Multiple sequence alignment - TraesCS5A01G294400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G294400 chr5A 100.000 3165 0 0 1 3165 503485356 503488520 0.000000e+00 5845.0
1 TraesCS5A01G294400 chr5A 85.679 1229 122 19 2 1202 503439060 503440262 0.000000e+00 1245.0
2 TraesCS5A01G294400 chr5A 83.865 1066 123 16 206 1250 503492713 503493750 0.000000e+00 970.0
3 TraesCS5A01G294400 chr5A 76.821 1126 184 47 105 1177 503398498 503399599 2.130000e-156 562.0
4 TraesCS5A01G294400 chr5A 83.586 396 50 9 1878 2266 503466973 503467360 1.080000e-94 357.0
5 TraesCS5A01G294400 chr5A 82.081 346 48 7 1544 1882 503442111 503442449 1.860000e-72 283.0
6 TraesCS5A01G294400 chr5A 77.112 367 45 19 105 456 503268327 503268669 3.240000e-40 176.0
7 TraesCS5A01G294400 chr5B 81.950 2144 286 52 67 2173 478425475 478427554 0.000000e+00 1722.0
8 TraesCS5A01G294400 chr5B 86.921 1208 128 10 52 1250 478404468 478405654 0.000000e+00 1328.0
9 TraesCS5A01G294400 chr5B 83.380 1083 128 27 206 1259 478430774 478431833 0.000000e+00 955.0
10 TraesCS5A01G294400 chr5B 77.128 975 147 45 105 1034 478335616 478336559 2.190000e-136 496.0
11 TraesCS5A01G294400 chr5B 75.000 272 52 12 2688 2955 629894183 629893924 9.280000e-21 111.0
12 TraesCS5A01G294400 chr5D 84.712 1511 166 26 1 1482 398464292 398465766 0.000000e+00 1450.0
13 TraesCS5A01G294400 chr5D 82.764 1201 161 26 57 1242 398434571 398435740 0.000000e+00 1029.0
14 TraesCS5A01G294400 chr5D 83.349 1069 136 25 206 1250 398482775 398483825 0.000000e+00 950.0
15 TraesCS5A01G294400 chr5D 79.019 1182 179 33 105 1248 398245425 398246575 0.000000e+00 745.0
16 TraesCS5A01G294400 chr5D 79.447 759 117 26 1520 2266 398465827 398466558 4.710000e-138 501.0
17 TraesCS5A01G294400 chr5D 77.295 414 76 13 2503 2904 425036141 425036548 8.830000e-56 228.0
18 TraesCS5A01G294400 chr5D 92.366 131 9 1 3033 3163 159640359 159640230 5.390000e-43 185.0
19 TraesCS5A01G294400 chr5D 83.333 120 7 4 2 109 398482606 398482724 7.220000e-17 99.0
20 TraesCS5A01G294400 chr7B 80.000 560 99 8 2478 3028 640148989 640149544 4.920000e-108 401.0
21 TraesCS5A01G294400 chr7B 77.208 351 67 11 2562 2904 624473092 624472747 3.220000e-45 193.0
22 TraesCS5A01G294400 chr3D 77.641 407 73 12 2510 2904 25147190 25146790 6.830000e-57 231.0
23 TraesCS5A01G294400 chr3D 92.366 131 10 0 3033 3163 150829280 150829150 1.500000e-43 187.0
24 TraesCS5A01G294400 chr7D 77.806 392 70 12 2525 2904 595934509 595934895 3.180000e-55 226.0
25 TraesCS5A01G294400 chr7D 78.378 333 57 11 2563 2893 261116796 261117115 5.350000e-48 202.0
26 TraesCS5A01G294400 chr7D 78.618 304 54 9 2503 2800 76401354 76401056 1.160000e-44 191.0
27 TraesCS5A01G294400 chr7D 92.366 131 10 0 3033 3163 161971456 161971326 1.500000e-43 187.0
28 TraesCS5A01G294400 chr7A 77.135 363 69 10 2503 2858 80318312 80317957 6.920000e-47 198.0
29 TraesCS5A01G294400 chr3B 93.893 131 8 0 3033 3163 757783715 757783585 6.920000e-47 198.0
30 TraesCS5A01G294400 chr3B 90.141 142 13 1 3023 3163 335843024 335842883 1.940000e-42 183.0
31 TraesCS5A01G294400 chr6D 93.182 132 8 1 3033 3163 445307598 445307729 3.220000e-45 193.0
32 TraesCS5A01G294400 chr2D 93.130 131 9 0 3033 3163 446347855 446347725 3.220000e-45 193.0
33 TraesCS5A01G294400 chr4D 92.366 131 10 0 3033 3163 433698299 433698429 1.500000e-43 187.0
34 TraesCS5A01G294400 chr4D 77.177 333 65 10 2507 2834 506045268 506045594 1.940000e-42 183.0
35 TraesCS5A01G294400 chr4D 81.395 86 15 1 2305 2390 338446034 338445950 5.660000e-08 69.4
36 TraesCS5A01G294400 chr3A 92.424 132 7 3 3033 3163 482398200 482398071 5.390000e-43 185.0
37 TraesCS5A01G294400 chr2A 77.931 145 27 5 2293 2434 584144477 584144619 5.620000e-13 86.1
38 TraesCS5A01G294400 chr6A 92.157 51 4 0 2855 2905 3559547 3559497 4.380000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G294400 chr5A 503485356 503488520 3164 False 5845.0 5845 100.0000 1 3165 1 chr5A.!!$F4 3164
1 TraesCS5A01G294400 chr5A 503492713 503493750 1037 False 970.0 970 83.8650 206 1250 1 chr5A.!!$F5 1044
2 TraesCS5A01G294400 chr5A 503439060 503442449 3389 False 764.0 1245 83.8800 2 1882 2 chr5A.!!$F6 1880
3 TraesCS5A01G294400 chr5A 503398498 503399599 1101 False 562.0 562 76.8210 105 1177 1 chr5A.!!$F2 1072
4 TraesCS5A01G294400 chr5B 478425475 478431833 6358 False 1338.5 1722 82.6650 67 2173 2 chr5B.!!$F3 2106
5 TraesCS5A01G294400 chr5B 478404468 478405654 1186 False 1328.0 1328 86.9210 52 1250 1 chr5B.!!$F2 1198
6 TraesCS5A01G294400 chr5B 478335616 478336559 943 False 496.0 496 77.1280 105 1034 1 chr5B.!!$F1 929
7 TraesCS5A01G294400 chr5D 398434571 398435740 1169 False 1029.0 1029 82.7640 57 1242 1 chr5D.!!$F2 1185
8 TraesCS5A01G294400 chr5D 398464292 398466558 2266 False 975.5 1450 82.0795 1 2266 2 chr5D.!!$F4 2265
9 TraesCS5A01G294400 chr5D 398245425 398246575 1150 False 745.0 745 79.0190 105 1248 1 chr5D.!!$F1 1143
10 TraesCS5A01G294400 chr5D 398482606 398483825 1219 False 524.5 950 83.3410 2 1250 2 chr5D.!!$F5 1248
11 TraesCS5A01G294400 chr7B 640148989 640149544 555 False 401.0 401 80.0000 2478 3028 1 chr7B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 466 1.006281 AGCCCATGCCTCATTTCAAGA 59.994 47.619 0.00 0.0 38.69 3.02 F
1419 8037 0.107081 TCGCGAGTTTCTCCCCAAAA 59.893 50.000 3.71 0.0 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 8633 0.035881 CAGCTTGGCACTCTTCTCCA 59.964 55.0 0.00 0.00 0.00 3.86 R
3084 9931 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.0 20.33 16.33 45.25 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 130 3.525199 AGGAGAGATATTGGCAGTTTGGT 59.475 43.478 0.00 0.00 0.00 3.67
170 187 2.038557 ACAGGTGCCTTTCGTGACTTAT 59.961 45.455 0.00 0.00 0.00 1.73
320 349 3.611766 GCGAGGAACCAAAAGTTTGATCC 60.612 47.826 15.33 15.33 39.40 3.36
331 360 4.647564 AAGTTTGATCCTGACATGACCT 57.352 40.909 0.00 0.00 0.00 3.85
376 418 3.717400 TGCTCAGCTTCCGACTATAAG 57.283 47.619 0.00 0.00 0.00 1.73
378 420 3.181486 TGCTCAGCTTCCGACTATAAGTG 60.181 47.826 0.00 0.00 0.00 3.16
421 466 1.006281 AGCCCATGCCTCATTTCAAGA 59.994 47.619 0.00 0.00 38.69 3.02
486 547 2.540265 CCTGAGGCACCATAGCTTAG 57.460 55.000 0.00 0.00 34.17 2.18
487 548 1.542108 CCTGAGGCACCATAGCTTAGC 60.542 57.143 0.00 0.00 34.17 3.09
488 549 1.139654 CTGAGGCACCATAGCTTAGCA 59.860 52.381 7.07 0.00 34.17 3.49
489 550 1.770658 TGAGGCACCATAGCTTAGCAT 59.229 47.619 7.07 0.00 34.17 3.79
492 553 1.528129 GCACCATAGCTTAGCATCCC 58.472 55.000 7.07 0.00 0.00 3.85
650 730 2.908015 GCCGTGGGATGGCTAGAA 59.092 61.111 0.00 0.00 46.66 2.10
898 6178 2.407361 CGACAACTGCCGTTACACTAAG 59.593 50.000 0.00 0.00 0.00 2.18
914 6194 6.239217 ACACTAAGGATGATGATGTGCTAA 57.761 37.500 0.00 0.00 0.00 3.09
931 6215 5.939296 TGTGCTAATTCATGTGATCAAGACA 59.061 36.000 0.00 0.00 0.00 3.41
948 6232 2.433604 AGACAACGATGATGAGCCATCT 59.566 45.455 13.94 3.12 41.06 2.90
997 6281 1.376037 GCTGAGGGGTTGGAGTTCG 60.376 63.158 0.00 0.00 0.00 3.95
1056 6340 1.823169 TTAGGAGGTTTCGGCAGCGT 61.823 55.000 0.00 0.00 0.00 5.07
1086 6375 5.074746 AGGGATTTTAGGGTCTTGTTTGT 57.925 39.130 0.00 0.00 0.00 2.83
1202 6508 6.599638 AGGCTTGACAAACAGTTATCCTTATC 59.400 38.462 0.00 0.00 0.00 1.75
1246 7704 5.512942 TTGTTAACATCCAAGATCCCTCA 57.487 39.130 9.56 0.00 0.00 3.86
1250 7708 0.250209 CATCCAAGATCCCTCAGCCG 60.250 60.000 0.00 0.00 0.00 5.52
1259 7717 2.683933 CCTCAGCCGTACCCACCT 60.684 66.667 0.00 0.00 0.00 4.00
1286 7744 3.326880 AGGAAAAACCATCTACACCGAGT 59.673 43.478 0.00 0.00 42.04 4.18
1288 7746 4.628766 GGAAAAACCATCTACACCGAGTAC 59.371 45.833 0.00 0.00 38.79 2.73
1291 7749 5.479124 AAACCATCTACACCGAGTACTTT 57.521 39.130 0.00 0.00 0.00 2.66
1298 7756 4.180496 CCGAGTACTTTGCGGGTC 57.820 61.111 12.50 0.00 41.29 4.46
1317 7777 1.800681 GCGGTGTAAATCCACAGGC 59.199 57.895 0.00 0.00 37.06 4.85
1350 7810 4.941263 ACATACAACATGTTTGCCGAGTAT 59.059 37.500 8.77 9.47 33.51 2.12
1351 7811 5.064707 ACATACAACATGTTTGCCGAGTATC 59.935 40.000 8.77 0.00 33.51 2.24
1404 7864 2.734670 TGGTAATATTCGGTCTTCGCG 58.265 47.619 0.00 0.00 39.05 5.87
1410 8028 1.347320 ATTCGGTCTTCGCGAGTTTC 58.653 50.000 9.59 1.43 39.05 2.78
1415 8033 0.736672 GTCTTCGCGAGTTTCTCCCC 60.737 60.000 9.59 0.00 0.00 4.81
1416 8034 1.183030 TCTTCGCGAGTTTCTCCCCA 61.183 55.000 9.59 0.00 0.00 4.96
1419 8037 0.107081 TCGCGAGTTTCTCCCCAAAA 59.893 50.000 3.71 0.00 0.00 2.44
1421 8039 1.069227 CGCGAGTTTCTCCCCAAAAAG 60.069 52.381 0.00 0.00 0.00 2.27
1428 8046 4.645136 AGTTTCTCCCCAAAAAGAACACTC 59.355 41.667 0.00 0.00 31.46 3.51
1429 8047 3.943671 TCTCCCCAAAAAGAACACTCA 57.056 42.857 0.00 0.00 0.00 3.41
1441 8059 7.807977 AAAAGAACACTCAGCATAGAGAAAA 57.192 32.000 7.69 0.00 38.98 2.29
1449 8067 2.611292 CAGCATAGAGAAAAAGCCCGAG 59.389 50.000 0.00 0.00 0.00 4.63
1460 8078 0.110486 AAGCCCGAGAAAGGAAGCAA 59.890 50.000 0.00 0.00 0.00 3.91
1469 8087 4.035675 CGAGAAAGGAAGCAAAAGACACTT 59.964 41.667 0.00 0.00 0.00 3.16
1476 8094 3.169355 AGCAAAAGACACTTGGCAAAG 57.831 42.857 0.00 0.00 39.49 2.77
1505 8123 6.983906 AAAATCTCTGGAAGGAAAACATGT 57.016 33.333 0.00 0.00 0.00 3.21
1506 8124 5.972107 AATCTCTGGAAGGAAAACATGTG 57.028 39.130 0.00 0.00 0.00 3.21
1507 8125 3.149196 TCTCTGGAAGGAAAACATGTGC 58.851 45.455 0.00 0.00 0.00 4.57
1509 8127 4.041567 TCTCTGGAAGGAAAACATGTGCTA 59.958 41.667 0.00 0.00 0.00 3.49
1510 8128 4.724399 TCTGGAAGGAAAACATGTGCTAA 58.276 39.130 0.00 0.00 0.00 3.09
1512 8130 3.572255 TGGAAGGAAAACATGTGCTAACC 59.428 43.478 0.00 0.00 0.00 2.85
1513 8131 3.056821 GGAAGGAAAACATGTGCTAACCC 60.057 47.826 0.00 0.00 0.00 4.11
1514 8132 3.237268 AGGAAAACATGTGCTAACCCA 57.763 42.857 0.00 0.00 0.00 4.51
1515 8133 3.778265 AGGAAAACATGTGCTAACCCAT 58.222 40.909 0.00 0.00 0.00 4.00
1516 8134 3.511146 AGGAAAACATGTGCTAACCCATG 59.489 43.478 0.00 0.00 43.21 3.66
1521 8139 3.940209 CATGTGCTAACCCATGTGTTT 57.060 42.857 0.00 0.00 34.97 2.83
1522 8140 3.577667 CATGTGCTAACCCATGTGTTTG 58.422 45.455 0.00 0.00 34.97 2.93
1523 8141 2.937519 TGTGCTAACCCATGTGTTTGA 58.062 42.857 6.68 0.00 0.00 2.69
1528 8168 1.314730 AACCCATGTGTTTGACGGTC 58.685 50.000 0.00 0.00 0.00 4.79
1531 8171 1.573829 CCATGTGTTTGACGGTCCCG 61.574 60.000 5.55 3.76 46.03 5.14
1576 8408 1.604308 TCCACGGACACTCGGCTTA 60.604 57.895 0.00 0.00 0.00 3.09
1577 8409 0.968901 TCCACGGACACTCGGCTTAT 60.969 55.000 0.00 0.00 0.00 1.73
1583 8415 2.603560 CGGACACTCGGCTTATCTTTTC 59.396 50.000 0.00 0.00 0.00 2.29
1584 8416 3.596214 GGACACTCGGCTTATCTTTTCA 58.404 45.455 0.00 0.00 0.00 2.69
1618 8450 3.756802 TGGTGTGACCATTTGCCG 58.243 55.556 0.00 0.00 44.79 5.69
1651 8483 7.961326 ATGGAGAACACTTGGCTTATATTTT 57.039 32.000 0.00 0.00 0.00 1.82
1687 8519 8.579682 ACTTTTTAAAGTGCAGTGATCATTTC 57.420 30.769 7.05 0.00 46.80 2.17
1688 8520 7.379529 ACTTTTTAAAGTGCAGTGATCATTTCG 59.620 33.333 7.05 0.00 46.80 3.46
1689 8521 5.940192 TTAAAGTGCAGTGATCATTTCGT 57.060 34.783 0.00 0.00 0.00 3.85
1695 8527 3.926527 TGCAGTGATCATTTCGTGAGTAC 59.073 43.478 0.00 0.00 40.92 2.73
1707 8539 3.493334 TCGTGAGTACCCGATATCCAAT 58.507 45.455 0.00 0.00 0.00 3.16
1724 8556 3.991924 ATGCCTGGCTCCTCGTCCT 62.992 63.158 21.03 0.00 0.00 3.85
1730 8562 2.185608 GCTCCTCGTCCTTGCCTC 59.814 66.667 0.00 0.00 0.00 4.70
1734 8566 2.262915 CTCGTCCTTGCCTCGCTT 59.737 61.111 0.00 0.00 0.00 4.68
1738 8570 1.424493 CGTCCTTGCCTCGCTTCATC 61.424 60.000 0.00 0.00 0.00 2.92
1745 8577 1.068753 CCTCGCTTCATCGCAGGAT 59.931 57.895 0.00 0.00 32.41 3.24
1752 8584 3.274586 CATCGCAGGATGGCCACG 61.275 66.667 8.16 7.05 45.15 4.94
1756 8588 2.676471 GCAGGATGGCCACGGTTT 60.676 61.111 8.16 0.00 35.86 3.27
1758 8590 2.676471 AGGATGGCCACGGTTTGC 60.676 61.111 8.16 0.00 36.29 3.68
1771 8603 1.098050 GGTTTGCGCCATCTCTCAAT 58.902 50.000 4.18 0.00 0.00 2.57
1798 8632 2.833121 CCCTTATTGTGGCCGGCC 60.833 66.667 39.40 39.40 0.00 6.13
1799 8633 2.275418 CCTTATTGTGGCCGGCCT 59.725 61.111 43.34 27.54 36.94 5.19
1816 8650 0.676151 CCTGGAGAAGAGTGCCAAGC 60.676 60.000 0.00 0.00 0.00 4.01
1822 8656 0.250467 GAAGAGTGCCAAGCTGGACA 60.250 55.000 6.40 0.00 40.96 4.02
1882 8719 4.597507 GGTATTGGGATGGTTGAGGATCTA 59.402 45.833 0.00 0.00 34.92 1.98
1885 8722 4.219392 TGGGATGGTTGAGGATCTATCT 57.781 45.455 0.00 0.00 34.92 1.98
1889 8726 4.837860 GGATGGTTGAGGATCTATCTCACT 59.162 45.833 0.18 0.00 40.51 3.41
1898 8735 8.116651 TGAGGATCTATCTCACTATTTAGCAC 57.883 38.462 0.00 0.00 36.46 4.40
1899 8736 7.177568 TGAGGATCTATCTCACTATTTAGCACC 59.822 40.741 0.00 0.00 36.46 5.01
1901 8738 6.151312 GGATCTATCTCACTATTTAGCACCGA 59.849 42.308 0.00 0.00 0.00 4.69
1906 8743 6.161855 TCTCACTATTTAGCACCGATTGAT 57.838 37.500 0.00 0.00 0.00 2.57
1908 8745 5.056480 TCACTATTTAGCACCGATTGATGG 58.944 41.667 0.00 0.00 0.00 3.51
1909 8746 4.214119 CACTATTTAGCACCGATTGATGGG 59.786 45.833 0.00 0.00 0.00 4.00
1914 8751 1.149174 CACCGATTGATGGGGAGGG 59.851 63.158 0.00 0.00 28.32 4.30
1921 8758 3.017581 GATGGGGAGGGTGGTGCT 61.018 66.667 0.00 0.00 0.00 4.40
1922 8759 3.017581 ATGGGGAGGGTGGTGCTC 61.018 66.667 0.00 0.00 0.00 4.26
1943 8782 1.207488 TGGCTGCCCTAACTGGACAT 61.207 55.000 17.53 0.00 38.35 3.06
1944 8783 0.034089 GGCTGCCCTAACTGGACATT 60.034 55.000 7.66 0.00 38.35 2.71
1945 8784 1.383523 GCTGCCCTAACTGGACATTC 58.616 55.000 0.00 0.00 38.35 2.67
1964 8803 0.109781 CCAACCCATTTTCAGCGACG 60.110 55.000 0.00 0.00 0.00 5.12
1989 8828 6.872020 GGAGTTAGTTGCTATTACACTGACAA 59.128 38.462 0.00 0.00 0.00 3.18
1994 8833 6.755206 AGTTGCTATTACACTGACAAGTACA 58.245 36.000 0.00 0.00 33.79 2.90
2001 8840 2.159156 ACACTGACAAGTACAACAGCGA 60.159 45.455 0.00 0.00 33.79 4.93
2005 8844 3.723260 TGACAAGTACAACAGCGATGAA 58.277 40.909 8.12 0.00 0.00 2.57
2010 8849 6.503524 ACAAGTACAACAGCGATGAAAATTT 58.496 32.000 8.12 0.00 0.00 1.82
2011 8850 6.978080 ACAAGTACAACAGCGATGAAAATTTT 59.022 30.769 8.12 2.28 0.00 1.82
2014 8853 5.888412 ACAACAGCGATGAAAATTTTGAC 57.112 34.783 8.12 0.00 0.00 3.18
2016 8855 3.564511 ACAGCGATGAAAATTTTGACGG 58.435 40.909 8.12 0.00 0.00 4.79
2017 8856 3.252215 ACAGCGATGAAAATTTTGACGGA 59.748 39.130 8.12 0.00 0.00 4.69
2035 8874 2.659800 AGGAGACGAGTCCTTGGTG 58.340 57.895 4.70 0.00 45.39 4.17
2038 8877 1.550976 GGAGACGAGTCCTTGGTGATT 59.449 52.381 0.00 0.00 33.30 2.57
2050 8889 4.019051 TCCTTGGTGATTGATGTGATGAGT 60.019 41.667 0.00 0.00 0.00 3.41
2053 8892 5.937975 TGGTGATTGATGTGATGAGTAGA 57.062 39.130 0.00 0.00 0.00 2.59
2059 8898 4.397481 TGATGTGATGAGTAGAAGCCAG 57.603 45.455 0.00 0.00 0.00 4.85
2061 8900 1.833630 TGTGATGAGTAGAAGCCAGGG 59.166 52.381 0.00 0.00 0.00 4.45
2094 8933 2.378208 TGGGATTCAACATGGACAAGGA 59.622 45.455 0.00 0.00 0.00 3.36
2099 8938 6.064060 GGATTCAACATGGACAAGGATATCA 58.936 40.000 4.83 0.00 0.00 2.15
2123 8962 0.248215 GGCTGCCGAAATGTTCATCG 60.248 55.000 1.35 0.00 38.74 3.84
2131 8970 4.003519 CGAAATGTTCATCGGAAGGTTC 57.996 45.455 0.00 0.00 35.49 3.62
2133 8972 2.420058 ATGTTCATCGGAAGGTTCCC 57.580 50.000 3.08 0.00 44.67 3.97
2135 8974 2.542550 TGTTCATCGGAAGGTTCCCTA 58.457 47.619 3.08 0.00 44.67 3.53
2139 8978 3.178865 TCATCGGAAGGTTCCCTAAGTT 58.821 45.455 3.08 0.00 44.67 2.66
2140 8979 3.197116 TCATCGGAAGGTTCCCTAAGTTC 59.803 47.826 3.08 0.00 44.67 3.01
2152 8991 5.304686 TCCCTAAGTTCATGAACACAAGT 57.695 39.130 33.92 15.14 43.47 3.16
2172 9011 7.706179 CACAAGTTGGAAGTTTTGACACATATT 59.294 33.333 7.96 0.00 0.00 1.28
2179 9018 8.726988 TGGAAGTTTTGACACATATTTAGCTAC 58.273 33.333 0.00 0.00 0.00 3.58
2180 9019 8.726988 GGAAGTTTTGACACATATTTAGCTACA 58.273 33.333 0.00 0.00 0.00 2.74
2203 9042 6.867816 ACATGCTAAATTGTGTATTTGGTGTG 59.132 34.615 0.00 0.00 37.13 3.82
2204 9043 6.398234 TGCTAAATTGTGTATTTGGTGTGT 57.602 33.333 0.00 0.00 37.13 3.72
2206 9045 5.118510 GCTAAATTGTGTATTTGGTGTGTGC 59.881 40.000 0.00 0.00 37.13 4.57
2208 9047 0.947960 TGTGTATTTGGTGTGTGCGG 59.052 50.000 0.00 0.00 0.00 5.69
2210 9049 1.211709 GTATTTGGTGTGTGCGGGC 59.788 57.895 0.00 0.00 0.00 6.13
2211 9050 2.328856 TATTTGGTGTGTGCGGGCG 61.329 57.895 0.00 0.00 0.00 6.13
2228 9067 1.269448 GGCGCACATTGAAGGAAAGAA 59.731 47.619 10.83 0.00 0.00 2.52
2231 9070 3.801594 GCGCACATTGAAGGAAAGAAAAA 59.198 39.130 0.30 0.00 0.00 1.94
2232 9071 4.318050 GCGCACATTGAAGGAAAGAAAAAC 60.318 41.667 0.30 0.00 0.00 2.43
2233 9072 4.085619 CGCACATTGAAGGAAAGAAAAACG 60.086 41.667 0.00 0.00 0.00 3.60
2234 9073 4.318050 GCACATTGAAGGAAAGAAAAACGC 60.318 41.667 0.00 0.00 0.00 4.84
2236 9075 5.519927 CACATTGAAGGAAAGAAAAACGCTT 59.480 36.000 0.00 0.00 0.00 4.68
2239 9078 7.222031 ACATTGAAGGAAAGAAAAACGCTTAAC 59.778 33.333 0.00 0.00 0.00 2.01
2241 9080 7.556733 TGAAGGAAAGAAAAACGCTTAACTA 57.443 32.000 0.00 0.00 0.00 2.24
2256 9095 8.959734 ACGCTTAACTAAATTGTTTGGATTAC 57.040 30.769 0.00 0.00 0.00 1.89
2273 9112 8.568676 TTGGATTACAAATCTTTTATCCGACA 57.431 30.769 0.00 0.00 35.79 4.35
2274 9113 8.568676 TGGATTACAAATCTTTTATCCGACAA 57.431 30.769 0.00 0.00 35.43 3.18
2275 9114 9.015367 TGGATTACAAATCTTTTATCCGACAAA 57.985 29.630 0.00 0.00 35.43 2.83
2276 9115 9.503427 GGATTACAAATCTTTTATCCGACAAAG 57.497 33.333 0.11 0.00 0.00 2.77
2279 9118 7.745620 ACAAATCTTTTATCCGACAAAGAGT 57.254 32.000 9.44 5.37 41.26 3.24
2280 9119 8.842358 ACAAATCTTTTATCCGACAAAGAGTA 57.158 30.769 9.44 0.00 41.26 2.59
2281 9120 8.936864 ACAAATCTTTTATCCGACAAAGAGTAG 58.063 33.333 9.44 5.44 41.26 2.57
2282 9121 9.151471 CAAATCTTTTATCCGACAAAGAGTAGA 57.849 33.333 9.44 0.00 41.26 2.59
2283 9122 9.892130 AAATCTTTTATCCGACAAAGAGTAGAT 57.108 29.630 9.44 0.00 41.26 1.98
2292 9131 7.152645 TCCGACAAAGAGTAGATATTATTGGC 58.847 38.462 0.00 0.00 0.00 4.52
2293 9132 7.015292 TCCGACAAAGAGTAGATATTATTGGCT 59.985 37.037 0.00 0.00 0.00 4.75
2294 9133 7.329717 CCGACAAAGAGTAGATATTATTGGCTC 59.670 40.741 0.00 0.00 0.00 4.70
2295 9134 7.867909 CGACAAAGAGTAGATATTATTGGCTCA 59.132 37.037 0.00 0.00 0.00 4.26
2296 9135 9.547753 GACAAAGAGTAGATATTATTGGCTCAA 57.452 33.333 0.00 0.00 0.00 3.02
2297 9136 9.905713 ACAAAGAGTAGATATTATTGGCTCAAA 57.094 29.630 0.00 0.00 0.00 2.69
2312 9151 8.767478 ATTGGCTCAAAATAAAACATCAAGAG 57.233 30.769 0.00 0.00 0.00 2.85
2313 9152 7.523293 TGGCTCAAAATAAAACATCAAGAGA 57.477 32.000 0.00 0.00 0.00 3.10
2314 9153 7.950512 TGGCTCAAAATAAAACATCAAGAGAA 58.049 30.769 0.00 0.00 0.00 2.87
2315 9154 8.587608 TGGCTCAAAATAAAACATCAAGAGAAT 58.412 29.630 0.00 0.00 0.00 2.40
2328 9167 9.903682 AACATCAAGAGAATACAAAACAAGATG 57.096 29.630 0.00 0.00 35.41 2.90
2329 9168 9.288576 ACATCAAGAGAATACAAAACAAGATGA 57.711 29.630 0.00 0.00 33.95 2.92
2330 9169 9.770503 CATCAAGAGAATACAAAACAAGATGAG 57.229 33.333 0.00 0.00 32.06 2.90
2331 9170 7.810658 TCAAGAGAATACAAAACAAGATGAGC 58.189 34.615 0.00 0.00 0.00 4.26
2332 9171 7.445096 TCAAGAGAATACAAAACAAGATGAGCA 59.555 33.333 0.00 0.00 0.00 4.26
2333 9172 7.138692 AGAGAATACAAAACAAGATGAGCAC 57.861 36.000 0.00 0.00 0.00 4.40
2334 9173 6.712095 AGAGAATACAAAACAAGATGAGCACA 59.288 34.615 0.00 0.00 0.00 4.57
2335 9174 6.672147 AGAATACAAAACAAGATGAGCACAC 58.328 36.000 0.00 0.00 0.00 3.82
2336 9175 6.262944 AGAATACAAAACAAGATGAGCACACA 59.737 34.615 0.00 0.00 0.00 3.72
2337 9176 4.032703 ACAAAACAAGATGAGCACACAC 57.967 40.909 0.00 0.00 0.00 3.82
2338 9177 3.696051 ACAAAACAAGATGAGCACACACT 59.304 39.130 0.00 0.00 0.00 3.55
2339 9178 4.158394 ACAAAACAAGATGAGCACACACTT 59.842 37.500 0.00 0.00 0.00 3.16
2340 9179 3.976793 AACAAGATGAGCACACACTTG 57.023 42.857 21.61 21.61 42.90 3.16
2341 9180 2.224606 ACAAGATGAGCACACACTTGG 58.775 47.619 24.52 13.87 42.27 3.61
2342 9181 1.068748 CAAGATGAGCACACACTTGGC 60.069 52.381 18.11 0.00 38.62 4.52
2343 9182 0.607489 AGATGAGCACACACTTGGCC 60.607 55.000 0.00 0.00 0.00 5.36
2344 9183 0.607489 GATGAGCACACACTTGGCCT 60.607 55.000 3.32 0.00 0.00 5.19
2345 9184 0.607489 ATGAGCACACACTTGGCCTC 60.607 55.000 3.32 0.00 0.00 4.70
2346 9185 1.072159 GAGCACACACTTGGCCTCT 59.928 57.895 3.32 0.00 0.00 3.69
2347 9186 1.228063 AGCACACACTTGGCCTCTG 60.228 57.895 3.32 0.00 0.00 3.35
2348 9187 2.912624 GCACACACTTGGCCTCTGC 61.913 63.158 3.32 0.00 0.00 4.26
2349 9188 1.526686 CACACACTTGGCCTCTGCA 60.527 57.895 3.32 0.00 40.13 4.41
2350 9189 0.892358 CACACACTTGGCCTCTGCAT 60.892 55.000 3.32 0.00 40.13 3.96
2351 9190 0.692476 ACACACTTGGCCTCTGCATA 59.308 50.000 3.32 0.00 40.13 3.14
2352 9191 1.339438 ACACACTTGGCCTCTGCATAG 60.339 52.381 3.32 0.00 40.13 2.23
2353 9192 0.393537 ACACTTGGCCTCTGCATAGC 60.394 55.000 3.32 0.00 40.13 2.97
2354 9193 0.107312 CACTTGGCCTCTGCATAGCT 60.107 55.000 3.32 0.00 40.13 3.32
2355 9194 1.139654 CACTTGGCCTCTGCATAGCTA 59.860 52.381 3.32 0.00 40.13 3.32
2356 9195 1.415659 ACTTGGCCTCTGCATAGCTAG 59.584 52.381 3.32 0.00 40.13 3.42
2357 9196 1.690893 CTTGGCCTCTGCATAGCTAGA 59.309 52.381 3.32 0.00 40.13 2.43
2358 9197 1.793414 TGGCCTCTGCATAGCTAGAA 58.207 50.000 3.32 0.00 40.13 2.10
2359 9198 2.333069 TGGCCTCTGCATAGCTAGAAT 58.667 47.619 3.32 0.00 40.13 2.40
2360 9199 2.038164 TGGCCTCTGCATAGCTAGAATG 59.962 50.000 3.32 0.00 40.13 2.67
2370 9209 4.445453 CATAGCTAGAATGCAGACAACCA 58.555 43.478 0.00 0.00 34.99 3.67
2371 9210 3.423539 AGCTAGAATGCAGACAACCAA 57.576 42.857 0.00 0.00 34.99 3.67
2372 9211 3.077359 AGCTAGAATGCAGACAACCAAC 58.923 45.455 0.00 0.00 34.99 3.77
2373 9212 2.813754 GCTAGAATGCAGACAACCAACA 59.186 45.455 0.00 0.00 0.00 3.33
2374 9213 3.365364 GCTAGAATGCAGACAACCAACAC 60.365 47.826 0.00 0.00 0.00 3.32
2375 9214 1.956477 AGAATGCAGACAACCAACACC 59.044 47.619 0.00 0.00 0.00 4.16
2376 9215 1.680735 GAATGCAGACAACCAACACCA 59.319 47.619 0.00 0.00 0.00 4.17
2377 9216 1.774110 ATGCAGACAACCAACACCAA 58.226 45.000 0.00 0.00 0.00 3.67
2378 9217 0.814457 TGCAGACAACCAACACCAAC 59.186 50.000 0.00 0.00 0.00 3.77
2379 9218 0.814457 GCAGACAACCAACACCAACA 59.186 50.000 0.00 0.00 0.00 3.33
2380 9219 1.469079 GCAGACAACCAACACCAACAC 60.469 52.381 0.00 0.00 0.00 3.32
2381 9220 1.815613 CAGACAACCAACACCAACACA 59.184 47.619 0.00 0.00 0.00 3.72
2382 9221 1.816224 AGACAACCAACACCAACACAC 59.184 47.619 0.00 0.00 0.00 3.82
2383 9222 1.542030 GACAACCAACACCAACACACA 59.458 47.619 0.00 0.00 0.00 3.72
2384 9223 1.271102 ACAACCAACACCAACACACAC 59.729 47.619 0.00 0.00 0.00 3.82
2385 9224 0.523966 AACCAACACCAACACACACG 59.476 50.000 0.00 0.00 0.00 4.49
2386 9225 1.226547 CCAACACCAACACACACGC 60.227 57.895 0.00 0.00 0.00 5.34
2387 9226 1.503994 CAACACCAACACACACGCA 59.496 52.632 0.00 0.00 0.00 5.24
2388 9227 0.109551 CAACACCAACACACACGCAA 60.110 50.000 0.00 0.00 0.00 4.85
2389 9228 0.598562 AACACCAACACACACGCAAA 59.401 45.000 0.00 0.00 0.00 3.68
2390 9229 0.598562 ACACCAACACACACGCAAAA 59.401 45.000 0.00 0.00 0.00 2.44
2391 9230 1.000163 ACACCAACACACACGCAAAAA 60.000 42.857 0.00 0.00 0.00 1.94
2392 9231 1.388431 CACCAACACACACGCAAAAAC 59.612 47.619 0.00 0.00 0.00 2.43
2393 9232 1.000163 ACCAACACACACGCAAAAACA 60.000 42.857 0.00 0.00 0.00 2.83
2394 9233 2.266554 CCAACACACACGCAAAAACAT 58.733 42.857 0.00 0.00 0.00 2.71
2395 9234 2.029003 CCAACACACACGCAAAAACATG 59.971 45.455 0.00 0.00 0.00 3.21
2396 9235 1.276415 ACACACACGCAAAAACATGC 58.724 45.000 0.00 0.00 42.94 4.06
2397 9236 0.576328 CACACACGCAAAAACATGCC 59.424 50.000 0.00 0.00 43.47 4.40
2398 9237 0.174389 ACACACGCAAAAACATGCCA 59.826 45.000 0.00 0.00 43.47 4.92
2399 9238 1.284657 CACACGCAAAAACATGCCAA 58.715 45.000 0.00 0.00 43.47 4.52
2400 9239 1.005137 CACACGCAAAAACATGCCAAC 60.005 47.619 0.00 0.00 43.47 3.77
2401 9240 1.284657 CACGCAAAAACATGCCAACA 58.715 45.000 0.00 0.00 43.47 3.33
2402 9241 1.662629 CACGCAAAAACATGCCAACAA 59.337 42.857 0.00 0.00 43.47 2.83
2403 9242 1.663135 ACGCAAAAACATGCCAACAAC 59.337 42.857 0.00 0.00 43.47 3.32
2404 9243 1.932511 CGCAAAAACATGCCAACAACT 59.067 42.857 0.00 0.00 43.47 3.16
2405 9244 3.119291 CGCAAAAACATGCCAACAACTA 58.881 40.909 0.00 0.00 43.47 2.24
2406 9245 3.182173 CGCAAAAACATGCCAACAACTAG 59.818 43.478 0.00 0.00 43.47 2.57
2407 9246 3.494251 GCAAAAACATGCCAACAACTAGG 59.506 43.478 0.00 0.00 40.49 3.02
2408 9247 4.739137 GCAAAAACATGCCAACAACTAGGA 60.739 41.667 0.00 0.00 40.49 2.94
2409 9248 5.355596 CAAAAACATGCCAACAACTAGGAA 58.644 37.500 0.00 0.00 0.00 3.36
2410 9249 5.606348 AAAACATGCCAACAACTAGGAAA 57.394 34.783 0.00 0.00 0.00 3.13
2411 9250 4.853924 AACATGCCAACAACTAGGAAAG 57.146 40.909 0.00 0.00 0.00 2.62
2412 9251 3.832527 ACATGCCAACAACTAGGAAAGT 58.167 40.909 0.00 0.00 41.49 2.66
2449 9288 7.997773 AAACTATGCTATATGTAGACGAGGA 57.002 36.000 0.00 0.00 0.00 3.71
2450 9289 7.997773 AACTATGCTATATGTAGACGAGGAA 57.002 36.000 0.00 0.00 0.00 3.36
2451 9290 7.997773 ACTATGCTATATGTAGACGAGGAAA 57.002 36.000 0.00 0.00 0.00 3.13
2452 9291 8.405418 ACTATGCTATATGTAGACGAGGAAAA 57.595 34.615 0.00 0.00 0.00 2.29
2453 9292 8.857098 ACTATGCTATATGTAGACGAGGAAAAA 58.143 33.333 0.00 0.00 0.00 1.94
2472 9311 4.972751 AAAAGAAAATAGCCCCAAAGCA 57.027 36.364 0.00 0.00 34.23 3.91
2473 9312 4.972751 AAAGAAAATAGCCCCAAAGCAA 57.027 36.364 0.00 0.00 34.23 3.91
2474 9313 5.503634 AAAGAAAATAGCCCCAAAGCAAT 57.496 34.783 0.00 0.00 34.23 3.56
2475 9314 4.743057 AGAAAATAGCCCCAAAGCAATC 57.257 40.909 0.00 0.00 34.23 2.67
2476 9315 4.095946 AGAAAATAGCCCCAAAGCAATCA 58.904 39.130 0.00 0.00 34.23 2.57
2479 9318 2.530460 TAGCCCCAAAGCAATCACAT 57.470 45.000 0.00 0.00 34.23 3.21
2484 9323 2.101917 CCCCAAAGCAATCACATCCATC 59.898 50.000 0.00 0.00 0.00 3.51
2489 9328 6.444633 CCAAAGCAATCACATCCATCTTATC 58.555 40.000 0.00 0.00 0.00 1.75
2508 9351 6.825213 TCTTATCACACCAAATGGAGAGATTG 59.175 38.462 13.10 8.46 37.33 2.67
2517 9360 5.159209 CAAATGGAGAGATTGTTCAACAGC 58.841 41.667 0.00 0.00 0.00 4.40
2520 9363 4.206375 TGGAGAGATTGTTCAACAGCAAA 58.794 39.130 0.00 0.00 0.00 3.68
2521 9364 4.644234 TGGAGAGATTGTTCAACAGCAAAA 59.356 37.500 0.00 0.00 0.00 2.44
2523 9366 5.221126 GGAGAGATTGTTCAACAGCAAAACT 60.221 40.000 0.00 0.00 0.00 2.66
2528 9371 5.837586 TTGTTCAACAGCAAAACTTTCAC 57.162 34.783 0.00 0.00 0.00 3.18
2532 9375 4.799678 TCAACAGCAAAACTTTCACGAAA 58.200 34.783 0.00 0.00 0.00 3.46
2546 9389 0.387929 ACGAAAGGAGTGACGCTCAA 59.612 50.000 17.46 0.00 45.88 3.02
2548 9391 0.793250 GAAAGGAGTGACGCTCAAGC 59.207 55.000 17.46 0.81 45.88 4.01
2577 9420 1.449601 CCGGATCCAACGACCAAGG 60.450 63.158 13.41 0.00 0.00 3.61
2585 9428 1.339631 CCAACGACCAAGGCCAGAATA 60.340 52.381 5.01 0.00 0.00 1.75
2603 9446 8.730680 GCCAGAATATAAGTTTTCACTCTGAAA 58.269 33.333 0.00 0.00 43.84 2.69
2631 9474 6.641169 AGTCTGAGCATATTCGAGTAATGA 57.359 37.500 7.63 0.00 0.00 2.57
2645 9489 7.591006 TCGAGTAATGATTCAACAAGGTAAC 57.409 36.000 0.00 0.00 0.00 2.50
2707 9553 4.202264 CGGTTCAGATATAGGCTTTCACCT 60.202 45.833 0.00 0.00 44.31 4.00
2718 9564 0.456995 CTTTCACCTCGGAGCTCGAC 60.457 60.000 7.83 0.00 43.74 4.20
2719 9565 1.176619 TTTCACCTCGGAGCTCGACA 61.177 55.000 7.83 0.00 43.74 4.35
2722 9568 2.202492 CCTCGGAGCTCGACAACG 60.202 66.667 7.83 5.26 43.74 4.10
2723 9569 2.687805 CCTCGGAGCTCGACAACGA 61.688 63.158 7.83 9.62 43.74 3.85
2744 9590 1.079197 TGCATGAGTAGCACCACCG 60.079 57.895 0.00 0.00 37.02 4.94
2747 9593 0.246360 CATGAGTAGCACCACCGTCA 59.754 55.000 0.00 0.00 0.00 4.35
2748 9594 0.246635 ATGAGTAGCACCACCGTCAC 59.753 55.000 0.00 0.00 0.00 3.67
2765 9611 3.000041 GTCACAGTCACTTGTGTTGTCA 59.000 45.455 6.10 0.00 46.60 3.58
2779 9625 2.096248 GTTGTCACCACCACTTTTCCA 58.904 47.619 0.00 0.00 0.00 3.53
2783 9629 2.096248 TCACCACCACTTTTCCACAAC 58.904 47.619 0.00 0.00 0.00 3.32
2785 9631 0.750249 CCACCACTTTTCCACAACCC 59.250 55.000 0.00 0.00 0.00 4.11
2788 9634 1.273324 ACCACTTTTCCACAACCCCAA 60.273 47.619 0.00 0.00 0.00 4.12
2794 9640 0.847373 TTCCACAACCCCAACAGCTA 59.153 50.000 0.00 0.00 0.00 3.32
2816 9662 2.244651 GCGATATGTGACCGCCACC 61.245 63.158 0.00 0.00 45.09 4.61
2834 9680 3.818787 GCTGCGCAACCATCCCTG 61.819 66.667 13.05 0.00 0.00 4.45
2836 9682 2.672651 TGCGCAACCATCCCTGTG 60.673 61.111 8.16 0.00 0.00 3.66
2844 9690 1.140312 ACCATCCCTGTGTGTCAAGT 58.860 50.000 0.00 0.00 0.00 3.16
2845 9691 1.494721 ACCATCCCTGTGTGTCAAGTT 59.505 47.619 0.00 0.00 0.00 2.66
2846 9692 1.881973 CCATCCCTGTGTGTCAAGTTG 59.118 52.381 0.00 0.00 0.00 3.16
2849 9695 0.937304 CCCTGTGTGTCAAGTTGTCG 59.063 55.000 2.11 0.00 0.00 4.35
2861 9707 3.554324 TCAAGTTGTCGTCTGTAGTTTGC 59.446 43.478 2.11 0.00 0.00 3.68
2866 9712 3.990092 TGTCGTCTGTAGTTTGCATCTT 58.010 40.909 0.00 0.00 0.00 2.40
2875 9721 0.800012 GTTTGCATCTTACCGCCGAA 59.200 50.000 0.00 0.00 0.00 4.30
2881 9727 1.659098 CATCTTACCGCCGAAGTCAAC 59.341 52.381 0.00 0.00 0.00 3.18
2884 9730 0.322322 TTACCGCCGAAGTCAACCAT 59.678 50.000 0.00 0.00 0.00 3.55
2893 9739 2.555199 GAAGTCAACCATCGGATCTGG 58.445 52.381 0.62 0.00 39.80 3.86
2899 9745 2.632028 CAACCATCGGATCTGGAGAGAT 59.368 50.000 6.49 0.00 42.02 2.75
2905 9751 4.439253 TCGGATCTGGAGAGATGAACTA 57.561 45.455 0.62 0.00 39.19 2.24
2906 9752 4.138290 TCGGATCTGGAGAGATGAACTAC 58.862 47.826 0.62 0.00 39.19 2.73
2907 9753 4.141287 CGGATCTGGAGAGATGAACTACT 58.859 47.826 0.00 0.00 39.19 2.57
2908 9754 4.582656 CGGATCTGGAGAGATGAACTACTT 59.417 45.833 0.00 0.00 39.19 2.24
2909 9755 5.765677 CGGATCTGGAGAGATGAACTACTTA 59.234 44.000 0.00 0.00 39.19 2.24
2917 9764 8.908903 TGGAGAGATGAACTACTTAAAGATCTC 58.091 37.037 0.00 0.00 36.26 2.75
2918 9765 9.131791 GGAGAGATGAACTACTTAAAGATCTCT 57.868 37.037 0.00 0.00 44.61 3.10
2925 9772 8.088981 TGAACTACTTAAAGATCTCTTGGTGAC 58.911 37.037 0.00 0.00 36.12 3.67
2947 9794 1.885388 CGTTGTCGTGGAGCCACAA 60.885 57.895 18.85 0.00 46.47 3.33
2949 9796 0.814010 GTTGTCGTGGAGCCACAAGT 60.814 55.000 18.85 0.00 46.47 3.16
2969 9816 0.798776 GGTCGTTCCAGCACAATCTG 59.201 55.000 0.00 0.00 35.97 2.90
2978 9825 1.443194 GCACAATCTGCAGCAACCG 60.443 57.895 9.47 0.00 46.29 4.44
2985 9832 3.899981 CTGCAGCAACCGCCACCTA 62.900 63.158 0.00 0.00 39.83 3.08
2986 9833 2.671619 GCAGCAACCGCCACCTAA 60.672 61.111 0.00 0.00 39.83 2.69
2992 9839 0.675522 CAACCGCCACCTAACCGATT 60.676 55.000 0.00 0.00 0.00 3.34
2996 9843 1.537562 CCGCCACCTAACCGATTAGAC 60.538 57.143 0.00 0.00 40.38 2.59
3001 9848 0.318445 CCTAACCGATTAGACCCGCG 60.318 60.000 0.00 0.00 40.38 6.46
3004 9851 1.597797 AACCGATTAGACCCGCGTCA 61.598 55.000 4.92 0.00 41.87 4.35
3011 9858 4.612412 GACCCGCGTCACCACCAA 62.612 66.667 4.92 0.00 38.99 3.67
3019 9866 2.203280 TCACCACCAACAAGCCCG 60.203 61.111 0.00 0.00 0.00 6.13
3028 9875 0.962356 CAACAAGCCCGCCAGATCTT 60.962 55.000 0.00 0.00 0.00 2.40
3029 9876 0.618458 AACAAGCCCGCCAGATCTTA 59.382 50.000 0.00 0.00 0.00 2.10
3030 9877 0.839946 ACAAGCCCGCCAGATCTTAT 59.160 50.000 0.00 0.00 0.00 1.73
3031 9878 2.047061 ACAAGCCCGCCAGATCTTATA 58.953 47.619 0.00 0.00 0.00 0.98
3032 9879 2.639839 ACAAGCCCGCCAGATCTTATAT 59.360 45.455 0.00 0.00 0.00 0.86
3033 9880 3.073062 ACAAGCCCGCCAGATCTTATATT 59.927 43.478 0.00 0.00 0.00 1.28
3034 9881 3.340814 AGCCCGCCAGATCTTATATTG 57.659 47.619 0.00 0.00 0.00 1.90
3035 9882 2.906389 AGCCCGCCAGATCTTATATTGA 59.094 45.455 0.00 0.00 0.00 2.57
3036 9883 3.003480 GCCCGCCAGATCTTATATTGAC 58.997 50.000 0.00 0.00 0.00 3.18
3037 9884 3.254060 CCCGCCAGATCTTATATTGACG 58.746 50.000 0.00 0.00 0.00 4.35
3038 9885 3.306088 CCCGCCAGATCTTATATTGACGT 60.306 47.826 0.00 0.00 0.00 4.34
3039 9886 4.082408 CCCGCCAGATCTTATATTGACGTA 60.082 45.833 0.00 0.00 0.00 3.57
3040 9887 5.394224 CCCGCCAGATCTTATATTGACGTAT 60.394 44.000 0.00 0.00 0.00 3.06
3041 9888 6.183360 CCCGCCAGATCTTATATTGACGTATA 60.183 42.308 0.00 0.00 0.00 1.47
3042 9889 7.255569 CCGCCAGATCTTATATTGACGTATAA 58.744 38.462 0.00 0.00 0.00 0.98
3043 9890 7.758076 CCGCCAGATCTTATATTGACGTATAAA 59.242 37.037 0.00 0.00 0.00 1.40
3044 9891 9.302345 CGCCAGATCTTATATTGACGTATAAAT 57.698 33.333 0.00 0.00 0.00 1.40
3073 9920 8.507524 TTGACTAGTCTCTTTCATTAGATCGA 57.492 34.615 23.01 0.00 0.00 3.59
3074 9921 8.684386 TGACTAGTCTCTTTCATTAGATCGAT 57.316 34.615 23.01 0.00 0.00 3.59
3075 9922 8.779303 TGACTAGTCTCTTTCATTAGATCGATC 58.221 37.037 23.01 17.91 0.00 3.69
3076 9923 8.918202 ACTAGTCTCTTTCATTAGATCGATCT 57.082 34.615 29.58 29.58 40.86 2.75
3077 9924 9.349713 ACTAGTCTCTTTCATTAGATCGATCTT 57.650 33.333 31.55 13.44 38.32 2.40
3080 9927 9.311916 AGTCTCTTTCATTAGATCGATCTTTTG 57.688 33.333 31.55 25.93 38.32 2.44
3081 9928 8.547069 GTCTCTTTCATTAGATCGATCTTTTGG 58.453 37.037 31.55 18.50 38.32 3.28
3082 9929 8.260818 TCTCTTTCATTAGATCGATCTTTTGGT 58.739 33.333 31.55 10.38 38.32 3.67
3083 9930 8.792830 TCTTTCATTAGATCGATCTTTTGGTT 57.207 30.769 31.55 9.64 38.32 3.67
3084 9931 8.668353 TCTTTCATTAGATCGATCTTTTGGTTG 58.332 33.333 31.55 18.68 38.32 3.77
3085 9932 6.363577 TCATTAGATCGATCTTTTGGTTGC 57.636 37.500 31.55 0.00 38.32 4.17
3086 9933 5.879777 TCATTAGATCGATCTTTTGGTTGCA 59.120 36.000 31.55 8.88 38.32 4.08
3087 9934 6.543465 TCATTAGATCGATCTTTTGGTTGCAT 59.457 34.615 31.55 6.91 38.32 3.96
3088 9935 6.757897 TTAGATCGATCTTTTGGTTGCATT 57.242 33.333 31.55 6.71 38.32 3.56
3089 9936 4.990257 AGATCGATCTTTTGGTTGCATTG 58.010 39.130 22.32 0.00 31.97 2.82
3090 9937 3.574284 TCGATCTTTTGGTTGCATTGG 57.426 42.857 0.00 0.00 0.00 3.16
3091 9938 1.994779 CGATCTTTTGGTTGCATTGGC 59.005 47.619 0.00 0.00 41.68 4.52
3092 9939 2.353011 CGATCTTTTGGTTGCATTGGCT 60.353 45.455 0.00 0.00 41.91 4.75
3093 9940 3.119531 CGATCTTTTGGTTGCATTGGCTA 60.120 43.478 0.00 0.00 41.91 3.93
3094 9941 3.940209 TCTTTTGGTTGCATTGGCTAG 57.060 42.857 0.00 0.00 41.91 3.42
3095 9942 3.495331 TCTTTTGGTTGCATTGGCTAGA 58.505 40.909 0.00 0.00 41.91 2.43
3096 9943 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
3097 9944 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
3098 9945 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
3099 9946 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
3100 9947 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
3101 9948 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
3102 9949 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
3103 9950 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
3104 9951 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
3105 9952 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
3106 9953 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
3107 9954 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
3108 9955 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
3109 9956 2.702478 TGGCTAGAGCATGCACTTCTAT 59.298 45.455 22.83 0.00 44.36 1.98
3110 9957 3.897505 TGGCTAGAGCATGCACTTCTATA 59.102 43.478 22.83 3.70 44.36 1.31
3111 9958 4.529769 TGGCTAGAGCATGCACTTCTATAT 59.470 41.667 22.83 0.00 44.36 0.86
3112 9959 4.869297 GGCTAGAGCATGCACTTCTATATG 59.131 45.833 22.83 8.90 44.36 1.78
3113 9960 4.869297 GCTAGAGCATGCACTTCTATATGG 59.131 45.833 22.83 8.58 41.59 2.74
3114 9961 4.970860 AGAGCATGCACTTCTATATGGT 57.029 40.909 21.98 0.00 34.33 3.55
3115 9962 6.350528 GCTAGAGCATGCACTTCTATATGGTA 60.351 42.308 22.83 0.01 41.59 3.25
3116 9963 6.617782 AGAGCATGCACTTCTATATGGTAT 57.382 37.500 21.98 0.00 32.07 2.73
3117 9964 6.638610 AGAGCATGCACTTCTATATGGTATC 58.361 40.000 21.98 2.25 32.07 2.24
3118 9965 5.414360 AGCATGCACTTCTATATGGTATCG 58.586 41.667 21.98 0.00 30.33 2.92
3119 9966 5.185828 AGCATGCACTTCTATATGGTATCGA 59.814 40.000 21.98 0.00 30.33 3.59
3120 9967 5.869344 GCATGCACTTCTATATGGTATCGAA 59.131 40.000 14.21 0.00 0.00 3.71
3121 9968 6.368791 GCATGCACTTCTATATGGTATCGAAA 59.631 38.462 14.21 0.00 0.00 3.46
3122 9969 7.622256 GCATGCACTTCTATATGGTATCGAAAC 60.622 40.741 14.21 0.00 0.00 2.78
3123 9970 6.220930 TGCACTTCTATATGGTATCGAAACC 58.779 40.000 0.00 0.00 40.19 3.27
3149 9996 4.792087 TTGAGTTCAAGACCCGGC 57.208 55.556 0.00 0.00 0.00 6.13
3150 9997 2.142220 TTGAGTTCAAGACCCGGCT 58.858 52.632 0.00 0.00 0.00 5.52
3151 9998 0.250295 TTGAGTTCAAGACCCGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
3152 9999 1.118965 TGAGTTCAAGACCCGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
3153 10000 0.670854 GAGTTCAAGACCCGGCTGAC 60.671 60.000 0.00 0.00 0.00 3.51
3154 10001 2.027625 GTTCAAGACCCGGCTGACG 61.028 63.158 0.00 0.00 43.80 4.35
3155 10002 3.876589 TTCAAGACCCGGCTGACGC 62.877 63.158 0.00 0.00 42.52 5.19
3156 10003 4.680237 CAAGACCCGGCTGACGCA 62.680 66.667 0.00 0.00 42.52 5.24
3157 10004 3.936203 AAGACCCGGCTGACGCAA 61.936 61.111 0.00 0.00 42.52 4.85
3158 10005 3.254024 AAGACCCGGCTGACGCAAT 62.254 57.895 0.00 0.00 42.52 3.56
3159 10006 2.746277 GACCCGGCTGACGCAATT 60.746 61.111 0.00 0.00 42.52 2.32
3160 10007 1.448893 GACCCGGCTGACGCAATTA 60.449 57.895 0.00 0.00 42.52 1.40
3161 10008 1.003112 ACCCGGCTGACGCAATTAA 60.003 52.632 0.00 0.00 42.52 1.40
3162 10009 0.606944 ACCCGGCTGACGCAATTAAA 60.607 50.000 0.00 0.00 42.52 1.52
3163 10010 0.098728 CCCGGCTGACGCAATTAAAG 59.901 55.000 0.00 0.00 42.52 1.85
3164 10011 0.802494 CCGGCTGACGCAATTAAAGT 59.198 50.000 0.00 0.00 42.52 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 187 9.232882 AGGAACTTATGGGGAAGTATGTATTAA 57.767 33.333 0.00 0.00 38.75 1.40
320 349 3.273434 CAACCACCATAGGTCATGTCAG 58.727 50.000 0.00 0.00 42.25 3.51
376 418 1.303561 TGAGGCTCCAATGGTGCAC 60.304 57.895 25.09 18.43 43.12 4.57
378 420 1.751927 CCTGAGGCTCCAATGGTGC 60.752 63.158 17.21 17.21 40.94 5.01
421 466 4.584325 GGATACAGAGATGAGAGAAGCTGT 59.416 45.833 0.00 0.00 39.61 4.40
485 546 3.269381 TGAAGGGAAATAAGTGGGATGCT 59.731 43.478 0.00 0.00 0.00 3.79
486 547 3.631250 TGAAGGGAAATAAGTGGGATGC 58.369 45.455 0.00 0.00 0.00 3.91
487 548 6.265422 GGTTATGAAGGGAAATAAGTGGGATG 59.735 42.308 0.00 0.00 0.00 3.51
488 549 6.068498 TGGTTATGAAGGGAAATAAGTGGGAT 60.068 38.462 0.00 0.00 0.00 3.85
489 550 5.254267 TGGTTATGAAGGGAAATAAGTGGGA 59.746 40.000 0.00 0.00 0.00 4.37
492 553 5.888161 AGCTGGTTATGAAGGGAAATAAGTG 59.112 40.000 0.00 0.00 0.00 3.16
648 728 1.444553 CGAGAGACCACGGCTGTTC 60.445 63.158 0.00 0.00 0.00 3.18
650 730 4.057428 GCGAGAGACCACGGCTGT 62.057 66.667 0.00 0.00 0.00 4.40
844 6115 1.078143 GAGGGGATGCAGTGTCCAC 60.078 63.158 7.13 3.00 39.55 4.02
898 6178 6.206048 TCACATGAATTAGCACATCATCATCC 59.794 38.462 0.00 0.00 31.65 3.51
914 6194 5.876460 TCATCGTTGTCTTGATCACATGAAT 59.124 36.000 0.00 0.00 33.22 2.57
931 6215 2.800985 CGACAGATGGCTCATCATCGTT 60.801 50.000 20.85 5.71 45.88 3.85
948 6232 1.478105 CTCCTGATCACATCCACGACA 59.522 52.381 0.00 0.00 0.00 4.35
997 6281 3.648067 TGGTCAATATCCTCCTCCATGTC 59.352 47.826 0.00 0.00 0.00 3.06
1056 6340 3.178865 ACCCTAAAATCCCTCGTTCAGA 58.821 45.455 0.00 0.00 0.00 3.27
1086 6375 3.364460 AAGCCAAGGTACATGCATGTA 57.636 42.857 31.03 31.03 41.97 2.29
1169 6475 1.609072 GTTTGTCAAGCCTCAACTCCC 59.391 52.381 0.00 0.00 0.00 4.30
1220 7678 6.552008 AGGGATCTTGGATGTTAACAAAAGA 58.448 36.000 23.13 23.13 32.38 2.52
1221 7679 6.434028 TGAGGGATCTTGGATGTTAACAAAAG 59.566 38.462 13.23 15.59 0.00 2.27
1246 7704 1.203025 CCTATAGAGGTGGGTACGGCT 60.203 57.143 0.00 0.00 38.16 5.52
1250 7708 5.190330 TGGTTTTTCCTATAGAGGTGGGTAC 59.810 44.000 2.72 0.00 44.19 3.34
1259 7717 6.608405 TCGGTGTAGATGGTTTTTCCTATAGA 59.392 38.462 0.00 0.00 37.07 1.98
1279 7737 1.005394 ACCCGCAAAGTACTCGGTG 60.005 57.895 17.40 12.25 41.46 4.94
1280 7738 1.291272 GACCCGCAAAGTACTCGGT 59.709 57.895 17.40 8.88 41.46 4.69
1298 7756 1.977594 GCCTGTGGATTTACACCGCG 61.978 60.000 0.00 0.00 40.62 6.46
1301 7759 2.200373 AGTGCCTGTGGATTTACACC 57.800 50.000 0.00 0.00 40.62 4.16
1317 7777 5.565592 ACATGTTGTATGTATGCCAAGTG 57.434 39.130 0.00 0.00 0.00 3.16
1350 7810 8.784994 TCTATTTGCCAAGTTTAATTTACACGA 58.215 29.630 0.00 0.00 0.00 4.35
1351 7811 8.958175 TCTATTTGCCAAGTTTAATTTACACG 57.042 30.769 0.00 0.00 0.00 4.49
1358 7818 8.879427 AGTACCTTCTATTTGCCAAGTTTAAT 57.121 30.769 0.00 0.00 0.00 1.40
1384 7844 2.358582 TCGCGAAGACCGAATATTACCA 59.641 45.455 6.20 0.00 41.76 3.25
1392 7852 0.313043 AGAAACTCGCGAAGACCGAA 59.687 50.000 11.33 0.00 41.76 4.30
1398 7858 0.320421 TTGGGGAGAAACTCGCGAAG 60.320 55.000 11.33 7.16 43.09 3.79
1404 7864 4.645136 AGTGTTCTTTTTGGGGAGAAACTC 59.355 41.667 0.00 0.00 34.00 3.01
1410 8028 2.294512 GCTGAGTGTTCTTTTTGGGGAG 59.705 50.000 0.00 0.00 0.00 4.30
1415 8033 6.791887 TCTCTATGCTGAGTGTTCTTTTTG 57.208 37.500 0.00 0.00 35.68 2.44
1416 8034 7.807977 TTTCTCTATGCTGAGTGTTCTTTTT 57.192 32.000 0.00 0.00 35.68 1.94
1419 8037 6.072783 GCTTTTTCTCTATGCTGAGTGTTCTT 60.073 38.462 0.00 0.00 35.68 2.52
1421 8039 5.391416 GGCTTTTTCTCTATGCTGAGTGTTC 60.391 44.000 0.00 0.00 35.68 3.18
1428 8046 2.611292 CTCGGGCTTTTTCTCTATGCTG 59.389 50.000 0.00 0.00 0.00 4.41
1429 8047 2.501723 TCTCGGGCTTTTTCTCTATGCT 59.498 45.455 0.00 0.00 0.00 3.79
1441 8059 0.110486 TTGCTTCCTTTCTCGGGCTT 59.890 50.000 0.00 0.00 0.00 4.35
1449 8067 4.363138 CCAAGTGTCTTTTGCTTCCTTTC 58.637 43.478 0.00 0.00 0.00 2.62
1482 8100 6.739565 GCACATGTTTTCCTTCCAGAGATTTT 60.740 38.462 0.00 0.00 0.00 1.82
1483 8101 5.279156 GCACATGTTTTCCTTCCAGAGATTT 60.279 40.000 0.00 0.00 0.00 2.17
1484 8102 4.219288 GCACATGTTTTCCTTCCAGAGATT 59.781 41.667 0.00 0.00 0.00 2.40
1485 8103 3.760684 GCACATGTTTTCCTTCCAGAGAT 59.239 43.478 0.00 0.00 0.00 2.75
1488 8106 3.228188 AGCACATGTTTTCCTTCCAGA 57.772 42.857 0.00 0.00 0.00 3.86
1489 8107 4.321230 GGTTAGCACATGTTTTCCTTCCAG 60.321 45.833 0.00 0.00 0.00 3.86
1491 8109 3.056821 GGGTTAGCACATGTTTTCCTTCC 60.057 47.826 0.00 0.00 0.00 3.46
1492 8110 3.572255 TGGGTTAGCACATGTTTTCCTTC 59.428 43.478 0.00 0.00 0.00 3.46
1494 8112 3.237268 TGGGTTAGCACATGTTTTCCT 57.763 42.857 0.00 0.00 0.00 3.36
1502 8120 3.255642 GTCAAACACATGGGTTAGCACAT 59.744 43.478 15.06 0.00 39.81 3.21
1503 8121 2.621055 GTCAAACACATGGGTTAGCACA 59.379 45.455 15.06 0.00 0.00 4.57
1504 8122 2.350388 CGTCAAACACATGGGTTAGCAC 60.350 50.000 15.06 9.91 0.00 4.40
1505 8123 1.876799 CGTCAAACACATGGGTTAGCA 59.123 47.619 15.06 0.00 0.00 3.49
1506 8124 1.199097 CCGTCAAACACATGGGTTAGC 59.801 52.381 15.06 6.46 0.00 3.09
1507 8125 2.482721 GACCGTCAAACACATGGGTTAG 59.517 50.000 15.06 6.19 0.00 2.34
1509 8127 1.314730 GACCGTCAAACACATGGGTT 58.685 50.000 7.75 7.75 0.00 4.11
1510 8128 0.536460 GGACCGTCAAACACATGGGT 60.536 55.000 0.00 0.00 0.00 4.51
1512 8130 1.573829 CGGGACCGTCAAACACATGG 61.574 60.000 1.86 0.00 34.35 3.66
1513 8131 1.866237 CGGGACCGTCAAACACATG 59.134 57.895 1.86 0.00 34.35 3.21
1514 8132 4.371975 CGGGACCGTCAAACACAT 57.628 55.556 1.86 0.00 34.35 3.21
1528 8168 0.672401 ACAACGCCTGATGTAACGGG 60.672 55.000 0.00 0.00 39.16 5.28
1531 8171 2.315901 GCAAACAACGCCTGATGTAAC 58.684 47.619 0.00 0.00 30.01 2.50
1607 8439 0.252197 AGGGTACTCGGCAAATGGTC 59.748 55.000 0.00 0.00 0.00 4.02
1611 8443 2.368875 CTCCATAGGGTACTCGGCAAAT 59.631 50.000 0.00 0.00 34.93 2.32
1618 8450 4.141914 CCAAGTGTTCTCCATAGGGTACTC 60.142 50.000 0.00 0.00 34.93 2.59
1661 8493 9.677567 GAAATGATCACTGCACTTTAAAAAGTA 57.322 29.630 7.73 0.00 46.89 2.24
1663 8495 7.379529 ACGAAATGATCACTGCACTTTAAAAAG 59.620 33.333 0.00 0.90 41.73 2.27
1672 8504 2.738846 ACTCACGAAATGATCACTGCAC 59.261 45.455 0.00 0.00 36.48 4.57
1687 8519 3.575630 CATTGGATATCGGGTACTCACG 58.424 50.000 0.00 0.00 42.43 4.35
1688 8520 3.326747 GCATTGGATATCGGGTACTCAC 58.673 50.000 0.00 0.00 0.00 3.51
1689 8521 2.301870 GGCATTGGATATCGGGTACTCA 59.698 50.000 0.00 0.00 0.00 3.41
1707 8539 4.704103 AGGACGAGGAGCCAGGCA 62.704 66.667 15.80 0.00 0.00 4.75
1724 8556 2.047370 TGCGATGAAGCGAGGCAA 60.047 55.556 0.00 0.00 40.67 4.52
1751 8583 1.298157 TTGAGAGATGGCGCAAACCG 61.298 55.000 10.83 0.00 40.75 4.44
1752 8584 1.098050 ATTGAGAGATGGCGCAAACC 58.902 50.000 10.83 0.00 0.00 3.27
1756 8588 0.471191 ATCCATTGAGAGATGGCGCA 59.529 50.000 10.83 0.00 45.07 6.09
1758 8590 1.000171 TCGATCCATTGAGAGATGGCG 60.000 52.381 0.00 0.00 45.07 5.69
1771 8603 0.828022 ACAATAAGGGCGTCGATCCA 59.172 50.000 0.00 0.00 0.00 3.41
1798 8632 0.324285 AGCTTGGCACTCTTCTCCAG 59.676 55.000 0.00 0.00 0.00 3.86
1799 8633 0.035881 CAGCTTGGCACTCTTCTCCA 59.964 55.000 0.00 0.00 0.00 3.86
1816 8650 2.358898 CCAAAGTCTTGTGGTTGTCCAG 59.641 50.000 5.92 0.00 45.24 3.86
1882 8719 6.161855 TCAATCGGTGCTAAATAGTGAGAT 57.838 37.500 0.00 0.00 0.00 2.75
1885 8722 5.056480 CCATCAATCGGTGCTAAATAGTGA 58.944 41.667 0.00 0.00 0.00 3.41
1889 8726 3.392947 TCCCCATCAATCGGTGCTAAATA 59.607 43.478 0.00 0.00 0.00 1.40
1898 8735 1.149174 CACCCTCCCCATCAATCGG 59.851 63.158 0.00 0.00 0.00 4.18
1899 8736 1.149174 CCACCCTCCCCATCAATCG 59.851 63.158 0.00 0.00 0.00 3.34
1901 8738 2.010067 CACCACCCTCCCCATCAAT 58.990 57.895 0.00 0.00 0.00 2.57
1908 8745 4.394712 CACGAGCACCACCCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
1909 8746 4.394712 CCACGAGCACCACCCTCC 62.395 72.222 0.00 0.00 0.00 4.30
1921 8758 2.662596 CAGTTAGGGCAGCCACGA 59.337 61.111 15.19 0.00 0.00 4.35
1922 8759 2.436646 CCAGTTAGGGCAGCCACG 60.437 66.667 15.19 0.00 0.00 4.94
1943 8782 1.611491 GTCGCTGAAAATGGGTTGGAA 59.389 47.619 0.00 0.00 0.00 3.53
1944 8783 1.243902 GTCGCTGAAAATGGGTTGGA 58.756 50.000 0.00 0.00 0.00 3.53
1945 8784 0.109781 CGTCGCTGAAAATGGGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
1948 8787 0.673644 CTCCGTCGCTGAAAATGGGT 60.674 55.000 0.00 0.00 0.00 4.51
1954 8793 2.400399 CAACTAACTCCGTCGCTGAAA 58.600 47.619 0.00 0.00 0.00 2.69
1964 8803 6.395629 TGTCAGTGTAATAGCAACTAACTCC 58.604 40.000 0.00 0.00 0.00 3.85
1974 8813 6.401153 GCTGTTGTACTTGTCAGTGTAATAGC 60.401 42.308 0.00 0.00 37.30 2.97
1989 8828 6.636850 GTCAAAATTTTCATCGCTGTTGTACT 59.363 34.615 0.00 0.00 0.00 2.73
1994 8833 3.980775 CCGTCAAAATTTTCATCGCTGTT 59.019 39.130 0.00 0.00 0.00 3.16
2001 8840 4.154195 CGTCTCCTCCGTCAAAATTTTCAT 59.846 41.667 0.00 0.00 0.00 2.57
2005 8844 3.244112 ACTCGTCTCCTCCGTCAAAATTT 60.244 43.478 0.00 0.00 0.00 1.82
2010 8849 0.959372 GGACTCGTCTCCTCCGTCAA 60.959 60.000 0.00 0.00 0.00 3.18
2011 8850 1.376942 GGACTCGTCTCCTCCGTCA 60.377 63.158 0.00 0.00 0.00 4.35
2014 8853 1.658686 CCAAGGACTCGTCTCCTCCG 61.659 65.000 4.41 0.59 40.04 4.63
2016 8855 0.528470 CACCAAGGACTCGTCTCCTC 59.472 60.000 4.41 0.00 40.04 3.71
2017 8856 0.112606 TCACCAAGGACTCGTCTCCT 59.887 55.000 0.00 0.00 43.08 3.69
2031 8870 5.937975 TCTACTCATCACATCAATCACCA 57.062 39.130 0.00 0.00 0.00 4.17
2035 8874 5.363101 TGGCTTCTACTCATCACATCAATC 58.637 41.667 0.00 0.00 0.00 2.67
2038 8877 3.133542 CCTGGCTTCTACTCATCACATCA 59.866 47.826 0.00 0.00 0.00 3.07
2059 8898 3.732849 CCCAACTCCTCAGCCCCC 61.733 72.222 0.00 0.00 0.00 5.40
2061 8900 0.106967 GAATCCCAACTCCTCAGCCC 60.107 60.000 0.00 0.00 0.00 5.19
2091 8930 0.475906 GGCAGCCTGGTTGATATCCT 59.524 55.000 15.24 0.00 0.00 3.24
2092 8931 0.886490 CGGCAGCCTGGTTGATATCC 60.886 60.000 15.24 4.87 0.00 2.59
2094 8933 0.546122 TTCGGCAGCCTGGTTGATAT 59.454 50.000 15.24 0.00 0.00 1.63
2099 8938 0.827507 AACATTTCGGCAGCCTGGTT 60.828 50.000 10.54 3.68 0.00 3.67
2128 8967 5.531287 ACTTGTGTTCATGAACTTAGGGAAC 59.469 40.000 32.57 22.51 41.67 3.62
2131 8970 5.278463 CCAACTTGTGTTCATGAACTTAGGG 60.278 44.000 32.57 21.65 41.67 3.53
2133 8972 6.618287 TCCAACTTGTGTTCATGAACTTAG 57.382 37.500 32.57 26.73 41.67 2.18
2135 8974 5.418840 ACTTCCAACTTGTGTTCATGAACTT 59.581 36.000 32.57 19.00 41.67 2.66
2139 8978 5.913137 AAACTTCCAACTTGTGTTCATGA 57.087 34.783 0.00 0.00 33.52 3.07
2140 8979 6.034898 GTCAAAACTTCCAACTTGTGTTCATG 59.965 38.462 0.00 0.00 33.52 3.07
2152 8991 8.177119 AGCTAAATATGTGTCAAAACTTCCAA 57.823 30.769 0.00 0.00 0.00 3.53
2179 9018 6.867816 ACACACCAAATACACAATTTAGCATG 59.132 34.615 0.00 0.00 35.54 4.06
2180 9019 6.867816 CACACACCAAATACACAATTTAGCAT 59.132 34.615 0.00 0.00 35.54 3.79
2206 9045 1.861542 TTTCCTTCAATGTGCGCCCG 61.862 55.000 4.18 0.00 0.00 6.13
2208 9047 0.881118 TCTTTCCTTCAATGTGCGCC 59.119 50.000 4.18 0.00 0.00 6.53
2210 9049 4.085619 CGTTTTTCTTTCCTTCAATGTGCG 60.086 41.667 0.00 0.00 0.00 5.34
2211 9050 4.318050 GCGTTTTTCTTTCCTTCAATGTGC 60.318 41.667 0.00 0.00 0.00 4.57
2212 9051 5.043248 AGCGTTTTTCTTTCCTTCAATGTG 58.957 37.500 0.00 0.00 0.00 3.21
2213 9052 5.262588 AGCGTTTTTCTTTCCTTCAATGT 57.737 34.783 0.00 0.00 0.00 2.71
2214 9053 7.435192 AGTTAAGCGTTTTTCTTTCCTTCAATG 59.565 33.333 0.00 0.00 0.00 2.82
2215 9054 7.489160 AGTTAAGCGTTTTTCTTTCCTTCAAT 58.511 30.769 0.00 0.00 0.00 2.57
2216 9055 6.859017 AGTTAAGCGTTTTTCTTTCCTTCAA 58.141 32.000 0.00 0.00 0.00 2.69
2217 9056 6.445357 AGTTAAGCGTTTTTCTTTCCTTCA 57.555 33.333 0.00 0.00 0.00 3.02
2228 9067 8.880878 ATCCAAACAATTTAGTTAAGCGTTTT 57.119 26.923 0.00 0.00 0.00 2.43
2231 9070 8.569641 TGTAATCCAAACAATTTAGTTAAGCGT 58.430 29.630 0.00 0.00 0.00 5.07
2232 9071 8.958175 TGTAATCCAAACAATTTAGTTAAGCG 57.042 30.769 0.00 0.00 0.00 4.68
2250 9089 9.503427 CTTTGTCGGATAAAAGATTTGTAATCC 57.497 33.333 9.36 0.00 35.79 3.01
2256 9095 9.151471 TCTACTCTTTGTCGGATAAAAGATTTG 57.849 33.333 15.10 11.97 40.60 2.32
2266 9105 7.819900 GCCAATAATATCTACTCTTTGTCGGAT 59.180 37.037 0.00 0.00 0.00 4.18
2267 9106 7.015292 AGCCAATAATATCTACTCTTTGTCGGA 59.985 37.037 0.00 0.00 0.00 4.55
2268 9107 7.155328 AGCCAATAATATCTACTCTTTGTCGG 58.845 38.462 0.00 0.00 0.00 4.79
2269 9108 7.867909 TGAGCCAATAATATCTACTCTTTGTCG 59.132 37.037 0.00 0.00 0.00 4.35
2270 9109 9.547753 TTGAGCCAATAATATCTACTCTTTGTC 57.452 33.333 0.00 0.00 0.00 3.18
2271 9110 9.905713 TTTGAGCCAATAATATCTACTCTTTGT 57.094 29.630 0.00 0.00 0.00 2.83
2286 9125 9.859427 CTCTTGATGTTTTATTTTGAGCCAATA 57.141 29.630 0.00 0.00 0.00 1.90
2287 9126 8.587608 TCTCTTGATGTTTTATTTTGAGCCAAT 58.412 29.630 0.00 0.00 0.00 3.16
2288 9127 7.950512 TCTCTTGATGTTTTATTTTGAGCCAA 58.049 30.769 0.00 0.00 0.00 4.52
2289 9128 7.523293 TCTCTTGATGTTTTATTTTGAGCCA 57.477 32.000 0.00 0.00 0.00 4.75
2290 9129 8.992835 ATTCTCTTGATGTTTTATTTTGAGCC 57.007 30.769 0.00 0.00 0.00 4.70
2302 9141 9.903682 CATCTTGTTTTGTATTCTCTTGATGTT 57.096 29.630 0.00 0.00 0.00 2.71
2303 9142 9.288576 TCATCTTGTTTTGTATTCTCTTGATGT 57.711 29.630 0.00 0.00 0.00 3.06
2304 9143 9.770503 CTCATCTTGTTTTGTATTCTCTTGATG 57.229 33.333 0.00 0.00 0.00 3.07
2305 9144 8.457261 GCTCATCTTGTTTTGTATTCTCTTGAT 58.543 33.333 0.00 0.00 0.00 2.57
2306 9145 7.445096 TGCTCATCTTGTTTTGTATTCTCTTGA 59.555 33.333 0.00 0.00 0.00 3.02
2307 9146 7.536622 GTGCTCATCTTGTTTTGTATTCTCTTG 59.463 37.037 0.00 0.00 0.00 3.02
2308 9147 7.229306 TGTGCTCATCTTGTTTTGTATTCTCTT 59.771 33.333 0.00 0.00 0.00 2.85
2309 9148 6.712095 TGTGCTCATCTTGTTTTGTATTCTCT 59.288 34.615 0.00 0.00 0.00 3.10
2310 9149 6.798959 GTGTGCTCATCTTGTTTTGTATTCTC 59.201 38.462 0.00 0.00 0.00 2.87
2311 9150 6.262944 TGTGTGCTCATCTTGTTTTGTATTCT 59.737 34.615 0.00 0.00 0.00 2.40
2312 9151 6.360681 GTGTGTGCTCATCTTGTTTTGTATTC 59.639 38.462 0.00 0.00 0.00 1.75
2313 9152 6.039717 AGTGTGTGCTCATCTTGTTTTGTATT 59.960 34.615 0.00 0.00 0.00 1.89
2314 9153 5.532406 AGTGTGTGCTCATCTTGTTTTGTAT 59.468 36.000 0.00 0.00 0.00 2.29
2315 9154 4.881273 AGTGTGTGCTCATCTTGTTTTGTA 59.119 37.500 0.00 0.00 0.00 2.41
2316 9155 3.696051 AGTGTGTGCTCATCTTGTTTTGT 59.304 39.130 0.00 0.00 0.00 2.83
2317 9156 4.297299 AGTGTGTGCTCATCTTGTTTTG 57.703 40.909 0.00 0.00 0.00 2.44
2318 9157 4.440525 CCAAGTGTGTGCTCATCTTGTTTT 60.441 41.667 22.49 1.77 37.04 2.43
2319 9158 3.067180 CCAAGTGTGTGCTCATCTTGTTT 59.933 43.478 22.49 2.52 37.04 2.83
2320 9159 2.620115 CCAAGTGTGTGCTCATCTTGTT 59.380 45.455 22.49 2.74 37.04 2.83
2321 9160 2.224606 CCAAGTGTGTGCTCATCTTGT 58.775 47.619 22.49 1.60 37.04 3.16
2322 9161 1.068748 GCCAAGTGTGTGCTCATCTTG 60.069 52.381 19.91 19.91 37.70 3.02
2323 9162 1.242076 GCCAAGTGTGTGCTCATCTT 58.758 50.000 0.00 0.00 0.00 2.40
2324 9163 0.607489 GGCCAAGTGTGTGCTCATCT 60.607 55.000 0.00 0.00 0.00 2.90
2325 9164 0.607489 AGGCCAAGTGTGTGCTCATC 60.607 55.000 5.01 0.00 0.00 2.92
2326 9165 0.607489 GAGGCCAAGTGTGTGCTCAT 60.607 55.000 5.01 0.00 0.00 2.90
2327 9166 1.227943 GAGGCCAAGTGTGTGCTCA 60.228 57.895 5.01 0.00 0.00 4.26
2328 9167 1.072159 AGAGGCCAAGTGTGTGCTC 59.928 57.895 5.01 0.00 0.00 4.26
2329 9168 1.228063 CAGAGGCCAAGTGTGTGCT 60.228 57.895 5.01 0.00 0.00 4.40
2330 9169 2.912624 GCAGAGGCCAAGTGTGTGC 61.913 63.158 5.01 0.00 0.00 4.57
2331 9170 0.892358 ATGCAGAGGCCAAGTGTGTG 60.892 55.000 5.01 0.00 40.13 3.82
2332 9171 0.692476 TATGCAGAGGCCAAGTGTGT 59.308 50.000 5.01 0.00 40.13 3.72
2333 9172 1.376543 CTATGCAGAGGCCAAGTGTG 58.623 55.000 5.01 0.00 40.13 3.82
2334 9173 0.393537 GCTATGCAGAGGCCAAGTGT 60.394 55.000 10.92 0.00 40.13 3.55
2335 9174 0.107312 AGCTATGCAGAGGCCAAGTG 60.107 55.000 10.92 0.00 40.13 3.16
2336 9175 1.415659 CTAGCTATGCAGAGGCCAAGT 59.584 52.381 10.92 0.00 40.13 3.16
2337 9176 1.690893 TCTAGCTATGCAGAGGCCAAG 59.309 52.381 10.92 6.28 40.13 3.61
2338 9177 1.793414 TCTAGCTATGCAGAGGCCAA 58.207 50.000 10.92 0.00 40.13 4.52
2339 9178 1.793414 TTCTAGCTATGCAGAGGCCA 58.207 50.000 10.92 0.00 40.13 5.36
2340 9179 2.697654 CATTCTAGCTATGCAGAGGCC 58.302 52.381 10.92 0.00 40.13 5.19
2341 9180 2.075338 GCATTCTAGCTATGCAGAGGC 58.925 52.381 18.94 5.36 45.93 4.70
2347 9186 3.249559 GGTTGTCTGCATTCTAGCTATGC 59.750 47.826 17.70 17.70 46.63 3.14
2348 9187 4.445453 TGGTTGTCTGCATTCTAGCTATG 58.555 43.478 0.00 0.00 34.99 2.23
2349 9188 4.760530 TGGTTGTCTGCATTCTAGCTAT 57.239 40.909 0.00 0.00 34.99 2.97
2350 9189 4.253685 GTTGGTTGTCTGCATTCTAGCTA 58.746 43.478 0.00 0.00 34.99 3.32
2351 9190 3.077359 GTTGGTTGTCTGCATTCTAGCT 58.923 45.455 0.00 0.00 34.99 3.32
2352 9191 2.813754 TGTTGGTTGTCTGCATTCTAGC 59.186 45.455 0.00 0.00 0.00 3.42
2353 9192 3.189287 GGTGTTGGTTGTCTGCATTCTAG 59.811 47.826 0.00 0.00 0.00 2.43
2354 9193 3.146066 GGTGTTGGTTGTCTGCATTCTA 58.854 45.455 0.00 0.00 0.00 2.10
2355 9194 1.956477 GGTGTTGGTTGTCTGCATTCT 59.044 47.619 0.00 0.00 0.00 2.40
2356 9195 1.680735 TGGTGTTGGTTGTCTGCATTC 59.319 47.619 0.00 0.00 0.00 2.67
2357 9196 1.774110 TGGTGTTGGTTGTCTGCATT 58.226 45.000 0.00 0.00 0.00 3.56
2358 9197 1.408702 GTTGGTGTTGGTTGTCTGCAT 59.591 47.619 0.00 0.00 0.00 3.96
2359 9198 0.814457 GTTGGTGTTGGTTGTCTGCA 59.186 50.000 0.00 0.00 0.00 4.41
2360 9199 0.814457 TGTTGGTGTTGGTTGTCTGC 59.186 50.000 0.00 0.00 0.00 4.26
2361 9200 1.815613 TGTGTTGGTGTTGGTTGTCTG 59.184 47.619 0.00 0.00 0.00 3.51
2362 9201 1.816224 GTGTGTTGGTGTTGGTTGTCT 59.184 47.619 0.00 0.00 0.00 3.41
2363 9202 1.542030 TGTGTGTTGGTGTTGGTTGTC 59.458 47.619 0.00 0.00 0.00 3.18
2364 9203 1.271102 GTGTGTGTTGGTGTTGGTTGT 59.729 47.619 0.00 0.00 0.00 3.32
2365 9204 1.730772 CGTGTGTGTTGGTGTTGGTTG 60.731 52.381 0.00 0.00 0.00 3.77
2366 9205 0.523966 CGTGTGTGTTGGTGTTGGTT 59.476 50.000 0.00 0.00 0.00 3.67
2367 9206 1.928706 GCGTGTGTGTTGGTGTTGGT 61.929 55.000 0.00 0.00 0.00 3.67
2368 9207 1.226547 GCGTGTGTGTTGGTGTTGG 60.227 57.895 0.00 0.00 0.00 3.77
2369 9208 0.109551 TTGCGTGTGTGTTGGTGTTG 60.110 50.000 0.00 0.00 0.00 3.33
2370 9209 0.598562 TTTGCGTGTGTGTTGGTGTT 59.401 45.000 0.00 0.00 0.00 3.32
2371 9210 0.598562 TTTTGCGTGTGTGTTGGTGT 59.401 45.000 0.00 0.00 0.00 4.16
2372 9211 1.388431 GTTTTTGCGTGTGTGTTGGTG 59.612 47.619 0.00 0.00 0.00 4.17
2373 9212 1.000163 TGTTTTTGCGTGTGTGTTGGT 60.000 42.857 0.00 0.00 0.00 3.67
2374 9213 1.702886 TGTTTTTGCGTGTGTGTTGG 58.297 45.000 0.00 0.00 0.00 3.77
2375 9214 2.534544 GCATGTTTTTGCGTGTGTGTTG 60.535 45.455 0.00 0.00 32.06 3.33
2376 9215 1.658095 GCATGTTTTTGCGTGTGTGTT 59.342 42.857 0.00 0.00 32.06 3.32
2377 9216 1.276415 GCATGTTTTTGCGTGTGTGT 58.724 45.000 0.00 0.00 32.06 3.72
2378 9217 0.576328 GGCATGTTTTTGCGTGTGTG 59.424 50.000 0.00 0.00 43.71 3.82
2379 9218 0.174389 TGGCATGTTTTTGCGTGTGT 59.826 45.000 0.00 0.00 43.71 3.72
2380 9219 1.005137 GTTGGCATGTTTTTGCGTGTG 60.005 47.619 0.00 0.00 43.71 3.82
2381 9220 1.285578 GTTGGCATGTTTTTGCGTGT 58.714 45.000 0.00 0.00 43.71 4.49
2382 9221 1.284657 TGTTGGCATGTTTTTGCGTG 58.715 45.000 0.00 0.00 43.71 5.34
2383 9222 1.663135 GTTGTTGGCATGTTTTTGCGT 59.337 42.857 0.00 0.00 43.71 5.24
2384 9223 1.932511 AGTTGTTGGCATGTTTTTGCG 59.067 42.857 0.00 0.00 43.71 4.85
2385 9224 3.494251 CCTAGTTGTTGGCATGTTTTTGC 59.506 43.478 0.00 0.00 42.01 3.68
2386 9225 4.942852 TCCTAGTTGTTGGCATGTTTTTG 58.057 39.130 0.00 0.00 0.00 2.44
2387 9226 5.606348 TTCCTAGTTGTTGGCATGTTTTT 57.394 34.783 0.00 0.00 0.00 1.94
2388 9227 5.128663 ACTTTCCTAGTTGTTGGCATGTTTT 59.871 36.000 0.00 0.00 31.29 2.43
2389 9228 4.649218 ACTTTCCTAGTTGTTGGCATGTTT 59.351 37.500 0.00 0.00 31.29 2.83
2390 9229 4.215109 ACTTTCCTAGTTGTTGGCATGTT 58.785 39.130 0.00 0.00 31.29 2.71
2391 9230 3.832527 ACTTTCCTAGTTGTTGGCATGT 58.167 40.909 0.00 0.00 31.29 3.21
2392 9231 4.853924 AACTTTCCTAGTTGTTGGCATG 57.146 40.909 0.00 0.00 45.33 4.06
2393 9232 9.914834 TTATATAACTTTCCTAGTTGTTGGCAT 57.085 29.630 0.00 0.00 46.46 4.40
2394 9233 9.391006 CTTATATAACTTTCCTAGTTGTTGGCA 57.609 33.333 0.00 0.00 46.46 4.92
2395 9234 9.609346 TCTTATATAACTTTCCTAGTTGTTGGC 57.391 33.333 0.00 0.00 46.46 4.52
2423 9262 8.857098 TCCTCGTCTACATATAGCATAGTTTTT 58.143 33.333 0.00 0.00 0.00 1.94
2424 9263 8.405418 TCCTCGTCTACATATAGCATAGTTTT 57.595 34.615 0.00 0.00 0.00 2.43
2425 9264 7.997773 TCCTCGTCTACATATAGCATAGTTT 57.002 36.000 0.00 0.00 0.00 2.66
2426 9265 7.997773 TTCCTCGTCTACATATAGCATAGTT 57.002 36.000 0.00 0.00 0.00 2.24
2427 9266 7.997773 TTTCCTCGTCTACATATAGCATAGT 57.002 36.000 0.00 0.00 0.00 2.12
2450 9289 5.303259 TGCTTTGGGGCTATTTTCTTTTT 57.697 34.783 0.00 0.00 0.00 1.94
2451 9290 4.972751 TGCTTTGGGGCTATTTTCTTTT 57.027 36.364 0.00 0.00 0.00 2.27
2452 9291 4.972751 TTGCTTTGGGGCTATTTTCTTT 57.027 36.364 0.00 0.00 0.00 2.52
2453 9292 4.531732 TGATTGCTTTGGGGCTATTTTCTT 59.468 37.500 0.00 0.00 0.00 2.52
2454 9293 4.081476 GTGATTGCTTTGGGGCTATTTTCT 60.081 41.667 0.00 0.00 0.00 2.52
2455 9294 4.183865 GTGATTGCTTTGGGGCTATTTTC 58.816 43.478 0.00 0.00 0.00 2.29
2456 9295 3.582208 TGTGATTGCTTTGGGGCTATTTT 59.418 39.130 0.00 0.00 0.00 1.82
2457 9296 3.172339 TGTGATTGCTTTGGGGCTATTT 58.828 40.909 0.00 0.00 0.00 1.40
2458 9297 2.818921 TGTGATTGCTTTGGGGCTATT 58.181 42.857 0.00 0.00 0.00 1.73
2459 9298 2.530460 TGTGATTGCTTTGGGGCTAT 57.470 45.000 0.00 0.00 0.00 2.97
2460 9299 2.378038 GATGTGATTGCTTTGGGGCTA 58.622 47.619 0.00 0.00 0.00 3.93
2461 9300 1.188863 GATGTGATTGCTTTGGGGCT 58.811 50.000 0.00 0.00 0.00 5.19
2462 9301 0.176449 GGATGTGATTGCTTTGGGGC 59.824 55.000 0.00 0.00 0.00 5.80
2463 9302 1.559368 TGGATGTGATTGCTTTGGGG 58.441 50.000 0.00 0.00 0.00 4.96
2464 9303 3.028850 AGATGGATGTGATTGCTTTGGG 58.971 45.455 0.00 0.00 0.00 4.12
2465 9304 4.730949 AAGATGGATGTGATTGCTTTGG 57.269 40.909 0.00 0.00 0.00 3.28
2466 9305 6.916387 GTGATAAGATGGATGTGATTGCTTTG 59.084 38.462 0.00 0.00 0.00 2.77
2467 9306 6.604396 TGTGATAAGATGGATGTGATTGCTTT 59.396 34.615 0.00 0.00 0.00 3.51
2468 9307 6.039047 GTGTGATAAGATGGATGTGATTGCTT 59.961 38.462 0.00 0.00 0.00 3.91
2469 9308 5.530171 GTGTGATAAGATGGATGTGATTGCT 59.470 40.000 0.00 0.00 0.00 3.91
2470 9309 5.278169 GGTGTGATAAGATGGATGTGATTGC 60.278 44.000 0.00 0.00 0.00 3.56
2471 9310 5.824097 TGGTGTGATAAGATGGATGTGATTG 59.176 40.000 0.00 0.00 0.00 2.67
2472 9311 6.005066 TGGTGTGATAAGATGGATGTGATT 57.995 37.500 0.00 0.00 0.00 2.57
2473 9312 5.635278 TGGTGTGATAAGATGGATGTGAT 57.365 39.130 0.00 0.00 0.00 3.06
2474 9313 5.434182 TTGGTGTGATAAGATGGATGTGA 57.566 39.130 0.00 0.00 0.00 3.58
2475 9314 6.460537 CCATTTGGTGTGATAAGATGGATGTG 60.461 42.308 0.00 0.00 35.68 3.21
2476 9315 5.595542 CCATTTGGTGTGATAAGATGGATGT 59.404 40.000 0.00 0.00 35.68 3.06
2479 9318 5.191522 TCTCCATTTGGTGTGATAAGATGGA 59.808 40.000 0.00 0.00 39.24 3.41
2484 9323 6.600822 ACAATCTCTCCATTTGGTGTGATAAG 59.399 38.462 13.56 12.08 39.52 1.73
2489 9328 4.520111 TGAACAATCTCTCCATTTGGTGTG 59.480 41.667 0.00 0.00 36.34 3.82
2508 9351 4.162812 TCGTGAAAGTTTTGCTGTTGAAC 58.837 39.130 0.00 0.00 0.00 3.18
2517 9360 5.028375 GTCACTCCTTTCGTGAAAGTTTTG 58.972 41.667 18.25 12.34 44.66 2.44
2520 9363 2.864343 CGTCACTCCTTTCGTGAAAGTT 59.136 45.455 18.25 2.98 44.66 2.66
2521 9364 2.470821 CGTCACTCCTTTCGTGAAAGT 58.529 47.619 18.25 1.33 44.66 2.66
2523 9366 1.202486 AGCGTCACTCCTTTCGTGAAA 60.202 47.619 0.00 0.00 42.45 2.69
2528 9371 1.063806 CTTGAGCGTCACTCCTTTCG 58.936 55.000 0.00 0.00 45.61 3.46
2555 9398 2.582498 GTCGTTGGATCCGGCGAG 60.582 66.667 24.59 8.12 33.90 5.03
2558 9401 2.046700 TTGGTCGTTGGATCCGGC 60.047 61.111 7.39 0.97 0.00 6.13
2565 9408 0.609131 ATTCTGGCCTTGGTCGTTGG 60.609 55.000 3.32 0.00 0.00 3.77
2577 9420 7.849804 TCAGAGTGAAAACTTATATTCTGGC 57.150 36.000 0.00 0.00 33.45 4.85
2603 9446 9.988815 ATTACTCGAATATGCTCAGACTATTTT 57.011 29.630 0.00 0.00 0.00 1.82
2605 9448 8.797438 TCATTACTCGAATATGCTCAGACTATT 58.203 33.333 0.00 0.00 0.00 1.73
2606 9449 8.341892 TCATTACTCGAATATGCTCAGACTAT 57.658 34.615 0.00 0.00 0.00 2.12
2609 9452 7.596621 TGAATCATTACTCGAATATGCTCAGAC 59.403 37.037 0.00 0.00 0.00 3.51
2621 9464 6.309494 CGTTACCTTGTTGAATCATTACTCGA 59.691 38.462 0.00 0.00 0.00 4.04
2623 9466 7.412672 GGTCGTTACCTTGTTGAATCATTACTC 60.413 40.741 0.00 0.00 43.08 2.59
2626 9469 6.730960 GGTCGTTACCTTGTTGAATCATTA 57.269 37.500 0.00 0.00 43.08 1.90
2654 9498 6.405397 GGTTATACCTGGCAATGACGATTTTT 60.405 38.462 0.00 0.00 34.73 1.94
2662 9508 4.523083 GAGTTGGTTATACCTGGCAATGA 58.477 43.478 0.00 0.00 39.58 2.57
2693 9539 1.687123 GCTCCGAGGTGAAAGCCTATA 59.313 52.381 0.00 0.00 39.34 1.31
2694 9540 0.466124 GCTCCGAGGTGAAAGCCTAT 59.534 55.000 0.00 0.00 39.34 2.57
2696 9542 1.893919 GAGCTCCGAGGTGAAAGCCT 61.894 60.000 4.45 0.00 42.53 4.58
2697 9543 1.448717 GAGCTCCGAGGTGAAAGCC 60.449 63.158 4.45 0.00 35.32 4.35
2718 9564 1.002366 GCTACTCATGCACCTCGTTG 58.998 55.000 0.00 0.00 0.00 4.10
2719 9565 0.608130 TGCTACTCATGCACCTCGTT 59.392 50.000 0.00 0.00 35.31 3.85
2727 9573 1.079127 ACGGTGGTGCTACTCATGC 60.079 57.895 0.00 0.00 0.00 4.06
2729 9575 0.246635 GTGACGGTGGTGCTACTCAT 59.753 55.000 0.00 0.00 0.00 2.90
2765 9611 1.480789 GGTTGTGGAAAAGTGGTGGT 58.519 50.000 0.00 0.00 0.00 4.16
2779 9625 1.618343 GCATTTAGCTGTTGGGGTTGT 59.382 47.619 0.00 0.00 41.15 3.32
2783 9629 1.392589 ATCGCATTTAGCTGTTGGGG 58.607 50.000 0.00 0.00 42.61 4.96
2785 9631 4.273235 TCACATATCGCATTTAGCTGTTGG 59.727 41.667 0.00 0.00 42.61 3.77
2788 9634 3.809832 GGTCACATATCGCATTTAGCTGT 59.190 43.478 0.00 0.00 42.61 4.40
2822 9668 0.537143 TGACACACAGGGATGGTTGC 60.537 55.000 0.00 0.00 0.00 4.17
2829 9675 1.472552 CGACAACTTGACACACAGGGA 60.473 52.381 0.00 0.00 0.00 4.20
2834 9680 2.268298 ACAGACGACAACTTGACACAC 58.732 47.619 0.00 0.00 0.00 3.82
2836 9682 3.703420 ACTACAGACGACAACTTGACAC 58.297 45.455 0.00 0.00 0.00 3.67
2844 9690 3.990092 AGATGCAAACTACAGACGACAA 58.010 40.909 0.00 0.00 0.00 3.18
2845 9691 3.660501 AGATGCAAACTACAGACGACA 57.339 42.857 0.00 0.00 0.00 4.35
2846 9692 4.326548 GGTAAGATGCAAACTACAGACGAC 59.673 45.833 0.00 0.00 0.00 4.34
2849 9695 3.062234 GCGGTAAGATGCAAACTACAGAC 59.938 47.826 0.00 0.00 0.00 3.51
2861 9707 1.659098 GTTGACTTCGGCGGTAAGATG 59.341 52.381 14.33 0.00 0.00 2.90
2866 9712 0.108520 GATGGTTGACTTCGGCGGTA 60.109 55.000 7.21 0.00 0.00 4.02
2875 9721 1.759445 CTCCAGATCCGATGGTTGACT 59.241 52.381 0.00 0.00 39.01 3.41
2881 9727 2.523245 TCATCTCTCCAGATCCGATGG 58.477 52.381 0.00 0.00 37.25 3.51
2884 9730 3.304911 AGTTCATCTCTCCAGATCCGA 57.695 47.619 0.00 0.00 37.25 4.55
2888 9734 8.830915 TCTTTAAGTAGTTCATCTCTCCAGAT 57.169 34.615 0.00 0.00 40.32 2.90
2899 9745 8.088981 GTCACCAAGAGATCTTTAAGTAGTTCA 58.911 37.037 0.00 0.00 33.11 3.18
2905 9751 5.998363 GGTTGTCACCAAGAGATCTTTAAGT 59.002 40.000 0.00 0.00 43.61 2.24
2906 9752 5.120830 CGGTTGTCACCAAGAGATCTTTAAG 59.879 44.000 0.00 0.00 44.53 1.85
2907 9753 4.994852 CGGTTGTCACCAAGAGATCTTTAA 59.005 41.667 0.00 0.00 44.53 1.52
2908 9754 4.039973 ACGGTTGTCACCAAGAGATCTTTA 59.960 41.667 0.00 0.00 44.53 1.85
2909 9755 3.181454 ACGGTTGTCACCAAGAGATCTTT 60.181 43.478 0.00 0.00 44.53 2.52
2925 9772 2.604174 GGCTCCACGACAACGGTTG 61.604 63.158 18.81 18.81 44.46 3.77
2947 9794 0.108585 ATTGTGCTGGAACGACCACT 59.891 50.000 0.00 0.00 44.64 4.00
2961 9808 1.443194 GCGGTTGCTGCAGATTGTG 60.443 57.895 20.43 4.52 38.39 3.33
2962 9809 2.629656 GGCGGTTGCTGCAGATTGT 61.630 57.895 20.43 0.00 42.25 2.71
2965 9812 3.058160 GTGGCGGTTGCTGCAGAT 61.058 61.111 20.43 0.00 42.25 2.90
2969 9816 2.671619 TTAGGTGGCGGTTGCTGC 60.672 61.111 0.00 0.00 42.25 5.25
2972 9819 3.428282 CGGTTAGGTGGCGGTTGC 61.428 66.667 0.00 0.00 41.71 4.17
2974 9821 0.903942 TAATCGGTTAGGTGGCGGTT 59.096 50.000 0.00 0.00 0.00 4.44
2978 9825 1.202615 GGGTCTAATCGGTTAGGTGGC 60.203 57.143 15.31 4.12 38.27 5.01
2985 9832 1.140375 GACGCGGGTCTAATCGGTT 59.860 57.895 23.96 0.00 40.15 4.44
2986 9833 2.048023 TGACGCGGGTCTAATCGGT 61.048 57.895 29.62 0.00 43.79 4.69
2992 9839 3.376078 GGTGGTGACGCGGGTCTA 61.376 66.667 29.62 15.61 43.79 2.59
2996 9843 4.920112 TGTTGGTGGTGACGCGGG 62.920 66.667 12.47 0.00 43.50 6.13
3001 9848 2.551912 CGGGCTTGTTGGTGGTGAC 61.552 63.158 0.00 0.00 0.00 3.67
3010 9857 0.618458 TAAGATCTGGCGGGCTTGTT 59.382 50.000 0.00 0.00 0.00 2.83
3011 9858 0.839946 ATAAGATCTGGCGGGCTTGT 59.160 50.000 0.00 3.75 0.00 3.16
3047 9894 9.126151 TCGATCTAATGAAAGAGACTAGTCAAT 57.874 33.333 24.44 9.69 0.00 2.57
3048 9895 8.507524 TCGATCTAATGAAAGAGACTAGTCAA 57.492 34.615 24.44 3.60 0.00 3.18
3049 9896 8.684386 ATCGATCTAATGAAAGAGACTAGTCA 57.316 34.615 24.44 3.85 0.00 3.41
3050 9897 8.999431 AGATCGATCTAATGAAAGAGACTAGTC 58.001 37.037 26.27 15.41 34.85 2.59
3051 9898 8.918202 AGATCGATCTAATGAAAGAGACTAGT 57.082 34.615 26.27 0.00 34.85 2.57
3054 9901 9.311916 CAAAAGATCGATCTAATGAAAGAGACT 57.688 33.333 27.52 5.00 35.76 3.24
3055 9902 8.547069 CCAAAAGATCGATCTAATGAAAGAGAC 58.453 37.037 27.52 0.00 35.76 3.36
3056 9903 8.260818 ACCAAAAGATCGATCTAATGAAAGAGA 58.739 33.333 27.52 0.00 35.76 3.10
3057 9904 8.430801 ACCAAAAGATCGATCTAATGAAAGAG 57.569 34.615 27.52 16.49 35.76 2.85
3058 9905 8.668353 CAACCAAAAGATCGATCTAATGAAAGA 58.332 33.333 27.52 0.00 35.76 2.52
3059 9906 7.430502 GCAACCAAAAGATCGATCTAATGAAAG 59.569 37.037 27.52 19.00 35.76 2.62
3060 9907 7.094420 TGCAACCAAAAGATCGATCTAATGAAA 60.094 33.333 27.52 10.74 35.76 2.69
3061 9908 6.374053 TGCAACCAAAAGATCGATCTAATGAA 59.626 34.615 27.52 12.18 35.76 2.57
3062 9909 5.879777 TGCAACCAAAAGATCGATCTAATGA 59.120 36.000 27.52 10.53 35.76 2.57
3063 9910 6.122850 TGCAACCAAAAGATCGATCTAATG 57.877 37.500 27.52 25.18 35.76 1.90
3064 9911 6.949352 ATGCAACCAAAAGATCGATCTAAT 57.051 33.333 27.52 16.82 35.76 1.73
3065 9912 6.404623 CCAATGCAACCAAAAGATCGATCTAA 60.405 38.462 27.52 6.31 35.76 2.10
3066 9913 5.066375 CCAATGCAACCAAAAGATCGATCTA 59.934 40.000 27.52 9.64 35.76 1.98
3067 9914 4.142315 CCAATGCAACCAAAAGATCGATCT 60.142 41.667 22.32 22.32 39.22 2.75
3068 9915 4.107622 CCAATGCAACCAAAAGATCGATC 58.892 43.478 17.91 17.91 0.00 3.69
3069 9916 3.676873 GCCAATGCAACCAAAAGATCGAT 60.677 43.478 0.00 0.00 37.47 3.59
3070 9917 2.352617 GCCAATGCAACCAAAAGATCGA 60.353 45.455 0.00 0.00 37.47 3.59
3071 9918 1.994779 GCCAATGCAACCAAAAGATCG 59.005 47.619 0.00 0.00 37.47 3.69
3072 9919 3.323751 AGCCAATGCAACCAAAAGATC 57.676 42.857 0.00 0.00 41.13 2.75
3073 9920 4.088634 TCTAGCCAATGCAACCAAAAGAT 58.911 39.130 0.00 0.00 41.13 2.40
3074 9921 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
3075 9922 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
3076 9923 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
3077 9924 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
3078 9925 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
3079 9926 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
3080 9927 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
3081 9928 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
3082 9929 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
3083 9930 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
3084 9931 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
3085 9932 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
3086 9933 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
3087 9934 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
3088 9935 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
3089 9936 2.898729 TAGAAGTGCATGCTCTAGCC 57.101 50.000 21.70 13.81 41.18 3.93
3090 9937 4.869297 CCATATAGAAGTGCATGCTCTAGC 59.131 45.833 21.70 16.29 42.50 3.42
3091 9938 6.035368 ACCATATAGAAGTGCATGCTCTAG 57.965 41.667 21.70 9.54 0.00 2.43
3092 9939 7.415653 CGATACCATATAGAAGTGCATGCTCTA 60.416 40.741 21.70 18.17 0.00 2.43
3093 9940 4.970860 ACCATATAGAAGTGCATGCTCT 57.029 40.909 20.33 18.23 0.00 4.09
3094 9941 5.518128 CGATACCATATAGAAGTGCATGCTC 59.482 44.000 20.33 15.94 0.00 4.26
3095 9942 5.185828 TCGATACCATATAGAAGTGCATGCT 59.814 40.000 20.33 0.00 0.00 3.79
3096 9943 5.410924 TCGATACCATATAGAAGTGCATGC 58.589 41.667 11.82 11.82 0.00 4.06
3097 9944 7.148573 GGTTTCGATACCATATAGAAGTGCATG 60.149 40.741 18.84 0.00 38.12 4.06
3098 9945 6.874134 GGTTTCGATACCATATAGAAGTGCAT 59.126 38.462 18.84 0.00 38.12 3.96
3099 9946 6.183360 TGGTTTCGATACCATATAGAAGTGCA 60.183 38.462 21.97 0.00 43.14 4.57
3100 9947 6.220930 TGGTTTCGATACCATATAGAAGTGC 58.779 40.000 21.97 0.00 43.14 4.40
3132 9979 0.250295 CAGCCGGGTCTTGAACTCAA 60.250 55.000 1.27 0.00 0.00 3.02
3133 9980 1.118965 TCAGCCGGGTCTTGAACTCA 61.119 55.000 1.27 0.00 0.00 3.41
3134 9981 0.670854 GTCAGCCGGGTCTTGAACTC 60.671 60.000 1.27 0.00 0.00 3.01
3135 9982 1.371558 GTCAGCCGGGTCTTGAACT 59.628 57.895 1.27 0.00 0.00 3.01
3136 9983 2.027625 CGTCAGCCGGGTCTTGAAC 61.028 63.158 1.27 0.00 0.00 3.18
3137 9984 2.342279 CGTCAGCCGGGTCTTGAA 59.658 61.111 1.27 0.00 0.00 2.69
3138 9985 4.373116 GCGTCAGCCGGGTCTTGA 62.373 66.667 1.27 0.00 37.42 3.02
3139 9986 4.680237 TGCGTCAGCCGGGTCTTG 62.680 66.667 1.27 0.00 44.33 3.02
3140 9987 2.748058 AATTGCGTCAGCCGGGTCTT 62.748 55.000 1.27 0.00 44.33 3.01
3141 9988 1.895020 TAATTGCGTCAGCCGGGTCT 61.895 55.000 1.27 0.00 44.33 3.85
3142 9989 1.022451 TTAATTGCGTCAGCCGGGTC 61.022 55.000 1.27 0.00 44.33 4.46
3143 9990 0.606944 TTTAATTGCGTCAGCCGGGT 60.607 50.000 0.00 0.00 44.33 5.28
3144 9991 0.098728 CTTTAATTGCGTCAGCCGGG 59.901 55.000 2.18 0.00 44.33 5.73
3145 9992 0.802494 ACTTTAATTGCGTCAGCCGG 59.198 50.000 0.00 0.00 44.33 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.