Multiple sequence alignment - TraesCS5A01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G294300 chr5A 100.000 2540 0 0 1 2540 503438592 503441131 0.000000e+00 4691.0
1 TraesCS5A01G294300 chr5A 86.414 1450 138 22 251 1671 503485138 503486557 0.000000e+00 1531.0
2 TraesCS5A01G294300 chr5A 81.430 1007 140 20 688 1668 503492713 503493698 0.000000e+00 780.0
3 TraesCS5A01G294300 chr5A 76.448 1329 224 57 269 1540 503398195 503399491 2.760000e-179 638.0
4 TraesCS5A01G294300 chr5A 80.331 544 99 4 941 1476 503273854 503274397 3.040000e-109 405.0
5 TraesCS5A01G294300 chr5A 83.742 326 26 15 288 597 503492357 503492671 1.490000e-72 283.0
6 TraesCS5A01G294300 chr5D 89.378 1431 127 12 251 1672 398464073 398465487 0.000000e+00 1777.0
7 TraesCS5A01G294300 chr5D 85.351 669 93 3 987 1654 398435019 398435683 0.000000e+00 688.0
8 TraesCS5A01G294300 chr5D 82.337 736 117 12 919 1647 398245777 398246506 5.970000e-176 627.0
9 TraesCS5A01G294300 chr5D 76.035 1039 168 49 656 1646 398331041 398332046 4.950000e-127 464.0
10 TraesCS5A01G294300 chr5D 78.756 659 78 26 277 915 398245128 398245744 3.960000e-103 385.0
11 TraesCS5A01G294300 chr5D 78.466 678 76 38 252 916 398434319 398434939 1.840000e-101 379.0
12 TraesCS5A01G294300 chr5D 82.682 358 52 9 1967 2317 18409277 18408923 2.450000e-80 309.0
13 TraesCS5A01G294300 chr5D 82.059 340 41 13 266 597 398482406 398482733 3.220000e-69 272.0
14 TraesCS5A01G294300 chr5B 85.857 1202 153 11 478 1672 478404416 478405607 0.000000e+00 1262.0
15 TraesCS5A01G294300 chr5B 82.495 1451 149 49 254 1657 478425175 478426567 0.000000e+00 1175.0
16 TraesCS5A01G294300 chr5B 81.460 1014 121 30 688 1657 478430774 478431764 0.000000e+00 769.0
17 TraesCS5A01G294300 chr5B 91.786 487 32 2 1 479 478403540 478404026 0.000000e+00 671.0
18 TraesCS5A01G294300 chr5B 76.137 1253 208 51 298 1499 478335347 478336559 7.880000e-160 573.0
19 TraesCS5A01G294300 chr5B 94.286 105 6 0 1673 1777 335513886 335513782 7.270000e-36 161.0
20 TraesCS5A01G294300 chr5B 93.333 105 7 0 1673 1777 335491267 335491163 3.380000e-34 156.0
21 TraesCS5A01G294300 chr7D 88.779 303 27 7 1945 2244 59889193 59889491 5.160000e-97 364.0
22 TraesCS5A01G294300 chr7D 85.088 342 34 13 1936 2269 39494988 39495320 1.460000e-87 333.0
23 TraesCS5A01G294300 chr7D 95.215 209 10 0 2330 2538 39495466 39495674 5.240000e-87 331.0
24 TraesCS5A01G294300 chrUn 84.182 373 45 13 1939 2301 441676628 441676260 1.450000e-92 350.0
25 TraesCS5A01G294300 chrUn 83.632 391 39 17 1717 2090 37381201 37380819 6.730000e-91 344.0
26 TraesCS5A01G294300 chr6B 84.182 373 45 13 1936 2298 707780342 707780710 1.450000e-92 350.0
27 TraesCS5A01G294300 chr7A 93.665 221 14 0 2307 2527 56376525 56376305 5.240000e-87 331.0
28 TraesCS5A01G294300 chr7A 95.192 208 10 0 2330 2537 731676751 731676544 1.880000e-86 329.0
29 TraesCS5A01G294300 chr7A 83.565 359 46 10 1964 2317 717403911 717404261 8.760000e-85 324.0
30 TraesCS5A01G294300 chr7A 90.948 232 21 0 2307 2538 736378010 736377779 1.900000e-81 313.0
31 TraesCS5A01G294300 chr7A 93.301 209 13 1 2330 2538 651091432 651091639 8.830000e-80 307.0
32 TraesCS5A01G294300 chr7A 90.164 61 4 2 1711 1771 57323481 57323539 7.530000e-11 78.7
33 TraesCS5A01G294300 chr4A 83.844 359 42 13 1970 2317 735895263 735895616 6.780000e-86 327.0
34 TraesCS5A01G294300 chr4A 93.301 209 14 0 2330 2538 735895678 735895886 2.450000e-80 309.0
35 TraesCS5A01G294300 chr4A 89.831 59 6 0 1719 1777 242873889 242873831 2.710000e-10 76.8
36 TraesCS5A01G294300 chr7B 94.660 206 10 1 2330 2535 666665399 666665603 4.080000e-83 318.0
37 TraesCS5A01G294300 chr7B 81.915 376 58 10 1944 2314 11882029 11882399 2.450000e-80 309.0
38 TraesCS5A01G294300 chr2A 93.780 209 13 0 2319 2527 100923667 100923459 5.270000e-82 315.0
39 TraesCS5A01G294300 chr1D 82.466 365 49 13 1963 2317 63417555 63417196 3.170000e-79 305.0
40 TraesCS5A01G294300 chr1B 93.204 206 14 0 2330 2535 35441263 35441468 1.140000e-78 303.0
41 TraesCS5A01G294300 chr3D 92.982 57 2 2 1879 1934 601006970 601006915 5.820000e-12 82.4
42 TraesCS5A01G294300 chr3D 80.531 113 8 10 1879 1980 601015973 601015864 9.750000e-10 75.0
43 TraesCS5A01G294300 chr3D 93.750 48 2 1 1879 1925 601033397 601033350 1.260000e-08 71.3
44 TraesCS5A01G294300 chr3B 92.982 57 2 2 1879 1934 808299266 808299211 5.820000e-12 82.4
45 TraesCS5A01G294300 chr3B 100.000 42 0 0 1889 1930 808461773 808461732 7.530000e-11 78.7
46 TraesCS5A01G294300 chr3B 92.453 53 3 1 1882 1934 808317445 808317394 9.750000e-10 75.0
47 TraesCS5A01G294300 chr3A 89.474 57 4 2 1879 1934 731537701 731537756 1.260000e-08 71.3
48 TraesCS5A01G294300 chr3A 88.679 53 5 1 1879 1930 731632951 731632899 2.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G294300 chr5A 503438592 503441131 2539 False 4691.0 4691 100.0000 1 2540 1 chr5A.!!$F3 2539
1 TraesCS5A01G294300 chr5A 503485138 503486557 1419 False 1531.0 1531 86.4140 251 1671 1 chr5A.!!$F4 1420
2 TraesCS5A01G294300 chr5A 503398195 503399491 1296 False 638.0 638 76.4480 269 1540 1 chr5A.!!$F2 1271
3 TraesCS5A01G294300 chr5A 503492357 503493698 1341 False 531.5 780 82.5860 288 1668 2 chr5A.!!$F5 1380
4 TraesCS5A01G294300 chr5A 503273854 503274397 543 False 405.0 405 80.3310 941 1476 1 chr5A.!!$F1 535
5 TraesCS5A01G294300 chr5D 398464073 398465487 1414 False 1777.0 1777 89.3780 251 1672 1 chr5D.!!$F2 1421
6 TraesCS5A01G294300 chr5D 398434319 398435683 1364 False 533.5 688 81.9085 252 1654 2 chr5D.!!$F5 1402
7 TraesCS5A01G294300 chr5D 398245128 398246506 1378 False 506.0 627 80.5465 277 1647 2 chr5D.!!$F4 1370
8 TraesCS5A01G294300 chr5D 398331041 398332046 1005 False 464.0 464 76.0350 656 1646 1 chr5D.!!$F1 990
9 TraesCS5A01G294300 chr5B 478425175 478426567 1392 False 1175.0 1175 82.4950 254 1657 1 chr5B.!!$F2 1403
10 TraesCS5A01G294300 chr5B 478403540 478405607 2067 False 966.5 1262 88.8215 1 1672 2 chr5B.!!$F4 1671
11 TraesCS5A01G294300 chr5B 478430774 478431764 990 False 769.0 769 81.4600 688 1657 1 chr5B.!!$F3 969
12 TraesCS5A01G294300 chr5B 478335347 478336559 1212 False 573.0 573 76.1370 298 1499 1 chr5B.!!$F1 1201
13 TraesCS5A01G294300 chr7D 39494988 39495674 686 False 332.0 333 90.1515 1936 2538 2 chr7D.!!$F2 602
14 TraesCS5A01G294300 chr4A 735895263 735895886 623 False 318.0 327 88.5725 1970 2538 2 chr4A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 1047 0.397957 GGACACCAACCCAAAAGGGT 60.398 55.0 0.0 0.0 45.25 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2496 0.108329 CTCACGCAACCCTTATCGGT 60.108 55.0 0.0 0.0 37.93 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.834188 AATCGCCGGATTCAAAAGGT 58.166 45.000 5.05 0.00 38.51 3.50
72 73 0.524816 GCGCATTCCAAGCATCACTG 60.525 55.000 0.30 0.00 0.00 3.66
87 88 2.364632 TCACTGTTCCAACACACAAGG 58.635 47.619 0.00 0.00 34.70 3.61
110 111 3.365265 GGTGCCCGGCAGAACAAG 61.365 66.667 13.92 0.00 40.08 3.16
122 123 4.152402 CGGCAGAACAAGAATATATTCCCG 59.848 45.833 19.67 17.60 37.51 5.14
143 144 3.119637 CGTGGTTAAAATCCGGAAAGCAT 60.120 43.478 18.52 3.34 32.61 3.79
144 145 4.095185 CGTGGTTAAAATCCGGAAAGCATA 59.905 41.667 18.52 2.46 32.61 3.14
148 150 7.012989 GTGGTTAAAATCCGGAAAGCATATACT 59.987 37.037 18.52 0.00 32.61 2.12
153 155 2.367567 TCCGGAAAGCATATACTCCACC 59.632 50.000 0.00 0.00 0.00 4.61
185 187 3.979101 TGCATGAGACTTGATGTGGTA 57.021 42.857 0.00 0.00 0.00 3.25
188 190 4.256920 GCATGAGACTTGATGTGGTAGTT 58.743 43.478 0.00 0.00 0.00 2.24
209 211 2.559231 TGTCACAGTACGCCATGTCTAA 59.441 45.455 0.00 0.00 0.00 2.10
225 227 6.603201 CCATGTCTAAAACTCCATAATGGTGT 59.397 38.462 0.00 0.00 45.22 4.16
524 949 1.600636 CGGTCTGCTTGCTTTGGGA 60.601 57.895 0.00 0.00 0.00 4.37
596 1032 3.266772 AGAGATATTGGCAGTTTGGGACA 59.733 43.478 0.00 0.00 0.00 4.02
611 1047 0.397957 GGACACCAACCCAAAAGGGT 60.398 55.000 0.00 0.00 45.25 4.34
693 1137 5.562298 AAGTTCCTTGCTTAGTTCCACTA 57.438 39.130 0.00 0.00 0.00 2.74
758 1202 7.406104 TCTCTCTGGTATATGCTATTGCTAGA 58.594 38.462 0.00 0.00 40.48 2.43
800 1245 2.096417 CGCGAGGTACCAAAAGTTTGAG 60.096 50.000 15.94 0.00 40.55 3.02
809 1254 3.243068 ACCAAAAGTTTGAGCGTGACATC 60.243 43.478 5.34 0.00 40.55 3.06
850 1307 4.142534 TGTTAATTGCATGCTCAGCTTCTC 60.143 41.667 20.33 2.25 0.00 2.87
867 1327 7.928167 TCAGCTTCTCACTATAAATACACCATG 59.072 37.037 0.00 0.00 0.00 3.66
873 1333 7.507277 TCTCACTATAAATACACCATGAGAGCT 59.493 37.037 0.00 0.00 37.12 4.09
895 1355 2.054453 GGACAAAGCCCATGCCTCC 61.054 63.158 0.00 0.00 38.69 4.30
968 1475 2.945668 CCTTACTTGCTGCCCTTCATAC 59.054 50.000 0.00 0.00 0.00 2.39
970 1477 0.613260 ACTTGCTGCCCTTCATACGA 59.387 50.000 0.00 0.00 0.00 3.43
1038 1547 0.107752 CTGAGCTCCTGAAGAAGGCC 60.108 60.000 12.15 0.00 46.92 5.19
1040 1549 1.893919 GAGCTCCTGAAGAAGGCCGT 61.894 60.000 0.87 0.00 46.92 5.68
1115 1649 2.591753 CAGGATGTCCATGGGCGT 59.408 61.111 11.87 11.87 38.89 5.68
1333 1873 3.245229 ACTGCATCCCCTATTCAACAACA 60.245 43.478 0.00 0.00 0.00 3.33
1340 1880 2.351350 CCCTATTCAACAACAACCACGC 60.351 50.000 0.00 0.00 0.00 5.34
1359 1908 3.244284 ACGCCAACTACCATTACACTGAA 60.244 43.478 0.00 0.00 0.00 3.02
1423 1981 2.975732 TGAGCTGTCAGTCATGGATC 57.024 50.000 0.93 0.00 0.00 3.36
1430 1988 4.503469 GCTGTCAGTCATGGATCTGATCAT 60.503 45.833 18.64 8.07 41.67 2.45
1438 1996 5.003804 TCATGGATCTGATCATGAGCAATG 58.996 41.667 15.55 14.53 43.09 2.82
1453 2011 1.004745 GCAATGGAGAAGTTGAGGGGA 59.995 52.381 0.00 0.00 0.00 4.81
1476 2034 2.355209 GGAGTTCAACATGGAGGAGGAC 60.355 54.545 0.00 0.00 0.00 3.85
1515 2073 5.600898 TGATATGTTCATTAGGAGGTTCCGA 59.399 40.000 0.00 0.00 42.75 4.55
1549 2108 9.009675 TGAATGAGGGATTTTAGGGTCTTATTA 57.990 33.333 0.00 0.00 0.00 0.98
1561 2120 3.304928 GGGTCTTATTAGCACATGCATGC 60.305 47.826 26.53 15.62 46.50 4.06
1657 2225 2.557920 AGGAGTTGAGGCTTGACAAG 57.442 50.000 11.02 11.02 0.00 3.16
1674 2242 7.759489 TTGACAAGCAGTTATCCTTATTTGT 57.241 32.000 0.00 0.00 0.00 2.83
1675 2243 7.759489 TGACAAGCAGTTATCCTTATTTGTT 57.241 32.000 0.00 0.00 0.00 2.83
1676 2244 8.856153 TGACAAGCAGTTATCCTTATTTGTTA 57.144 30.769 0.00 0.00 0.00 2.41
1677 2245 8.946085 TGACAAGCAGTTATCCTTATTTGTTAG 58.054 33.333 0.00 0.00 0.00 2.34
1678 2246 8.281212 ACAAGCAGTTATCCTTATTTGTTAGG 57.719 34.615 0.00 0.00 0.00 2.69
1679 2247 7.888546 ACAAGCAGTTATCCTTATTTGTTAGGT 59.111 33.333 0.00 0.00 33.15 3.08
1680 2248 8.739972 CAAGCAGTTATCCTTATTTGTTAGGTT 58.260 33.333 0.00 0.00 33.15 3.50
1681 2249 9.969001 AAGCAGTTATCCTTATTTGTTAGGTTA 57.031 29.630 0.00 0.00 33.15 2.85
1682 2250 9.969001 AGCAGTTATCCTTATTTGTTAGGTTAA 57.031 29.630 0.00 0.00 33.15 2.01
1690 2258 9.589461 TCCTTATTTGTTAGGTTAATCCAAACA 57.411 29.630 1.16 1.16 39.02 2.83
1696 2264 8.934507 TTGTTAGGTTAATCCAAACAAGTTTG 57.065 30.769 16.62 16.62 46.93 2.93
1711 2279 6.715347 ACAAGTTTGAATTTGGCTAGAAGT 57.285 33.333 0.00 0.00 30.79 3.01
1712 2280 6.507023 ACAAGTTTGAATTTGGCTAGAAGTG 58.493 36.000 0.00 0.00 30.79 3.16
1713 2281 5.126396 AGTTTGAATTTGGCTAGAAGTGC 57.874 39.130 0.00 0.00 0.00 4.40
1714 2282 3.829886 TTGAATTTGGCTAGAAGTGCG 57.170 42.857 0.00 0.00 0.00 5.34
1715 2283 1.468520 TGAATTTGGCTAGAAGTGCGC 59.531 47.619 0.00 0.00 0.00 6.09
1716 2284 1.740025 GAATTTGGCTAGAAGTGCGCT 59.260 47.619 9.73 0.00 0.00 5.92
1717 2285 2.691409 ATTTGGCTAGAAGTGCGCTA 57.309 45.000 9.73 0.00 0.00 4.26
1718 2286 2.010145 TTTGGCTAGAAGTGCGCTAG 57.990 50.000 9.73 2.13 38.65 3.42
1719 2287 0.895530 TTGGCTAGAAGTGCGCTAGT 59.104 50.000 9.73 0.00 38.06 2.57
1720 2288 0.895530 TGGCTAGAAGTGCGCTAGTT 59.104 50.000 9.73 4.14 38.06 2.24
1721 2289 1.281899 GGCTAGAAGTGCGCTAGTTG 58.718 55.000 9.73 0.00 38.06 3.16
1722 2290 1.404315 GGCTAGAAGTGCGCTAGTTGT 60.404 52.381 9.73 5.67 38.06 3.32
1723 2291 1.656095 GCTAGAAGTGCGCTAGTTGTG 59.344 52.381 9.73 0.00 38.06 3.33
1724 2292 2.927014 GCTAGAAGTGCGCTAGTTGTGT 60.927 50.000 9.73 0.00 38.06 3.72
1725 2293 1.784525 AGAAGTGCGCTAGTTGTGTC 58.215 50.000 9.73 0.00 0.00 3.67
1726 2294 0.790814 GAAGTGCGCTAGTTGTGTCC 59.209 55.000 9.73 0.00 0.00 4.02
1727 2295 0.944311 AAGTGCGCTAGTTGTGTCCG 60.944 55.000 9.73 0.00 0.00 4.79
1728 2296 2.048597 TGCGCTAGTTGTGTCCGG 60.049 61.111 9.73 0.00 0.00 5.14
1729 2297 2.048503 GCGCTAGTTGTGTCCGGT 60.049 61.111 0.00 0.00 0.00 5.28
1730 2298 1.666872 GCGCTAGTTGTGTCCGGTT 60.667 57.895 0.00 0.00 0.00 4.44
1731 2299 0.388907 GCGCTAGTTGTGTCCGGTTA 60.389 55.000 0.00 0.00 0.00 2.85
1732 2300 1.625616 CGCTAGTTGTGTCCGGTTAG 58.374 55.000 0.00 0.00 0.00 2.34
1733 2301 1.734707 CGCTAGTTGTGTCCGGTTAGG 60.735 57.143 0.00 0.00 42.97 2.69
1746 2314 4.858850 TCCGGTTAGGATTAGTAGTGTGA 58.141 43.478 0.00 0.00 45.98 3.58
1747 2315 5.452255 TCCGGTTAGGATTAGTAGTGTGAT 58.548 41.667 0.00 0.00 45.98 3.06
1748 2316 5.533903 TCCGGTTAGGATTAGTAGTGTGATC 59.466 44.000 0.00 0.00 45.98 2.92
1749 2317 5.301045 CCGGTTAGGATTAGTAGTGTGATCA 59.699 44.000 0.00 0.00 45.00 2.92
1750 2318 6.439599 CGGTTAGGATTAGTAGTGTGATCAG 58.560 44.000 0.00 0.00 0.00 2.90
1751 2319 6.217294 GGTTAGGATTAGTAGTGTGATCAGC 58.783 44.000 0.00 0.00 0.00 4.26
1752 2320 4.576216 AGGATTAGTAGTGTGATCAGCG 57.424 45.455 0.00 0.00 0.00 5.18
1753 2321 3.954904 AGGATTAGTAGTGTGATCAGCGT 59.045 43.478 0.00 0.00 0.00 5.07
1754 2322 4.402793 AGGATTAGTAGTGTGATCAGCGTT 59.597 41.667 0.00 0.00 0.00 4.84
1755 2323 4.504461 GGATTAGTAGTGTGATCAGCGTTG 59.496 45.833 0.00 0.00 0.00 4.10
1756 2324 1.714794 AGTAGTGTGATCAGCGTTGC 58.285 50.000 0.00 0.00 0.00 4.17
1757 2325 0.721718 GTAGTGTGATCAGCGTTGCC 59.278 55.000 0.00 0.00 0.00 4.52
1758 2326 0.735978 TAGTGTGATCAGCGTTGCCG 60.736 55.000 0.00 0.00 37.07 5.69
1759 2327 2.741985 TGTGATCAGCGTTGCCGG 60.742 61.111 0.00 0.00 33.68 6.13
1761 2329 1.447140 GTGATCAGCGTTGCCGGTA 60.447 57.895 1.90 0.00 44.18 4.02
1762 2330 1.017177 GTGATCAGCGTTGCCGGTAA 61.017 55.000 0.00 0.00 44.18 2.85
1763 2331 0.107897 TGATCAGCGTTGCCGGTAAT 60.108 50.000 8.64 0.00 44.18 1.89
1764 2332 1.014352 GATCAGCGTTGCCGGTAATT 58.986 50.000 8.64 0.00 44.18 1.40
1765 2333 2.206750 GATCAGCGTTGCCGGTAATTA 58.793 47.619 8.64 0.00 44.18 1.40
1766 2334 2.096220 TCAGCGTTGCCGGTAATTAA 57.904 45.000 8.64 0.00 44.18 1.40
1767 2335 2.424557 TCAGCGTTGCCGGTAATTAAA 58.575 42.857 8.64 0.00 44.18 1.52
1768 2336 3.011119 TCAGCGTTGCCGGTAATTAAAT 58.989 40.909 8.64 0.00 44.18 1.40
1769 2337 3.440872 TCAGCGTTGCCGGTAATTAAATT 59.559 39.130 8.64 0.00 44.18 1.82
1770 2338 4.634883 TCAGCGTTGCCGGTAATTAAATTA 59.365 37.500 8.64 0.00 44.18 1.40
1771 2339 4.967575 CAGCGTTGCCGGTAATTAAATTAG 59.032 41.667 8.64 0.00 44.18 1.73
1772 2340 4.035909 AGCGTTGCCGGTAATTAAATTAGG 59.964 41.667 8.64 0.00 44.16 2.69
1773 2341 4.035441 GCGTTGCCGGTAATTAAATTAGGA 59.965 41.667 8.64 0.00 33.68 2.94
1774 2342 5.448904 GCGTTGCCGGTAATTAAATTAGGAA 60.449 40.000 8.64 0.00 33.68 3.36
1775 2343 6.553524 CGTTGCCGGTAATTAAATTAGGAAA 58.446 36.000 8.64 0.00 0.00 3.13
1776 2344 6.689669 CGTTGCCGGTAATTAAATTAGGAAAG 59.310 38.462 8.64 0.00 0.00 2.62
1777 2345 7.541162 GTTGCCGGTAATTAAATTAGGAAAGT 58.459 34.615 8.64 0.00 0.00 2.66
1778 2346 7.706100 TGCCGGTAATTAAATTAGGAAAGTT 57.294 32.000 1.90 0.00 0.00 2.66
1779 2347 8.804912 TGCCGGTAATTAAATTAGGAAAGTTA 57.195 30.769 1.90 0.00 0.00 2.24
1780 2348 9.411189 TGCCGGTAATTAAATTAGGAAAGTTAT 57.589 29.630 1.90 0.00 0.00 1.89
1781 2349 9.673454 GCCGGTAATTAAATTAGGAAAGTTATG 57.327 33.333 1.90 0.00 0.00 1.90
1788 2356 8.789825 TTAAATTAGGAAAGTTATGTACGGCA 57.210 30.769 0.00 0.00 0.00 5.69
1789 2357 7.690952 AAATTAGGAAAGTTATGTACGGCAA 57.309 32.000 0.00 0.00 0.00 4.52
1790 2358 6.673154 ATTAGGAAAGTTATGTACGGCAAC 57.327 37.500 0.00 0.00 0.00 4.17
1791 2359 4.010667 AGGAAAGTTATGTACGGCAACA 57.989 40.909 6.76 0.00 0.00 3.33
1792 2360 3.749609 AGGAAAGTTATGTACGGCAACAC 59.250 43.478 6.76 0.00 30.75 3.32
1793 2361 3.120095 GGAAAGTTATGTACGGCAACACC 60.120 47.826 6.76 4.21 30.75 4.16
1794 2362 2.843401 AGTTATGTACGGCAACACCA 57.157 45.000 6.76 0.00 39.03 4.17
1795 2363 3.128852 AGTTATGTACGGCAACACCAA 57.871 42.857 6.76 0.00 39.03 3.67
1796 2364 3.071479 AGTTATGTACGGCAACACCAAG 58.929 45.455 6.76 0.00 39.03 3.61
1797 2365 3.068560 GTTATGTACGGCAACACCAAGA 58.931 45.455 0.00 0.00 39.03 3.02
1798 2366 1.808411 ATGTACGGCAACACCAAGAG 58.192 50.000 0.00 0.00 39.03 2.85
1799 2367 0.466543 TGTACGGCAACACCAAGAGT 59.533 50.000 0.00 0.00 39.03 3.24
1800 2368 1.687660 TGTACGGCAACACCAAGAGTA 59.312 47.619 0.00 0.00 39.03 2.59
1801 2369 2.064014 GTACGGCAACACCAAGAGTAC 58.936 52.381 0.00 0.00 39.03 2.73
1802 2370 0.756903 ACGGCAACACCAAGAGTACT 59.243 50.000 0.00 0.00 39.03 2.73
1803 2371 1.965643 ACGGCAACACCAAGAGTACTA 59.034 47.619 0.00 0.00 39.03 1.82
1804 2372 2.366266 ACGGCAACACCAAGAGTACTAA 59.634 45.455 0.00 0.00 39.03 2.24
1805 2373 2.735134 CGGCAACACCAAGAGTACTAAC 59.265 50.000 0.00 0.00 39.03 2.34
1806 2374 3.072211 GGCAACACCAAGAGTACTAACC 58.928 50.000 0.00 0.00 38.86 2.85
1807 2375 2.735134 GCAACACCAAGAGTACTAACCG 59.265 50.000 0.00 0.00 0.00 4.44
1808 2376 3.801293 GCAACACCAAGAGTACTAACCGT 60.801 47.826 0.00 0.00 0.00 4.83
1809 2377 4.559300 GCAACACCAAGAGTACTAACCGTA 60.559 45.833 0.00 0.00 0.00 4.02
1827 2395 9.411801 CTAACCGTACGTGAGTTAGTATATAGA 57.588 37.037 23.54 3.35 46.40 1.98
1828 2396 8.839310 AACCGTACGTGAGTTAGTATATAGAT 57.161 34.615 15.21 0.00 46.40 1.98
1829 2397 8.249327 ACCGTACGTGAGTTAGTATATAGATG 57.751 38.462 15.21 0.00 46.40 2.90
1830 2398 8.090831 ACCGTACGTGAGTTAGTATATAGATGA 58.909 37.037 15.21 0.00 46.40 2.92
1831 2399 8.593842 CCGTACGTGAGTTAGTATATAGATGAG 58.406 40.741 15.21 0.00 46.40 2.90
1832 2400 9.351570 CGTACGTGAGTTAGTATATAGATGAGA 57.648 37.037 7.22 0.00 46.40 3.27
1835 2403 9.426837 ACGTGAGTTAGTATATAGATGAGAGTC 57.573 37.037 0.00 0.00 46.40 3.36
1836 2404 8.875803 CGTGAGTTAGTATATAGATGAGAGTCC 58.124 40.741 0.00 0.00 0.00 3.85
1837 2405 9.953565 GTGAGTTAGTATATAGATGAGAGTCCT 57.046 37.037 0.00 0.00 0.00 3.85
1847 2415 5.582950 AGATGAGAGTCCTAGTCATAGCT 57.417 43.478 0.00 0.00 30.93 3.32
1848 2416 6.696042 AGATGAGAGTCCTAGTCATAGCTA 57.304 41.667 0.00 0.00 30.93 3.32
1849 2417 7.270832 AGATGAGAGTCCTAGTCATAGCTAT 57.729 40.000 0.00 0.00 30.93 2.97
1850 2418 7.338710 AGATGAGAGTCCTAGTCATAGCTATC 58.661 42.308 2.34 0.00 30.93 2.08
1851 2419 5.811190 TGAGAGTCCTAGTCATAGCTATCC 58.189 45.833 2.34 0.00 0.00 2.59
1852 2420 4.839121 AGAGTCCTAGTCATAGCTATCCG 58.161 47.826 2.34 0.00 0.00 4.18
1853 2421 4.532916 AGAGTCCTAGTCATAGCTATCCGA 59.467 45.833 2.34 0.00 0.00 4.55
1854 2422 4.839121 AGTCCTAGTCATAGCTATCCGAG 58.161 47.826 2.34 3.47 0.00 4.63
1855 2423 4.287585 AGTCCTAGTCATAGCTATCCGAGT 59.712 45.833 2.34 5.04 0.00 4.18
1856 2424 5.484644 AGTCCTAGTCATAGCTATCCGAGTA 59.515 44.000 2.34 5.94 0.00 2.59
1857 2425 5.813672 GTCCTAGTCATAGCTATCCGAGTAG 59.186 48.000 19.79 19.79 33.18 2.57
1858 2426 5.720520 TCCTAGTCATAGCTATCCGAGTAGA 59.279 44.000 24.49 14.55 34.63 2.59
1859 2427 6.046593 CCTAGTCATAGCTATCCGAGTAGAG 58.953 48.000 24.49 16.14 34.63 2.43
1860 2428 4.258543 AGTCATAGCTATCCGAGTAGAGC 58.741 47.826 2.34 0.00 35.07 4.09
1861 2429 4.019681 AGTCATAGCTATCCGAGTAGAGCT 60.020 45.833 2.34 6.72 46.69 4.09
1864 2432 3.343941 AGCTATCCGAGTAGAGCTAGG 57.656 52.381 0.00 0.00 43.37 3.02
1865 2433 5.395879 CATAGCTATCCGAGTAGAGCTAGGA 60.396 48.000 2.34 0.00 46.86 2.94
1869 2437 3.128852 TCCGAGTAGAGCTAGGATGTC 57.871 52.381 0.00 0.00 42.85 3.06
1870 2438 2.438392 TCCGAGTAGAGCTAGGATGTCA 59.562 50.000 0.00 0.00 42.85 3.58
1871 2439 3.073209 TCCGAGTAGAGCTAGGATGTCAT 59.927 47.826 0.00 0.00 42.85 3.06
1872 2440 3.190327 CCGAGTAGAGCTAGGATGTCATG 59.810 52.174 0.00 0.00 41.83 3.07
1873 2441 3.818210 CGAGTAGAGCTAGGATGTCATGT 59.182 47.826 0.00 0.00 0.00 3.21
1874 2442 4.083537 CGAGTAGAGCTAGGATGTCATGTC 60.084 50.000 0.00 0.00 0.00 3.06
1875 2443 4.148838 AGTAGAGCTAGGATGTCATGTCC 58.851 47.826 0.00 0.00 35.94 4.02
1876 2444 1.959985 AGAGCTAGGATGTCATGTCCG 59.040 52.381 0.00 0.00 40.76 4.79
1877 2445 1.683917 GAGCTAGGATGTCATGTCCGT 59.316 52.381 0.00 0.00 40.76 4.69
1878 2446 1.410517 AGCTAGGATGTCATGTCCGTG 59.589 52.381 0.00 0.00 40.76 4.94
1879 2447 1.137086 GCTAGGATGTCATGTCCGTGT 59.863 52.381 0.00 0.00 40.76 4.49
1880 2448 2.361119 GCTAGGATGTCATGTCCGTGTA 59.639 50.000 0.00 0.00 40.76 2.90
1881 2449 2.961526 AGGATGTCATGTCCGTGTAC 57.038 50.000 0.00 0.00 40.76 2.90
1882 2450 1.134367 AGGATGTCATGTCCGTGTACG 59.866 52.381 0.00 0.00 40.76 3.67
1883 2451 1.135199 GGATGTCATGTCCGTGTACGT 60.135 52.381 3.57 0.00 37.74 3.57
1884 2452 1.917955 GATGTCATGTCCGTGTACGTG 59.082 52.381 0.00 0.00 37.66 4.49
1885 2453 0.669619 TGTCATGTCCGTGTACGTGT 59.330 50.000 0.00 0.00 37.59 4.49
1886 2454 1.334054 GTCATGTCCGTGTACGTGTC 58.666 55.000 0.00 0.00 37.59 3.67
1887 2455 0.110101 TCATGTCCGTGTACGTGTCG 60.110 55.000 0.00 0.00 37.59 4.35
1888 2456 0.386352 CATGTCCGTGTACGTGTCGT 60.386 55.000 0.00 0.00 44.35 4.34
1889 2457 0.386352 ATGTCCGTGTACGTGTCGTG 60.386 55.000 0.00 0.00 41.39 4.35
1890 2458 1.009675 GTCCGTGTACGTGTCGTGT 60.010 57.895 0.00 0.00 41.39 4.49
1891 2459 0.592247 GTCCGTGTACGTGTCGTGTT 60.592 55.000 0.00 0.00 41.39 3.32
1892 2460 0.940833 TCCGTGTACGTGTCGTGTTA 59.059 50.000 0.00 0.00 41.39 2.41
1893 2461 1.069973 TCCGTGTACGTGTCGTGTTAG 60.070 52.381 0.00 0.00 41.39 2.34
1894 2462 1.321016 CGTGTACGTGTCGTGTTAGG 58.679 55.000 0.00 0.00 41.39 2.69
1895 2463 1.334059 CGTGTACGTGTCGTGTTAGGT 60.334 52.381 0.00 0.00 41.39 3.08
1896 2464 2.731217 GTGTACGTGTCGTGTTAGGTT 58.269 47.619 0.00 0.00 41.39 3.50
1897 2465 3.605922 CGTGTACGTGTCGTGTTAGGTTA 60.606 47.826 0.00 0.00 41.39 2.85
1898 2466 4.475944 GTGTACGTGTCGTGTTAGGTTAT 58.524 43.478 0.00 0.00 41.39 1.89
1899 2467 4.321745 GTGTACGTGTCGTGTTAGGTTATG 59.678 45.833 0.00 0.00 41.39 1.90
1900 2468 2.950433 ACGTGTCGTGTTAGGTTATGG 58.050 47.619 0.00 0.00 39.18 2.74
1901 2469 2.297033 ACGTGTCGTGTTAGGTTATGGT 59.703 45.455 0.00 0.00 39.18 3.55
1902 2470 2.664568 CGTGTCGTGTTAGGTTATGGTG 59.335 50.000 0.00 0.00 0.00 4.17
1903 2471 2.997986 GTGTCGTGTTAGGTTATGGTGG 59.002 50.000 0.00 0.00 0.00 4.61
1904 2472 2.898612 TGTCGTGTTAGGTTATGGTGGA 59.101 45.455 0.00 0.00 0.00 4.02
1905 2473 3.056393 TGTCGTGTTAGGTTATGGTGGAG 60.056 47.826 0.00 0.00 0.00 3.86
1906 2474 3.056322 GTCGTGTTAGGTTATGGTGGAGT 60.056 47.826 0.00 0.00 0.00 3.85
1907 2475 3.194116 TCGTGTTAGGTTATGGTGGAGTC 59.806 47.826 0.00 0.00 0.00 3.36
1908 2476 3.518590 GTGTTAGGTTATGGTGGAGTCG 58.481 50.000 0.00 0.00 0.00 4.18
1909 2477 2.498481 TGTTAGGTTATGGTGGAGTCGG 59.502 50.000 0.00 0.00 0.00 4.79
1910 2478 1.117150 TAGGTTATGGTGGAGTCGGC 58.883 55.000 0.00 0.00 0.00 5.54
1911 2479 0.617820 AGGTTATGGTGGAGTCGGCT 60.618 55.000 0.00 0.00 0.00 5.52
1912 2480 1.117150 GGTTATGGTGGAGTCGGCTA 58.883 55.000 0.00 0.00 0.00 3.93
1913 2481 1.202498 GGTTATGGTGGAGTCGGCTAC 60.202 57.143 0.00 0.00 0.00 3.58
1914 2482 0.742505 TTATGGTGGAGTCGGCTACG 59.257 55.000 0.00 0.00 42.74 3.51
1915 2483 1.731433 TATGGTGGAGTCGGCTACGC 61.731 60.000 3.57 3.57 40.69 4.42
1916 2484 4.849329 GGTGGAGTCGGCTACGCG 62.849 72.222 6.74 3.53 36.94 6.01
1926 2494 3.319904 GCTACGCGCCATGGTTAG 58.680 61.111 14.67 10.04 0.00 2.34
1927 2495 2.244651 GCTACGCGCCATGGTTAGG 61.245 63.158 14.67 3.16 0.00 2.69
1928 2496 1.440060 CTACGCGCCATGGTTAGGA 59.560 57.895 14.67 0.18 0.00 2.94
1929 2497 0.874607 CTACGCGCCATGGTTAGGAC 60.875 60.000 14.67 0.00 0.00 3.85
1930 2498 2.300850 TACGCGCCATGGTTAGGACC 62.301 60.000 14.67 0.00 46.71 4.46
1961 2529 1.593933 GCGTGAGTTTTGTAACACCGA 59.406 47.619 0.00 0.00 36.70 4.69
1962 2530 2.222445 GCGTGAGTTTTGTAACACCGAT 59.778 45.455 0.00 0.00 36.70 4.18
1963 2531 3.429543 GCGTGAGTTTTGTAACACCGATA 59.570 43.478 0.00 0.00 36.70 2.92
1964 2532 4.084433 GCGTGAGTTTTGTAACACCGATAA 60.084 41.667 0.00 0.00 36.70 1.75
1965 2533 5.368374 CGTGAGTTTTGTAACACCGATAAC 58.632 41.667 0.00 0.00 36.70 1.89
1966 2534 5.050904 CGTGAGTTTTGTAACACCGATAACA 60.051 40.000 0.00 0.00 36.70 2.41
1976 2544 7.211573 TGTAACACCGATAACAGAGAGAAAAA 58.788 34.615 0.00 0.00 0.00 1.94
1977 2545 6.787085 AACACCGATAACAGAGAGAAAAAG 57.213 37.500 0.00 0.00 0.00 2.27
1984 2553 8.774586 CCGATAACAGAGAGAAAAAGAGAAAAA 58.225 33.333 0.00 0.00 0.00 1.94
2009 2581 2.586648 AAGAGGAAAAAGGGCACGAT 57.413 45.000 0.00 0.00 0.00 3.73
2013 2585 1.276989 AGGAAAAAGGGCACGATACGA 59.723 47.619 0.00 0.00 0.00 3.43
2014 2586 1.664151 GGAAAAAGGGCACGATACGAG 59.336 52.381 0.00 0.00 0.00 4.18
2021 2598 1.141019 GCACGATACGAGCCCTTGA 59.859 57.895 0.00 0.00 37.48 3.02
2037 2615 5.539955 AGCCCTTGACTATCAATTTTTGTGT 59.460 36.000 0.00 0.00 35.59 3.72
2041 2619 4.225984 TGACTATCAATTTTTGTGTGCGC 58.774 39.130 0.00 0.00 0.00 6.09
2045 2623 1.585668 TCAATTTTTGTGTGCGCGTTG 59.414 42.857 8.43 0.00 0.00 4.10
2048 2626 1.419374 TTTTTGTGTGCGCGTTGTTT 58.581 40.000 8.43 0.00 0.00 2.83
2051 2629 1.067743 TTGTGTGCGCGTTGTTTGTG 61.068 50.000 8.43 0.00 0.00 3.33
2053 2631 0.247735 GTGTGCGCGTTGTTTGTGTA 60.248 50.000 8.43 0.00 0.00 2.90
2058 2636 2.531912 TGCGCGTTGTTTGTGTAATTTG 59.468 40.909 8.43 0.00 0.00 2.32
2069 2647 7.075121 TGTTTGTGTAATTTGATGTGATCGAC 58.925 34.615 0.00 0.00 0.00 4.20
2091 2670 2.871633 CCTGTGGGCAATTTTCAACAAC 59.128 45.455 0.00 0.00 0.00 3.32
2178 2757 3.562635 GCGGGCAATATAGTCGCC 58.437 61.111 5.43 5.43 45.47 5.54
2233 2816 0.798771 CTGGTGTAGCGACGAAGAGC 60.799 60.000 0.00 0.00 35.35 4.09
2259 2842 2.865343 CGATTTAGTCGCTAGGTGGT 57.135 50.000 0.00 0.00 44.33 4.16
2263 2879 0.530744 TTAGTCGCTAGGTGGTGCAG 59.469 55.000 0.00 0.00 0.00 4.41
2279 2895 3.060000 AGCGACGTGGGTGATCGA 61.060 61.111 0.08 0.00 38.10 3.59
2282 2898 2.579787 GACGTGGGTGATCGAGCG 60.580 66.667 0.00 0.00 0.00 5.03
2300 2916 2.049802 GTTGTCGTTCGGCGGAGA 60.050 61.111 7.21 0.88 41.72 3.71
2321 2937 2.654877 GACGAGAAGGCGGTGGAA 59.345 61.111 0.00 0.00 35.12 3.53
2322 2938 1.446272 GACGAGAAGGCGGTGGAAG 60.446 63.158 0.00 0.00 35.12 3.46
2323 2939 2.125512 CGAGAAGGCGGTGGAAGG 60.126 66.667 0.00 0.00 0.00 3.46
2324 2940 2.646175 CGAGAAGGCGGTGGAAGGA 61.646 63.158 0.00 0.00 0.00 3.36
2325 2941 1.219393 GAGAAGGCGGTGGAAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
2326 2942 1.229209 AGAAGGCGGTGGAAGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
2327 2943 0.618968 AGAAGGCGGTGGAAGGAGAT 60.619 55.000 0.00 0.00 0.00 2.75
2328 2944 0.179070 GAAGGCGGTGGAAGGAGATC 60.179 60.000 0.00 0.00 0.00 2.75
2344 3010 2.830704 GATCGTTGACGGGAGCGGTT 62.831 60.000 3.48 0.00 40.29 4.44
2361 3027 3.399105 TTGTGCCGAGGTGCAGTGT 62.399 57.895 0.00 0.00 43.02 3.55
2372 3038 4.619394 CGAGGTGCAGTGTTAGAAGATCTT 60.619 45.833 7.95 7.95 0.00 2.40
2410 3076 2.726351 GGGAGTGAGGAAGAGGCGG 61.726 68.421 0.00 0.00 0.00 6.13
2482 3148 0.604780 CCAAGAGCTCAGGTGTGTGG 60.605 60.000 17.77 7.35 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.154035 CCGGCGATTTTGTCCTTGC 60.154 57.895 9.30 0.00 0.00 4.01
15 16 0.878416 CAACCTTTTGAATCCGGCGA 59.122 50.000 9.30 0.00 34.24 5.54
17 18 0.246360 CCCAACCTTTTGAATCCGGC 59.754 55.000 0.00 0.00 34.24 6.13
32 33 1.080638 AGGGGTGCTAATTGTCCCAA 58.919 50.000 0.00 0.00 41.51 4.12
56 57 2.821378 TGGAACAGTGATGCTTGGAATG 59.179 45.455 0.00 0.00 0.00 2.67
57 58 3.159213 TGGAACAGTGATGCTTGGAAT 57.841 42.857 0.00 0.00 0.00 3.01
72 73 1.404035 GACCACCTTGTGTGTTGGAAC 59.596 52.381 0.00 0.00 43.85 3.62
104 105 6.937436 AACCACGGGAATATATTCTTGTTC 57.063 37.500 21.80 7.56 37.00 3.18
110 111 7.361457 CCGGATTTTAACCACGGGAATATATTC 60.361 40.741 15.88 15.88 40.79 1.75
122 123 3.926821 TGCTTTCCGGATTTTAACCAC 57.073 42.857 4.15 0.00 0.00 4.16
143 144 5.686387 GCATACATGGTGTTGGTGGAGTATA 60.686 44.000 0.00 0.00 0.00 1.47
144 145 4.780815 CATACATGGTGTTGGTGGAGTAT 58.219 43.478 0.00 0.00 0.00 2.12
148 150 1.074566 TGCATACATGGTGTTGGTGGA 59.925 47.619 0.00 0.00 0.00 4.02
173 175 4.141711 ACTGTGACAACTACCACATCAAGT 60.142 41.667 0.00 0.00 41.75 3.16
185 187 1.070134 ACATGGCGTACTGTGACAACT 59.930 47.619 0.00 0.00 0.00 3.16
188 190 0.966179 AGACATGGCGTACTGTGACA 59.034 50.000 0.00 0.00 0.00 3.58
243 245 1.880027 CAAGTCCCAAACACACTAGCC 59.120 52.381 0.00 0.00 0.00 3.93
244 246 2.290641 CACAAGTCCCAAACACACTAGC 59.709 50.000 0.00 0.00 0.00 3.42
245 247 3.804036 TCACAAGTCCCAAACACACTAG 58.196 45.455 0.00 0.00 0.00 2.57
247 249 2.799126 TCACAAGTCCCAAACACACT 57.201 45.000 0.00 0.00 0.00 3.55
257 266 5.125100 TCTTTTCATGCATTCACAAGTCC 57.875 39.130 0.00 0.00 0.00 3.85
330 341 2.031919 TCGCCCGTCAACTTGCAT 59.968 55.556 0.00 0.00 0.00 3.96
376 387 0.030369 GTACGTGGGATCTGCGTAGG 59.970 60.000 13.90 0.00 40.94 3.18
529 954 7.564660 AGCTAGCTGATAGATGGCTTAGAATAT 59.435 37.037 18.57 0.00 46.30 1.28
611 1047 0.044092 TGTCCCAGGGCTAGGATTGA 59.956 55.000 0.00 0.00 33.88 2.57
693 1137 5.555017 AGTGAGCACTACAAGAATGTTGAT 58.445 37.500 0.41 0.00 40.43 2.57
758 1202 4.665212 CGTGATAAAGCATGTGAAAGCAT 58.335 39.130 0.00 0.00 0.00 3.79
809 1254 1.888512 ACATTGCAACTAGCCTTGGTG 59.111 47.619 0.00 0.00 44.83 4.17
850 1307 7.928167 TGAAGCTCTCATGGTGTATTTATAGTG 59.072 37.037 0.00 0.00 0.00 2.74
867 1327 1.447945 GGCTTTGTCCTGAAGCTCTC 58.552 55.000 8.52 0.00 46.64 3.20
873 1333 0.899717 GGCATGGGCTTTGTCCTGAA 60.900 55.000 0.00 0.00 40.87 3.02
895 1355 2.743126 CTGAGAGAAGCTGGCTTGAAAG 59.257 50.000 12.79 0.24 36.26 2.62
938 1440 2.464157 AGCAAGTAAGGAGCTGTGAC 57.536 50.000 0.00 0.00 37.20 3.67
968 1475 2.892425 GGTGGCCGATCAGCTTCG 60.892 66.667 0.00 0.66 38.83 3.79
970 1477 1.965754 GAGAGGTGGCCGATCAGCTT 61.966 60.000 0.00 2.83 44.35 3.74
1038 1547 1.078201 TGCTCTTGCACATCGCTACG 61.078 55.000 0.00 0.00 45.31 3.51
1105 1639 2.033448 GACCACAACGCCCATGGA 59.967 61.111 15.22 0.00 36.94 3.41
1109 1643 2.741092 GAGAGACCACAACGCCCA 59.259 61.111 0.00 0.00 0.00 5.36
1115 1649 1.402852 CGATCTTGCGAGAGACCACAA 60.403 52.381 10.06 0.00 34.85 3.33
1303 1843 1.303317 GGGGATGCAGTGTTCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
1333 1873 2.224572 TGTAATGGTAGTTGGCGTGGTT 60.225 45.455 0.00 0.00 0.00 3.67
1340 1880 6.406370 TCATCTTCAGTGTAATGGTAGTTGG 58.594 40.000 0.00 0.00 0.00 3.77
1359 1908 6.589135 TGAATCAAGTAGCACATCATCATCT 58.411 36.000 0.00 0.00 0.00 2.90
1423 1981 4.452825 ACTTCTCCATTGCTCATGATCAG 58.547 43.478 0.09 0.00 34.31 2.90
1430 1988 2.290514 CCCTCAACTTCTCCATTGCTCA 60.291 50.000 0.00 0.00 0.00 4.26
1438 1996 1.488393 CTCCATCCCCTCAACTTCTCC 59.512 57.143 0.00 0.00 0.00 3.71
1453 2011 2.240667 CCTCCTCCATGTTGAACTCCAT 59.759 50.000 0.00 0.00 0.00 3.41
1476 2034 5.690997 ACATATCAGCAGCTTGATCAATG 57.309 39.130 8.96 6.64 38.65 2.82
1515 2073 1.630126 ATCCCTCATTCAGCCGCTGT 61.630 55.000 19.77 0.00 32.61 4.40
1561 2120 6.223852 ACAACGCCCTAATCTAAGATACATG 58.776 40.000 0.00 0.00 0.00 3.21
1562 2121 6.267928 AGACAACGCCCTAATCTAAGATACAT 59.732 38.462 0.00 0.00 0.00 2.29
1563 2122 5.597182 AGACAACGCCCTAATCTAAGATACA 59.403 40.000 0.00 0.00 0.00 2.29
1564 2123 6.086785 AGACAACGCCCTAATCTAAGATAC 57.913 41.667 0.00 0.00 0.00 2.24
1567 2126 4.710375 AGAAGACAACGCCCTAATCTAAGA 59.290 41.667 0.00 0.00 0.00 2.10
1573 2132 5.414765 CCTAAAAAGAAGACAACGCCCTAAT 59.585 40.000 0.00 0.00 0.00 1.73
1622 2186 7.605691 CCTCAACTCCTATTCATATTGATGTCC 59.394 40.741 0.00 0.00 34.41 4.02
1625 2189 7.166851 AGCCTCAACTCCTATTCATATTGATG 58.833 38.462 0.00 0.00 0.00 3.07
1676 2244 9.108284 CAAATTCAAACTTGTTTGGATTAACCT 57.892 29.630 24.52 12.25 38.75 3.50
1685 2253 7.492344 ACTTCTAGCCAAATTCAAACTTGTTTG 59.508 33.333 17.27 17.27 0.00 2.93
1686 2254 7.492344 CACTTCTAGCCAAATTCAAACTTGTTT 59.508 33.333 0.00 0.00 0.00 2.83
1687 2255 6.980397 CACTTCTAGCCAAATTCAAACTTGTT 59.020 34.615 0.00 0.00 0.00 2.83
1688 2256 6.507023 CACTTCTAGCCAAATTCAAACTTGT 58.493 36.000 0.00 0.00 0.00 3.16
1689 2257 5.403466 GCACTTCTAGCCAAATTCAAACTTG 59.597 40.000 0.00 0.00 0.00 3.16
1690 2258 5.532557 GCACTTCTAGCCAAATTCAAACTT 58.467 37.500 0.00 0.00 0.00 2.66
1691 2259 4.320494 CGCACTTCTAGCCAAATTCAAACT 60.320 41.667 0.00 0.00 0.00 2.66
1692 2260 3.914364 CGCACTTCTAGCCAAATTCAAAC 59.086 43.478 0.00 0.00 0.00 2.93
1693 2261 3.611530 GCGCACTTCTAGCCAAATTCAAA 60.612 43.478 0.30 0.00 0.00 2.69
1694 2262 2.095263 GCGCACTTCTAGCCAAATTCAA 60.095 45.455 0.30 0.00 0.00 2.69
1695 2263 1.468520 GCGCACTTCTAGCCAAATTCA 59.531 47.619 0.30 0.00 0.00 2.57
1696 2264 1.740025 AGCGCACTTCTAGCCAAATTC 59.260 47.619 11.47 0.00 0.00 2.17
1697 2265 1.826385 AGCGCACTTCTAGCCAAATT 58.174 45.000 11.47 0.00 0.00 1.82
1698 2266 2.093447 ACTAGCGCACTTCTAGCCAAAT 60.093 45.455 11.47 0.00 37.60 2.32
1699 2267 1.275291 ACTAGCGCACTTCTAGCCAAA 59.725 47.619 11.47 0.00 37.60 3.28
1700 2268 0.895530 ACTAGCGCACTTCTAGCCAA 59.104 50.000 11.47 0.00 37.60 4.52
1701 2269 0.895530 AACTAGCGCACTTCTAGCCA 59.104 50.000 11.47 0.00 37.60 4.75
1702 2270 1.281899 CAACTAGCGCACTTCTAGCC 58.718 55.000 11.47 0.00 37.60 3.93
1703 2271 1.656095 CACAACTAGCGCACTTCTAGC 59.344 52.381 11.47 0.00 37.60 3.42
1704 2272 2.917971 GACACAACTAGCGCACTTCTAG 59.082 50.000 11.47 4.40 39.43 2.43
1705 2273 2.352421 GGACACAACTAGCGCACTTCTA 60.352 50.000 11.47 0.00 0.00 2.10
1706 2274 1.605712 GGACACAACTAGCGCACTTCT 60.606 52.381 11.47 0.00 0.00 2.85
1707 2275 0.790814 GGACACAACTAGCGCACTTC 59.209 55.000 11.47 0.00 0.00 3.01
1708 2276 0.944311 CGGACACAACTAGCGCACTT 60.944 55.000 11.47 0.00 0.00 3.16
1709 2277 1.372997 CGGACACAACTAGCGCACT 60.373 57.895 11.47 0.00 0.00 4.40
1710 2278 2.380410 CCGGACACAACTAGCGCAC 61.380 63.158 11.47 0.00 0.00 5.34
1711 2279 2.048597 CCGGACACAACTAGCGCA 60.049 61.111 11.47 0.00 0.00 6.09
1712 2280 0.388907 TAACCGGACACAACTAGCGC 60.389 55.000 9.46 0.00 0.00 5.92
1713 2281 1.625616 CTAACCGGACACAACTAGCG 58.374 55.000 9.46 0.00 0.00 4.26
1714 2282 1.547372 TCCTAACCGGACACAACTAGC 59.453 52.381 9.46 0.00 36.69 3.42
1715 2283 4.467198 AATCCTAACCGGACACAACTAG 57.533 45.455 9.46 0.00 46.80 2.57
1716 2284 5.018809 ACTAATCCTAACCGGACACAACTA 58.981 41.667 9.46 0.00 46.80 2.24
1717 2285 3.836562 ACTAATCCTAACCGGACACAACT 59.163 43.478 9.46 0.00 46.80 3.16
1718 2286 4.198028 ACTAATCCTAACCGGACACAAC 57.802 45.455 9.46 0.00 46.80 3.32
1719 2287 5.018809 ACTACTAATCCTAACCGGACACAA 58.981 41.667 9.46 0.00 46.80 3.33
1720 2288 4.400251 CACTACTAATCCTAACCGGACACA 59.600 45.833 9.46 0.00 46.80 3.72
1721 2289 4.400567 ACACTACTAATCCTAACCGGACAC 59.599 45.833 9.46 0.00 46.80 3.67
1722 2290 4.400251 CACACTACTAATCCTAACCGGACA 59.600 45.833 9.46 0.00 46.80 4.02
1723 2291 4.641989 TCACACTACTAATCCTAACCGGAC 59.358 45.833 9.46 0.00 46.80 4.79
1725 2293 5.301045 TGATCACACTACTAATCCTAACCGG 59.699 44.000 0.00 0.00 0.00 5.28
1726 2294 6.387041 TGATCACACTACTAATCCTAACCG 57.613 41.667 0.00 0.00 0.00 4.44
1727 2295 6.217294 GCTGATCACACTACTAATCCTAACC 58.783 44.000 0.00 0.00 0.00 2.85
1728 2296 5.915758 CGCTGATCACACTACTAATCCTAAC 59.084 44.000 0.00 0.00 0.00 2.34
1729 2297 5.593095 ACGCTGATCACACTACTAATCCTAA 59.407 40.000 0.00 0.00 0.00 2.69
1730 2298 5.131067 ACGCTGATCACACTACTAATCCTA 58.869 41.667 0.00 0.00 0.00 2.94
1731 2299 3.954904 ACGCTGATCACACTACTAATCCT 59.045 43.478 0.00 0.00 0.00 3.24
1732 2300 4.308899 ACGCTGATCACACTACTAATCC 57.691 45.455 0.00 0.00 0.00 3.01
1733 2301 4.026475 GCAACGCTGATCACACTACTAATC 60.026 45.833 0.00 0.00 0.00 1.75
1734 2302 3.865745 GCAACGCTGATCACACTACTAAT 59.134 43.478 0.00 0.00 0.00 1.73
1735 2303 3.250744 GCAACGCTGATCACACTACTAA 58.749 45.455 0.00 0.00 0.00 2.24
1736 2304 2.416836 GGCAACGCTGATCACACTACTA 60.417 50.000 0.00 0.00 0.00 1.82
1737 2305 1.673033 GGCAACGCTGATCACACTACT 60.673 52.381 0.00 0.00 0.00 2.57
1738 2306 0.721718 GGCAACGCTGATCACACTAC 59.278 55.000 0.00 0.00 0.00 2.73
1739 2307 3.137484 GGCAACGCTGATCACACTA 57.863 52.632 0.00 0.00 0.00 2.74
1740 2308 3.972227 GGCAACGCTGATCACACT 58.028 55.556 0.00 0.00 0.00 3.55
1752 2320 7.541162 ACTTTCCTAATTTAATTACCGGCAAC 58.459 34.615 0.00 0.00 0.00 4.17
1753 2321 7.706100 ACTTTCCTAATTTAATTACCGGCAA 57.294 32.000 0.00 0.00 0.00 4.52
1754 2322 7.706100 AACTTTCCTAATTTAATTACCGGCA 57.294 32.000 0.00 0.00 0.00 5.69
1755 2323 9.673454 CATAACTTTCCTAATTTAATTACCGGC 57.327 33.333 0.00 0.00 0.00 6.13
1762 2330 9.398538 TGCCGTACATAACTTTCCTAATTTAAT 57.601 29.630 0.00 0.00 0.00 1.40
1763 2331 8.789825 TGCCGTACATAACTTTCCTAATTTAA 57.210 30.769 0.00 0.00 0.00 1.52
1764 2332 8.667463 GTTGCCGTACATAACTTTCCTAATTTA 58.333 33.333 0.00 0.00 0.00 1.40
1765 2333 7.175293 TGTTGCCGTACATAACTTTCCTAATTT 59.825 33.333 0.00 0.00 0.00 1.82
1766 2334 6.655848 TGTTGCCGTACATAACTTTCCTAATT 59.344 34.615 0.00 0.00 0.00 1.40
1767 2335 6.093082 GTGTTGCCGTACATAACTTTCCTAAT 59.907 38.462 0.00 0.00 0.00 1.73
1768 2336 5.409214 GTGTTGCCGTACATAACTTTCCTAA 59.591 40.000 0.00 0.00 0.00 2.69
1769 2337 4.931002 GTGTTGCCGTACATAACTTTCCTA 59.069 41.667 0.00 0.00 0.00 2.94
1770 2338 3.749609 GTGTTGCCGTACATAACTTTCCT 59.250 43.478 0.00 0.00 0.00 3.36
1771 2339 3.120095 GGTGTTGCCGTACATAACTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
1772 2340 3.499157 TGGTGTTGCCGTACATAACTTTC 59.501 43.478 0.00 0.00 41.21 2.62
1773 2341 3.478509 TGGTGTTGCCGTACATAACTTT 58.521 40.909 0.00 0.00 41.21 2.66
1774 2342 3.128852 TGGTGTTGCCGTACATAACTT 57.871 42.857 0.00 0.00 41.21 2.66
1775 2343 2.843401 TGGTGTTGCCGTACATAACT 57.157 45.000 0.00 0.00 41.21 2.24
1776 2344 3.068560 TCTTGGTGTTGCCGTACATAAC 58.931 45.455 0.00 0.00 41.21 1.89
1777 2345 3.244284 ACTCTTGGTGTTGCCGTACATAA 60.244 43.478 0.00 0.00 41.21 1.90
1778 2346 2.300723 ACTCTTGGTGTTGCCGTACATA 59.699 45.455 0.00 0.00 41.21 2.29
1779 2347 1.071699 ACTCTTGGTGTTGCCGTACAT 59.928 47.619 0.00 0.00 41.21 2.29
1780 2348 0.466543 ACTCTTGGTGTTGCCGTACA 59.533 50.000 0.00 0.00 41.21 2.90
1781 2349 2.064014 GTACTCTTGGTGTTGCCGTAC 58.936 52.381 0.00 0.00 41.21 3.67
1782 2350 1.965643 AGTACTCTTGGTGTTGCCGTA 59.034 47.619 0.00 0.00 41.21 4.02
1783 2351 0.756903 AGTACTCTTGGTGTTGCCGT 59.243 50.000 0.00 0.00 41.21 5.68
1784 2352 2.735134 GTTAGTACTCTTGGTGTTGCCG 59.265 50.000 0.00 0.00 41.21 5.69
1785 2353 3.072211 GGTTAGTACTCTTGGTGTTGCC 58.928 50.000 0.00 0.00 37.90 4.52
1786 2354 2.735134 CGGTTAGTACTCTTGGTGTTGC 59.265 50.000 0.00 0.00 0.00 4.17
1787 2355 3.986277 ACGGTTAGTACTCTTGGTGTTG 58.014 45.455 0.00 0.00 0.00 3.33
1801 2369 9.411801 TCTATATACTAACTCACGTACGGTTAG 57.588 37.037 27.10 27.10 44.39 2.34
1802 2370 9.929180 ATCTATATACTAACTCACGTACGGTTA 57.071 33.333 21.06 16.11 0.00 2.85
1803 2371 8.715998 CATCTATATACTAACTCACGTACGGTT 58.284 37.037 21.06 15.84 0.00 4.44
1804 2372 8.090831 TCATCTATATACTAACTCACGTACGGT 58.909 37.037 21.06 8.22 0.00 4.83
1805 2373 8.471361 TCATCTATATACTAACTCACGTACGG 57.529 38.462 21.06 8.79 0.00 4.02
1806 2374 9.351570 TCTCATCTATATACTAACTCACGTACG 57.648 37.037 15.01 15.01 0.00 3.67
1809 2377 9.426837 GACTCTCATCTATATACTAACTCACGT 57.573 37.037 0.00 0.00 0.00 4.49
1810 2378 8.875803 GGACTCTCATCTATATACTAACTCACG 58.124 40.741 0.00 0.00 0.00 4.35
1811 2379 9.953565 AGGACTCTCATCTATATACTAACTCAC 57.046 37.037 0.00 0.00 0.00 3.51
1821 2389 9.003145 AGCTATGACTAGGACTCTCATCTATAT 57.997 37.037 0.00 0.00 0.00 0.86
1822 2390 8.387333 AGCTATGACTAGGACTCTCATCTATA 57.613 38.462 0.00 0.00 0.00 1.31
1823 2391 7.270832 AGCTATGACTAGGACTCTCATCTAT 57.729 40.000 0.00 0.00 0.00 1.98
1824 2392 6.696042 AGCTATGACTAGGACTCTCATCTA 57.304 41.667 0.00 0.00 0.00 1.98
1825 2393 5.582950 AGCTATGACTAGGACTCTCATCT 57.417 43.478 0.00 0.00 0.00 2.90
1826 2394 6.542370 GGATAGCTATGACTAGGACTCTCATC 59.458 46.154 11.94 0.00 0.00 2.92
1827 2395 6.423182 GGATAGCTATGACTAGGACTCTCAT 58.577 44.000 11.94 0.00 0.00 2.90
1828 2396 5.569832 CGGATAGCTATGACTAGGACTCTCA 60.570 48.000 11.94 0.00 0.00 3.27
1829 2397 4.873827 CGGATAGCTATGACTAGGACTCTC 59.126 50.000 11.94 0.00 0.00 3.20
1830 2398 4.532916 TCGGATAGCTATGACTAGGACTCT 59.467 45.833 11.94 0.00 0.00 3.24
1831 2399 4.834534 TCGGATAGCTATGACTAGGACTC 58.165 47.826 11.94 0.00 0.00 3.36
1832 2400 4.287585 ACTCGGATAGCTATGACTAGGACT 59.712 45.833 11.94 0.00 0.00 3.85
1833 2401 4.581868 ACTCGGATAGCTATGACTAGGAC 58.418 47.826 11.94 0.00 0.00 3.85
1834 2402 4.912317 ACTCGGATAGCTATGACTAGGA 57.088 45.455 11.94 0.00 0.00 2.94
1835 2403 5.979993 TCTACTCGGATAGCTATGACTAGG 58.020 45.833 11.94 0.00 0.00 3.02
1836 2404 5.522460 GCTCTACTCGGATAGCTATGACTAG 59.478 48.000 11.94 7.83 32.18 2.57
1837 2405 5.188163 AGCTCTACTCGGATAGCTATGACTA 59.812 44.000 11.94 0.00 43.29 2.59
1838 2406 4.019681 AGCTCTACTCGGATAGCTATGACT 60.020 45.833 11.94 0.00 43.29 3.41
1839 2407 4.258543 AGCTCTACTCGGATAGCTATGAC 58.741 47.826 11.94 2.90 43.29 3.06
1840 2408 4.561500 AGCTCTACTCGGATAGCTATGA 57.438 45.455 11.94 2.10 43.29 2.15
1841 2409 4.814234 CCTAGCTCTACTCGGATAGCTATG 59.186 50.000 11.94 0.00 44.27 2.23
1842 2410 4.717778 TCCTAGCTCTACTCGGATAGCTAT 59.282 45.833 5.76 5.76 44.27 2.97
1843 2411 4.095211 TCCTAGCTCTACTCGGATAGCTA 58.905 47.826 0.00 0.00 43.29 3.32
1844 2412 2.907696 TCCTAGCTCTACTCGGATAGCT 59.092 50.000 0.00 0.00 46.58 3.32
1845 2413 3.337694 TCCTAGCTCTACTCGGATAGC 57.662 52.381 0.00 0.00 35.38 2.97
1846 2414 4.839121 ACATCCTAGCTCTACTCGGATAG 58.161 47.826 0.00 0.00 46.59 2.08
1847 2415 4.286291 TGACATCCTAGCTCTACTCGGATA 59.714 45.833 0.00 0.00 46.59 2.59
1849 2417 2.438392 TGACATCCTAGCTCTACTCGGA 59.562 50.000 0.00 0.00 43.93 4.55
1850 2418 2.852449 TGACATCCTAGCTCTACTCGG 58.148 52.381 0.00 0.00 32.34 4.63
1851 2419 3.818210 ACATGACATCCTAGCTCTACTCG 59.182 47.826 0.00 0.00 0.00 4.18
1852 2420 4.217550 GGACATGACATCCTAGCTCTACTC 59.782 50.000 0.00 0.00 33.03 2.59
1853 2421 4.148838 GGACATGACATCCTAGCTCTACT 58.851 47.826 0.00 0.00 33.03 2.57
1854 2422 3.057876 CGGACATGACATCCTAGCTCTAC 60.058 52.174 0.00 0.00 33.70 2.59
1855 2423 3.149981 CGGACATGACATCCTAGCTCTA 58.850 50.000 0.00 0.00 33.70 2.43
1856 2424 1.959985 CGGACATGACATCCTAGCTCT 59.040 52.381 0.00 0.00 33.70 4.09
1857 2425 1.683917 ACGGACATGACATCCTAGCTC 59.316 52.381 0.00 0.00 33.70 4.09
1858 2426 1.410517 CACGGACATGACATCCTAGCT 59.589 52.381 0.00 0.00 33.70 3.32
1859 2427 1.137086 ACACGGACATGACATCCTAGC 59.863 52.381 0.00 0.00 33.70 3.42
1860 2428 3.548214 CGTACACGGACATGACATCCTAG 60.548 52.174 0.00 0.00 33.70 3.02
1861 2429 2.356695 CGTACACGGACATGACATCCTA 59.643 50.000 0.00 0.00 33.70 2.94
1862 2430 1.134367 CGTACACGGACATGACATCCT 59.866 52.381 0.00 0.00 33.70 3.24
1863 2431 1.135199 ACGTACACGGACATGACATCC 60.135 52.381 0.00 0.00 44.95 3.51
1864 2432 1.917955 CACGTACACGGACATGACATC 59.082 52.381 0.00 0.00 44.95 3.06
1865 2433 1.271379 ACACGTACACGGACATGACAT 59.729 47.619 0.00 0.00 44.95 3.06
1866 2434 0.669619 ACACGTACACGGACATGACA 59.330 50.000 0.00 0.00 44.95 3.58
1867 2435 1.334054 GACACGTACACGGACATGAC 58.666 55.000 0.00 0.00 44.95 3.06
1868 2436 0.110101 CGACACGTACACGGACATGA 60.110 55.000 0.00 0.00 44.95 3.07
1869 2437 0.386352 ACGACACGTACACGGACATG 60.386 55.000 6.72 0.00 44.95 3.21
1870 2438 0.386352 CACGACACGTACACGGACAT 60.386 55.000 6.72 0.00 44.95 3.06
1871 2439 1.009788 CACGACACGTACACGGACA 60.010 57.895 6.72 0.00 44.95 4.02
1872 2440 0.592247 AACACGACACGTACACGGAC 60.592 55.000 6.72 0.00 44.95 4.79
1873 2441 0.940833 TAACACGACACGTACACGGA 59.059 50.000 6.72 0.00 44.95 4.69
1874 2442 1.321016 CTAACACGACACGTACACGG 58.679 55.000 6.72 0.00 44.95 4.94
1875 2443 1.321016 CCTAACACGACACGTACACG 58.679 55.000 0.00 0.00 38.32 4.49
1876 2444 2.405892 ACCTAACACGACACGTACAC 57.594 50.000 0.00 0.00 38.32 2.90
1877 2445 4.475028 CATAACCTAACACGACACGTACA 58.525 43.478 0.00 0.00 38.32 2.90
1878 2446 3.853671 CCATAACCTAACACGACACGTAC 59.146 47.826 0.00 0.00 38.32 3.67
1879 2447 3.505680 ACCATAACCTAACACGACACGTA 59.494 43.478 0.00 0.00 38.32 3.57
1880 2448 2.297033 ACCATAACCTAACACGACACGT 59.703 45.455 0.00 0.00 42.36 4.49
1881 2449 2.664568 CACCATAACCTAACACGACACG 59.335 50.000 0.00 0.00 0.00 4.49
1882 2450 2.997986 CCACCATAACCTAACACGACAC 59.002 50.000 0.00 0.00 0.00 3.67
1883 2451 2.898612 TCCACCATAACCTAACACGACA 59.101 45.455 0.00 0.00 0.00 4.35
1884 2452 3.056322 ACTCCACCATAACCTAACACGAC 60.056 47.826 0.00 0.00 0.00 4.34
1885 2453 3.167485 ACTCCACCATAACCTAACACGA 58.833 45.455 0.00 0.00 0.00 4.35
1886 2454 3.518590 GACTCCACCATAACCTAACACG 58.481 50.000 0.00 0.00 0.00 4.49
1887 2455 3.518590 CGACTCCACCATAACCTAACAC 58.481 50.000 0.00 0.00 0.00 3.32
1888 2456 2.498481 CCGACTCCACCATAACCTAACA 59.502 50.000 0.00 0.00 0.00 2.41
1889 2457 2.740904 GCCGACTCCACCATAACCTAAC 60.741 54.545 0.00 0.00 0.00 2.34
1890 2458 1.483415 GCCGACTCCACCATAACCTAA 59.517 52.381 0.00 0.00 0.00 2.69
1891 2459 1.117150 GCCGACTCCACCATAACCTA 58.883 55.000 0.00 0.00 0.00 3.08
1892 2460 0.617820 AGCCGACTCCACCATAACCT 60.618 55.000 0.00 0.00 0.00 3.50
1893 2461 1.117150 TAGCCGACTCCACCATAACC 58.883 55.000 0.00 0.00 0.00 2.85
1894 2462 1.535437 CGTAGCCGACTCCACCATAAC 60.535 57.143 0.00 0.00 35.63 1.89
1895 2463 0.742505 CGTAGCCGACTCCACCATAA 59.257 55.000 0.00 0.00 35.63 1.90
1896 2464 2.411535 CGTAGCCGACTCCACCATA 58.588 57.895 0.00 0.00 35.63 2.74
1897 2465 3.207354 CGTAGCCGACTCCACCAT 58.793 61.111 0.00 0.00 35.63 3.55
1910 2478 0.874607 GTCCTAACCATGGCGCGTAG 60.875 60.000 13.04 8.40 0.00 3.51
1911 2479 1.142314 GTCCTAACCATGGCGCGTA 59.858 57.895 13.04 0.00 0.00 4.42
1912 2480 2.125269 GTCCTAACCATGGCGCGT 60.125 61.111 13.04 0.00 0.00 6.01
1913 2481 2.895372 GGTCCTAACCATGGCGCG 60.895 66.667 13.04 0.00 45.68 6.86
1914 2482 2.660258 ATCGGTCCTAACCATGGCGC 62.660 60.000 13.04 0.00 46.86 6.53
1915 2483 0.677288 TATCGGTCCTAACCATGGCG 59.323 55.000 13.04 5.41 46.86 5.69
1916 2484 2.550208 CCTTATCGGTCCTAACCATGGC 60.550 54.545 13.04 0.00 46.86 4.40
1917 2485 2.038557 CCCTTATCGGTCCTAACCATGG 59.961 54.545 11.19 11.19 46.86 3.66
1918 2486 2.704065 ACCCTTATCGGTCCTAACCATG 59.296 50.000 0.00 0.00 46.86 3.66
1919 2487 3.056201 ACCCTTATCGGTCCTAACCAT 57.944 47.619 0.00 0.00 46.86 3.55
1920 2488 2.502538 CAACCCTTATCGGTCCTAACCA 59.497 50.000 0.00 0.00 46.86 3.67
1921 2489 2.744166 GCAACCCTTATCGGTCCTAACC 60.744 54.545 0.00 0.00 42.66 2.85
1922 2490 2.558378 GCAACCCTTATCGGTCCTAAC 58.442 52.381 0.00 0.00 33.98 2.34
1923 2491 1.137479 CGCAACCCTTATCGGTCCTAA 59.863 52.381 0.00 0.00 33.98 2.69
1924 2492 0.748450 CGCAACCCTTATCGGTCCTA 59.252 55.000 0.00 0.00 33.98 2.94
1925 2493 1.262640 ACGCAACCCTTATCGGTCCT 61.263 55.000 0.00 0.00 33.98 3.85
1926 2494 1.087771 CACGCAACCCTTATCGGTCC 61.088 60.000 0.00 0.00 33.98 4.46
1927 2495 0.108520 TCACGCAACCCTTATCGGTC 60.109 55.000 0.00 0.00 33.98 4.79
1928 2496 0.108329 CTCACGCAACCCTTATCGGT 60.108 55.000 0.00 0.00 37.93 4.69
1929 2497 0.108329 ACTCACGCAACCCTTATCGG 60.108 55.000 0.00 0.00 0.00 4.18
1930 2498 1.722011 AACTCACGCAACCCTTATCG 58.278 50.000 0.00 0.00 0.00 2.92
1931 2499 3.252458 ACAAAACTCACGCAACCCTTATC 59.748 43.478 0.00 0.00 0.00 1.75
1932 2500 3.219281 ACAAAACTCACGCAACCCTTAT 58.781 40.909 0.00 0.00 0.00 1.73
1933 2501 2.645802 ACAAAACTCACGCAACCCTTA 58.354 42.857 0.00 0.00 0.00 2.69
1934 2502 1.470051 ACAAAACTCACGCAACCCTT 58.530 45.000 0.00 0.00 0.00 3.95
1935 2503 2.335316 TACAAAACTCACGCAACCCT 57.665 45.000 0.00 0.00 0.00 4.34
1936 2504 2.097791 TGTTACAAAACTCACGCAACCC 59.902 45.455 0.00 0.00 36.51 4.11
1937 2505 3.103007 GTGTTACAAAACTCACGCAACC 58.897 45.455 0.00 0.00 36.51 3.77
1984 2553 5.303333 TCGTGCCCTTTTTCCTCTTTATTTT 59.697 36.000 0.00 0.00 0.00 1.82
1998 2567 4.515404 GCTCGTATCGTGCCCTTT 57.485 55.556 5.14 0.00 39.88 3.11
2004 2576 0.456221 AGTCAAGGGCTCGTATCGTG 59.544 55.000 0.00 0.00 0.00 4.35
2009 2581 5.353394 AAATTGATAGTCAAGGGCTCGTA 57.647 39.130 0.00 0.00 40.05 3.43
2013 2585 5.539955 ACACAAAAATTGATAGTCAAGGGCT 59.460 36.000 0.00 0.00 40.05 5.19
2014 2586 5.634859 CACACAAAAATTGATAGTCAAGGGC 59.365 40.000 0.00 0.00 40.05 5.19
2021 2598 3.233578 CGCGCACACAAAAATTGATAGT 58.766 40.909 8.75 0.00 0.00 2.12
2037 2615 2.476873 AATTACACAAACAACGCGCA 57.523 40.000 5.73 0.00 0.00 6.09
2041 2619 7.408185 CGATCACATCAAATTACACAAACAACG 60.408 37.037 0.00 0.00 0.00 4.10
2045 2623 6.523201 GGTCGATCACATCAAATTACACAAAC 59.477 38.462 0.00 0.00 0.00 2.93
2048 2626 4.634004 GGGTCGATCACATCAAATTACACA 59.366 41.667 0.00 0.00 0.00 3.72
2051 2629 4.876107 ACAGGGTCGATCACATCAAATTAC 59.124 41.667 0.00 0.00 0.00 1.89
2053 2631 3.691118 CACAGGGTCGATCACATCAAATT 59.309 43.478 0.00 0.00 0.00 1.82
2058 2636 0.179073 CCCACAGGGTCGATCACATC 60.179 60.000 0.00 0.00 38.25 3.06
2084 2663 5.337571 CCTTGCTCTAGATACCAGTTGTTGA 60.338 44.000 0.00 0.00 0.00 3.18
2091 2670 3.632604 TCGAACCTTGCTCTAGATACCAG 59.367 47.826 0.00 0.00 0.00 4.00
2178 2757 2.389059 CTCCTCATCGTCGCTACAATG 58.611 52.381 0.00 0.00 0.00 2.82
2179 2758 1.269309 GCTCCTCATCGTCGCTACAAT 60.269 52.381 0.00 0.00 0.00 2.71
2192 2775 1.264749 ACTGTATTGCCCGCTCCTCA 61.265 55.000 0.00 0.00 0.00 3.86
2253 2836 4.969196 CACGTCGCTGCACCACCT 62.969 66.667 0.00 0.00 0.00 4.00
2259 2842 3.932580 GATCACCCACGTCGCTGCA 62.933 63.158 0.00 0.00 0.00 4.41
2263 2879 2.579787 CTCGATCACCCACGTCGC 60.580 66.667 0.00 0.00 35.48 5.19
2272 2888 1.007336 AACGACAACCGCTCGATCAC 61.007 55.000 0.00 0.00 43.32 3.06
2273 2889 0.731514 GAACGACAACCGCTCGATCA 60.732 55.000 0.00 0.00 43.32 2.92
2317 2933 0.530744 CCGTCAACGATCTCCTTCCA 59.469 55.000 3.71 0.00 43.02 3.53
2319 2935 0.815734 TCCCGTCAACGATCTCCTTC 59.184 55.000 3.71 0.00 43.02 3.46
2320 2936 0.818296 CTCCCGTCAACGATCTCCTT 59.182 55.000 3.71 0.00 43.02 3.36
2321 2937 1.668101 GCTCCCGTCAACGATCTCCT 61.668 60.000 3.71 0.00 43.02 3.69
2322 2938 1.227002 GCTCCCGTCAACGATCTCC 60.227 63.158 3.71 0.00 43.02 3.71
2323 2939 1.586564 CGCTCCCGTCAACGATCTC 60.587 63.158 3.71 0.00 43.02 2.75
2324 2940 2.490217 CGCTCCCGTCAACGATCT 59.510 61.111 3.71 0.00 43.02 2.75
2325 2941 2.582498 CCGCTCCCGTCAACGATC 60.582 66.667 3.71 0.00 43.02 3.69
2326 2942 2.939261 AACCGCTCCCGTCAACGAT 61.939 57.895 3.71 0.00 43.02 3.73
2327 2943 3.608662 AACCGCTCCCGTCAACGA 61.609 61.111 3.71 0.00 43.02 3.85
2328 2944 3.411351 CAACCGCTCCCGTCAACG 61.411 66.667 0.00 0.00 39.44 4.10
2344 3010 2.034048 TAACACTGCACCTCGGCACA 62.034 55.000 0.00 0.00 39.25 4.57
2372 3038 0.109458 CCCGAACGACGATCTTGACA 60.109 55.000 0.00 0.00 45.77 3.58
2397 3063 1.003355 CTTTGCCGCCTCTTCCTCA 60.003 57.895 0.00 0.00 0.00 3.86
2482 3148 2.969990 TCTCAACTGCAGCAGAAGATC 58.030 47.619 29.70 0.00 35.18 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.