AutoCloner

Multiple sequence alignment - TraesCS5A01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G296000	chr5A	100.000	2330	0	0	1	2330	504577528	504575199	0.000000e+00	4303.0
1	TraesCS5A01G296000	chr5A	93.359	512	28	5	1	509	504622036	504621528	0.000000e+00	752.0
2	TraesCS5A01G296000	chr5A	91.667	144	10	2	349	491	435702673	435702531	5.080000e-47	198.0
3	TraesCS5A01G296000	chr2D	98.297	1468	16	2	872	2330	549021729	549020262	0.000000e+00	2564.0
4	TraesCS5A01G296000	chr2D	89.199	537	25	11	1	533	549023145	549022638	7.020000e-180	640.0
5	TraesCS5A01G296000	chr2D	82.222	585	81	17	1013	1579	548751156	548750577	1.250000e-132	483.0
6	TraesCS5A01G296000	chr2D	81.993	572	65	19	1748	2291	548750557	548749996	3.530000e-123	451.0
7	TraesCS5A01G296000	chr2D	82.839	472	39	13	1856	2288	550670416	550670884	3.630000e-103	385.0
8	TraesCS5A01G296000	chr2D	82.700	474	42	11	1856	2291	551143350	551142879	3.630000e-103	385.0
9	TraesCS5A01G296000	chr2D	82.526	475	42	13	1856	2291	549732405	549731933	1.690000e-101	379.0
10	TraesCS5A01G296000	chr2D	82.526	475	41	13	1856	2291	549921337	549920866	1.690000e-101	379.0
11	TraesCS5A01G296000	chr2D	82.316	475	43	13	1856	2291	550230939	550230467	7.860000e-100	374.0
12	TraesCS5A01G296000	chr2D	86.709	316	39	2	1016	1331	548744824	548744512	4.770000e-92	348.0
13	TraesCS5A01G296000	chr2D	87.821	312	5	6	527	824	549022013	549021721	3.710000e-88	335.0
14	TraesCS5A01G296000	chr2D	84.270	178	23	4	353	526	450941130	450940954	3.980000e-38	169.0
15	TraesCS5A01G296000	chr2A	83.774	567	71	14	1026	1576	691765305	691764744	3.430000e-143	518.0
16	TraesCS5A01G296000	chr2A	82.301	565	73	18	1748	2291	691764291	691763733	4.530000e-127	464.0
17	TraesCS5A01G296000	chr2A	87.975	316	35	2	1016	1331	691757961	691757649	1.020000e-98	370.0
18	TraesCS5A01G296000	chr2A	97.826	46	1	0	825	870	618954824	618954779	1.920000e-11	80.5
19	TraesCS5A01G296000	chr2B	82.423	586	75	16	1013	1579	655843114	655842538	9.680000e-134	486.0
20	TraesCS5A01G296000	chr2B	82.911	474	41	12	1856	2291	655991122	655990651	7.810000e-105	390.0
21	TraesCS5A01G296000	chr2B	82.452	473	45	11	1856	2291	656230778	656230307	1.690000e-101	379.0
22	TraesCS5A01G296000	chr2B	82.069	435	58	10	1748	2167	655842518	655842089	1.020000e-93	353.0
23	TraesCS5A01G296000	chr2B	84.814	349	44	5	992	1331	655839255	655838907	2.220000e-90	342.0
24	TraesCS5A01G296000	chr2B	91.667	168	13	1	1587	1753	797329803	797329970	5.010000e-57	231.0
25	TraesCS5A01G296000	chr6D	94.969	159	8	0	1589	1747	90135048	90134890	1.380000e-62	250.0
26	TraesCS5A01G296000	chr6A	93.711	159	10	0	1589	1747	108924036	108924194	2.990000e-59	239.0
27	TraesCS5A01G296000	chr6A	93.082	159	11	0	1589	1747	442395558	442395716	1.390000e-57	233.0
28	TraesCS5A01G296000	chr4D	93.671	158	10	0	1591	1748	75266904	75266747	1.080000e-58	237.0
29	TraesCS5A01G296000	chr4D	93.082	159	11	0	1589	1747	21147890	21147732	1.390000e-57	233.0
30	TraesCS5A01G296000	chr4D	86.932	176	20	3	348	520	38342154	38341979	6.570000e-46	195.0
31	TraesCS5A01G296000	chr3D	90.751	173	16	0	1590	1762	598889736	598889908	5.010000e-57	231.0
32	TraesCS5A01G296000	chr3D	92.073	164	12	1	1589	1752	187836311	187836473	1.800000e-56	230.0
33	TraesCS5A01G296000	chr3D	90.071	141	14	0	348	488	566071085	566071225	1.420000e-42	183.0
34	TraesCS5A01G296000	chr1B	89.333	150	16	0	339	488	180522845	180522994	3.060000e-44	189.0
35	TraesCS5A01G296000	chr1A	86.228	167	20	3	342	507	258005655	258005819	6.620000e-41	178.0
36	TraesCS5A01G296000	chr3A	80.184	217	40	3	276	491	172747797	172748011	2.400000e-35	159.0
37	TraesCS5A01G296000	chr3A	88.333	60	3	3	527	582	48370857	48370916	4.150000e-08	69.4
38	TraesCS5A01G296000	chr3A	100.000	35	0	0	548	582	48450318	48450352	5.370000e-07	65.8
39	TraesCS5A01G296000	chr7B	100.000	47	0	0	824	870	118128089	118128043	1.150000e-13	87.9
40	TraesCS5A01G296000	chrUn	100.000	46	0	0	825	870	23656640	23656685	4.130000e-13	86.1
41	TraesCS5A01G296000	chr7A	97.826	46	1	0	825	870	109824934	109824889	1.920000e-11	80.5
42	TraesCS5A01G296000	chr6B	97.826	46	1	0	825	870	26523427	26523472	1.920000e-11	80.5
43	TraesCS5A01G296000	chr7D	100.000	30	0	0	276	305	45813995	45813966	3.230000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G296000	chr5A	504575199	504577528	2329	True	4303.000000	4303	100.000000	1	2330	1	chr5A.!!$R2	2329
1	TraesCS5A01G296000	chr5A	504621528	504622036	508	True	752.000000	752	93.359000	1	509	1	chr5A.!!$R3	508
2	TraesCS5A01G296000	chr2D	549020262	549023145	2883	True	1179.666667	2564	91.772333	1	2330	3	chr2D.!!$R8	2329
3	TraesCS5A01G296000	chr2D	548749996	548751156	1160	True	467.000000	483	82.107500	1013	2291	2	chr2D.!!$R7	1278
4	TraesCS5A01G296000	chr2A	691763733	691765305	1572	True	491.000000	518	83.037500	1026	2291	2	chr2A.!!$R3	1265
5	TraesCS5A01G296000	chr2B	655838907	655843114	4207	True	393.666667	486	83.102000	992	2167	3	chr2B.!!$R3	1175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
332	335	0.03831	TCTCGCTCTCCTCAGGTTGA	59.962	55.0	0.0	0.0	0.0	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1642	2425	5.645497	AGTGTAGATTCACTCATTTTGCTCC	59.355	40.0	0.0	0.0	44.07	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
236	239	2.864343	CGATAAACCTTCGTAAGCCCAG	59.136	50.000	0.00	0.00	37.18	4.45
260	263	4.675565	GCTGAAACCTTCGTAAAAAGCTTC	59.324	41.667	0.00	0.00	0.00	3.86
291	294	6.806249	GTCAAATGGCGAAATCACTAATTGAA	59.194	34.615	0.00	0.00	37.92	2.69
303	306	9.660180	AAATCACTAATTGAAGAGTAGTCCTTC	57.340	33.333	0.00	0.00	37.06	3.46
305	308	6.037098	CACTAATTGAAGAGTAGTCCTTCCG	58.963	44.000	0.00	0.00	37.06	4.30
332	335	0.038310	TCTCGCTCTCCTCAGGTTGA	59.962	55.000	0.00	0.00	0.00	3.18
435	439	6.669125	ATCTTGAACCATTTTCACCATTGA	57.331	33.333	0.00	0.00	0.00	2.57
461	465	2.400399	TCGCGTCGAGATTTTCAAAGT	58.600	42.857	5.77	0.00	0.00	2.66
488	492	6.947733	AGATTCCATGTTGATAGGTTTTGACA	59.052	34.615	0.00	0.00	0.00	3.58
565	1203	4.150627	GCATCTTTTCCTTTTTCGAAAGCC	59.849	41.667	10.98	0.00	31.22	4.35
594	1241	3.843240	GCACGCTCGCGGAAGAAG	61.843	66.667	16.18	0.00	44.69	2.85
720	1370	1.623359	CTCAGTAACTCGCTCTGTGC	58.377	55.000	0.00	0.00	38.57	4.57
729	1379	3.150895	GCTCTGTGCGTTCGACAG	58.849	61.111	13.94	13.94	41.96	3.51
730	1380	3.004734	GCTCTGTGCGTTCGACAGC	62.005	63.158	14.73	4.49	40.64	4.40
731	1381	1.661509	CTCTGTGCGTTCGACAGCA	60.662	57.895	9.62	9.62	40.64	4.41
732	1382	1.006220	TCTGTGCGTTCGACAGCAT	60.006	52.632	15.72	0.00	45.69	3.79
733	1383	0.599991	TCTGTGCGTTCGACAGCATT	60.600	50.000	15.72	0.00	45.69	3.56
734	1384	0.235665	CTGTGCGTTCGACAGCATTT	59.764	50.000	15.72	0.00	45.69	2.32
735	1385	0.660488	TGTGCGTTCGACAGCATTTT	59.340	45.000	15.72	0.00	45.69	1.82
736	1386	1.044725	GTGCGTTCGACAGCATTTTG	58.955	50.000	15.72	0.00	45.69	2.44
737	1387	0.940833	TGCGTTCGACAGCATTTTGA	59.059	45.000	9.62	0.00	38.59	2.69
824	1474	3.963383	CCTGGTCGGCATATGTAAAAC	57.037	47.619	4.29	0.00	0.00	2.43
825	1475	3.275143	CCTGGTCGGCATATGTAAAACA	58.725	45.455	4.29	0.00	0.00	2.83
826	1476	3.692101	CCTGGTCGGCATATGTAAAACAA	59.308	43.478	4.29	0.00	0.00	2.83
827	1477	4.156922	CCTGGTCGGCATATGTAAAACAAA	59.843	41.667	4.29	0.00	0.00	2.83
828	1478	5.336055	CCTGGTCGGCATATGTAAAACAAAA	60.336	40.000	4.29	0.00	0.00	2.44
829	1479	6.274157	TGGTCGGCATATGTAAAACAAAAT	57.726	33.333	4.29	0.00	0.00	1.82
830	1480	6.692486	TGGTCGGCATATGTAAAACAAAATT	58.308	32.000	4.29	0.00	0.00	1.82
831	1481	6.587990	TGGTCGGCATATGTAAAACAAAATTG	59.412	34.615	4.29	0.00	0.00	2.32
832	1482	6.454981	GGTCGGCATATGTAAAACAAAATTGC	60.455	38.462	4.29	0.00	0.00	3.56
833	1483	6.310224	GTCGGCATATGTAAAACAAAATTGCT	59.690	34.615	4.29	0.00	0.00	3.91
834	1484	7.486551	GTCGGCATATGTAAAACAAAATTGCTA	59.513	33.333	4.29	0.00	0.00	3.49
835	1485	7.486551	TCGGCATATGTAAAACAAAATTGCTAC	59.513	33.333	4.29	0.00	0.00	3.58
836	1486	7.274468	CGGCATATGTAAAACAAAATTGCTACA	59.726	33.333	4.29	0.42	0.00	2.74
837	1487	8.379902	GGCATATGTAAAACAAAATTGCTACAC	58.620	33.333	4.29	0.00	29.57	2.90
838	1488	8.379902	GCATATGTAAAACAAAATTGCTACACC	58.620	33.333	4.29	0.00	29.57	4.16
839	1489	9.638239	CATATGTAAAACAAAATTGCTACACCT	57.362	29.630	0.00	0.00	29.57	4.00
842	1492	7.133513	TGTAAAACAAAATTGCTACACCTACG	58.866	34.615	0.00	0.00	0.00	3.51
843	1493	6.380095	AAAACAAAATTGCTACACCTACGA	57.620	33.333	0.00	0.00	0.00	3.43
844	1494	6.380095	AAACAAAATTGCTACACCTACGAA	57.620	33.333	0.00	0.00	0.00	3.85
845	1495	5.352643	ACAAAATTGCTACACCTACGAAC	57.647	39.130	0.00	0.00	0.00	3.95
846	1496	4.817464	ACAAAATTGCTACACCTACGAACA	59.183	37.500	0.00	0.00	0.00	3.18
847	1497	5.049680	ACAAAATTGCTACACCTACGAACAG	60.050	40.000	0.00	0.00	0.00	3.16
848	1498	2.074547	TTGCTACACCTACGAACAGC	57.925	50.000	0.00	0.00	0.00	4.40
849	1499	0.245539	TGCTACACCTACGAACAGCC	59.754	55.000	0.00	0.00	0.00	4.85
850	1500	0.459759	GCTACACCTACGAACAGCCC	60.460	60.000	0.00	0.00	0.00	5.19
851	1501	1.183549	CTACACCTACGAACAGCCCT	58.816	55.000	0.00	0.00	0.00	5.19
852	1502	2.372264	CTACACCTACGAACAGCCCTA	58.628	52.381	0.00	0.00	0.00	3.53
853	1503	0.893447	ACACCTACGAACAGCCCTAC	59.107	55.000	0.00	0.00	0.00	3.18
854	1504	0.179145	CACCTACGAACAGCCCTACG	60.179	60.000	0.00	0.00	0.00	3.51
855	1505	0.610232	ACCTACGAACAGCCCTACGT	60.610	55.000	0.00	0.00	41.66	3.57
856	1506	1.340017	ACCTACGAACAGCCCTACGTA	60.340	52.381	0.00	0.00	39.59	3.57
857	1507	1.745087	CCTACGAACAGCCCTACGTAA	59.255	52.381	0.00	0.00	39.91	3.18
858	1508	2.164219	CCTACGAACAGCCCTACGTAAA	59.836	50.000	0.00	0.00	39.91	2.01
859	1509	2.070262	ACGAACAGCCCTACGTAAAC	57.930	50.000	0.00	0.00	37.22	2.01
860	1510	1.337167	ACGAACAGCCCTACGTAAACC	60.337	52.381	0.00	0.00	37.22	3.27
861	1511	1.067354	CGAACAGCCCTACGTAAACCT	60.067	52.381	0.00	0.00	0.00	3.50
862	1512	2.164219	CGAACAGCCCTACGTAAACCTA	59.836	50.000	0.00	0.00	0.00	3.08
863	1513	3.515630	GAACAGCCCTACGTAAACCTAC	58.484	50.000	0.00	0.00	0.00	3.18
1484	2152	7.279615	CCACCATGGTTCAGTTATCTGTATTA	58.720	38.462	16.84	0.00	36.57	0.98
1663	2521	4.631813	ACGGAGCAAAATGAGTGAATCTAC	59.368	41.667	0.00	0.00	0.00	2.59
1787	2746	9.770097	CAATAATTCTGAGTAGGCAGATTTCTA	57.230	33.333	0.00	0.00	43.84	2.10
1915	2876	1.003580	GCTTGGAATCACTGGAGGTCA	59.996	52.381	0.00	0.00	0.00	4.02
1961	2930	6.206634	TCCACACTGATTGTCCAGAATTAAAC	59.793	38.462	0.00	0.00	35.67	2.01
2059	3035	1.200948	GGTGCTTGAACTGATTGGCTC	59.799	52.381	0.00	0.00	0.00	4.70
2150	3133	3.307691	CCTTGGATTGGTGAGCTGTCTTA	60.308	47.826	0.00	0.00	0.00	2.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
129	132	3.941483	CCATACCAGGTGCTTTACAGAAG	59.059	47.826	0.76	0.00	0.00	2.85
217	220	2.682858	GCCTGGGCTTACGAAGGTTTAT	60.683	50.000	4.12	0.00	38.26	1.40
231	234	2.335712	CGAAGGTTTCAGCCTGGGC	61.336	63.158	3.00	3.00	39.17	5.36
236	239	3.004419	AGCTTTTTACGAAGGTTTCAGCC	59.996	43.478	0.00	0.00	33.89	4.85
241	244	5.488645	TTCGAAGCTTTTTACGAAGGTTT	57.511	34.783	14.55	0.00	44.68	3.27
260	263	4.030529	GTGATTTCGCCATTTGACATTTCG	59.969	41.667	0.00	0.00	0.00	3.46
303	306	0.030101	GAGAGCGAGATGACCTTCGG	59.970	60.000	0.00	0.00	0.00	4.30
305	308	1.336755	GAGGAGAGCGAGATGACCTTC	59.663	57.143	0.00	0.00	0.00	3.46
313	316	0.038310	TCAACCTGAGGAGAGCGAGA	59.962	55.000	4.99	0.00	0.00	4.04
461	465	8.956426	GTCAAAACCTATCAACATGGAATCTAA	58.044	33.333	0.00	0.00	0.00	2.10
531	1168	2.427506	GAAAAGATGCTCCTGGTTCGT	58.572	47.619	0.00	0.00	0.00	3.85
533	1170	3.078891	AGGAAAAGATGCTCCTGGTTC	57.921	47.619	0.00	0.00	40.70	3.62
546	1183	3.702330	ACGGCTTTCGAAAAAGGAAAAG	58.298	40.909	12.41	0.00	41.87	2.27
565	1203	1.945776	GAGCGTGCCTCTCGAAAACG	61.946	60.000	0.00	0.00	37.60	3.60
587	1234	5.743872	GTGTCACAACATGTTTTCTTCTTCC	59.256	40.000	8.77	0.00	37.81	3.46
594	1241	5.030295	CACTCTGTGTCACAACATGTTTTC	58.970	41.667	8.77	0.56	37.81	2.29
628	1275	1.798813	GGCTATTTGGAGTTATCGCCG	59.201	52.381	0.00	0.00	36.30	6.46
720	1370	1.070843	ACGTCAAAATGCTGTCGAACG	60.071	47.619	0.00	0.00	33.08	3.95
721	1371	2.663279	ACGTCAAAATGCTGTCGAAC	57.337	45.000	0.00	0.00	33.08	3.95
722	1372	4.449405	TCATTACGTCAAAATGCTGTCGAA	59.551	37.500	0.00	0.00	34.89	3.71
723	1373	3.991121	TCATTACGTCAAAATGCTGTCGA	59.009	39.130	0.00	0.00	34.89	4.20
724	1374	4.320667	TCATTACGTCAAAATGCTGTCG	57.679	40.909	0.00	0.00	34.89	4.35
725	1375	4.091424	GCTCATTACGTCAAAATGCTGTC	58.909	43.478	0.00	0.00	34.89	3.51
726	1376	3.119849	GGCTCATTACGTCAAAATGCTGT	60.120	43.478	0.00	0.00	34.89	4.40
727	1377	3.127548	AGGCTCATTACGTCAAAATGCTG	59.872	43.478	0.00	0.00	34.89	4.41
728	1378	3.347216	AGGCTCATTACGTCAAAATGCT	58.653	40.909	0.00	0.00	34.89	3.79
729	1379	3.375299	AGAGGCTCATTACGTCAAAATGC	59.625	43.478	18.26	0.00	34.89	3.56
730	1380	5.447818	GGAAGAGGCTCATTACGTCAAAATG	60.448	44.000	18.26	0.00	35.98	2.32
731	1381	4.636206	GGAAGAGGCTCATTACGTCAAAAT	59.364	41.667	18.26	0.00	0.00	1.82
732	1382	4.000988	GGAAGAGGCTCATTACGTCAAAA	58.999	43.478	18.26	0.00	0.00	2.44
733	1383	3.007506	TGGAAGAGGCTCATTACGTCAAA	59.992	43.478	18.26	0.00	0.00	2.69
734	1384	2.565391	TGGAAGAGGCTCATTACGTCAA	59.435	45.455	18.26	0.00	0.00	3.18
735	1385	2.176045	TGGAAGAGGCTCATTACGTCA	58.824	47.619	18.26	2.26	0.00	4.35
736	1386	2.961526	TGGAAGAGGCTCATTACGTC	57.038	50.000	18.26	3.80	0.00	4.34
737	1387	3.535561	CATTGGAAGAGGCTCATTACGT	58.464	45.455	18.26	0.00	0.00	3.57
818	1468	7.354257	TCGTAGGTGTAGCAATTTTGTTTTAC	58.646	34.615	0.00	0.00	0.00	2.01
819	1469	7.493743	TCGTAGGTGTAGCAATTTTGTTTTA	57.506	32.000	0.00	0.00	0.00	1.52
820	1470	6.380095	TCGTAGGTGTAGCAATTTTGTTTT	57.620	33.333	0.00	0.00	0.00	2.43
821	1471	6.183360	TGTTCGTAGGTGTAGCAATTTTGTTT	60.183	34.615	0.00	0.00	0.00	2.83
822	1472	5.297278	TGTTCGTAGGTGTAGCAATTTTGTT	59.703	36.000	0.00	0.00	0.00	2.83
823	1473	4.817464	TGTTCGTAGGTGTAGCAATTTTGT	59.183	37.500	0.00	0.00	0.00	2.83
824	1474	5.351233	TGTTCGTAGGTGTAGCAATTTTG	57.649	39.130	0.00	0.00	0.00	2.44
825	1475	4.083484	GCTGTTCGTAGGTGTAGCAATTTT	60.083	41.667	0.00	0.00	0.00	1.82
826	1476	3.435671	GCTGTTCGTAGGTGTAGCAATTT	59.564	43.478	0.00	0.00	0.00	1.82
827	1477	3.000727	GCTGTTCGTAGGTGTAGCAATT	58.999	45.455	0.00	0.00	0.00	2.32
828	1478	2.618053	GCTGTTCGTAGGTGTAGCAAT	58.382	47.619	0.00	0.00	0.00	3.56
829	1479	1.337447	GGCTGTTCGTAGGTGTAGCAA	60.337	52.381	0.00	0.00	33.05	3.91
830	1480	0.245539	GGCTGTTCGTAGGTGTAGCA	59.754	55.000	0.00	0.00	33.05	3.49
831	1481	0.459759	GGGCTGTTCGTAGGTGTAGC	60.460	60.000	0.00	0.00	0.00	3.58
832	1482	1.183549	AGGGCTGTTCGTAGGTGTAG	58.816	55.000	0.00	0.00	0.00	2.74
833	1483	2.094675	GTAGGGCTGTTCGTAGGTGTA	58.905	52.381	0.00	0.00	0.00	2.90
834	1484	0.893447	GTAGGGCTGTTCGTAGGTGT	59.107	55.000	0.00	0.00	0.00	4.16
835	1485	0.179145	CGTAGGGCTGTTCGTAGGTG	60.179	60.000	0.00	0.00	0.00	4.00
836	1486	0.610232	ACGTAGGGCTGTTCGTAGGT	60.610	55.000	0.00	0.00	34.78	3.08
837	1487	1.382522	TACGTAGGGCTGTTCGTAGG	58.617	55.000	0.00	0.00	37.66	3.18
838	1488	3.174375	GTTTACGTAGGGCTGTTCGTAG	58.826	50.000	0.00	0.00	39.33	3.51
839	1489	2.094752	GGTTTACGTAGGGCTGTTCGTA	60.095	50.000	0.00	0.00	37.66	3.43
840	1490	1.337167	GGTTTACGTAGGGCTGTTCGT	60.337	52.381	0.00	0.00	39.74	3.85
841	1491	1.067354	AGGTTTACGTAGGGCTGTTCG	60.067	52.381	0.00	0.00	0.00	3.95
842	1492	2.756840	AGGTTTACGTAGGGCTGTTC	57.243	50.000	0.00	0.00	0.00	3.18
843	1493	2.094545	CGTAGGTTTACGTAGGGCTGTT	60.095	50.000	0.00	0.00	45.79	3.16
844	1494	1.474077	CGTAGGTTTACGTAGGGCTGT	59.526	52.381	0.00	0.00	45.79	4.40
845	1495	2.199291	CGTAGGTTTACGTAGGGCTG	57.801	55.000	0.00	0.00	45.79	4.85
857	1507	9.506018	ACCTTTTTACATACAATTACGTAGGTT	57.494	29.630	0.00	0.00	37.53	3.50
858	1508	9.506018	AACCTTTTTACATACAATTACGTAGGT	57.494	29.630	0.00	0.00	39.51	3.08
859	1509	9.977762	GAACCTTTTTACATACAATTACGTAGG	57.022	33.333	0.00	0.00	0.00	3.18
860	1510	9.679596	CGAACCTTTTTACATACAATTACGTAG	57.320	33.333	0.00	0.00	0.00	3.51
861	1511	9.416794	TCGAACCTTTTTACATACAATTACGTA	57.583	29.630	0.00	0.00	0.00	3.57
862	1512	8.223100	GTCGAACCTTTTTACATACAATTACGT	58.777	33.333	0.00	0.00	0.00	3.57
863	1513	7.420485	CGTCGAACCTTTTTACATACAATTACG	59.580	37.037	0.00	0.00	0.00	3.18
864	1514	8.434661	TCGTCGAACCTTTTTACATACAATTAC	58.565	33.333	0.00	0.00	0.00	1.89
865	1515	8.531622	TCGTCGAACCTTTTTACATACAATTA	57.468	30.769	0.00	0.00	0.00	1.40
866	1516	7.385752	TCTCGTCGAACCTTTTTACATACAATT	59.614	33.333	0.00	0.00	0.00	2.32
867	1517	6.869913	TCTCGTCGAACCTTTTTACATACAAT	59.130	34.615	0.00	0.00	0.00	2.71
868	1518	6.215121	TCTCGTCGAACCTTTTTACATACAA	58.785	36.000	0.00	0.00	0.00	2.41
869	1519	5.771469	TCTCGTCGAACCTTTTTACATACA	58.229	37.500	0.00	0.00	0.00	2.29
870	1520	5.860716	ACTCTCGTCGAACCTTTTTACATAC	59.139	40.000	0.00	0.00	0.00	2.39
871	1521	6.017400	ACTCTCGTCGAACCTTTTTACATA	57.983	37.500	0.00	0.00	0.00	2.29
872	1522	4.879598	ACTCTCGTCGAACCTTTTTACAT	58.120	39.130	0.00	0.00	0.00	2.29
873	1523	4.311816	ACTCTCGTCGAACCTTTTTACA	57.688	40.909	0.00	0.00	0.00	2.41
996	1646	3.650907	TACTTTCGCCGCCATCGCA	62.651	57.895	0.00	0.00	34.03	5.10
1484	2152	6.270815	GCACAATCAGCAGAAATAATCACAT	58.729	36.000	0.00	0.00	0.00	3.21
1642	2425	5.645497	AGTGTAGATTCACTCATTTTGCTCC	59.355	40.000	0.00	0.00	44.07	4.70
1915	2876	8.274322	TGTGGAGATGGTACTTTGATTATGATT	58.726	33.333	0.00	0.00	0.00	2.57
1961	2930	6.726258	TCTTCACACATAACTGCATAACTG	57.274	37.500	0.00	0.00	0.00	3.16
2059	3035	5.831702	AAGAATTTCTGCCAGCATTAGAG	57.168	39.130	0.00	0.00	0.00	2.43
2150	3133	7.264947	CCAACTTCTTAAACTGAAACCAACAT	58.735	34.615	0.00	0.00	0.00	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.