Multiple sequence alignment - TraesCS5A01G294800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G294800 chr5A 100.000 5459 0 0 1 5459 503528927 503534385 0.000000e+00 10081.0
1 TraesCS5A01G294800 chr5A 100.000 51 0 0 4955 5005 503533831 503533881 1.620000e-15 95.3
2 TraesCS5A01G294800 chr5A 100.000 51 0 0 4905 4955 503533881 503533931 1.620000e-15 95.3
3 TraesCS5A01G294800 chr5D 96.250 4587 140 11 1 4573 398536052 398540620 0.000000e+00 7489.0
4 TraesCS5A01G294800 chr5D 93.578 109 7 0 4633 4741 398540619 398540727 4.380000e-36 163.0
5 TraesCS5A01G294800 chr5D 100.000 46 0 0 4740 4785 398540747 398540792 9.740000e-13 86.1
6 TraesCS5A01G294800 chr5B 95.853 4341 148 13 249 4575 478487713 478492035 0.000000e+00 6990.0
7 TraesCS5A01G294800 chr5B 97.156 211 6 0 1 211 478487502 478487712 1.870000e-94 357.0
8 TraesCS5A01G294800 chr5B 93.865 163 7 2 4797 4956 478492414 478492576 5.460000e-60 243.0
9 TraesCS5A01G294800 chr5B 91.597 119 6 3 4955 5069 478492525 478492643 1.570000e-35 161.0
10 TraesCS5A01G294800 chr5B 91.667 108 9 0 4634 4741 478492033 478492140 3.410000e-32 150.0
11 TraesCS5A01G294800 chr5B 92.188 64 4 1 5253 5316 611485791 611485729 7.530000e-14 89.8
12 TraesCS5A01G294800 chr5B 100.000 38 0 0 4748 4785 478492168 478492205 2.730000e-08 71.3
13 TraesCS5A01G294800 chr6A 88.472 746 84 2 3731 4475 571845714 571844970 0.000000e+00 900.0
14 TraesCS5A01G294800 chr6A 81.967 183 24 4 5174 5355 26267826 26268000 4.410000e-31 147.0
15 TraesCS5A01G294800 chr6D 88.204 746 86 2 3731 4475 427123685 427122941 0.000000e+00 889.0
16 TraesCS5A01G294800 chr6B 88.204 746 86 2 3731 4475 642964145 642963401 0.000000e+00 889.0
17 TraesCS5A01G294800 chr4B 82.850 379 44 12 5071 5437 364666602 364666233 2.450000e-83 320.0
18 TraesCS5A01G294800 chr4B 81.063 301 46 8 4190 4481 666802089 666801791 4.250000e-56 230.0
19 TraesCS5A01G294800 chrUn 84.942 259 34 5 4215 4470 30182680 30182936 1.950000e-64 257.0
20 TraesCS5A01G294800 chr7D 80.537 298 45 11 5146 5432 162835798 162836093 3.310000e-52 217.0
21 TraesCS5A01G294800 chr2A 87.363 182 17 3 3594 3770 18301984 18301804 2.580000e-48 204.0
22 TraesCS5A01G294800 chr2A 93.671 79 3 2 5282 5358 584520616 584520538 3.450000e-22 117.0
23 TraesCS5A01G294800 chr1A 78.571 308 55 7 5135 5438 463926586 463926286 5.580000e-45 193.0
24 TraesCS5A01G294800 chr1A 85.455 110 15 1 5268 5377 592103572 592103464 4.470000e-21 113.0
25 TraesCS5A01G294800 chr3D 79.918 244 30 12 5214 5449 432539855 432540087 1.570000e-35 161.0
26 TraesCS5A01G294800 chr2D 93.590 78 5 0 5282 5359 440781574 440781497 3.450000e-22 117.0
27 TraesCS5A01G294800 chr2D 100.000 28 0 0 4568 4595 107402959 107402932 1.000000e-02 52.8
28 TraesCS5A01G294800 chr4A 81.667 120 13 4 5181 5299 601342857 601342968 2.090000e-14 91.6
29 TraesCS5A01G294800 chr7A 83.333 96 16 0 5282 5377 48055287 48055192 7.530000e-14 89.8
30 TraesCS5A01G294800 chr3A 97.619 42 1 0 4595 4636 383299520 383299561 7.590000e-09 73.1
31 TraesCS5A01G294800 chr1D 100.000 28 0 0 4609 4636 481990576 481990549 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G294800 chr5A 503528927 503534385 5458 False 3423.866667 10081 100.000000 1 5459 3 chr5A.!!$F1 5458
1 TraesCS5A01G294800 chr5D 398536052 398540792 4740 False 2579.366667 7489 96.609333 1 4785 3 chr5D.!!$F1 4784
2 TraesCS5A01G294800 chr5B 478487502 478492643 5141 False 1328.716667 6990 95.023000 1 5069 6 chr5B.!!$F1 5068
3 TraesCS5A01G294800 chr6A 571844970 571845714 744 True 900.000000 900 88.472000 3731 4475 1 chr6A.!!$R1 744
4 TraesCS5A01G294800 chr6D 427122941 427123685 744 True 889.000000 889 88.204000 3731 4475 1 chr6D.!!$R1 744
5 TraesCS5A01G294800 chr6B 642963401 642964145 744 True 889.000000 889 88.204000 3731 4475 1 chr6B.!!$R1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.800683 TCGCATCGTGAAAGTAGCCG 60.801 55.000 0.00 0.00 0.00 5.52 F
222 224 1.000896 CGGAAATGCCAGGGTTCCT 60.001 57.895 5.09 0.00 38.97 3.36 F
812 817 2.159170 TGACAATCATATCGACGCCACA 60.159 45.455 0.00 0.00 0.00 4.17 F
2185 2191 2.092267 TCTGATGGCTATGCAACACCAT 60.092 45.455 15.35 15.35 45.52 3.55 F
2676 2682 1.134128 TGTGCAGGAAGCTGAACAAGA 60.134 47.619 0.00 0.00 39.73 3.02 F
3702 3708 0.461693 AAGAATCCTCTGAGCTGCGC 60.462 55.000 0.00 0.00 30.03 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1105 1110 0.451783 GATGGCCAATGAACGTGGAC 59.548 55.000 10.96 0.00 45.34 4.02 R
1327 1332 2.977914 TGCATCTCCTTCTCCTTTTCG 58.022 47.619 0.00 0.00 0.00 3.46 R
2340 2346 0.546122 TTGGAATCACCCCATCCTCG 59.454 55.000 0.00 0.00 38.00 4.63 R
3053 3059 2.738846 TCGTCTTGCAGCTCTTTCAATC 59.261 45.455 0.00 0.00 0.00 2.67 R
4386 4392 2.202932 ATGTCCAGCGATCGCCAC 60.203 61.111 34.89 27.24 43.17 5.01 R
5428 5667 0.107410 GGGAATGTATCACCGGTGCA 60.107 55.000 30.25 21.76 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.800683 TCGCATCGTGAAAGTAGCCG 60.801 55.000 0.00 0.00 0.00 5.52
111 113 1.072331 GGGATGGCCTGTAATGATCGT 59.928 52.381 3.32 0.00 0.00 3.73
156 158 4.453478 TGCTAAGCATCAAAAGTCAGTCAG 59.547 41.667 0.00 0.00 31.71 3.51
222 224 1.000896 CGGAAATGCCAGGGTTCCT 60.001 57.895 5.09 0.00 38.97 3.36
236 238 3.641906 AGGGTTCCTATCAGGATTACGTG 59.358 47.826 0.00 0.00 45.34 4.49
237 239 3.387050 GGGTTCCTATCAGGATTACGTGT 59.613 47.826 0.00 0.00 45.34 4.49
238 240 4.141779 GGGTTCCTATCAGGATTACGTGTT 60.142 45.833 0.00 0.00 45.34 3.32
239 241 5.425630 GGTTCCTATCAGGATTACGTGTTT 58.574 41.667 0.00 0.00 45.34 2.83
240 242 5.878669 GGTTCCTATCAGGATTACGTGTTTT 59.121 40.000 0.00 0.00 45.34 2.43
241 243 6.183360 GGTTCCTATCAGGATTACGTGTTTTG 60.183 42.308 0.00 0.00 45.34 2.44
242 244 6.045072 TCCTATCAGGATTACGTGTTTTGT 57.955 37.500 0.00 0.00 40.06 2.83
243 245 6.469410 TCCTATCAGGATTACGTGTTTTGTT 58.531 36.000 0.00 0.00 40.06 2.83
424 428 3.991773 AGCAAACATTCATGCAACATGTC 59.008 39.130 0.00 0.00 44.95 3.06
474 478 3.562557 TCTTTCCACGCCTTTTGAAGTAC 59.437 43.478 0.00 0.00 0.00 2.73
563 567 3.914426 ACTGGAATGGCTACTACAAGG 57.086 47.619 0.00 0.00 0.00 3.61
564 568 2.505819 ACTGGAATGGCTACTACAAGGG 59.494 50.000 0.00 0.00 0.00 3.95
806 811 6.151985 AGGACTAGGATGACAATCATATCGAC 59.848 42.308 0.00 0.00 37.20 4.20
812 817 2.159170 TGACAATCATATCGACGCCACA 60.159 45.455 0.00 0.00 0.00 4.17
903 908 7.133133 TCTTCACCTTTTGTAGTCTTAGGTT 57.867 36.000 0.00 0.00 37.12 3.50
1105 1110 3.545703 CCAAGGGCTACCATAGTTCTTG 58.454 50.000 0.00 0.00 40.13 3.02
1212 1217 4.876679 GGTTAGATGCCCTTCAGTAAGTTC 59.123 45.833 0.00 0.00 0.00 3.01
1219 1224 4.821805 TGCCCTTCAGTAAGTTCTTTTCAG 59.178 41.667 0.00 0.00 0.00 3.02
1366 1371 4.021229 TGCATAGAGGTAGAGAAACGGAA 58.979 43.478 0.00 0.00 0.00 4.30
1487 1492 4.693283 CGGTGCTTATTAGAGTTCATCCA 58.307 43.478 0.00 0.00 0.00 3.41
1495 1500 7.486232 GCTTATTAGAGTTCATCCAAAAAGCAC 59.514 37.037 0.00 0.00 0.00 4.40
1542 1547 8.672815 TCGCAATCATGATGAATTAAGTGTAAA 58.327 29.630 9.46 0.00 0.00 2.01
1803 1809 6.808704 TGAGATCATAGCATGAACTAATACGC 59.191 38.462 0.00 0.00 41.69 4.42
1838 1844 8.971321 GCAATTGCCTCTTTGTATATGTTATTG 58.029 33.333 20.06 0.00 34.31 1.90
1890 1896 4.989279 AGCCCATAAAACAGCATAACAG 57.011 40.909 0.00 0.00 0.00 3.16
2017 2023 3.674997 TCCAAAGACCATAACTGCACTC 58.325 45.455 0.00 0.00 0.00 3.51
2026 2032 2.973694 TAACTGCACTCCCGGTAATC 57.026 50.000 0.00 0.00 0.00 1.75
2185 2191 2.092267 TCTGATGGCTATGCAACACCAT 60.092 45.455 15.35 15.35 45.52 3.55
2340 2346 2.166459 TCAGGAAGACGATGTCATGGAC 59.834 50.000 1.37 0.00 34.60 4.02
2446 2452 5.395682 ACATGTGCATTAAAATGTCTGCT 57.604 34.783 0.00 0.00 38.65 4.24
2489 2495 7.097047 CGACACACACAGAAACAAAATTACATC 60.097 37.037 0.00 0.00 0.00 3.06
2622 2628 4.291540 TCTAAAAGTGCAGCTTGTGTTG 57.708 40.909 0.00 0.00 37.52 3.33
2676 2682 1.134128 TGTGCAGGAAGCTGAACAAGA 60.134 47.619 0.00 0.00 39.73 3.02
2727 2733 2.302445 TGGGCAAAATTTCTGGTGATGG 59.698 45.455 0.00 0.00 0.00 3.51
2787 2793 7.380870 TGAAAAATTGATGGTAAATGTCACACG 59.619 33.333 0.00 0.00 0.00 4.49
2840 2846 5.904362 AAAACATGGCTAGATGAAGGTTC 57.096 39.130 0.00 0.00 0.00 3.62
2909 2915 4.762289 AAGATAGGTTGGAGACATCACC 57.238 45.455 0.00 0.00 40.84 4.02
2916 2922 2.300152 GTTGGAGACATCACCAGTCAGA 59.700 50.000 0.00 0.00 42.32 3.27
2922 2928 4.155709 AGACATCACCAGTCAGAAAGAGA 58.844 43.478 0.00 0.00 38.46 3.10
2953 2959 6.481313 AGATGACAGAAATCATATGGAACACG 59.519 38.462 2.13 0.00 39.75 4.49
3053 3059 7.290110 AGGAAATGGAAAAACTACAAAGGAG 57.710 36.000 0.00 0.00 0.00 3.69
3131 3137 8.031277 GCCAAGAAGAAAGAATGTATTGTTGAT 58.969 33.333 0.00 0.00 0.00 2.57
3469 3475 6.530019 ACAAGAGGAAACAAACACTCATTT 57.470 33.333 0.00 0.00 32.52 2.32
3509 3515 6.371548 TGCAAGTATTTCCATCTGAACTGTAC 59.628 38.462 0.00 0.00 31.05 2.90
3531 3537 7.777910 TGTACCATAATTTTGATAGGACCCTTG 59.222 37.037 0.00 0.00 0.00 3.61
3690 3696 6.547930 ACCTTACTACTTGGAGAAGAATCC 57.452 41.667 0.00 0.00 40.03 3.01
3701 3707 1.136695 AGAAGAATCCTCTGAGCTGCG 59.863 52.381 0.00 0.00 30.03 5.18
3702 3708 0.461693 AAGAATCCTCTGAGCTGCGC 60.462 55.000 0.00 0.00 30.03 6.09
4200 4206 0.545071 TGATCCTGCAGGTCCTCACA 60.545 55.000 31.58 18.95 36.34 3.58
4260 4266 1.521457 GATGAAGATGGACGCCGCA 60.521 57.895 0.00 0.00 0.00 5.69
4419 4425 3.410628 ATCCTGCGGACCATGGCA 61.411 61.111 13.04 2.53 32.98 4.92
4506 4523 3.505386 TGCCAACAGAACATAATGGGTT 58.495 40.909 0.00 0.00 0.00 4.11
4572 4589 5.163581 GCCATAGCATTTCTCTTGTGAATGT 60.164 40.000 0.00 0.00 39.53 2.71
4573 4590 6.038603 GCCATAGCATTTCTCTTGTGAATGTA 59.961 38.462 0.00 0.00 39.53 2.29
4574 4591 7.412853 CCATAGCATTTCTCTTGTGAATGTAC 58.587 38.462 0.00 0.00 0.00 2.90
4575 4592 7.281774 CCATAGCATTTCTCTTGTGAATGTACT 59.718 37.037 0.00 0.00 0.00 2.73
4576 4593 6.734104 AGCATTTCTCTTGTGAATGTACTC 57.266 37.500 0.00 0.00 0.00 2.59
4577 4594 5.645497 AGCATTTCTCTTGTGAATGTACTCC 59.355 40.000 0.00 0.00 0.00 3.85
4578 4595 5.163713 GCATTTCTCTTGTGAATGTACTCCC 60.164 44.000 0.00 0.00 0.00 4.30
4579 4596 5.825593 TTTCTCTTGTGAATGTACTCCCT 57.174 39.130 0.00 0.00 0.00 4.20
4580 4597 5.407407 TTCTCTTGTGAATGTACTCCCTC 57.593 43.478 0.00 0.00 0.00 4.30
4581 4598 3.769844 TCTCTTGTGAATGTACTCCCTCC 59.230 47.826 0.00 0.00 0.00 4.30
4582 4599 2.496070 TCTTGTGAATGTACTCCCTCCG 59.504 50.000 0.00 0.00 0.00 4.63
4583 4600 1.933021 TGTGAATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
4584 4601 2.253610 TGTGAATGTACTCCCTCCGTT 58.746 47.619 0.00 0.00 0.00 4.44
4585 4602 2.232941 TGTGAATGTACTCCCTCCGTTC 59.767 50.000 0.00 0.00 0.00 3.95
4586 4603 1.829222 TGAATGTACTCCCTCCGTTCC 59.171 52.381 0.00 0.00 0.00 3.62
4587 4604 1.829222 GAATGTACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 0.00 3.53
4588 4605 2.176247 ATGTACTCCCTCCGTTCCAT 57.824 50.000 0.00 0.00 0.00 3.41
4589 4606 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
4590 4607 3.323774 TGTACTCCCTCCGTTCCATAT 57.676 47.619 0.00 0.00 0.00 1.78
4591 4608 3.649843 TGTACTCCCTCCGTTCCATATT 58.350 45.455 0.00 0.00 0.00 1.28
4592 4609 4.806892 TGTACTCCCTCCGTTCCATATTA 58.193 43.478 0.00 0.00 0.00 0.98
4593 4610 4.586001 TGTACTCCCTCCGTTCCATATTAC 59.414 45.833 0.00 0.00 0.00 1.89
4594 4611 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
4595 4612 3.641906 ACTCCCTCCGTTCCATATTACTG 59.358 47.826 0.00 0.00 0.00 2.74
4596 4613 3.641906 CTCCCTCCGTTCCATATTACTGT 59.358 47.826 0.00 0.00 0.00 3.55
4597 4614 4.806892 TCCCTCCGTTCCATATTACTGTA 58.193 43.478 0.00 0.00 0.00 2.74
4598 4615 4.586001 TCCCTCCGTTCCATATTACTGTAC 59.414 45.833 0.00 0.00 0.00 2.90
4599 4616 4.587684 CCCTCCGTTCCATATTACTGTACT 59.412 45.833 0.00 0.00 0.00 2.73
4600 4617 5.771666 CCCTCCGTTCCATATTACTGTACTA 59.228 44.000 0.00 0.00 0.00 1.82
4601 4618 6.266103 CCCTCCGTTCCATATTACTGTACTAA 59.734 42.308 0.00 0.00 0.00 2.24
4602 4619 7.201938 CCCTCCGTTCCATATTACTGTACTAAA 60.202 40.741 0.00 0.00 0.00 1.85
4603 4620 8.365647 CCTCCGTTCCATATTACTGTACTAAAT 58.634 37.037 0.00 0.00 0.00 1.40
4604 4621 9.408069 CTCCGTTCCATATTACTGTACTAAATC 57.592 37.037 0.00 0.00 0.00 2.17
4605 4622 8.916062 TCCGTTCCATATTACTGTACTAAATCA 58.084 33.333 0.00 0.00 0.00 2.57
4606 4623 9.193133 CCGTTCCATATTACTGTACTAAATCAG 57.807 37.037 0.00 0.00 37.65 2.90
4607 4624 9.193133 CGTTCCATATTACTGTACTAAATCAGG 57.807 37.037 0.00 0.00 36.17 3.86
4608 4625 9.490379 GTTCCATATTACTGTACTAAATCAGGG 57.510 37.037 0.00 0.00 36.17 4.45
4609 4626 9.442062 TTCCATATTACTGTACTAAATCAGGGA 57.558 33.333 0.00 0.00 36.17 4.20
4610 4627 8.867097 TCCATATTACTGTACTAAATCAGGGAC 58.133 37.037 0.00 0.00 36.17 4.46
4611 4628 7.813148 CCATATTACTGTACTAAATCAGGGACG 59.187 40.741 0.00 0.00 36.17 4.79
4612 4629 8.573885 CATATTACTGTACTAAATCAGGGACGA 58.426 37.037 0.00 0.00 36.17 4.20
4613 4630 4.985538 ACTGTACTAAATCAGGGACGAG 57.014 45.455 0.00 0.00 36.17 4.18
4614 4631 4.342359 ACTGTACTAAATCAGGGACGAGT 58.658 43.478 0.00 0.00 36.17 4.18
4615 4632 5.503927 ACTGTACTAAATCAGGGACGAGTA 58.496 41.667 0.00 0.00 36.17 2.59
4616 4633 5.948162 ACTGTACTAAATCAGGGACGAGTAA 59.052 40.000 0.00 0.00 36.17 2.24
4617 4634 6.606395 ACTGTACTAAATCAGGGACGAGTAAT 59.394 38.462 0.00 0.00 36.17 1.89
4618 4635 7.776969 ACTGTACTAAATCAGGGACGAGTAATA 59.223 37.037 0.00 0.00 36.17 0.98
4619 4636 8.701908 TGTACTAAATCAGGGACGAGTAATAT 57.298 34.615 0.00 0.00 0.00 1.28
4620 4637 8.573885 TGTACTAAATCAGGGACGAGTAATATG 58.426 37.037 0.00 0.00 0.00 1.78
4621 4638 7.834881 ACTAAATCAGGGACGAGTAATATGA 57.165 36.000 0.00 0.00 0.00 2.15
4622 4639 8.246430 ACTAAATCAGGGACGAGTAATATGAA 57.754 34.615 0.00 0.00 0.00 2.57
4623 4640 8.701895 ACTAAATCAGGGACGAGTAATATGAAA 58.298 33.333 0.00 0.00 0.00 2.69
4624 4641 7.787725 AAATCAGGGACGAGTAATATGAAAC 57.212 36.000 0.00 0.00 0.00 2.78
4625 4642 4.928601 TCAGGGACGAGTAATATGAAACG 58.071 43.478 0.00 0.00 0.00 3.60
4626 4643 4.049186 CAGGGACGAGTAATATGAAACGG 58.951 47.826 0.00 0.00 0.00 4.44
4627 4644 3.956199 AGGGACGAGTAATATGAAACGGA 59.044 43.478 0.00 0.00 0.00 4.69
4628 4645 4.037684 AGGGACGAGTAATATGAAACGGAG 59.962 45.833 0.00 0.00 0.00 4.63
4629 4646 4.296690 GGACGAGTAATATGAAACGGAGG 58.703 47.826 0.00 0.00 0.00 4.30
4630 4647 4.296690 GACGAGTAATATGAAACGGAGGG 58.703 47.826 0.00 0.00 0.00 4.30
4631 4648 3.956199 ACGAGTAATATGAAACGGAGGGA 59.044 43.478 0.00 0.00 0.00 4.20
4632 4649 4.037684 ACGAGTAATATGAAACGGAGGGAG 59.962 45.833 0.00 0.00 0.00 4.30
4683 4700 1.135373 ACGATAGGACAGAACAGTGCG 60.135 52.381 0.00 0.00 43.77 5.34
4684 4701 1.281899 GATAGGACAGAACAGTGCGC 58.718 55.000 0.00 0.00 34.76 6.09
4785 4823 2.190161 CAATGACCGCATGAAGCAATG 58.810 47.619 0.00 0.00 46.13 2.82
4787 4825 0.804364 TGACCGCATGAAGCAATGTC 59.196 50.000 0.00 0.00 46.13 3.06
4788 4826 0.247814 GACCGCATGAAGCAATGTCG 60.248 55.000 0.00 0.00 46.13 4.35
4789 4827 0.673333 ACCGCATGAAGCAATGTCGA 60.673 50.000 0.00 0.00 46.13 4.20
4790 4828 0.447406 CCGCATGAAGCAATGTCGAA 59.553 50.000 0.00 0.00 46.13 3.71
4791 4829 1.064505 CCGCATGAAGCAATGTCGAAT 59.935 47.619 0.00 0.00 46.13 3.34
4830 5068 1.900016 GGGACGGGTTGGTTGGTTC 60.900 63.158 0.00 0.00 0.00 3.62
4892 5130 4.458829 ACGCCTCTCCGGGATCCA 62.459 66.667 15.23 0.00 0.00 3.41
4893 5131 2.919856 CGCCTCTCCGGGATCCAT 60.920 66.667 15.23 0.00 0.00 3.41
4958 5196 3.103911 CGACAACCGGACAGACGC 61.104 66.667 9.46 0.00 33.91 5.19
4959 5197 2.737376 GACAACCGGACAGACGCC 60.737 66.667 9.46 0.00 0.00 5.68
4960 5198 3.509137 GACAACCGGACAGACGCCA 62.509 63.158 9.46 0.00 0.00 5.69
4961 5199 2.047274 CAACCGGACAGACGCCAT 60.047 61.111 9.46 0.00 0.00 4.40
4962 5200 1.216977 CAACCGGACAGACGCCATA 59.783 57.895 9.46 0.00 0.00 2.74
4963 5201 0.806102 CAACCGGACAGACGCCATAG 60.806 60.000 9.46 0.00 0.00 2.23
4964 5202 1.956629 AACCGGACAGACGCCATAGG 61.957 60.000 9.46 0.00 0.00 2.57
4965 5203 2.125326 CCGGACAGACGCCATAGGA 61.125 63.158 0.00 0.00 0.00 2.94
4966 5204 1.360551 CGGACAGACGCCATAGGAG 59.639 63.158 0.00 0.00 0.00 3.69
4967 5205 1.101635 CGGACAGACGCCATAGGAGA 61.102 60.000 0.00 0.00 0.00 3.71
4968 5206 1.112113 GGACAGACGCCATAGGAGAA 58.888 55.000 0.00 0.00 0.00 2.87
4969 5207 1.480954 GGACAGACGCCATAGGAGAAA 59.519 52.381 0.00 0.00 0.00 2.52
4970 5208 2.482142 GGACAGACGCCATAGGAGAAAG 60.482 54.545 0.00 0.00 0.00 2.62
4971 5209 1.482593 ACAGACGCCATAGGAGAAAGG 59.517 52.381 0.00 0.00 0.00 3.11
4972 5210 1.123928 AGACGCCATAGGAGAAAGGG 58.876 55.000 0.00 0.00 0.00 3.95
4973 5211 0.106894 GACGCCATAGGAGAAAGGGG 59.893 60.000 0.00 0.00 39.70 4.79
4974 5212 0.326238 ACGCCATAGGAGAAAGGGGA 60.326 55.000 0.00 0.00 37.50 4.81
4975 5213 0.837272 CGCCATAGGAGAAAGGGGAA 59.163 55.000 0.00 0.00 36.29 3.97
4976 5214 1.475213 CGCCATAGGAGAAAGGGGAAC 60.475 57.143 0.00 0.00 36.29 3.62
4977 5215 1.475213 GCCATAGGAGAAAGGGGAACG 60.475 57.143 0.00 0.00 0.00 3.95
4978 5216 1.475213 CCATAGGAGAAAGGGGAACGC 60.475 57.143 0.00 0.00 43.76 4.84
4979 5217 0.837940 ATAGGAGAAAGGGGAACGCC 59.162 55.000 0.00 0.00 44.92 5.68
4980 5218 1.610554 TAGGAGAAAGGGGAACGCCG 61.611 60.000 2.41 0.00 44.92 6.46
4981 5219 3.125573 GAGAAAGGGGAACGCCGC 61.126 66.667 2.41 0.00 46.91 6.53
5019 5257 1.337635 GGACAGCAGGTCTTGACTCTG 60.338 57.143 8.23 11.97 46.16 3.35
5030 5268 3.449018 GTCTTGACTCTGAGATGGGCTTA 59.551 47.826 12.44 0.00 0.00 3.09
5046 5285 1.803625 GCTTAGCCGCCGTGTGTATTA 60.804 52.381 0.00 0.00 0.00 0.98
5059 5298 5.010314 CCGTGTGTATTATGGGCTTCTAGTA 59.990 44.000 0.00 0.00 0.00 1.82
5069 5308 0.318762 GCTTCTAGTAGCCGGGGATG 59.681 60.000 10.08 0.00 35.06 3.51
5070 5309 1.996798 CTTCTAGTAGCCGGGGATGA 58.003 55.000 2.18 0.00 0.00 2.92
5071 5310 2.530701 CTTCTAGTAGCCGGGGATGAT 58.469 52.381 2.18 0.00 0.00 2.45
5072 5311 1.924731 TCTAGTAGCCGGGGATGATG 58.075 55.000 2.18 0.00 0.00 3.07
5073 5312 1.147191 TCTAGTAGCCGGGGATGATGT 59.853 52.381 2.18 0.00 0.00 3.06
5074 5313 2.377531 TCTAGTAGCCGGGGATGATGTA 59.622 50.000 2.18 0.00 0.00 2.29
5075 5314 2.327325 AGTAGCCGGGGATGATGTAT 57.673 50.000 2.18 0.00 0.00 2.29
5076 5315 2.180276 AGTAGCCGGGGATGATGTATC 58.820 52.381 2.18 0.00 34.93 2.24
5077 5316 2.180276 GTAGCCGGGGATGATGTATCT 58.820 52.381 2.18 0.00 36.03 1.98
5078 5317 0.979665 AGCCGGGGATGATGTATCTG 59.020 55.000 2.18 0.00 36.03 2.90
5079 5318 0.674895 GCCGGGGATGATGTATCTGC 60.675 60.000 2.18 0.00 36.03 4.26
5080 5319 0.036010 CCGGGGATGATGTATCTGCC 60.036 60.000 0.00 0.00 36.03 4.85
5081 5320 0.390340 CGGGGATGATGTATCTGCCG 60.390 60.000 0.00 0.00 36.03 5.69
5082 5321 0.674895 GGGGATGATGTATCTGCCGC 60.675 60.000 0.00 0.00 36.03 6.53
5083 5322 0.035317 GGGATGATGTATCTGCCGCA 59.965 55.000 0.00 0.00 36.03 5.69
5084 5323 1.151668 GGATGATGTATCTGCCGCAC 58.848 55.000 0.00 0.00 36.03 5.34
5085 5324 1.151668 GATGATGTATCTGCCGCACC 58.848 55.000 0.00 0.00 32.83 5.01
5086 5325 0.601046 ATGATGTATCTGCCGCACCG 60.601 55.000 0.00 0.00 0.00 4.94
5099 5338 3.964875 CACCGGTGCTTGTGGTGC 61.965 66.667 24.02 0.00 45.85 5.01
5100 5339 4.189580 ACCGGTGCTTGTGGTGCT 62.190 61.111 6.12 0.00 33.91 4.40
5101 5340 2.031919 CCGGTGCTTGTGGTGCTA 59.968 61.111 0.00 0.00 0.00 3.49
5102 5341 1.377202 CCGGTGCTTGTGGTGCTAT 60.377 57.895 0.00 0.00 0.00 2.97
5103 5342 1.369091 CCGGTGCTTGTGGTGCTATC 61.369 60.000 0.00 0.00 0.00 2.08
5104 5343 1.695893 CGGTGCTTGTGGTGCTATCG 61.696 60.000 0.00 0.00 0.00 2.92
5105 5344 0.673644 GGTGCTTGTGGTGCTATCGT 60.674 55.000 0.00 0.00 0.00 3.73
5106 5345 1.404986 GGTGCTTGTGGTGCTATCGTA 60.405 52.381 0.00 0.00 0.00 3.43
5107 5346 1.927174 GTGCTTGTGGTGCTATCGTAG 59.073 52.381 0.00 0.00 0.00 3.51
5119 5358 4.446857 GCTATCGTAGCGCATTTACAAA 57.553 40.909 11.47 0.00 42.62 2.83
5120 5359 5.018695 GCTATCGTAGCGCATTTACAAAT 57.981 39.130 11.47 3.06 42.62 2.32
5121 5360 5.440685 GCTATCGTAGCGCATTTACAAATT 58.559 37.500 11.47 0.00 42.62 1.82
5122 5361 5.907391 GCTATCGTAGCGCATTTACAAATTT 59.093 36.000 11.47 0.00 42.62 1.82
5123 5362 6.413818 GCTATCGTAGCGCATTTACAAATTTT 59.586 34.615 11.47 0.00 42.62 1.82
5124 5363 7.044314 GCTATCGTAGCGCATTTACAAATTTTT 60.044 33.333 11.47 0.00 42.62 1.94
5164 5403 7.698836 AAAAATAGCACATTCACACAACTTC 57.301 32.000 0.00 0.00 0.00 3.01
5165 5404 4.668576 ATAGCACATTCACACAACTTCG 57.331 40.909 0.00 0.00 0.00 3.79
5166 5405 1.603802 AGCACATTCACACAACTTCGG 59.396 47.619 0.00 0.00 0.00 4.30
5167 5406 1.333619 GCACATTCACACAACTTCGGT 59.666 47.619 0.00 0.00 0.00 4.69
5168 5407 2.602217 GCACATTCACACAACTTCGGTC 60.602 50.000 0.00 0.00 0.00 4.79
5169 5408 2.872245 CACATTCACACAACTTCGGTCT 59.128 45.455 0.00 0.00 0.00 3.85
5170 5409 4.055360 CACATTCACACAACTTCGGTCTA 58.945 43.478 0.00 0.00 0.00 2.59
5171 5410 4.690748 CACATTCACACAACTTCGGTCTAT 59.309 41.667 0.00 0.00 0.00 1.98
5172 5411 4.690748 ACATTCACACAACTTCGGTCTATG 59.309 41.667 0.00 0.00 0.00 2.23
5173 5412 4.330944 TTCACACAACTTCGGTCTATGT 57.669 40.909 0.00 0.00 0.00 2.29
5174 5413 4.330944 TCACACAACTTCGGTCTATGTT 57.669 40.909 0.00 0.00 0.00 2.71
5175 5414 4.055360 TCACACAACTTCGGTCTATGTTG 58.945 43.478 0.00 0.00 43.55 3.33
5176 5415 2.806244 ACACAACTTCGGTCTATGTTGC 59.194 45.455 0.00 0.00 42.22 4.17
5177 5416 2.159627 CACAACTTCGGTCTATGTTGCC 59.840 50.000 0.00 0.00 42.22 4.52
5178 5417 1.393539 CAACTTCGGTCTATGTTGCCG 59.606 52.381 0.00 0.00 46.12 5.69
5179 5418 0.606604 ACTTCGGTCTATGTTGCCGT 59.393 50.000 0.00 0.00 45.11 5.68
5180 5419 1.820519 ACTTCGGTCTATGTTGCCGTA 59.179 47.619 0.00 0.00 45.11 4.02
5181 5420 2.231964 ACTTCGGTCTATGTTGCCGTAA 59.768 45.455 0.00 0.00 45.11 3.18
5182 5421 3.255725 CTTCGGTCTATGTTGCCGTAAA 58.744 45.455 0.00 0.00 45.11 2.01
5183 5422 3.316071 TCGGTCTATGTTGCCGTAAAA 57.684 42.857 0.00 0.00 45.11 1.52
5184 5423 3.864243 TCGGTCTATGTTGCCGTAAAAT 58.136 40.909 0.00 0.00 45.11 1.82
5185 5424 4.255301 TCGGTCTATGTTGCCGTAAAATT 58.745 39.130 0.00 0.00 45.11 1.82
5186 5425 4.696402 TCGGTCTATGTTGCCGTAAAATTT 59.304 37.500 0.00 0.00 45.11 1.82
5187 5426 5.025826 CGGTCTATGTTGCCGTAAAATTTC 58.974 41.667 0.00 0.00 40.53 2.17
5188 5427 5.391097 CGGTCTATGTTGCCGTAAAATTTCA 60.391 40.000 0.00 0.00 40.53 2.69
5189 5428 6.383415 GGTCTATGTTGCCGTAAAATTTCAA 58.617 36.000 0.00 0.00 0.00 2.69
5190 5429 6.864165 GGTCTATGTTGCCGTAAAATTTCAAA 59.136 34.615 0.00 0.00 0.00 2.69
5191 5430 7.544217 GGTCTATGTTGCCGTAAAATTTCAAAT 59.456 33.333 0.00 0.00 0.00 2.32
5192 5431 8.583765 GTCTATGTTGCCGTAAAATTTCAAATC 58.416 33.333 0.00 0.00 0.00 2.17
5193 5432 8.300286 TCTATGTTGCCGTAAAATTTCAAATCA 58.700 29.630 0.00 0.00 0.00 2.57
5194 5433 7.721286 ATGTTGCCGTAAAATTTCAAATCAA 57.279 28.000 0.00 0.00 0.00 2.57
5195 5434 7.539712 TGTTGCCGTAAAATTTCAAATCAAA 57.460 28.000 0.00 0.00 0.00 2.69
5196 5435 7.974675 TGTTGCCGTAAAATTTCAAATCAAAA 58.025 26.923 0.00 0.00 0.00 2.44
5197 5436 8.616076 TGTTGCCGTAAAATTTCAAATCAAAAT 58.384 25.926 0.00 0.00 0.00 1.82
5198 5437 9.444534 GTTGCCGTAAAATTTCAAATCAAAATT 57.555 25.926 0.00 0.00 37.80 1.82
5224 5463 9.959749 TTAAAGTATTGCTTGAGGTACAAAAAG 57.040 29.630 0.00 0.00 38.08 2.27
5225 5464 7.817418 AAGTATTGCTTGAGGTACAAAAAGA 57.183 32.000 0.00 0.00 38.08 2.52
5226 5465 7.817418 AGTATTGCTTGAGGTACAAAAAGAA 57.183 32.000 0.00 0.00 38.08 2.52
5227 5466 8.232913 AGTATTGCTTGAGGTACAAAAAGAAA 57.767 30.769 0.00 0.00 38.08 2.52
5228 5467 8.691797 AGTATTGCTTGAGGTACAAAAAGAAAA 58.308 29.630 0.00 0.00 38.08 2.29
5229 5468 9.308318 GTATTGCTTGAGGTACAAAAAGAAAAA 57.692 29.630 0.00 0.00 38.08 1.94
5260 5499 9.817809 ACACTGAATAGTACATACCATAAGTTG 57.182 33.333 0.00 0.00 34.74 3.16
5261 5500 9.261180 CACTGAATAGTACATACCATAAGTTGG 57.739 37.037 0.00 0.00 42.91 3.77
5262 5501 7.931948 ACTGAATAGTACATACCATAAGTTGGC 59.068 37.037 0.00 0.00 41.75 4.52
5274 5513 5.351458 CCATAAGTTGGCTTTAAATCTGGC 58.649 41.667 0.00 0.00 39.09 4.85
5275 5514 3.961480 AAGTTGGCTTTAAATCTGGCC 57.039 42.857 8.82 8.82 44.31 5.36
5276 5515 2.179427 AGTTGGCTTTAAATCTGGCCC 58.821 47.619 12.27 0.57 43.50 5.80
5277 5516 1.899142 GTTGGCTTTAAATCTGGCCCA 59.101 47.619 12.27 0.74 43.50 5.36
5278 5517 2.501316 GTTGGCTTTAAATCTGGCCCAT 59.499 45.455 12.27 0.00 43.50 4.00
5279 5518 2.831565 TGGCTTTAAATCTGGCCCATT 58.168 42.857 12.27 0.00 43.50 3.16
5280 5519 3.987745 TGGCTTTAAATCTGGCCCATTA 58.012 40.909 12.27 0.00 43.50 1.90
5281 5520 4.555689 TGGCTTTAAATCTGGCCCATTAT 58.444 39.130 12.27 0.00 43.50 1.28
5282 5521 4.588528 TGGCTTTAAATCTGGCCCATTATC 59.411 41.667 12.27 0.00 43.50 1.75
5283 5522 4.588528 GGCTTTAAATCTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
5284 5523 5.509670 GGCTTTAAATCTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
5285 5524 5.068987 GCTTTAAATCTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
5286 5525 6.239402 GCTTTAAATCTGGCCCATTATCACAT 60.239 38.462 0.00 0.00 0.00 3.21
5287 5526 7.673641 TTTAAATCTGGCCCATTATCACATT 57.326 32.000 0.00 0.00 0.00 2.71
5288 5527 5.540400 AAATCTGGCCCATTATCACATTG 57.460 39.130 0.00 0.00 0.00 2.82
5289 5528 3.949586 TCTGGCCCATTATCACATTGA 57.050 42.857 0.00 0.00 0.00 2.57
5290 5529 4.458256 TCTGGCCCATTATCACATTGAT 57.542 40.909 0.00 0.00 40.72 2.57
5291 5530 4.146564 TCTGGCCCATTATCACATTGATG 58.853 43.478 0.00 0.00 37.70 3.07
5292 5531 3.893200 CTGGCCCATTATCACATTGATGT 59.107 43.478 0.00 0.00 42.84 3.06
5293 5532 3.890756 TGGCCCATTATCACATTGATGTC 59.109 43.478 0.00 0.00 39.39 3.06
5294 5533 3.890756 GGCCCATTATCACATTGATGTCA 59.109 43.478 0.00 0.00 39.39 3.58
5295 5534 4.341806 GGCCCATTATCACATTGATGTCAA 59.658 41.667 0.00 0.00 39.39 3.18
5296 5535 5.163426 GGCCCATTATCACATTGATGTCAAA 60.163 40.000 0.00 0.00 39.39 2.69
5297 5536 6.339730 GCCCATTATCACATTGATGTCAAAA 58.660 36.000 0.00 0.00 39.39 2.44
5298 5537 6.987992 GCCCATTATCACATTGATGTCAAAAT 59.012 34.615 0.00 0.00 39.39 1.82
5299 5538 7.496591 GCCCATTATCACATTGATGTCAAAATT 59.503 33.333 0.00 0.00 39.39 1.82
5300 5539 9.386010 CCCATTATCACATTGATGTCAAAATTT 57.614 29.630 0.00 0.00 39.39 1.82
5313 5552 9.666626 TGATGTCAAAATTTTCATTTTTGCATC 57.333 25.926 22.22 22.22 44.57 3.91
5314 5553 9.887406 GATGTCAAAATTTTCATTTTTGCATCT 57.113 25.926 22.00 7.97 43.31 2.90
5315 5554 9.887406 ATGTCAAAATTTTCATTTTTGCATCTC 57.113 25.926 0.00 0.00 40.09 2.75
5316 5555 8.063038 TGTCAAAATTTTCATTTTTGCATCTCG 58.937 29.630 0.00 0.00 40.09 4.04
5317 5556 8.063630 GTCAAAATTTTCATTTTTGCATCTCGT 58.936 29.630 0.00 0.00 40.09 4.18
5318 5557 8.063038 TCAAAATTTTCATTTTTGCATCTCGTG 58.937 29.630 0.00 0.00 40.09 4.35
5319 5558 6.852345 AAAATTTTCATTTTTGCATCTCGTGC 59.148 30.769 0.00 0.00 41.89 5.34
5320 5559 7.466996 AAAATTTTCATTTTTGCATCTCGTGCA 60.467 29.630 0.00 0.00 45.98 4.57
5330 5569 3.454042 CATCTCGTGCAATGTTTCGAA 57.546 42.857 0.00 0.00 32.12 3.71
5331 5570 4.007282 CATCTCGTGCAATGTTTCGAAT 57.993 40.909 0.00 0.00 32.12 3.34
5332 5571 4.406069 CATCTCGTGCAATGTTTCGAATT 58.594 39.130 0.00 0.00 32.12 2.17
5333 5572 4.481930 TCTCGTGCAATGTTTCGAATTT 57.518 36.364 0.00 0.00 32.12 1.82
5334 5573 4.854399 TCTCGTGCAATGTTTCGAATTTT 58.146 34.783 0.00 0.00 32.12 1.82
5335 5574 4.674662 TCTCGTGCAATGTTTCGAATTTTG 59.325 37.500 0.00 4.87 32.12 2.44
5336 5575 4.602006 TCGTGCAATGTTTCGAATTTTGA 58.398 34.783 15.39 0.00 0.00 2.69
5337 5576 5.218885 TCGTGCAATGTTTCGAATTTTGAT 58.781 33.333 15.39 0.00 0.00 2.57
5338 5577 6.374578 TCGTGCAATGTTTCGAATTTTGATA 58.625 32.000 15.39 4.85 0.00 2.15
5339 5578 7.026562 TCGTGCAATGTTTCGAATTTTGATAT 58.973 30.769 15.39 0.00 0.00 1.63
5340 5579 7.008176 TCGTGCAATGTTTCGAATTTTGATATG 59.992 33.333 15.39 10.22 0.00 1.78
5341 5580 6.896088 GTGCAATGTTTCGAATTTTGATATGC 59.104 34.615 15.39 11.16 0.00 3.14
5342 5581 6.589139 TGCAATGTTTCGAATTTTGATATGCA 59.411 30.769 15.39 12.98 35.45 3.96
5343 5582 7.117379 TGCAATGTTTCGAATTTTGATATGCAA 59.883 29.630 15.39 0.00 34.96 4.08
5344 5583 8.117988 GCAATGTTTCGAATTTTGATATGCAAT 58.882 29.630 15.39 0.00 36.15 3.56
5345 5584 9.976255 CAATGTTTCGAATTTTGATATGCAATT 57.024 25.926 0.00 0.00 36.15 2.32
5351 5590 9.636879 TTCGAATTTTGATATGCAATTTTCTGA 57.363 25.926 0.00 0.00 36.15 3.27
5352 5591 9.075519 TCGAATTTTGATATGCAATTTTCTGAC 57.924 29.630 0.00 0.00 36.15 3.51
5353 5592 8.862074 CGAATTTTGATATGCAATTTTCTGACA 58.138 29.630 0.00 0.00 36.15 3.58
5356 5595 8.883954 TTTTGATATGCAATTTTCTGACAACA 57.116 26.923 0.00 0.00 36.15 3.33
5357 5596 9.491675 TTTTGATATGCAATTTTCTGACAACAT 57.508 25.926 0.00 0.00 36.15 2.71
5358 5597 8.692110 TTGATATGCAATTTTCTGACAACATC 57.308 30.769 0.00 0.00 0.00 3.06
5359 5598 7.259882 TGATATGCAATTTTCTGACAACATCC 58.740 34.615 0.00 0.00 0.00 3.51
5360 5599 4.255833 TGCAATTTTCTGACAACATCCC 57.744 40.909 0.00 0.00 0.00 3.85
5361 5600 3.896888 TGCAATTTTCTGACAACATCCCT 59.103 39.130 0.00 0.00 0.00 4.20
5362 5601 4.344679 TGCAATTTTCTGACAACATCCCTT 59.655 37.500 0.00 0.00 0.00 3.95
5363 5602 4.687483 GCAATTTTCTGACAACATCCCTTG 59.313 41.667 0.00 0.00 0.00 3.61
5364 5603 5.509501 GCAATTTTCTGACAACATCCCTTGA 60.510 40.000 0.00 0.00 0.00 3.02
5365 5604 6.694447 CAATTTTCTGACAACATCCCTTGAT 58.306 36.000 0.00 0.00 0.00 2.57
5377 5616 5.496133 CATCCCTTGATGTTGAGTCAATC 57.504 43.478 9.18 4.18 42.87 2.67
5378 5617 4.916041 TCCCTTGATGTTGAGTCAATCT 57.084 40.909 9.18 0.00 35.26 2.40
5379 5618 4.582869 TCCCTTGATGTTGAGTCAATCTG 58.417 43.478 9.18 1.84 35.26 2.90
5380 5619 3.128242 CCCTTGATGTTGAGTCAATCTGC 59.872 47.826 9.18 0.00 35.26 4.26
5381 5620 4.008330 CCTTGATGTTGAGTCAATCTGCT 58.992 43.478 9.18 0.00 35.26 4.24
5382 5621 5.181009 CCTTGATGTTGAGTCAATCTGCTA 58.819 41.667 9.18 0.00 35.26 3.49
5383 5622 5.293814 CCTTGATGTTGAGTCAATCTGCTAG 59.706 44.000 9.18 5.83 35.26 3.42
5384 5623 5.665916 TGATGTTGAGTCAATCTGCTAGA 57.334 39.130 9.18 0.00 0.00 2.43
5385 5624 5.414360 TGATGTTGAGTCAATCTGCTAGAC 58.586 41.667 9.18 0.00 0.00 2.59
5386 5625 5.186603 TGATGTTGAGTCAATCTGCTAGACT 59.813 40.000 9.18 0.00 44.71 3.24
5387 5626 5.474578 TGTTGAGTCAATCTGCTAGACTT 57.525 39.130 9.18 0.00 42.29 3.01
5388 5627 5.858381 TGTTGAGTCAATCTGCTAGACTTT 58.142 37.500 9.18 0.00 42.29 2.66
5389 5628 6.291377 TGTTGAGTCAATCTGCTAGACTTTT 58.709 36.000 9.18 0.00 42.29 2.27
5390 5629 6.767902 TGTTGAGTCAATCTGCTAGACTTTTT 59.232 34.615 9.18 0.00 42.29 1.94
5391 5630 7.931407 TGTTGAGTCAATCTGCTAGACTTTTTA 59.069 33.333 9.18 0.00 42.29 1.52
5392 5631 8.940952 GTTGAGTCAATCTGCTAGACTTTTTAT 58.059 33.333 9.18 0.00 42.29 1.40
5393 5632 9.507329 TTGAGTCAATCTGCTAGACTTTTTATT 57.493 29.630 0.08 0.00 42.29 1.40
5394 5633 9.507329 TGAGTCAATCTGCTAGACTTTTTATTT 57.493 29.630 0.00 0.00 42.29 1.40
5425 5664 6.611380 CATTTTAAAATGCACTACGTGTCC 57.389 37.500 24.00 0.00 39.29 4.02
5426 5665 4.392619 TTTAAAATGCACTACGTGTCCG 57.607 40.909 0.00 0.00 35.75 4.79
5427 5666 1.153353 AAAATGCACTACGTGTCCGG 58.847 50.000 0.00 0.00 38.78 5.14
5428 5667 0.034337 AAATGCACTACGTGTCCGGT 59.966 50.000 0.00 0.00 38.78 5.28
5429 5668 0.669318 AATGCACTACGTGTCCGGTG 60.669 55.000 0.00 0.82 38.78 4.94
5430 5669 3.110178 GCACTACGTGTCCGGTGC 61.110 66.667 0.00 7.44 42.20 5.01
5431 5670 2.337170 CACTACGTGTCCGGTGCA 59.663 61.111 0.00 0.00 38.78 4.57
5432 5671 2.019951 CACTACGTGTCCGGTGCAC 61.020 63.158 8.80 8.80 38.78 4.57
5433 5672 2.431942 CTACGTGTCCGGTGCACC 60.432 66.667 26.78 26.78 38.78 5.01
5443 5682 4.954933 GGTGCACCGGTGATACAT 57.045 55.556 38.30 0.00 0.00 2.29
5444 5683 3.168773 GGTGCACCGGTGATACATT 57.831 52.632 38.30 0.00 0.00 2.71
5445 5684 1.014352 GGTGCACCGGTGATACATTC 58.986 55.000 38.30 18.37 0.00 2.67
5446 5685 1.014352 GTGCACCGGTGATACATTCC 58.986 55.000 38.30 17.61 0.00 3.01
5447 5686 0.107410 TGCACCGGTGATACATTCCC 60.107 55.000 38.30 16.87 0.00 3.97
5448 5687 0.180406 GCACCGGTGATACATTCCCT 59.820 55.000 38.30 0.00 0.00 4.20
5449 5688 1.810412 GCACCGGTGATACATTCCCTC 60.810 57.143 38.30 11.71 0.00 4.30
5450 5689 1.762957 CACCGGTGATACATTCCCTCT 59.237 52.381 31.31 0.00 0.00 3.69
5451 5690 2.963101 CACCGGTGATACATTCCCTCTA 59.037 50.000 31.31 0.00 0.00 2.43
5452 5691 2.963782 ACCGGTGATACATTCCCTCTAC 59.036 50.000 6.12 0.00 0.00 2.59
5453 5692 3.231818 CCGGTGATACATTCCCTCTACT 58.768 50.000 0.00 0.00 0.00 2.57
5454 5693 4.141088 ACCGGTGATACATTCCCTCTACTA 60.141 45.833 6.12 0.00 0.00 1.82
5455 5694 4.459685 CCGGTGATACATTCCCTCTACTAG 59.540 50.000 0.00 0.00 0.00 2.57
5456 5695 4.082679 CGGTGATACATTCCCTCTACTAGC 60.083 50.000 0.00 0.00 0.00 3.42
5457 5696 4.221041 GGTGATACATTCCCTCTACTAGCC 59.779 50.000 0.00 0.00 0.00 3.93
5458 5697 5.081032 GTGATACATTCCCTCTACTAGCCT 58.919 45.833 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.229784 CGAAAAATTTGTCCAGAATAGATCATG 57.770 33.333 2.68 0.00 0.00 3.07
37 38 4.403453 GCTACTTTCACGATGCGAAAAAT 58.597 39.130 0.00 0.00 32.24 1.82
61 62 0.733150 GCCGGCAGTTCCAAATAGAC 59.267 55.000 24.80 0.00 34.01 2.59
111 113 2.040939 TGAAGTTGTCCCGTTAGGTGA 58.959 47.619 0.00 0.00 36.75 4.02
156 158 4.336713 GCTTCTAAACATGAATGTCCTCCC 59.663 45.833 0.00 0.00 40.80 4.30
222 224 7.915293 ATCAACAAAACACGTAATCCTGATA 57.085 32.000 0.00 0.00 0.00 2.15
239 241 8.717821 GCAAGTATAACTGTGAGTTATCAACAA 58.282 33.333 11.38 0.00 45.49 2.83
240 242 8.094548 AGCAAGTATAACTGTGAGTTATCAACA 58.905 33.333 11.38 0.00 45.49 3.33
241 243 8.480643 AGCAAGTATAACTGTGAGTTATCAAC 57.519 34.615 11.38 6.73 45.49 3.18
455 459 1.868498 CGTACTTCAAAAGGCGTGGAA 59.132 47.619 0.00 0.00 0.00 3.53
474 478 2.253392 GCAGAAAATTGAGTCCTGCG 57.747 50.000 0.00 0.00 40.40 5.18
563 567 2.502142 AGGAAACATCGGTTAACCCC 57.498 50.000 19.09 11.88 35.82 4.95
564 568 5.163591 CCATTTAGGAAACATCGGTTAACCC 60.164 44.000 19.09 2.72 41.22 4.11
612 617 0.179029 ACTTCGGGTCCCAAGTGTTG 60.179 55.000 19.24 0.00 31.42 3.33
806 811 1.196354 CTTTTCTTCAGCTCTGTGGCG 59.804 52.381 0.00 0.00 37.29 5.69
812 817 2.439507 TGGACCACTTTTCTTCAGCTCT 59.560 45.455 0.00 0.00 0.00 4.09
903 908 0.755079 AGCAGAGCTGAAGACACACA 59.245 50.000 0.85 0.00 37.57 3.72
957 962 5.003096 ACCCTGAGAAATCAAGAATTGGT 57.997 39.130 0.00 0.00 44.82 3.67
965 970 4.020218 CCTACACAGACCCTGAGAAATCAA 60.020 45.833 0.45 0.00 35.18 2.57
1105 1110 0.451783 GATGGCCAATGAACGTGGAC 59.548 55.000 10.96 0.00 45.34 4.02
1272 1277 5.047660 ACTGCAGTTGTTGGTTAGAAACAAA 60.048 36.000 15.25 0.00 46.11 2.83
1327 1332 2.977914 TGCATCTCCTTCTCCTTTTCG 58.022 47.619 0.00 0.00 0.00 3.46
1366 1371 3.881688 GTGATAGCATCTTGACCATTGCT 59.118 43.478 1.61 1.61 46.51 3.91
1462 1467 3.782046 TGAACTCTAATAAGCACCGCTC 58.218 45.455 0.00 0.00 38.25 5.03
1487 1492 8.798859 AATATCACATGACTAGAGTGCTTTTT 57.201 30.769 0.00 0.00 33.44 1.94
1495 1500 6.476706 TGCGAACAAATATCACATGACTAGAG 59.523 38.462 0.00 0.00 0.00 2.43
1663 1669 3.496309 CTGCAAGGACACAGGCCCA 62.496 63.158 0.00 0.00 0.00 5.36
1803 1809 4.996788 AAGAGGCAATTGCTTCCTTATG 57.003 40.909 31.91 0.00 46.80 1.90
1838 1844 6.811253 TGTCCATTTGTACAGGTTACATTC 57.189 37.500 0.00 0.00 0.00 2.67
1890 1896 8.888579 ACATGTTCCTGCATAACTTACTATAC 57.111 34.615 11.92 0.00 0.00 1.47
2017 2023 9.355916 TCTAGATATGATTCATAGATTACCGGG 57.644 37.037 6.32 0.00 29.42 5.73
2185 2191 4.454678 AGTCTGCTCACAAAATCACTTGA 58.545 39.130 0.00 0.00 0.00 3.02
2340 2346 0.546122 TTGGAATCACCCCATCCTCG 59.454 55.000 0.00 0.00 38.00 4.63
2404 2410 6.151985 ACATGTTGTGGTAGTTGTCTTGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
2405 2411 5.650266 ACATGTTGTGGTAGTTGTCTTGAAA 59.350 36.000 0.00 0.00 0.00 2.69
2446 2452 6.812656 TGTGTGTCGTCAAACTTAAAGAGTAA 59.187 34.615 4.61 0.00 37.72 2.24
2489 2495 5.181009 TGAGCATGGAGTAAACTCAATCAG 58.819 41.667 11.98 0.00 44.60 2.90
2547 2553 5.496133 AGTTAATCAACATGCATCTGAGC 57.504 39.130 12.34 4.82 37.10 4.26
2604 2610 3.806625 ATCAACACAAGCTGCACTTTT 57.193 38.095 1.02 0.00 36.04 2.27
2622 2628 9.468532 GGAATGGAGCAATCAGTTTATTTTATC 57.531 33.333 0.00 0.00 0.00 1.75
2676 2682 7.147949 CCTCAGAAGCATTTATTTCCTCAATGT 60.148 37.037 0.00 0.00 31.60 2.71
2727 2733 5.297547 TCATATTTCTGGAACTCCGTATGC 58.702 41.667 0.00 0.00 39.43 3.14
2787 2793 8.451908 AAATAGGCATTGACAAAGGTAGTATC 57.548 34.615 0.00 0.00 0.00 2.24
2885 2891 5.491982 GTGATGTCTCCAACCTATCTTTGT 58.508 41.667 0.00 0.00 0.00 2.83
2909 2915 9.212641 TGTCATCTATTTTTCTCTTTCTGACTG 57.787 33.333 0.00 0.00 32.57 3.51
2958 2964 3.849911 CTGTACCGATGTTCTGTGACAT 58.150 45.455 0.00 0.00 42.68 3.06
2966 2972 1.705256 TCAACGCTGTACCGATGTTC 58.295 50.000 0.00 0.00 33.48 3.18
3053 3059 2.738846 TCGTCTTGCAGCTCTTTCAATC 59.261 45.455 0.00 0.00 0.00 2.67
3131 3137 5.640189 TTGTTTTGGTAACGTTTTCTCCA 57.360 34.783 5.91 8.04 42.51 3.86
3456 3462 8.902540 TTACTCTGTATGAAATGAGTGTTTGT 57.097 30.769 0.00 0.00 39.69 2.83
3469 3475 9.534565 GAAATACTTGCATCTTACTCTGTATGA 57.465 33.333 0.00 0.00 0.00 2.15
3509 3515 7.660030 AACAAGGGTCCTATCAAAATTATGG 57.340 36.000 0.00 0.00 0.00 2.74
3531 3537 6.619801 TCTCTTAAAGAACTGCAGGAAAAC 57.380 37.500 19.93 4.33 0.00 2.43
3579 3585 4.043812 AGGAGGGGTGATTATCCATCAATG 59.956 45.833 3.67 0.00 43.93 2.82
3701 3707 5.972107 TTCCTCCGGTTACTATATGTAGC 57.028 43.478 0.00 0.00 32.08 3.58
3702 3708 7.893658 ACATTTCCTCCGGTTACTATATGTAG 58.106 38.462 0.00 0.00 32.08 2.74
4200 4206 2.604686 TTGAGGTCGAGCAGCCCT 60.605 61.111 18.15 4.01 0.00 5.19
4386 4392 2.202932 ATGTCCAGCGATCGCCAC 60.203 61.111 34.89 27.24 43.17 5.01
4419 4425 2.871096 TCCGGGATTTACTTGCAGTT 57.129 45.000 0.00 0.00 0.00 3.16
4506 4523 8.506437 CAAATGCAGTTTAGATTCACAGACTAA 58.494 33.333 0.00 0.00 0.00 2.24
4572 4589 4.831155 CAGTAATATGGAACGGAGGGAGTA 59.169 45.833 0.00 0.00 0.00 2.59
4573 4590 3.641906 CAGTAATATGGAACGGAGGGAGT 59.358 47.826 0.00 0.00 0.00 3.85
4574 4591 3.641906 ACAGTAATATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
4575 4592 3.649843 ACAGTAATATGGAACGGAGGGA 58.350 45.455 0.00 0.00 0.00 4.20
4576 4593 4.587684 AGTACAGTAATATGGAACGGAGGG 59.412 45.833 0.00 0.00 0.00 4.30
4577 4594 5.786264 AGTACAGTAATATGGAACGGAGG 57.214 43.478 0.00 0.00 0.00 4.30
4578 4595 9.408069 GATTTAGTACAGTAATATGGAACGGAG 57.592 37.037 0.00 0.00 0.00 4.63
4579 4596 8.916062 TGATTTAGTACAGTAATATGGAACGGA 58.084 33.333 0.00 0.00 0.00 4.69
4580 4597 9.193133 CTGATTTAGTACAGTAATATGGAACGG 57.807 37.037 0.00 0.00 0.00 4.44
4581 4598 9.193133 CCTGATTTAGTACAGTAATATGGAACG 57.807 37.037 0.00 0.00 32.93 3.95
4582 4599 9.490379 CCCTGATTTAGTACAGTAATATGGAAC 57.510 37.037 0.00 0.00 32.93 3.62
4583 4600 9.442062 TCCCTGATTTAGTACAGTAATATGGAA 57.558 33.333 0.00 0.00 32.93 3.53
4584 4601 8.867097 GTCCCTGATTTAGTACAGTAATATGGA 58.133 37.037 0.00 0.00 32.93 3.41
4585 4602 7.813148 CGTCCCTGATTTAGTACAGTAATATGG 59.187 40.741 0.00 0.00 32.93 2.74
4586 4603 8.573885 TCGTCCCTGATTTAGTACAGTAATATG 58.426 37.037 0.00 0.00 32.93 1.78
4587 4604 8.701908 TCGTCCCTGATTTAGTACAGTAATAT 57.298 34.615 0.00 0.00 32.93 1.28
4588 4605 7.776969 ACTCGTCCCTGATTTAGTACAGTAATA 59.223 37.037 0.00 0.00 32.93 0.98
4589 4606 6.606395 ACTCGTCCCTGATTTAGTACAGTAAT 59.394 38.462 0.00 0.00 32.93 1.89
4590 4607 5.948162 ACTCGTCCCTGATTTAGTACAGTAA 59.052 40.000 0.00 0.00 32.93 2.24
4591 4608 5.503927 ACTCGTCCCTGATTTAGTACAGTA 58.496 41.667 0.00 0.00 32.93 2.74
4592 4609 4.342359 ACTCGTCCCTGATTTAGTACAGT 58.658 43.478 0.00 0.00 32.93 3.55
4593 4610 4.985538 ACTCGTCCCTGATTTAGTACAG 57.014 45.455 0.00 0.00 0.00 2.74
4594 4611 8.573885 CATATTACTCGTCCCTGATTTAGTACA 58.426 37.037 0.00 0.00 0.00 2.90
4595 4612 8.790718 TCATATTACTCGTCCCTGATTTAGTAC 58.209 37.037 0.00 0.00 0.00 2.73
4596 4613 8.929260 TCATATTACTCGTCCCTGATTTAGTA 57.071 34.615 0.00 0.00 0.00 1.82
4597 4614 7.834881 TCATATTACTCGTCCCTGATTTAGT 57.165 36.000 0.00 0.00 0.00 2.24
4598 4615 8.979574 GTTTCATATTACTCGTCCCTGATTTAG 58.020 37.037 0.00 0.00 0.00 1.85
4599 4616 7.650504 CGTTTCATATTACTCGTCCCTGATTTA 59.349 37.037 0.00 0.00 0.00 1.40
4600 4617 6.479001 CGTTTCATATTACTCGTCCCTGATTT 59.521 38.462 0.00 0.00 0.00 2.17
4601 4618 5.983720 CGTTTCATATTACTCGTCCCTGATT 59.016 40.000 0.00 0.00 0.00 2.57
4602 4619 5.509163 CCGTTTCATATTACTCGTCCCTGAT 60.509 44.000 0.00 0.00 0.00 2.90
4603 4620 4.202080 CCGTTTCATATTACTCGTCCCTGA 60.202 45.833 0.00 0.00 0.00 3.86
4604 4621 4.049186 CCGTTTCATATTACTCGTCCCTG 58.951 47.826 0.00 0.00 0.00 4.45
4605 4622 3.956199 TCCGTTTCATATTACTCGTCCCT 59.044 43.478 0.00 0.00 0.00 4.20
4606 4623 4.296690 CTCCGTTTCATATTACTCGTCCC 58.703 47.826 0.00 0.00 0.00 4.46
4607 4624 4.296690 CCTCCGTTTCATATTACTCGTCC 58.703 47.826 0.00 0.00 0.00 4.79
4608 4625 4.037208 TCCCTCCGTTTCATATTACTCGTC 59.963 45.833 0.00 0.00 0.00 4.20
4609 4626 3.956199 TCCCTCCGTTTCATATTACTCGT 59.044 43.478 0.00 0.00 0.00 4.18
4610 4627 4.037684 ACTCCCTCCGTTTCATATTACTCG 59.962 45.833 0.00 0.00 0.00 4.18
4611 4628 5.532664 ACTCCCTCCGTTTCATATTACTC 57.467 43.478 0.00 0.00 0.00 2.59
4612 4629 5.895534 TGTACTCCCTCCGTTTCATATTACT 59.104 40.000 0.00 0.00 0.00 2.24
4613 4630 6.152932 TGTACTCCCTCCGTTTCATATTAC 57.847 41.667 0.00 0.00 0.00 1.89
4614 4631 6.989155 ATGTACTCCCTCCGTTTCATATTA 57.011 37.500 0.00 0.00 0.00 0.98
4615 4632 5.888982 ATGTACTCCCTCCGTTTCATATT 57.111 39.130 0.00 0.00 0.00 1.28
4616 4633 5.602978 AGAATGTACTCCCTCCGTTTCATAT 59.397 40.000 0.00 0.00 0.00 1.78
4617 4634 4.960469 AGAATGTACTCCCTCCGTTTCATA 59.040 41.667 0.00 0.00 0.00 2.15
4618 4635 3.775316 AGAATGTACTCCCTCCGTTTCAT 59.225 43.478 0.00 0.00 0.00 2.57
4619 4636 3.170717 AGAATGTACTCCCTCCGTTTCA 58.829 45.455 0.00 0.00 0.00 2.69
4620 4637 3.889520 AGAATGTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
4621 4638 5.750352 TTAAGAATGTACTCCCTCCGTTT 57.250 39.130 0.00 0.00 0.00 3.60
4622 4639 5.247792 AGTTTAAGAATGTACTCCCTCCGTT 59.752 40.000 0.00 0.00 0.00 4.44
4623 4640 4.776308 AGTTTAAGAATGTACTCCCTCCGT 59.224 41.667 0.00 0.00 0.00 4.69
4624 4641 5.340439 AGTTTAAGAATGTACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
4625 4642 7.421087 ACTAGTTTAAGAATGTACTCCCTCC 57.579 40.000 0.00 0.00 0.00 4.30
4627 4644 9.765295 TCTAACTAGTTTAAGAATGTACTCCCT 57.235 33.333 14.49 0.00 0.00 4.20
4683 4700 1.194121 AAGTTTGCAATGGGAGGGGC 61.194 55.000 0.00 0.00 0.00 5.80
4684 4701 1.351076 AAAGTTTGCAATGGGAGGGG 58.649 50.000 0.00 0.00 0.00 4.79
4709 4726 1.458398 TTACCACCGCATTGACATGG 58.542 50.000 0.00 0.00 36.46 3.66
4720 4737 5.734311 CGCTTTATCTATTGTTTACCACCG 58.266 41.667 0.00 0.00 0.00 4.94
4721 4738 5.065474 TGCGCTTTATCTATTGTTTACCACC 59.935 40.000 9.73 0.00 0.00 4.61
4785 4823 1.036707 CTCCCCCTCTCTCATTCGAC 58.963 60.000 0.00 0.00 0.00 4.20
4787 4825 1.118356 CCCTCCCCCTCTCTCATTCG 61.118 65.000 0.00 0.00 0.00 3.34
4788 4826 0.766288 CCCCTCCCCCTCTCTCATTC 60.766 65.000 0.00 0.00 0.00 2.67
4789 4827 1.319799 CCCCTCCCCCTCTCTCATT 59.680 63.158 0.00 0.00 0.00 2.57
4790 4828 2.731461 CCCCCTCCCCCTCTCTCAT 61.731 68.421 0.00 0.00 0.00 2.90
4791 4829 3.368501 CCCCCTCCCCCTCTCTCA 61.369 72.222 0.00 0.00 0.00 3.27
4902 5140 0.744874 CCTTTCTCCTATGGCGTCGA 59.255 55.000 0.00 0.00 0.00 4.20
4913 5151 2.436115 CGGCGTTCCCCTTTCTCC 60.436 66.667 0.00 0.00 0.00 3.71
4956 5194 0.837272 TTCCCCTTTCTCCTATGGCG 59.163 55.000 0.00 0.00 0.00 5.69
4957 5195 1.475213 CGTTCCCCTTTCTCCTATGGC 60.475 57.143 0.00 0.00 0.00 4.40
4958 5196 1.475213 GCGTTCCCCTTTCTCCTATGG 60.475 57.143 0.00 0.00 0.00 2.74
4959 5197 1.475213 GGCGTTCCCCTTTCTCCTATG 60.475 57.143 0.00 0.00 0.00 2.23
4960 5198 0.837940 GGCGTTCCCCTTTCTCCTAT 59.162 55.000 0.00 0.00 0.00 2.57
4961 5199 1.610554 CGGCGTTCCCCTTTCTCCTA 61.611 60.000 0.00 0.00 0.00 2.94
4962 5200 2.955881 CGGCGTTCCCCTTTCTCCT 61.956 63.158 0.00 0.00 0.00 3.69
4963 5201 2.436115 CGGCGTTCCCCTTTCTCC 60.436 66.667 0.00 0.00 0.00 3.71
4964 5202 3.125573 GCGGCGTTCCCCTTTCTC 61.126 66.667 9.37 0.00 0.00 2.87
4965 5203 4.717313 GGCGGCGTTCCCCTTTCT 62.717 66.667 9.37 0.00 0.00 2.52
4991 5229 2.738521 CCTGCTGTCCGGTTGTCG 60.739 66.667 0.00 0.00 38.88 4.35
4992 5230 1.668151 GACCTGCTGTCCGGTTGTC 60.668 63.158 0.00 0.00 38.09 3.18
4993 5231 1.696097 AAGACCTGCTGTCCGGTTGT 61.696 55.000 0.00 0.00 45.68 3.32
4994 5232 1.071471 AAGACCTGCTGTCCGGTTG 59.929 57.895 0.00 0.00 45.68 3.77
4995 5233 1.071471 CAAGACCTGCTGTCCGGTT 59.929 57.895 0.00 0.00 45.68 4.44
4996 5234 1.837051 TCAAGACCTGCTGTCCGGT 60.837 57.895 0.00 0.00 45.68 5.28
4997 5235 1.374758 GTCAAGACCTGCTGTCCGG 60.375 63.158 0.00 0.00 45.68 5.14
4998 5236 0.389166 GAGTCAAGACCTGCTGTCCG 60.389 60.000 3.72 0.00 45.68 4.79
4999 5237 0.972883 AGAGTCAAGACCTGCTGTCC 59.027 55.000 3.72 0.00 45.68 4.02
5000 5238 1.615883 TCAGAGTCAAGACCTGCTGTC 59.384 52.381 11.45 0.00 44.82 3.51
5001 5239 1.617850 CTCAGAGTCAAGACCTGCTGT 59.382 52.381 11.45 0.00 32.96 4.40
5002 5240 1.891811 TCTCAGAGTCAAGACCTGCTG 59.108 52.381 11.45 9.88 32.96 4.41
5003 5241 2.300956 TCTCAGAGTCAAGACCTGCT 57.699 50.000 11.45 0.00 32.96 4.24
5004 5242 2.418471 CCATCTCAGAGTCAAGACCTGC 60.418 54.545 11.45 0.00 32.96 4.85
5005 5243 2.168106 CCCATCTCAGAGTCAAGACCTG 59.832 54.545 0.00 10.53 33.68 4.00
5006 5244 2.465813 CCCATCTCAGAGTCAAGACCT 58.534 52.381 0.00 0.00 0.00 3.85
5030 5268 0.531974 CCATAATACACACGGCGGCT 60.532 55.000 13.24 0.00 0.00 5.52
5059 5298 0.979665 CAGATACATCATCCCCGGCT 59.020 55.000 0.00 0.00 33.75 5.52
5069 5308 1.956170 CCGGTGCGGCAGATACATC 60.956 63.158 1.18 0.00 41.17 3.06
5070 5309 2.108976 CCGGTGCGGCAGATACAT 59.891 61.111 1.18 0.00 41.17 2.29
5083 5322 2.124507 ATAGCACCACAAGCACCGGT 62.125 55.000 0.00 0.00 0.00 5.28
5084 5323 1.369091 GATAGCACCACAAGCACCGG 61.369 60.000 0.00 0.00 0.00 5.28
5085 5324 1.695893 CGATAGCACCACAAGCACCG 61.696 60.000 0.00 0.00 0.00 4.94
5086 5325 0.673644 ACGATAGCACCACAAGCACC 60.674 55.000 0.00 0.00 42.67 5.01
5087 5326 1.927174 CTACGATAGCACCACAAGCAC 59.073 52.381 0.00 0.00 42.67 4.40
5088 5327 2.293677 CTACGATAGCACCACAAGCA 57.706 50.000 0.00 0.00 42.67 3.91
5099 5338 7.892445 AAAATTTGTAAATGCGCTACGATAG 57.108 32.000 9.73 0.00 46.19 2.08
5140 5379 6.417635 CGAAGTTGTGTGAATGTGCTATTTTT 59.582 34.615 0.00 0.00 0.00 1.94
5141 5380 5.914635 CGAAGTTGTGTGAATGTGCTATTTT 59.085 36.000 0.00 0.00 0.00 1.82
5142 5381 5.451908 CGAAGTTGTGTGAATGTGCTATTT 58.548 37.500 0.00 0.00 0.00 1.40
5143 5382 4.083324 CCGAAGTTGTGTGAATGTGCTATT 60.083 41.667 0.00 0.00 0.00 1.73
5144 5383 3.436704 CCGAAGTTGTGTGAATGTGCTAT 59.563 43.478 0.00 0.00 0.00 2.97
5145 5384 2.805671 CCGAAGTTGTGTGAATGTGCTA 59.194 45.455 0.00 0.00 0.00 3.49
5146 5385 1.603802 CCGAAGTTGTGTGAATGTGCT 59.396 47.619 0.00 0.00 0.00 4.40
5147 5386 1.333619 ACCGAAGTTGTGTGAATGTGC 59.666 47.619 0.00 0.00 0.00 4.57
5148 5387 2.872245 AGACCGAAGTTGTGTGAATGTG 59.128 45.455 0.00 0.00 0.00 3.21
5149 5388 3.194005 AGACCGAAGTTGTGTGAATGT 57.806 42.857 0.00 0.00 0.00 2.71
5150 5389 4.690748 ACATAGACCGAAGTTGTGTGAATG 59.309 41.667 0.00 0.00 0.00 2.67
5151 5390 4.894784 ACATAGACCGAAGTTGTGTGAAT 58.105 39.130 0.00 0.00 0.00 2.57
5152 5391 4.330944 ACATAGACCGAAGTTGTGTGAA 57.669 40.909 0.00 0.00 0.00 3.18
5153 5392 4.055360 CAACATAGACCGAAGTTGTGTGA 58.945 43.478 0.00 0.00 37.25 3.58
5154 5393 3.363970 GCAACATAGACCGAAGTTGTGTG 60.364 47.826 0.00 0.00 42.37 3.82
5155 5394 2.806244 GCAACATAGACCGAAGTTGTGT 59.194 45.455 0.00 0.00 42.37 3.72
5156 5395 2.159627 GGCAACATAGACCGAAGTTGTG 59.840 50.000 0.00 0.00 42.37 3.33
5157 5396 2.423577 GGCAACATAGACCGAAGTTGT 58.576 47.619 0.00 0.00 42.37 3.32
5165 5404 5.945155 TGAAATTTTACGGCAACATAGACC 58.055 37.500 0.00 0.00 0.00 3.85
5166 5405 7.861176 TTTGAAATTTTACGGCAACATAGAC 57.139 32.000 0.00 0.00 0.00 2.59
5167 5406 8.300286 TGATTTGAAATTTTACGGCAACATAGA 58.700 29.630 0.00 0.00 0.00 1.98
5168 5407 8.459521 TGATTTGAAATTTTACGGCAACATAG 57.540 30.769 0.00 0.00 0.00 2.23
5169 5408 8.818141 TTGATTTGAAATTTTACGGCAACATA 57.182 26.923 0.00 0.00 0.00 2.29
5170 5409 7.721286 TTGATTTGAAATTTTACGGCAACAT 57.279 28.000 0.00 0.00 0.00 2.71
5171 5410 7.539712 TTTGATTTGAAATTTTACGGCAACA 57.460 28.000 0.00 0.00 0.00 3.33
5172 5411 9.444534 AATTTTGATTTGAAATTTTACGGCAAC 57.555 25.926 0.00 0.00 34.05 4.17
5198 5437 9.959749 CTTTTTGTACCTCAAGCAATACTTTAA 57.040 29.630 0.00 0.00 36.04 1.52
5199 5438 9.344772 TCTTTTTGTACCTCAAGCAATACTTTA 57.655 29.630 0.00 0.00 36.04 1.85
5200 5439 8.232913 TCTTTTTGTACCTCAAGCAATACTTT 57.767 30.769 0.00 0.00 36.04 2.66
5201 5440 7.817418 TCTTTTTGTACCTCAAGCAATACTT 57.183 32.000 0.00 0.00 40.05 2.24
5202 5441 7.817418 TTCTTTTTGTACCTCAAGCAATACT 57.183 32.000 0.00 0.00 37.35 2.12
5203 5442 8.865590 TTTTCTTTTTGTACCTCAAGCAATAC 57.134 30.769 0.00 0.00 37.35 1.89
5234 5473 9.817809 CAACTTATGGTATGTACTATTCAGTGT 57.182 33.333 0.00 0.00 36.14 3.55
5235 5474 9.261180 CCAACTTATGGTATGTACTATTCAGTG 57.739 37.037 0.00 0.00 44.85 3.66
5252 5491 5.351458 GGCCAGATTTAAAGCCAACTTATG 58.649 41.667 10.47 0.00 45.07 1.90
5253 5492 5.598416 GGCCAGATTTAAAGCCAACTTAT 57.402 39.130 10.47 0.00 45.07 1.73
5255 5494 3.961480 GGCCAGATTTAAAGCCAACTT 57.039 42.857 10.47 0.00 45.07 2.66
5260 5499 4.588528 TGATAATGGGCCAGATTTAAAGCC 59.411 41.667 13.78 7.50 44.99 4.35
5261 5500 5.068987 TGTGATAATGGGCCAGATTTAAAGC 59.931 40.000 13.78 0.00 0.00 3.51
5262 5501 6.713762 TGTGATAATGGGCCAGATTTAAAG 57.286 37.500 13.78 0.00 0.00 1.85
5263 5502 7.344093 TCAATGTGATAATGGGCCAGATTTAAA 59.656 33.333 13.78 0.00 0.00 1.52
5264 5503 6.838090 TCAATGTGATAATGGGCCAGATTTAA 59.162 34.615 13.78 0.00 0.00 1.52
5265 5504 6.372104 TCAATGTGATAATGGGCCAGATTTA 58.628 36.000 13.78 6.44 0.00 1.40
5266 5505 5.210430 TCAATGTGATAATGGGCCAGATTT 58.790 37.500 13.78 3.92 0.00 2.17
5267 5506 4.806892 TCAATGTGATAATGGGCCAGATT 58.193 39.130 13.78 4.77 0.00 2.40
5268 5507 4.458256 TCAATGTGATAATGGGCCAGAT 57.542 40.909 13.78 8.03 0.00 2.90
5269 5508 3.949586 TCAATGTGATAATGGGCCAGA 57.050 42.857 13.78 2.18 0.00 3.86
5270 5509 3.893200 ACATCAATGTGATAATGGGCCAG 59.107 43.478 13.78 0.00 40.03 4.85
5271 5510 3.890756 GACATCAATGTGATAATGGGCCA 59.109 43.478 9.61 9.61 41.95 5.36
5272 5511 3.890756 TGACATCAATGTGATAATGGGCC 59.109 43.478 0.00 0.00 41.95 5.80
5273 5512 5.518848 TTGACATCAATGTGATAATGGGC 57.481 39.130 0.00 0.00 41.95 5.36
5274 5513 8.951787 AATTTTGACATCAATGTGATAATGGG 57.048 30.769 0.00 0.00 41.95 4.00
5287 5526 9.666626 GATGCAAAAATGAAAATTTTGACATCA 57.333 25.926 24.28 0.00 45.96 3.07
5288 5527 9.887406 AGATGCAAAAATGAAAATTTTGACATC 57.113 25.926 23.20 23.20 45.96 3.06
5289 5528 9.887406 GAGATGCAAAAATGAAAATTTTGACAT 57.113 25.926 8.47 14.62 45.96 3.06
5290 5529 8.063038 CGAGATGCAAAAATGAAAATTTTGACA 58.937 29.630 8.47 1.23 45.96 3.58
5291 5530 8.063630 ACGAGATGCAAAAATGAAAATTTTGAC 58.936 29.630 8.47 0.00 45.96 3.18
5292 5531 8.063038 CACGAGATGCAAAAATGAAAATTTTGA 58.937 29.630 8.47 0.00 45.96 2.69
5293 5532 8.194891 CACGAGATGCAAAAATGAAAATTTTG 57.805 30.769 8.47 7.23 45.87 2.44
5310 5549 3.454042 TTCGAAACATTGCACGAGATG 57.546 42.857 0.00 0.00 36.22 2.90
5311 5550 4.685169 AATTCGAAACATTGCACGAGAT 57.315 36.364 0.00 0.00 36.22 2.75
5312 5551 4.481930 AAATTCGAAACATTGCACGAGA 57.518 36.364 0.00 0.00 36.22 4.04
5313 5552 4.674662 TCAAAATTCGAAACATTGCACGAG 59.325 37.500 0.00 0.00 36.22 4.18
5314 5553 4.602006 TCAAAATTCGAAACATTGCACGA 58.398 34.783 0.00 0.00 0.00 4.35
5315 5554 4.945292 TCAAAATTCGAAACATTGCACG 57.055 36.364 0.00 0.00 0.00 5.34
5316 5555 6.896088 GCATATCAAAATTCGAAACATTGCAC 59.104 34.615 0.00 0.00 0.00 4.57
5317 5556 6.589139 TGCATATCAAAATTCGAAACATTGCA 59.411 30.769 0.00 7.32 0.00 4.08
5318 5557 6.991655 TGCATATCAAAATTCGAAACATTGC 58.008 32.000 0.00 4.82 0.00 3.56
5319 5558 9.976255 AATTGCATATCAAAATTCGAAACATTG 57.024 25.926 0.00 8.17 38.34 2.82
5325 5564 9.636879 TCAGAAAATTGCATATCAAAATTCGAA 57.363 25.926 0.00 0.00 37.88 3.71
5326 5565 9.075519 GTCAGAAAATTGCATATCAAAATTCGA 57.924 29.630 0.00 0.00 37.88 3.71
5327 5566 8.862074 TGTCAGAAAATTGCATATCAAAATTCG 58.138 29.630 0.00 0.00 37.88 3.34
5330 5569 9.491675 TGTTGTCAGAAAATTGCATATCAAAAT 57.508 25.926 0.00 0.00 38.34 1.82
5331 5570 8.883954 TGTTGTCAGAAAATTGCATATCAAAA 57.116 26.923 0.00 0.00 38.34 2.44
5332 5571 9.142515 GATGTTGTCAGAAAATTGCATATCAAA 57.857 29.630 0.00 0.00 38.34 2.69
5333 5572 7.760794 GGATGTTGTCAGAAAATTGCATATCAA 59.239 33.333 0.00 0.00 39.32 2.57
5334 5573 7.259882 GGATGTTGTCAGAAAATTGCATATCA 58.740 34.615 0.00 0.00 0.00 2.15
5335 5574 6.698766 GGGATGTTGTCAGAAAATTGCATATC 59.301 38.462 0.00 0.00 0.00 1.63
5336 5575 6.381994 AGGGATGTTGTCAGAAAATTGCATAT 59.618 34.615 0.00 0.00 0.00 1.78
5337 5576 5.716228 AGGGATGTTGTCAGAAAATTGCATA 59.284 36.000 0.00 0.00 0.00 3.14
5338 5577 4.529377 AGGGATGTTGTCAGAAAATTGCAT 59.471 37.500 0.00 0.00 0.00 3.96
5339 5578 3.896888 AGGGATGTTGTCAGAAAATTGCA 59.103 39.130 0.00 0.00 0.00 4.08
5340 5579 4.525912 AGGGATGTTGTCAGAAAATTGC 57.474 40.909 0.00 0.00 0.00 3.56
5341 5580 6.088016 TCAAGGGATGTTGTCAGAAAATTG 57.912 37.500 0.00 0.00 0.00 2.32
5342 5581 6.694447 CATCAAGGGATGTTGTCAGAAAATT 58.306 36.000 0.00 0.00 44.79 1.82
5343 5582 6.276832 CATCAAGGGATGTTGTCAGAAAAT 57.723 37.500 0.00 0.00 44.79 1.82
5344 5583 5.710513 CATCAAGGGATGTTGTCAGAAAA 57.289 39.130 0.00 0.00 44.79 2.29
5356 5595 5.191426 CAGATTGACTCAACATCAAGGGAT 58.809 41.667 0.00 0.00 39.36 3.85
5357 5596 4.582869 CAGATTGACTCAACATCAAGGGA 58.417 43.478 0.00 0.00 39.36 4.20
5358 5597 3.128242 GCAGATTGACTCAACATCAAGGG 59.872 47.826 0.00 0.00 39.36 3.95
5359 5598 4.008330 AGCAGATTGACTCAACATCAAGG 58.992 43.478 0.00 0.00 39.36 3.61
5360 5599 6.035866 GTCTAGCAGATTGACTCAACATCAAG 59.964 42.308 0.00 0.00 39.36 3.02
5361 5600 5.871524 GTCTAGCAGATTGACTCAACATCAA 59.128 40.000 0.00 0.00 40.25 2.57
5362 5601 5.186603 AGTCTAGCAGATTGACTCAACATCA 59.813 40.000 0.00 0.00 39.42 3.07
5363 5602 5.659463 AGTCTAGCAGATTGACTCAACATC 58.341 41.667 0.00 0.00 39.42 3.06
5364 5603 5.674052 AGTCTAGCAGATTGACTCAACAT 57.326 39.130 0.00 0.00 39.42 2.71
5365 5604 5.474578 AAGTCTAGCAGATTGACTCAACA 57.525 39.130 3.15 0.00 42.23 3.33
5366 5605 6.793492 AAAAGTCTAGCAGATTGACTCAAC 57.207 37.500 3.15 0.00 42.23 3.18
5367 5606 9.507329 AATAAAAAGTCTAGCAGATTGACTCAA 57.493 29.630 3.15 0.00 42.23 3.02
5368 5607 9.507329 AAATAAAAAGTCTAGCAGATTGACTCA 57.493 29.630 3.15 0.00 42.23 3.41
5394 5633 9.907576 CGTAGTGCATTTTAAAATGTTTCAAAA 57.092 25.926 31.43 15.62 45.77 2.44
5395 5634 9.088512 ACGTAGTGCATTTTAAAATGTTTCAAA 57.911 25.926 31.43 16.13 45.77 2.69
5396 5635 8.635877 ACGTAGTGCATTTTAAAATGTTTCAA 57.364 26.923 31.43 16.93 45.77 2.69
5416 5655 2.431942 GGTGCACCGGACACGTAG 60.432 66.667 22.49 0.00 38.98 3.51
5426 5665 1.014352 GAATGTATCACCGGTGCACC 58.986 55.000 30.25 26.78 0.00 5.01
5427 5666 1.014352 GGAATGTATCACCGGTGCAC 58.986 55.000 30.25 26.75 0.00 4.57
5428 5667 0.107410 GGGAATGTATCACCGGTGCA 60.107 55.000 30.25 21.76 0.00 4.57
5429 5668 0.180406 AGGGAATGTATCACCGGTGC 59.820 55.000 30.25 16.49 28.52 5.01
5430 5669 1.762957 AGAGGGAATGTATCACCGGTG 59.237 52.381 29.26 29.26 28.52 4.94
5431 5670 2.176247 AGAGGGAATGTATCACCGGT 57.824 50.000 0.00 0.00 28.52 5.28
5432 5671 3.231818 AGTAGAGGGAATGTATCACCGG 58.768 50.000 0.00 0.00 28.52 5.28
5433 5672 4.082679 GCTAGTAGAGGGAATGTATCACCG 60.083 50.000 0.00 0.00 28.52 4.94
5434 5673 4.221041 GGCTAGTAGAGGGAATGTATCACC 59.779 50.000 0.00 0.00 28.52 4.02
5435 5674 5.081032 AGGCTAGTAGAGGGAATGTATCAC 58.919 45.833 0.00 0.00 0.00 3.06
5436 5675 5.340891 AGGCTAGTAGAGGGAATGTATCA 57.659 43.478 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.