Multiple sequence alignment - TraesCS5A01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G294600 chr5A 100.000 6549 0 0 1 6549 503517062 503523610 0.000000e+00 12094.0
1 TraesCS5A01G294600 chr5D 94.658 5597 213 31 1 5564 398524039 398529582 0.000000e+00 8600.0
2 TraesCS5A01G294600 chr5D 81.325 996 86 41 5599 6501 398529581 398530569 0.000000e+00 717.0
3 TraesCS5A01G294600 chr5B 94.293 5239 225 31 1 5222 478475292 478480473 0.000000e+00 7950.0
4 TraesCS5A01G294600 chr5B 86.737 950 64 23 5219 6132 478480518 478481441 0.000000e+00 1000.0
5 TraesCS5A01G294600 chr5B 78.247 308 24 22 6235 6501 478481832 478482137 2.440000e-34 158.0
6 TraesCS5A01G294600 chr4D 87.393 1047 118 11 4177 5221 1652601 1651567 0.000000e+00 1190.0
7 TraesCS5A01G294600 chr4D 78.109 1777 282 46 3524 5221 499893182 499891434 0.000000e+00 1027.0
8 TraesCS5A01G294600 chr4D 87.737 791 87 8 4174 4964 499902988 499902208 0.000000e+00 915.0
9 TraesCS5A01G294600 chr4D 86.885 793 94 5 4439 5221 1641951 1641159 0.000000e+00 880.0
10 TraesCS5A01G294600 chr4D 82.851 449 58 16 2422 2866 499904615 499904182 1.030000e-102 385.0
11 TraesCS5A01G294600 chr4D 82.913 357 45 12 2407 2756 1654413 1654066 2.290000e-79 307.0
12 TraesCS5A01G294600 chr4D 86.957 253 29 4 5324 5572 1651060 1650808 1.390000e-71 281.0
13 TraesCS5A01G294600 chr4D 86.853 251 28 3 5324 5569 499901505 499901255 6.470000e-70 276.0
14 TraesCS5A01G294600 chr4D 74.515 412 85 16 1761 2158 1655336 1654931 1.890000e-35 161.0
15 TraesCS5A01G294600 chr4D 75.342 365 71 16 1801 2158 1645712 1645360 2.440000e-34 158.0
16 TraesCS5A01G294600 chr4B 87.226 1049 119 13 4174 5219 2220170 2219134 0.000000e+00 1181.0
17 TraesCS5A01G294600 chr4B 80.148 539 82 21 2407 2934 643021609 643022133 4.790000e-101 379.0
18 TraesCS5A01G294600 chr4B 74.854 855 143 30 3582 4389 2210666 2209837 6.330000e-85 326.0
19 TraesCS5A01G294600 chr4B 74.854 855 143 30 3582 4389 2240656 2239827 6.330000e-85 326.0
20 TraesCS5A01G294600 chr4B 78.022 546 89 21 2407 2934 2221786 2221254 1.370000e-81 315.0
21 TraesCS5A01G294600 chr4B 87.649 251 26 4 5324 5569 2218591 2218341 2.990000e-73 287.0
22 TraesCS5A01G294600 chr4B 85.772 246 32 3 5324 5566 643024894 643025139 2.340000e-64 257.0
23 TraesCS5A01G294600 chr4B 76.154 390 73 15 1733 2116 2227210 2226835 3.120000e-43 187.0
24 TraesCS5A01G294600 chr4B 76.154 390 73 15 1733 2116 2244325 2243950 3.120000e-43 187.0
25 TraesCS5A01G294600 chr4B 93.220 59 2 2 6412 6469 643147729 643147786 1.170000e-12 86.1
26 TraesCS5A01G294600 chr4A 81.548 1382 199 28 3891 5221 603340735 603342111 0.000000e+00 1088.0
27 TraesCS5A01G294600 chr4A 85.366 328 38 6 4281 4607 603284782 603285100 1.360000e-86 331.0
28 TraesCS5A01G294600 chr4A 87.097 248 27 4 5324 5566 603286176 603286423 6.470000e-70 276.0
29 TraesCS5A01G294600 chr4A 74.817 409 79 19 1761 2158 603333883 603334278 5.250000e-36 163.0
30 TraesCS5A01G294600 chrUn 74.056 1218 209 46 3524 4662 303234321 303235510 3.680000e-107 399.0
31 TraesCS5A01G294600 chr2D 83.234 167 21 4 1730 1896 32292099 32291940 5.290000e-31 147.0
32 TraesCS5A01G294600 chr2A 82.635 167 22 4 1730 1896 34516557 34516398 2.460000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G294600 chr5A 503517062 503523610 6548 False 12094.000000 12094 100.000000 1 6549 1 chr5A.!!$F1 6548
1 TraesCS5A01G294600 chr5D 398524039 398530569 6530 False 4658.500000 8600 87.991500 1 6501 2 chr5D.!!$F1 6500
2 TraesCS5A01G294600 chr5B 478475292 478482137 6845 False 3036.000000 7950 86.425667 1 6501 3 chr5B.!!$F1 6500
3 TraesCS5A01G294600 chr4D 499891434 499893182 1748 True 1027.000000 1027 78.109000 3524 5221 1 chr4D.!!$R1 1697
4 TraesCS5A01G294600 chr4D 499901255 499904615 3360 True 525.333333 915 85.813667 2422 5569 3 chr4D.!!$R4 3147
5 TraesCS5A01G294600 chr4D 1641159 1645712 4553 True 519.000000 880 81.113500 1801 5221 2 chr4D.!!$R2 3420
6 TraesCS5A01G294600 chr4D 1650808 1655336 4528 True 484.750000 1190 82.944500 1761 5572 4 chr4D.!!$R3 3811
7 TraesCS5A01G294600 chr4B 2218341 2221786 3445 True 594.333333 1181 84.299000 2407 5569 3 chr4B.!!$R3 3162
8 TraesCS5A01G294600 chr4B 2209837 2210666 829 True 326.000000 326 74.854000 3582 4389 1 chr4B.!!$R1 807
9 TraesCS5A01G294600 chr4B 643021609 643025139 3530 False 318.000000 379 82.960000 2407 5566 2 chr4B.!!$F2 3159
10 TraesCS5A01G294600 chr4B 2239827 2244325 4498 True 256.500000 326 75.504000 1733 4389 2 chr4B.!!$R4 2656
11 TraesCS5A01G294600 chr4A 603340735 603342111 1376 False 1088.000000 1088 81.548000 3891 5221 1 chr4A.!!$F2 1330
12 TraesCS5A01G294600 chr4A 603284782 603286423 1641 False 303.500000 331 86.231500 4281 5566 2 chr4A.!!$F3 1285
13 TraesCS5A01G294600 chrUn 303234321 303235510 1189 False 399.000000 399 74.056000 3524 4662 1 chrUn.!!$F1 1138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.322546 GAGGGCTTCGGTTCCAATGT 60.323 55.000 0.00 0.00 0.00 2.71 F
453 458 0.382873 CAGCTGTGCAAGAACAAGCA 59.617 50.000 5.25 0.00 38.65 3.91 F
808 820 0.605319 CTTGTCGCCTTGGCTACCAA 60.605 55.000 12.71 9.59 41.69 3.67 F
1008 1026 1.003112 GTGGTTCCACATGGCCGTA 60.003 57.895 16.01 0.00 36.97 4.02 F
1647 1671 1.082690 GCAGCAAGCAGAAGTAGTCC 58.917 55.000 0.00 0.00 44.79 3.85 F
2511 4150 1.135024 CATGCACAGGCCAAACCATAC 60.135 52.381 5.01 0.00 43.14 2.39 F
2800 4484 0.982852 CCCTATCACTGCCACCAGGA 60.983 60.000 0.00 0.00 43.53 3.86 F
3719 6597 1.509995 GCGCTCGAAAAAGGAAGCG 60.510 57.895 10.93 10.93 46.69 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1245 0.824109 CGACATACAGCTTCCCTCCA 59.176 55.000 0.00 0.00 0.00 3.86 R
1573 1597 1.202348 GCGAAACAGGGGATGGAAAAG 59.798 52.381 0.00 0.00 0.00 2.27 R
2494 4133 0.527565 CAGTATGGTTTGGCCTGTGC 59.472 55.000 3.32 0.00 38.35 4.57 R
2495 4134 0.527565 GCAGTATGGTTTGGCCTGTG 59.472 55.000 3.32 0.00 38.35 3.66 R
2559 4198 2.159043 ACTTAGGGATGCATGACACTCG 60.159 50.000 2.46 0.00 0.00 4.18 R
3909 6897 1.968493 ACTCTCCCGTGCTTTGAACTA 59.032 47.619 0.00 0.00 0.00 2.24 R
4030 7028 5.711506 TCCAATTCTGCTCTTTGCTCATTTA 59.288 36.000 0.00 0.00 43.37 1.40 R
5566 9408 0.917259 CTAACACGACTGCGCAGATC 59.083 55.000 42.03 30.52 42.48 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.993220 GGCGCCAAATTTAAAACAGAGG 59.007 45.455 24.80 0.00 0.00 3.69
75 76 0.322546 GAGGGCTTCGGTTCCAATGT 60.323 55.000 0.00 0.00 0.00 2.71
99 100 1.539065 CCCTAACCTATGCTGACAGCG 60.539 57.143 22.00 10.43 46.26 5.18
100 101 1.212616 CTAACCTATGCTGACAGCGC 58.787 55.000 22.00 0.00 46.26 5.92
111 112 3.317993 TGCTGACAGCGCAGTTATATAGA 59.682 43.478 22.00 0.00 46.26 1.98
149 151 1.345741 AGGCATCACTCACCGGATATG 59.654 52.381 9.46 0.00 0.00 1.78
153 155 2.602257 TCACTCACCGGATATGCTTG 57.398 50.000 9.46 0.00 0.00 4.01
226 228 4.097741 AGTTCAGCAACATTGTTACTTGCA 59.902 37.500 12.37 0.00 42.32 4.08
309 314 0.606096 TGAGCTGACCGATCGGAAAA 59.394 50.000 39.55 22.01 38.96 2.29
323 328 1.001181 CGGAAAAGTTGACCCCGTCTA 59.999 52.381 0.00 0.00 35.83 2.59
345 350 2.109774 CCCAGCAGAGTCTTGAGATCT 58.890 52.381 0.00 0.00 0.00 2.75
352 357 3.448301 CAGAGTCTTGAGATCTCTGGCTT 59.552 47.826 22.95 6.78 46.35 4.35
447 452 1.900016 CTGGCCAGCTGTGCAAGAA 60.900 57.895 22.33 7.83 30.97 2.52
453 458 0.382873 CAGCTGTGCAAGAACAAGCA 59.617 50.000 5.25 0.00 38.65 3.91
499 508 5.105554 GCTCTCTGTTGACTGAAGGAGATAA 60.106 44.000 9.78 0.00 30.93 1.75
591 600 2.430367 GGCCTCACGTTGAAGGGT 59.570 61.111 9.74 0.00 0.00 4.34
593 602 1.515521 GGCCTCACGTTGAAGGGTTG 61.516 60.000 9.74 0.00 0.00 3.77
710 719 3.951306 TCTTGTTTGTTTCTGCATCACG 58.049 40.909 0.00 0.00 0.00 4.35
721 730 3.402110 TCTGCATCACGTTCACAGAAAT 58.598 40.909 5.19 0.00 34.59 2.17
804 813 2.046314 GCCTTGTCGCCTTGGCTA 60.046 61.111 10.12 0.00 41.92 3.93
808 820 0.605319 CTTGTCGCCTTGGCTACCAA 60.605 55.000 12.71 9.59 41.69 3.67
830 842 4.565022 ACAACAACAACAAACTCAAAGGG 58.435 39.130 0.00 0.00 0.00 3.95
910 922 5.008811 GCTTTCTCTCGTGGTAGCTAGATAA 59.991 44.000 0.00 0.00 0.00 1.75
934 947 7.138692 ACATATGCACTTTTTCACTTCTCTC 57.861 36.000 1.58 0.00 0.00 3.20
985 1003 3.774734 TCTTCTCTGGTGGTAGCTAACA 58.225 45.455 7.58 7.58 0.00 2.41
986 1004 4.353777 TCTTCTCTGGTGGTAGCTAACAT 58.646 43.478 15.97 0.00 0.00 2.71
1008 1026 1.003112 GTGGTTCCACATGGCCGTA 60.003 57.895 16.01 0.00 36.97 4.02
1023 1041 2.496817 GTAGTCAGCAGAGCCCGG 59.503 66.667 0.00 0.00 0.00 5.73
1147 1165 4.039357 CGTCGTCGTCCAGTGCCT 62.039 66.667 0.00 0.00 0.00 4.75
1206 1224 2.517875 GAGGCCGCCATCTTGCAT 60.518 61.111 13.15 0.00 0.00 3.96
1227 1245 2.103601 TGATGCTGATGATGATGACGGT 59.896 45.455 0.00 0.00 0.00 4.83
1387 1405 1.660242 AGGTAAAAGGGTCCGGCTTA 58.340 50.000 0.00 0.00 0.00 3.09
1507 1530 4.149046 GCACTTCAGTCGTTTCAGAAGTAG 59.851 45.833 6.37 3.73 46.34 2.57
1528 1552 4.850680 AGTTTGCGTATCTATGGGGAAAA 58.149 39.130 0.00 0.00 0.00 2.29
1573 1597 3.600448 TGATCCCCATCTCCATTTTCC 57.400 47.619 0.00 0.00 0.00 3.13
1647 1671 1.082690 GCAGCAAGCAGAAGTAGTCC 58.917 55.000 0.00 0.00 44.79 3.85
1651 1675 2.903135 AGCAAGCAGAAGTAGTCCTCTT 59.097 45.455 0.00 0.00 0.00 2.85
1897 2735 5.509840 GCAGAGTTTCTCTCAAGGTCAGTTA 60.510 44.000 0.00 0.00 44.98 2.24
2213 3135 3.676049 CGTAGAGCAAAGCACCATGAGTA 60.676 47.826 0.00 0.00 0.00 2.59
2232 3154 8.642885 CATGAGTAATGTAATTAGATGCTCGAC 58.357 37.037 15.95 4.55 39.94 4.20
2234 3156 7.862873 TGAGTAATGTAATTAGATGCTCGACTG 59.137 37.037 15.95 0.00 39.94 3.51
2235 3157 5.914085 AATGTAATTAGATGCTCGACTGC 57.086 39.130 0.00 0.00 32.46 4.40
2236 3158 4.655762 TGTAATTAGATGCTCGACTGCT 57.344 40.909 0.00 0.00 0.00 4.24
2293 3231 2.158827 TCTGCTGTTCTAACAAGTGGCA 60.159 45.455 7.13 7.13 38.66 4.92
2330 3377 6.313905 AGCAGAACCATTTAGTCAATACTTCG 59.686 38.462 0.00 0.00 37.15 3.79
2344 3391 5.642063 TCAATACTTCGCTTAAAACTCCCAG 59.358 40.000 0.00 0.00 0.00 4.45
2485 4124 2.221517 CCAAAATCAAAAGTTGCAGCCG 59.778 45.455 0.00 0.00 0.00 5.52
2511 4150 1.135024 CATGCACAGGCCAAACCATAC 60.135 52.381 5.01 0.00 43.14 2.39
2559 4198 3.445805 AGACTCTTGCTTGCTCTAGGTAC 59.554 47.826 0.00 0.00 0.00 3.34
2800 4484 0.982852 CCCTATCACTGCCACCAGGA 60.983 60.000 0.00 0.00 43.53 3.86
2879 4563 4.020218 CAGTCAGTTATCCCTTGTCTGGAA 60.020 45.833 0.00 0.00 35.03 3.53
2909 4593 5.559035 GCAGACAGTGTAGAAAACATGTCAC 60.559 44.000 0.00 1.50 42.66 3.67
3148 4854 2.887152 GGATTTGGACAGTATGGATGGC 59.113 50.000 0.00 0.00 43.62 4.40
3179 4885 2.287427 CCTGTTTCAGTTGCAAGCTCTG 60.287 50.000 0.00 4.06 0.00 3.35
3180 4886 2.615447 CTGTTTCAGTTGCAAGCTCTGA 59.385 45.455 12.77 12.77 36.59 3.27
3181 4887 3.016031 TGTTTCAGTTGCAAGCTCTGAA 58.984 40.909 20.91 20.91 43.44 3.02
3719 6597 1.509995 GCGCTCGAAAAAGGAAGCG 60.510 57.895 10.93 10.93 46.69 4.68
3906 6894 8.658499 TCTCTTAAGTAAGTGAACTGTTTTCC 57.342 34.615 1.63 0.00 34.15 3.13
3909 6897 8.044908 TCTTAAGTAAGTGAACTGTTTTCCTGT 58.955 33.333 1.63 0.00 34.93 4.00
4030 7028 1.963338 GCAACGAGCTGCAGAAGGT 60.963 57.895 20.43 8.08 42.17 3.50
5566 9408 6.220201 ACCGTGATTTTTAACCTTCCATTTG 58.780 36.000 0.00 0.00 0.00 2.32
5572 9414 7.818930 TGATTTTTAACCTTCCATTTGATCTGC 59.181 33.333 0.00 0.00 0.00 4.26
5573 9415 4.963276 TTAACCTTCCATTTGATCTGCG 57.037 40.909 0.00 0.00 0.00 5.18
5579 9421 0.027194 CCATTTGATCTGCGCAGTCG 59.973 55.000 34.70 13.30 39.07 4.18
5587 9429 1.080772 CTGCGCAGTCGTGTTAGGA 60.081 57.895 29.24 0.00 38.14 2.94
5591 9433 1.060713 CGCAGTCGTGTTAGGAAGTG 58.939 55.000 0.00 0.00 0.00 3.16
5683 9528 1.415659 CTCAATGTTTGGGCCCACAAA 59.584 47.619 28.70 15.47 37.96 2.83
5773 9624 4.883021 AGAGAGAGTGGGTATTCAGGTA 57.117 45.455 0.00 0.00 0.00 3.08
5830 9685 4.041567 TCCCTCTCAGTTATGCAAAGTTGA 59.958 41.667 0.00 0.00 0.00 3.18
5850 9705 4.738124 TGAGAGTTAGAGTCAAATCAGCG 58.262 43.478 0.00 0.00 0.00 5.18
5858 9713 1.002624 TCAAATCAGCGTGGTCCCC 60.003 57.895 0.00 0.00 0.00 4.81
5862 9717 0.178975 AATCAGCGTGGTCCCCAAAA 60.179 50.000 0.00 0.00 34.18 2.44
5890 9745 9.539825 AACTACAGTAAATGAGCAATCAGATAG 57.460 33.333 0.00 0.00 0.00 2.08
5907 9762 2.130272 TAGATCAGAGCACAGACGGT 57.870 50.000 0.00 0.00 0.00 4.83
5949 9804 4.209080 TCATGAATTAGCTATGCACGTTCG 59.791 41.667 0.00 0.00 0.00 3.95
5962 9817 2.222596 GCACGTTCGATTCTTACTGCAG 60.223 50.000 13.48 13.48 0.00 4.41
5993 9874 5.694910 GCATGCCATTTTTCAGGAGATAATG 59.305 40.000 6.36 0.00 0.00 1.90
5994 9875 6.461927 GCATGCCATTTTTCAGGAGATAATGA 60.462 38.462 6.36 0.00 32.32 2.57
5996 9877 5.068198 TGCCATTTTTCAGGAGATAATGAGC 59.932 40.000 0.00 0.00 32.32 4.26
6000 9884 6.500684 TTTTTCAGGAGATAATGAGCACAC 57.499 37.500 0.00 0.00 0.00 3.82
6016 9900 6.956047 TGAGCACACTATTATCTGTACTACG 58.044 40.000 0.00 0.00 0.00 3.51
6017 9901 6.541278 TGAGCACACTATTATCTGTACTACGT 59.459 38.462 0.00 0.00 0.00 3.57
6018 9902 6.957150 AGCACACTATTATCTGTACTACGTC 58.043 40.000 0.00 0.00 0.00 4.34
6028 9912 1.171308 GTACTACGTCTGCCAGGTCA 58.829 55.000 0.00 0.00 0.00 4.02
6065 9949 4.110482 GGCAAAATCATTTAGCTGCTCTG 58.890 43.478 4.91 2.80 0.00 3.35
6069 9953 5.814764 AAATCATTTAGCTGCTCTGACTG 57.185 39.130 4.91 0.00 0.00 3.51
6096 9983 4.278310 ACAATTTAGCCCCAATCCACTAC 58.722 43.478 0.00 0.00 0.00 2.73
6117 10005 4.711399 ACCGCTAACTTCAAAGTAAAGGT 58.289 39.130 0.00 1.95 38.57 3.50
6124 10012 5.857822 ACTTCAAAGTAAAGGTGTATCGC 57.142 39.130 0.00 0.00 37.52 4.58
6132 10020 5.488341 AGTAAAGGTGTATCGCTTTCACAT 58.512 37.500 0.00 0.00 34.27 3.21
6133 10021 5.938125 AGTAAAGGTGTATCGCTTTCACATT 59.062 36.000 0.00 0.00 37.62 2.71
6134 10022 4.946784 AAGGTGTATCGCTTTCACATTC 57.053 40.909 0.00 0.00 32.06 2.67
6150 10062 2.959707 ACATTCCCAAACAAACGGCTTA 59.040 40.909 0.00 0.00 0.00 3.09
6154 10066 2.359531 TCCCAAACAAACGGCTTACAAG 59.640 45.455 0.00 0.00 0.00 3.16
6158 10070 3.963383 AACAAACGGCTTACAAGACAG 57.037 42.857 0.00 0.00 31.90 3.51
6168 10080 3.873952 GCTTACAAGACAGGATTAGGCAG 59.126 47.826 0.00 0.00 0.00 4.85
6187 10099 1.209019 AGTTGCATGCCAAACAACCAA 59.791 42.857 16.68 0.00 43.68 3.67
6195 10107 2.224402 TGCCAAACAACCAATTAAGGGC 60.224 45.455 0.00 0.00 39.29 5.19
6203 10115 2.859951 ACCAATTAAGGGCCTACTCCT 58.140 47.619 6.41 0.00 35.88 3.69
6204 10116 2.778270 ACCAATTAAGGGCCTACTCCTC 59.222 50.000 6.41 0.00 32.59 3.71
6205 10117 2.106684 CCAATTAAGGGCCTACTCCTCC 59.893 54.545 6.41 0.00 32.59 4.30
6257 10437 0.252375 AGAACATGGGCTGGGCATTT 60.252 50.000 0.00 0.00 0.00 2.32
6298 10478 1.151668 CCAGAAGCTGACCACGAAAG 58.848 55.000 0.00 0.00 32.44 2.62
6323 10508 1.756538 GGAGAGGAGCAGAGAAGAAGG 59.243 57.143 0.00 0.00 0.00 3.46
6339 10524 1.760029 GAAGGCTTACAGAGGAGGGAG 59.240 57.143 0.00 0.00 0.00 4.30
6341 10526 0.325765 GGCTTACAGAGGAGGGAGGT 60.326 60.000 0.00 0.00 0.00 3.85
6342 10527 0.827368 GCTTACAGAGGAGGGAGGTG 59.173 60.000 0.00 0.00 0.00 4.00
6343 10528 1.619977 GCTTACAGAGGAGGGAGGTGA 60.620 57.143 0.00 0.00 0.00 4.02
6346 10531 0.489567 ACAGAGGAGGGAGGTGAAGT 59.510 55.000 0.00 0.00 0.00 3.01
6348 10533 0.787084 AGAGGAGGGAGGTGAAGTGA 59.213 55.000 0.00 0.00 0.00 3.41
6359 10566 1.620819 GGTGAAGTGAAGCAGAGAGGA 59.379 52.381 0.00 0.00 0.00 3.71
6366 10573 3.257127 AGTGAAGCAGAGAGGACTTGTAC 59.743 47.826 0.00 0.00 0.00 2.90
6367 10574 3.257127 GTGAAGCAGAGAGGACTTGTACT 59.743 47.826 0.00 0.00 0.00 2.73
6368 10575 4.459685 GTGAAGCAGAGAGGACTTGTACTA 59.540 45.833 0.00 0.00 0.00 1.82
6369 10576 4.702612 TGAAGCAGAGAGGACTTGTACTAG 59.297 45.833 2.56 2.56 0.00 2.57
6370 10577 4.310022 AGCAGAGAGGACTTGTACTAGT 57.690 45.455 9.83 9.83 0.00 2.57
6371 10578 4.266714 AGCAGAGAGGACTTGTACTAGTC 58.733 47.826 23.99 23.99 43.05 2.59
6372 10579 4.011023 GCAGAGAGGACTTGTACTAGTCA 58.989 47.826 29.93 0.00 45.07 3.41
6373 10580 4.142556 GCAGAGAGGACTTGTACTAGTCAC 60.143 50.000 29.93 23.66 45.07 3.67
6374 10581 5.250200 CAGAGAGGACTTGTACTAGTCACT 58.750 45.833 29.93 26.67 45.07 3.41
6387 10594 5.230323 ACTAGTCACTAGTCAGTCAGTCA 57.770 43.478 12.06 0.00 42.87 3.41
6408 10615 1.202915 TCCATGAGAAAGGCAAGCACA 60.203 47.619 0.00 0.00 0.00 4.57
6410 10617 0.886563 ATGAGAAAGGCAAGCACAGC 59.113 50.000 0.00 0.00 0.00 4.40
6411 10618 0.466007 TGAGAAAGGCAAGCACAGCA 60.466 50.000 0.00 0.00 0.00 4.41
6412 10619 0.039708 GAGAAAGGCAAGCACAGCAC 60.040 55.000 0.00 0.00 0.00 4.40
6416 10623 3.292936 GGCAAGCACAGCACAGCT 61.293 61.111 0.00 0.00 44.31 4.24
6417 10624 1.968017 GGCAAGCACAGCACAGCTA 60.968 57.895 0.00 0.00 40.90 3.32
6419 10626 1.500844 CAAGCACAGCACAGCTAGC 59.499 57.895 6.62 6.62 40.90 3.42
6420 10627 0.954449 CAAGCACAGCACAGCTAGCT 60.954 55.000 12.68 12.68 46.09 3.32
6421 10628 0.673022 AAGCACAGCACAGCTAGCTC 60.673 55.000 16.15 3.70 44.37 4.09
6497 10723 5.030295 GCAAATAAATCACCATCAGTCACG 58.970 41.667 0.00 0.00 0.00 4.35
6501 10727 3.401033 AATCACCATCAGTCACGTCAA 57.599 42.857 0.00 0.00 0.00 3.18
6502 10728 3.616956 ATCACCATCAGTCACGTCAAT 57.383 42.857 0.00 0.00 0.00 2.57
6503 10729 4.736126 ATCACCATCAGTCACGTCAATA 57.264 40.909 0.00 0.00 0.00 1.90
6504 10730 3.845178 TCACCATCAGTCACGTCAATAC 58.155 45.455 0.00 0.00 0.00 1.89
6505 10731 3.257127 TCACCATCAGTCACGTCAATACA 59.743 43.478 0.00 0.00 0.00 2.29
6506 10732 3.993736 CACCATCAGTCACGTCAATACAA 59.006 43.478 0.00 0.00 0.00 2.41
6507 10733 4.450757 CACCATCAGTCACGTCAATACAAA 59.549 41.667 0.00 0.00 0.00 2.83
6508 10734 5.049749 CACCATCAGTCACGTCAATACAAAA 60.050 40.000 0.00 0.00 0.00 2.44
6509 10735 5.049680 ACCATCAGTCACGTCAATACAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
6510 10736 5.179368 CCATCAGTCACGTCAATACAAAACT 59.821 40.000 0.00 0.00 0.00 2.66
6511 10737 6.367695 CCATCAGTCACGTCAATACAAAACTA 59.632 38.462 0.00 0.00 0.00 2.24
6512 10738 7.411912 CCATCAGTCACGTCAATACAAAACTAG 60.412 40.741 0.00 0.00 0.00 2.57
6513 10739 6.741109 TCAGTCACGTCAATACAAAACTAGA 58.259 36.000 0.00 0.00 0.00 2.43
6514 10740 7.204604 TCAGTCACGTCAATACAAAACTAGAA 58.795 34.615 0.00 0.00 0.00 2.10
6515 10741 7.707464 TCAGTCACGTCAATACAAAACTAGAAA 59.293 33.333 0.00 0.00 0.00 2.52
6516 10742 8.332464 CAGTCACGTCAATACAAAACTAGAAAA 58.668 33.333 0.00 0.00 0.00 2.29
6517 10743 8.333186 AGTCACGTCAATACAAAACTAGAAAAC 58.667 33.333 0.00 0.00 0.00 2.43
6518 10744 8.117988 GTCACGTCAATACAAAACTAGAAAACA 58.882 33.333 0.00 0.00 0.00 2.83
6519 10745 8.332464 TCACGTCAATACAAAACTAGAAAACAG 58.668 33.333 0.00 0.00 0.00 3.16
6520 10746 8.332464 CACGTCAATACAAAACTAGAAAACAGA 58.668 33.333 0.00 0.00 0.00 3.41
6521 10747 9.052759 ACGTCAATACAAAACTAGAAAACAGAT 57.947 29.630 0.00 0.00 0.00 2.90
6522 10748 9.878599 CGTCAATACAAAACTAGAAAACAGATT 57.121 29.630 0.00 0.00 0.00 2.40
6533 10759 8.100508 ACTAGAAAACAGATTAAACAAGGAGC 57.899 34.615 0.00 0.00 0.00 4.70
6534 10760 6.959639 AGAAAACAGATTAAACAAGGAGCA 57.040 33.333 0.00 0.00 0.00 4.26
6535 10761 7.346751 AGAAAACAGATTAAACAAGGAGCAA 57.653 32.000 0.00 0.00 0.00 3.91
6536 10762 7.203218 AGAAAACAGATTAAACAAGGAGCAAC 58.797 34.615 0.00 0.00 0.00 4.17
6537 10763 5.453567 AACAGATTAAACAAGGAGCAACC 57.546 39.130 0.00 0.00 39.35 3.77
6538 10764 4.469657 ACAGATTAAACAAGGAGCAACCA 58.530 39.130 2.96 0.00 42.04 3.67
6539 10765 4.892934 ACAGATTAAACAAGGAGCAACCAA 59.107 37.500 2.96 0.00 42.04 3.67
6540 10766 5.539955 ACAGATTAAACAAGGAGCAACCAAT 59.460 36.000 2.96 0.00 42.04 3.16
6541 10767 6.719370 ACAGATTAAACAAGGAGCAACCAATA 59.281 34.615 2.96 0.00 42.04 1.90
6542 10768 7.029563 CAGATTAAACAAGGAGCAACCAATAC 58.970 38.462 2.96 0.00 42.04 1.89
6543 10769 6.719370 AGATTAAACAAGGAGCAACCAATACA 59.281 34.615 2.96 0.00 42.04 2.29
6544 10770 6.716934 TTAAACAAGGAGCAACCAATACAA 57.283 33.333 2.96 0.00 42.04 2.41
6545 10771 5.806654 AAACAAGGAGCAACCAATACAAT 57.193 34.783 2.96 0.00 42.04 2.71
6546 10772 6.909550 AAACAAGGAGCAACCAATACAATA 57.090 33.333 2.96 0.00 42.04 1.90
6547 10773 5.897377 ACAAGGAGCAACCAATACAATAC 57.103 39.130 2.96 0.00 42.04 1.89
6548 10774 5.321102 ACAAGGAGCAACCAATACAATACA 58.679 37.500 2.96 0.00 42.04 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.589014 CGCTTGGCATCTTCTTGTTTC 58.411 47.619 0.00 0.00 0.00 2.78
59 60 2.876550 GGTATACATTGGAACCGAAGCC 59.123 50.000 5.01 0.00 0.00 4.35
75 76 4.527038 GCTGTCAGCATAGGTTAGGGTATA 59.473 45.833 20.16 0.00 41.89 1.47
111 112 4.941713 TGCCTCCCTGTTTGGTAATTAAT 58.058 39.130 0.00 0.00 0.00 1.40
130 132 1.800805 CATATCCGGTGAGTGATGCC 58.199 55.000 0.00 0.00 0.00 4.40
149 151 0.886490 ATGGAATCGGGATCGCAAGC 60.886 55.000 10.70 0.00 36.13 4.01
153 155 1.291877 CGGAATGGAATCGGGATCGC 61.292 60.000 0.00 0.00 36.13 4.58
226 228 0.779997 AATGACCTTGGGCCTGACTT 59.220 50.000 4.53 0.00 0.00 3.01
259 264 4.518970 CCTTAACTGCTGCTAACCAGAAAA 59.481 41.667 0.00 0.00 44.64 2.29
302 307 0.249996 GACGGGGTCAACTTTTCCGA 60.250 55.000 7.07 0.00 42.94 4.55
309 314 1.988406 GGGCTAGACGGGGTCAACT 60.988 63.158 0.00 0.00 34.60 3.16
323 328 0.543883 TCTCAAGACTCTGCTGGGCT 60.544 55.000 0.00 0.00 0.00 5.19
345 350 6.891361 TCTTTGAAATAATGATCCAAGCCAGA 59.109 34.615 0.00 0.00 0.00 3.86
352 357 8.627403 GCTTCTCATCTTTGAAATAATGATCCA 58.373 33.333 4.31 0.00 0.00 3.41
499 508 3.118811 GCCATCTCTTTCAGTAGCTCTGT 60.119 47.826 11.37 0.00 43.97 3.41
591 600 0.679505 CCGGCGGAGAAGATATCCAA 59.320 55.000 24.41 0.00 36.57 3.53
593 602 0.966920 TTCCGGCGGAGAAGATATCC 59.033 55.000 29.30 0.00 31.21 2.59
671 680 1.072965 AGAAGTTGGTCCCAGAGCTTG 59.927 52.381 0.00 0.00 0.00 4.01
710 719 3.377172 CGGGGGTCAATATTTCTGTGAAC 59.623 47.826 0.00 0.00 0.00 3.18
721 730 2.041430 TCAGCCCGGGGGTCAATA 59.959 61.111 25.28 0.00 37.65 1.90
748 757 1.532437 GCAAACAAATGGCTGCTTTCC 59.468 47.619 0.00 0.00 0.00 3.13
804 813 4.592485 TGAGTTTGTTGTTGTTGTTGGT 57.408 36.364 0.00 0.00 0.00 3.67
808 820 4.039852 ACCCTTTGAGTTTGTTGTTGTTGT 59.960 37.500 0.00 0.00 0.00 3.32
830 842 5.959618 AGTGAAAAAGTGCATACCCTTAC 57.040 39.130 0.00 0.00 0.00 2.34
910 922 6.150140 GGAGAGAAGTGAAAAAGTGCATATGT 59.850 38.462 4.29 0.00 0.00 2.29
1023 1041 2.188207 GGCGAAGGGAGAGAAGCC 59.812 66.667 0.00 0.00 37.61 4.35
1147 1165 4.096003 GCTCCTGTTAGCCCCGCA 62.096 66.667 0.00 0.00 36.45 5.69
1206 1224 2.103601 ACCGTCATCATCATCAGCATCA 59.896 45.455 0.00 0.00 0.00 3.07
1227 1245 0.824109 CGACATACAGCTTCCCTCCA 59.176 55.000 0.00 0.00 0.00 3.86
1285 1303 2.586792 GTTCCGAGCTGCCCAGAT 59.413 61.111 0.00 0.00 0.00 2.90
1507 1530 5.570234 TTTTTCCCCATAGATACGCAAAC 57.430 39.130 0.00 0.00 0.00 2.93
1528 1552 7.839680 AATCCAGTAAGATCAAGGTTTGTTT 57.160 32.000 0.00 0.00 0.00 2.83
1573 1597 1.202348 GCGAAACAGGGGATGGAAAAG 59.798 52.381 0.00 0.00 0.00 2.27
1602 1626 9.507280 CTAATTTCATTTGTATCGTTTCAGCAT 57.493 29.630 0.00 0.00 0.00 3.79
1645 1669 3.250762 CAGCAACATCGAACAAAAGAGGA 59.749 43.478 0.00 0.00 0.00 3.71
1647 1671 4.214437 GACAGCAACATCGAACAAAAGAG 58.786 43.478 0.00 0.00 0.00 2.85
1651 1675 3.002246 GTCTGACAGCAACATCGAACAAA 59.998 43.478 2.24 0.00 0.00 2.83
1897 2735 6.378280 CCATGTAGCCTTTCCTGAATTAGTTT 59.622 38.462 0.00 0.00 0.00 2.66
2213 3135 5.605534 AGCAGTCGAGCATCTAATTACATT 58.394 37.500 0.00 0.00 36.85 2.71
2293 3231 2.041620 TGGTTCTGCTGCCTTCCTTATT 59.958 45.455 0.00 0.00 0.00 1.40
2330 3377 8.573885 AGTTATTTGTTACTGGGAGTTTTAAGC 58.426 33.333 0.00 0.00 0.00 3.09
2358 3455 6.814146 GGGAGAGATGATAATTAGTAAAGCCG 59.186 42.308 0.00 0.00 0.00 5.52
2433 4069 5.064452 CCTCTTCCTGTTCATGAAAGATTCG 59.936 44.000 10.35 0.00 0.00 3.34
2494 4133 0.527565 CAGTATGGTTTGGCCTGTGC 59.472 55.000 3.32 0.00 38.35 4.57
2495 4134 0.527565 GCAGTATGGTTTGGCCTGTG 59.472 55.000 3.32 0.00 38.35 3.66
2511 4150 6.872628 TTGCAAATATAGAAGATCTGGCAG 57.127 37.500 8.58 8.58 0.00 4.85
2559 4198 2.159043 ACTTAGGGATGCATGACACTCG 60.159 50.000 2.46 0.00 0.00 4.18
2800 4484 3.185455 AGAGCCTAAAAGACCTGGATGT 58.815 45.455 0.00 0.00 0.00 3.06
2879 4563 6.701340 TGTTTTCTACACTGTCTGCTATCAT 58.299 36.000 0.00 0.00 0.00 2.45
3179 4885 4.560819 CGTAGAGTGCTGATGTTCTTCTTC 59.439 45.833 0.00 0.00 0.00 2.87
3180 4886 4.489810 CGTAGAGTGCTGATGTTCTTCTT 58.510 43.478 0.00 0.00 0.00 2.52
3181 4887 3.119316 CCGTAGAGTGCTGATGTTCTTCT 60.119 47.826 0.00 0.00 0.00 2.85
3719 6597 3.254024 TTTCTGCCGGCCCTCAGAC 62.254 63.158 26.77 0.00 38.87 3.51
3886 6874 8.480501 ACTACAGGAAAACAGTTCACTTACTTA 58.519 33.333 0.00 0.00 0.00 2.24
3906 6894 2.069273 CTCCCGTGCTTTGAACTACAG 58.931 52.381 0.00 0.00 0.00 2.74
3909 6897 1.968493 ACTCTCCCGTGCTTTGAACTA 59.032 47.619 0.00 0.00 0.00 2.24
4030 7028 5.711506 TCCAATTCTGCTCTTTGCTCATTTA 59.288 36.000 0.00 0.00 43.37 1.40
4954 8154 2.562973 ATTCGGAAGGCCTAGGGGGT 62.563 60.000 5.16 0.00 37.43 4.95
5029 8229 2.276309 CTCAGGTGGCCATTCCCCTC 62.276 65.000 9.72 0.00 34.49 4.30
5283 9123 7.207383 ACCACCTTACTTCAAAGCAAATAAAC 58.793 34.615 0.00 0.00 0.00 2.01
5566 9408 0.917259 CTAACACGACTGCGCAGATC 59.083 55.000 42.03 30.52 42.48 2.75
5572 9414 1.060713 CACTTCCTAACACGACTGCG 58.939 55.000 0.00 0.00 44.79 5.18
5573 9415 2.433868 TCACTTCCTAACACGACTGC 57.566 50.000 0.00 0.00 0.00 4.40
5579 9421 4.278419 ACCATTTGCTTCACTTCCTAACAC 59.722 41.667 0.00 0.00 0.00 3.32
5632 9476 3.165071 ACTGCTAAAGTGGGGGAAAATG 58.835 45.455 0.00 0.00 37.88 2.32
5683 9528 5.118664 CGAAAACATGTACATCACTTCTCGT 59.881 40.000 5.07 0.00 0.00 4.18
5717 9566 2.618816 GCCATGTCAGTTCATCCCAAGA 60.619 50.000 0.00 0.00 0.00 3.02
5718 9567 1.747355 GCCATGTCAGTTCATCCCAAG 59.253 52.381 0.00 0.00 0.00 3.61
5773 9624 6.009589 TCCATACACCATCACTTTTCAATGT 58.990 36.000 0.00 0.00 0.00 2.71
5830 9685 4.489810 CACGCTGATTTGACTCTAACTCT 58.510 43.478 0.00 0.00 0.00 3.24
5862 9717 8.621532 TCTGATTGCTCATTTACTGTAGTTTT 57.378 30.769 0.00 0.00 0.00 2.43
5865 9720 8.918116 TCTATCTGATTGCTCATTTACTGTAGT 58.082 33.333 0.00 0.00 0.00 2.73
5866 9721 9.926158 ATCTATCTGATTGCTCATTTACTGTAG 57.074 33.333 0.00 0.00 29.59 2.74
5890 9745 2.086054 AAACCGTCTGTGCTCTGATC 57.914 50.000 0.00 0.00 0.00 2.92
5926 9781 4.209080 CGAACGTGCATAGCTAATTCATGA 59.791 41.667 15.13 0.00 0.00 3.07
5949 9804 4.697514 TGCCTGTATCTGCAGTAAGAATC 58.302 43.478 14.67 0.72 34.84 2.52
5962 9817 4.365723 CTGAAAAATGGCATGCCTGTATC 58.634 43.478 35.53 25.06 36.94 2.24
5993 9874 6.957150 ACGTAGTACAGATAATAGTGTGCTC 58.043 40.000 0.38 0.00 41.94 4.26
5994 9875 6.939132 ACGTAGTACAGATAATAGTGTGCT 57.061 37.500 0.38 0.00 41.94 4.40
6016 9900 2.731691 TTTCCGCTGACCTGGCAGAC 62.732 60.000 17.94 10.29 38.14 3.51
6017 9901 2.515979 TTTCCGCTGACCTGGCAGA 61.516 57.895 17.94 0.00 38.14 4.26
6018 9902 2.032528 TTTCCGCTGACCTGGCAG 59.967 61.111 7.75 7.75 38.91 4.85
6028 9912 2.434359 GCCTACGCAGTTTCCGCT 60.434 61.111 0.00 0.00 37.78 5.52
6049 9933 4.440880 GTCAGTCAGAGCAGCTAAATGAT 58.559 43.478 0.00 0.00 0.00 2.45
6065 9949 3.054655 TGGGGCTAAATTGTAGGTCAGTC 60.055 47.826 0.00 0.00 0.00 3.51
6069 9953 3.889538 GGATTGGGGCTAAATTGTAGGTC 59.110 47.826 0.00 0.00 0.00 3.85
6096 9983 4.514066 ACACCTTTACTTTGAAGTTAGCGG 59.486 41.667 1.20 1.31 40.37 5.52
6117 10005 3.342377 TGGGAATGTGAAAGCGATACA 57.658 42.857 0.00 0.00 0.00 2.29
6124 10012 3.801594 CCGTTTGTTTGGGAATGTGAAAG 59.198 43.478 0.00 0.00 0.00 2.62
6132 10020 2.376109 TGTAAGCCGTTTGTTTGGGAA 58.624 42.857 0.00 0.00 0.00 3.97
6133 10021 2.054232 TGTAAGCCGTTTGTTTGGGA 57.946 45.000 0.00 0.00 0.00 4.37
6134 10022 2.359531 TCTTGTAAGCCGTTTGTTTGGG 59.640 45.455 0.00 0.00 0.00 4.12
6150 10062 3.679389 CAACTGCCTAATCCTGTCTTGT 58.321 45.455 0.00 0.00 0.00 3.16
6154 10066 2.113860 TGCAACTGCCTAATCCTGTC 57.886 50.000 0.00 0.00 41.18 3.51
6158 10070 3.953201 GCATGCAACTGCCTAATCC 57.047 52.632 14.21 0.00 41.18 3.01
6168 10080 1.661341 TTGGTTGTTTGGCATGCAAC 58.339 45.000 21.36 16.41 41.02 4.17
6187 10099 2.889522 TGGAGGAGTAGGCCCTTAAT 57.110 50.000 0.00 0.00 33.36 1.40
6195 10107 6.147437 AGATAGGTATCTTGGAGGAGTAGG 57.853 45.833 0.00 0.00 39.96 3.18
6203 10115 8.456940 TCAAGGAAGATAGATAGGTATCTTGGA 58.543 37.037 10.18 2.08 45.70 3.53
6204 10116 8.657387 TCAAGGAAGATAGATAGGTATCTTGG 57.343 38.462 10.18 0.20 45.70 3.61
6205 10117 9.308000 ACTCAAGGAAGATAGATAGGTATCTTG 57.692 37.037 10.18 0.00 45.70 3.02
6257 10437 1.999071 GCGCACCACCTGTTTGTTCA 61.999 55.000 0.30 0.00 0.00 3.18
6298 10478 0.395586 TCTCTGCTCCTCTCCTCTGC 60.396 60.000 0.00 0.00 0.00 4.26
6323 10508 0.827368 CACCTCCCTCCTCTGTAAGC 59.173 60.000 0.00 0.00 0.00 3.09
6339 10524 1.620819 TCCTCTCTGCTTCACTTCACC 59.379 52.381 0.00 0.00 0.00 4.02
6341 10526 2.603021 AGTCCTCTCTGCTTCACTTCA 58.397 47.619 0.00 0.00 0.00 3.02
6342 10527 3.244044 ACAAGTCCTCTCTGCTTCACTTC 60.244 47.826 0.00 0.00 0.00 3.01
6343 10528 2.703007 ACAAGTCCTCTCTGCTTCACTT 59.297 45.455 0.00 0.00 0.00 3.16
6346 10531 3.501349 AGTACAAGTCCTCTCTGCTTCA 58.499 45.455 0.00 0.00 0.00 3.02
6348 10533 4.668636 ACTAGTACAAGTCCTCTCTGCTT 58.331 43.478 0.00 0.00 0.00 3.91
6359 10566 6.531923 TGACTGACTAGTGACTAGTACAAGT 58.468 40.000 23.95 23.93 45.90 3.16
6366 10573 5.295787 GGATGACTGACTGACTAGTGACTAG 59.704 48.000 17.61 17.61 39.72 2.57
6367 10574 5.186942 GGATGACTGACTGACTAGTGACTA 58.813 45.833 0.00 0.00 37.25 2.59
6368 10575 4.013728 GGATGACTGACTGACTAGTGACT 58.986 47.826 0.00 0.00 37.25 3.41
6369 10576 3.759086 TGGATGACTGACTGACTAGTGAC 59.241 47.826 0.00 0.00 37.25 3.67
6370 10577 4.034285 TGGATGACTGACTGACTAGTGA 57.966 45.455 0.00 0.00 37.25 3.41
6371 10578 4.400567 TCATGGATGACTGACTGACTAGTG 59.599 45.833 0.00 0.00 37.25 2.74
6372 10579 4.604156 TCATGGATGACTGACTGACTAGT 58.396 43.478 0.00 0.00 40.66 2.57
6373 10580 4.886489 TCTCATGGATGACTGACTGACTAG 59.114 45.833 0.00 0.00 32.50 2.57
6374 10581 4.860022 TCTCATGGATGACTGACTGACTA 58.140 43.478 0.00 0.00 32.50 2.59
6387 10594 2.097825 GTGCTTGCCTTTCTCATGGAT 58.902 47.619 0.00 0.00 0.00 3.41
6408 10615 2.583520 GCAGGAGCTAGCTGTGCT 59.416 61.111 29.37 14.90 44.24 4.40
6410 10617 0.814410 CATGGCAGGAGCTAGCTGTG 60.814 60.000 24.99 19.70 41.70 3.66
6411 10618 1.525923 CATGGCAGGAGCTAGCTGT 59.474 57.895 24.99 6.11 41.70 4.40
6412 10619 1.892862 GCATGGCAGGAGCTAGCTG 60.893 63.158 24.99 10.30 41.70 4.24
6416 10623 1.149854 CATGGCATGGCAGGAGCTA 59.850 57.895 27.79 1.36 41.70 3.32
6417 10624 2.123854 CATGGCATGGCAGGAGCT 60.124 61.111 27.79 7.33 41.70 4.09
6478 10704 5.084818 TGACGTGACTGATGGTGATTTAT 57.915 39.130 0.00 0.00 0.00 1.40
6479 10705 4.529109 TGACGTGACTGATGGTGATTTA 57.471 40.909 0.00 0.00 0.00 1.40
6507 10733 8.568794 GCTCCTTGTTTAATCTGTTTTCTAGTT 58.431 33.333 0.00 0.00 0.00 2.24
6508 10734 7.719633 TGCTCCTTGTTTAATCTGTTTTCTAGT 59.280 33.333 0.00 0.00 0.00 2.57
6509 10735 8.099364 TGCTCCTTGTTTAATCTGTTTTCTAG 57.901 34.615 0.00 0.00 0.00 2.43
6510 10736 8.349983 GTTGCTCCTTGTTTAATCTGTTTTCTA 58.650 33.333 0.00 0.00 0.00 2.10
6511 10737 6.959639 TGCTCCTTGTTTAATCTGTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
6512 10738 6.420903 GGTTGCTCCTTGTTTAATCTGTTTTC 59.579 38.462 0.00 0.00 0.00 2.29
6513 10739 6.127196 TGGTTGCTCCTTGTTTAATCTGTTTT 60.127 34.615 0.80 0.00 37.07 2.43
6514 10740 5.362430 TGGTTGCTCCTTGTTTAATCTGTTT 59.638 36.000 0.80 0.00 37.07 2.83
6515 10741 4.892934 TGGTTGCTCCTTGTTTAATCTGTT 59.107 37.500 0.80 0.00 37.07 3.16
6516 10742 4.469657 TGGTTGCTCCTTGTTTAATCTGT 58.530 39.130 0.80 0.00 37.07 3.41
6517 10743 5.452078 TTGGTTGCTCCTTGTTTAATCTG 57.548 39.130 0.80 0.00 37.07 2.90
6518 10744 6.719370 TGTATTGGTTGCTCCTTGTTTAATCT 59.281 34.615 0.80 0.00 37.07 2.40
6519 10745 6.919721 TGTATTGGTTGCTCCTTGTTTAATC 58.080 36.000 0.80 0.00 37.07 1.75
6520 10746 6.909550 TGTATTGGTTGCTCCTTGTTTAAT 57.090 33.333 0.80 0.00 37.07 1.40
6521 10747 6.716934 TTGTATTGGTTGCTCCTTGTTTAA 57.283 33.333 0.80 0.00 37.07 1.52
6522 10748 6.909550 ATTGTATTGGTTGCTCCTTGTTTA 57.090 33.333 0.80 0.00 37.07 2.01
6523 10749 5.806654 ATTGTATTGGTTGCTCCTTGTTT 57.193 34.783 0.80 0.00 37.07 2.83
6524 10750 5.772672 TGTATTGTATTGGTTGCTCCTTGTT 59.227 36.000 0.80 0.00 37.07 2.83
6525 10751 5.321102 TGTATTGTATTGGTTGCTCCTTGT 58.679 37.500 0.80 0.00 37.07 3.16
6526 10752 5.895636 TGTATTGTATTGGTTGCTCCTTG 57.104 39.130 0.80 0.00 37.07 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.