7.596248 GCTGAGTTTAATTGCAAGAAAATGAGA 59.404 33.333 19.98 4.78 0.00 3.27
4108 4492 2.135933 GCAGTTACGAGTGCTGAGTTT 58.864 47.619 11.70 0.00 46.50 2.66
4182 4566 2.359040 CGCAACAGCGTCGTCGTTA 61.359 57.895 3.66 0.00 46.13 3.18
4236 4620 2.596338 AGGCCGAAACCAAACCGG 60.596 61.111 0.00 0.00 45.51 5.28
4271 4655 1.682323 GTTCCTCCTACGGGATCTCAC 59.318 57.143 0.00 0.00 41.36 3.51
4286 4670 2.568623 ATCTCAAAGTTGCCGTTCCT 57.431 45.000 0.00 0.00 0.00 3.36
4289 4673 4.278170 TGAATGAATCTCAAAGTTGCCGTT 59.722 37.500 0.00 0.00 0.00 4.44
4293 4677 4.801891 TGCTGAATGAATCTCAAAGTTGC 58.198 39.130 0.00 0.00 0.00 4.17
4296 4682 5.713389 TCCATTGCTGAATGAATCTCAAAGT 59.287 36.000 0.00 0.00 41.49 2.66
4312 4698 2.648059 GTTATGACCAGCTCCATTGCT 58.352 47.619 0.00 0.00 45.18 3.91
4349 4736 3.012518 CGAAGCATTTCCAACTCTCCAT 58.987 45.455 0.00 0.00 0.00 3.41
4383 4770 2.928801 TACAGGCTTCTTGCACAAGA 57.071 45.000 8.99 8.99 44.94 3.02
4458 4848 7.038302 TGTTCTTTTCCTTTCTCTAGCTGGATA 60.038 37.037 0.00 0.00 0.00 2.59
4573 4975 5.716228 TGGTGTTGCCTATTCAAAAGATCAT 59.284 36.000 0.00 0.00 38.35 2.45
4574 4976 5.048083 GTGGTGTTGCCTATTCAAAAGATCA 60.048 40.000 0.00 0.00 38.35 2.92
4684 5086 6.806739 GGTTTTACCAGATATCTTTGTTGTGC 59.193 38.462 1.33 0.00 38.42 4.57
4702 5105 9.194271 TGAACTTTGTGTAACTTTTGGTTTTAC 57.806 29.630 0.00 0.00 39.17 2.01
4814 5217 6.567602 ATGAGTTGCCCTAAGTTTCTAGAT 57.432 37.500 0.00 0.00 0.00 1.98
4832 5235 4.161565 TGATTTGAGGGTAAGCGTATGAGT 59.838 41.667 0.00 0.00 0.00 3.41
4836 5239 4.161565 TGTCTGATTTGAGGGTAAGCGTAT 59.838 41.667 0.00 0.00 0.00 3.06
4837 5240 3.512329 TGTCTGATTTGAGGGTAAGCGTA 59.488 43.478 0.00 0.00 0.00 4.42
4843 5246 1.405526 GCGCTGTCTGATTTGAGGGTA 60.406 52.381 0.00 0.00 0.00 3.69
4860 5263 1.806758 GTTGGATGGCATGTTGCGC 60.807 57.895 3.81 0.00 46.21 6.09
4865 5268 1.004628 TGCTACAGTTGGATGGCATGT 59.995 47.619 3.81 0.00 0.00 3.21
4867 5270 2.020694 GCTGCTACAGTTGGATGGCAT 61.021 52.381 0.00 0.00 33.43 4.40
4868 5271 0.677731 GCTGCTACAGTTGGATGGCA 60.678 55.000 0.00 0.00 33.43 4.92
4879 5282 2.566833 ACCAGACATTTGCTGCTACA 57.433 45.000 0.00 0.00 32.06 2.74
4880 5283 3.751175 TGTAACCAGACATTTGCTGCTAC 59.249 43.478 0.00 0.00 32.06 3.58
4881 5284 4.014569 TGTAACCAGACATTTGCTGCTA 57.985 40.909 0.00 0.00 32.06 3.49
4882 5285 2.862541 TGTAACCAGACATTTGCTGCT 58.137 42.857 0.00 0.00 32.06 4.24
4883 5286 3.855689 ATGTAACCAGACATTTGCTGC 57.144 42.857 0.00 0.00 36.64 5.25
5011 5421 7.898636 TCCAAGGTTGAATAGGGTTTAATTCAT 59.101 33.333 0.00 0.00 40.71 2.57
5029 5439 1.419762 GGGTGCCAAAAATCCAAGGTT 59.580 47.619 0.00 0.00 0.00 3.50
5031 5441 1.055040 TGGGTGCCAAAAATCCAAGG 58.945 50.000 0.00 0.00 0.00 3.61
5033 5443 1.202746 GCTTGGGTGCCAAAAATCCAA 60.203 47.619 0.00 0.00 43.44 3.53
5034 5444 0.396060 GCTTGGGTGCCAAAAATCCA 59.604 50.000 0.00 0.00 43.44 3.41
5035 5445 0.396060 TGCTTGGGTGCCAAAAATCC 59.604 50.000 0.00 0.00 43.44 3.01
5036 5446 1.511850 GTGCTTGGGTGCCAAAAATC 58.488 50.000 0.00 0.00 43.44 2.17
5037 5447 0.108396 GGTGCTTGGGTGCCAAAAAT 59.892 50.000 0.00 0.00 43.44 1.82
5038 5448 1.524482 GGTGCTTGGGTGCCAAAAA 59.476 52.632 0.00 0.00 43.44 1.94
5039 5449 2.790791 CGGTGCTTGGGTGCCAAAA 61.791 57.895 0.00 0.00 43.44 2.44
5040 5450 3.222855 CGGTGCTTGGGTGCCAAA 61.223 61.111 0.00 0.00 43.44 3.28
5053 5463 4.802051 CATGGGAGGCCACCGGTG 62.802 72.222 28.26 28.26 0.00 4.94
5056 5466 4.864334 GAGCATGGGAGGCCACCG 62.864 72.222 13.57 0.37 0.00 4.94
5057 5467 3.415087 AGAGCATGGGAGGCCACC 61.415 66.667 11.39 11.39 0.00 4.61
5058 5468 2.124403 CAGAGCATGGGAGGCCAC 60.124 66.667 5.01 0.00 0.00 5.01
5059 5469 4.119363 GCAGAGCATGGGAGGCCA 62.119 66.667 5.01 0.00 0.00 5.36
5060 5470 3.771110 GAGCAGAGCATGGGAGGCC 62.771 68.421 0.00 0.00 0.00 5.19
5061 5471 2.203181 GAGCAGAGCATGGGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
5062 5472 0.179051 GAAGAGCAGAGCATGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
5063 5473 0.179051 GGAAGAGCAGAGCATGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
5064 5474 0.619832 AGGAAGAGCAGAGCATGGGA 60.620 55.000 0.00 0.00 0.00 4.37
5065 5475 0.179051 GAGGAAGAGCAGAGCATGGG 60.179 60.000 0.00 0.00 0.00 4.00
5066 5476 0.530211 CGAGGAAGAGCAGAGCATGG 60.530 60.000 0.00 0.00 0.00 3.66
5067 5477 1.152989 GCGAGGAAGAGCAGAGCATG 61.153 60.000 0.00 0.00 0.00 4.06
5068 5478 1.143620 GCGAGGAAGAGCAGAGCAT 59.856 57.895 0.00 0.00 0.00 3.79
5069 5479 2.575993 GCGAGGAAGAGCAGAGCA 59.424 61.111 0.00 0.00 0.00 4.26
5070 5480 2.202864 GGCGAGGAAGAGCAGAGC 60.203 66.667 0.00 0.00 34.54 4.09
5071 5481 2.103934 CGGCGAGGAAGAGCAGAG 59.896 66.667 0.00 0.00 34.54 3.35
5072 5482 4.135153 GCGGCGAGGAAGAGCAGA 62.135 66.667 12.98 0.00 34.54 4.26
5145 5555 3.869272 GACATTGCCAGCTCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
5146 5556 0.815213 TATGACATTGCCAGCTCCGC 60.815 55.000 0.00 0.00 0.00 5.54
5147 5557 1.534163 CATATGACATTGCCAGCTCCG 59.466 52.381 0.00 0.00 0.00 4.63
5148 5558 2.292569 CACATATGACATTGCCAGCTCC 59.707 50.000 10.38 0.00 0.00 4.70
5149 5559 2.287427 GCACATATGACATTGCCAGCTC 60.287 50.000 10.38 0.00 0.00 4.09
5150 5560 1.679680 GCACATATGACATTGCCAGCT 59.320 47.619 10.38 0.00 0.00 4.24
5151 5561 2.129823 GCACATATGACATTGCCAGC 57.870 50.000 10.38 0.00 0.00 4.85
5155 5565 3.480470 ACTAGGGCACATATGACATTGC 58.520 45.455 10.38 8.59 34.30 3.56
5156 5566 4.707105 TGACTAGGGCACATATGACATTG 58.293 43.478 10.38 0.00 34.30 2.82
5157 5567 5.372343 TTGACTAGGGCACATATGACATT 57.628 39.130 10.38 0.00 34.30 2.71
5158 5568 5.372343 TTTGACTAGGGCACATATGACAT 57.628 39.130 10.38 0.00 34.30 3.06
5159 5569 4.835284 TTTGACTAGGGCACATATGACA 57.165 40.909 10.38 0.00 34.30 3.58
5160 5570 6.073765 CGTAATTTGACTAGGGCACATATGAC 60.074 42.308 10.38 0.58 0.00 3.06
5161 5571 5.989168 CGTAATTTGACTAGGGCACATATGA 59.011 40.000 10.38 0.00 0.00 2.15
5162 5572 5.758296 ACGTAATTTGACTAGGGCACATATG 59.242 40.000 0.00 0.00 0.00 1.78
5163 5573 5.925509 ACGTAATTTGACTAGGGCACATAT 58.074 37.500 0.00 0.00 0.00 1.78
5164 5574 5.347620 ACGTAATTTGACTAGGGCACATA 57.652 39.130 0.00 0.00 0.00 2.29
5165 5575 4.189231 GACGTAATTTGACTAGGGCACAT 58.811 43.478 0.00 0.00 0.00 3.21
5166 5576 3.592059 GACGTAATTTGACTAGGGCACA 58.408 45.455 0.00 0.00 0.00 4.57
5167 5577 2.601763 CGACGTAATTTGACTAGGGCAC 59.398 50.000 0.00 0.00 0.00 5.01
5168 5578 2.883574 CGACGTAATTTGACTAGGGCA 58.116 47.619 0.00 0.00 0.00 5.36
5169 5579 1.591619 GCGACGTAATTTGACTAGGGC 59.408 52.381 0.00 0.00 0.00 5.19
5170 5580 2.199236 GGCGACGTAATTTGACTAGGG 58.801 52.381 0.00 0.00 0.00 3.53
5185 5595 1.352156 AAGATCAACGAAGCGGCGAC 61.352 55.000 12.98 1.23 34.83 5.19
5186 5596 1.076533 GAAGATCAACGAAGCGGCGA 61.077 55.000 12.98 0.00 34.83 5.54
5187 5597 1.345176 GAAGATCAACGAAGCGGCG 59.655 57.895 0.51 0.51 37.29 6.46
5188 5598 1.345176 CGAAGATCAACGAAGCGGC 59.655 57.895 5.81 0.00 0.00 6.53
5189 5599 1.345176 GCGAAGATCAACGAAGCGG 59.655 57.895 14.02 0.00 0.00 5.52
5190 5600 1.345176 GGCGAAGATCAACGAAGCG 59.655 57.895 14.02 0.00 0.00 4.68
5191 5601 0.796312 TTGGCGAAGATCAACGAAGC 59.204 50.000 14.02 2.25 0.00 3.86
5192 5602 2.092838 GTCTTGGCGAAGATCAACGAAG 59.907 50.000 14.60 9.88 40.40 3.79
5193 5603 2.066262 GTCTTGGCGAAGATCAACGAA 58.934 47.619 14.60 1.99 40.40 3.85
5194 5604 1.000394 TGTCTTGGCGAAGATCAACGA 60.000 47.619 14.60 0.00 40.40 3.85
5195 5605 1.391485 CTGTCTTGGCGAAGATCAACG 59.609 52.381 14.60 1.02 40.40 4.10
5196 5606 1.129437 GCTGTCTTGGCGAAGATCAAC 59.871 52.381 14.60 6.58 40.40 3.18
5197 5607 1.002430 AGCTGTCTTGGCGAAGATCAA 59.998 47.619 14.60 3.27 40.40 2.57
5198 5608 0.610174 AGCTGTCTTGGCGAAGATCA 59.390 50.000 14.60 12.54 40.40 2.92
5199 5609 1.663135 GAAGCTGTCTTGGCGAAGATC 59.337 52.381 14.60 8.86 40.40 2.75
5200 5610 1.277557 AGAAGCTGTCTTGGCGAAGAT 59.722 47.619 14.60 0.00 40.40 2.40
5201 5611 0.681733 AGAAGCTGTCTTGGCGAAGA 59.318 50.000 7.12 7.12 35.75 2.87
5202 5612 1.517242 AAGAAGCTGTCTTGGCGAAG 58.483 50.000 1.39 1.39 45.29 3.79
5203 5613 1.967319 AAAGAAGCTGTCTTGGCGAA 58.033 45.000 10.60 0.00 46.36 4.70
5204 5614 1.967319 AAAAGAAGCTGTCTTGGCGA 58.033 45.000 10.60 0.00 46.36 5.54
5205 5615 2.781945 AAAAAGAAGCTGTCTTGGCG 57.218 45.000 10.60 0.00 46.36 5.69
5221 5631 3.436055 CATCCCGCGGGCGAAAAA 61.436 61.111 39.89 22.17 42.83 1.94
5238 5648 1.275066 CGAGCTTTGATGCTAGCGC 59.725 57.895 10.77 0.00 44.17 5.92
5241 5651 0.574454 GTCGCGAGCTTTGATGCTAG 59.426 55.000 10.24 0.00 44.17 3.42
5242 5652 1.139816 CGTCGCGAGCTTTGATGCTA 61.140 55.000 10.24 0.00 44.17 3.49
5244 5654 2.020559 CGTCGCGAGCTTTGATGC 59.979 61.111 10.24 0.00 0.00 3.91
5245 5655 1.148157 ATCCGTCGCGAGCTTTGATG 61.148 55.000 10.24 0.00 0.00 3.07
5246 5656 1.141881 ATCCGTCGCGAGCTTTGAT 59.858 52.632 10.24 4.43 0.00 2.57
5247 5657 1.805539 CATCCGTCGCGAGCTTTGA 60.806 57.895 10.24 1.83 0.00 2.69
5248 5658 2.014093 GACATCCGTCGCGAGCTTTG 62.014 60.000 10.24 8.33 31.07 2.77
5249 5659 1.805945 GACATCCGTCGCGAGCTTT 60.806 57.895 10.24 0.00 31.07 3.51
5250 5660 2.202623 GACATCCGTCGCGAGCTT 60.203 61.111 10.24 0.00 31.07 3.74
5261 5671 4.856801 ATGCCGCCCACGACATCC 62.857 66.667 0.00 0.00 37.96 3.51
5262 5672 2.916502 TACATGCCGCCCACGACATC 62.917 60.000 0.00 0.00 40.66 3.06
5263 5673 2.923426 CTACATGCCGCCCACGACAT 62.923 60.000 0.00 0.00 43.64 3.06
5264 5674 3.657448 CTACATGCCGCCCACGACA 62.657 63.158 0.00 0.00 43.93 4.35
5265 5675 2.287457 TACTACATGCCGCCCACGAC 62.287 60.000 0.00 0.00 43.93 4.34
5266 5676 2.053277 TACTACATGCCGCCCACGA 61.053 57.895 0.00 0.00 43.93 4.35
5267 5677 2.497293 TACTACATGCCGCCCACG 59.503 61.111 0.00 0.00 39.67 4.94



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.