AutoCloner

Multiple sequence alignment - TraesCS5A01G294100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G294100	chr5A	100.000	2549	0	0	1	2549	503397943	503400491	0.000000e+00	4708.0
1	TraesCS5A01G294100	chr5A	84.889	675	56	17	289	947	503268063	503268707	7.690000e-180	640.0
2	TraesCS5A01G294100	chr5A	76.431	1328	226	55	253	1549	503438860	503440131	2.770000e-179	638.0
3	TraesCS5A01G294100	chr5A	75.904	1411	224	66	288	1657	503485197	503486532	1.300000e-172	616.0
4	TraesCS5A01G294100	chr5D	90.687	1761	127	16	633	2379	398331039	398332776	0.000000e+00	2309.0
5	TraesCS5A01G294100	chr5D	83.333	1512	180	31	208	1692	398245073	398246539	0.000000e+00	1330.0
6	TraesCS5A01G294100	chr5D	90.065	614	44	8	1	613	398324260	398324857	0.000000e+00	780.0
7	TraesCS5A01G294100	chr5D	75.261	1055	192	44	667	1694	398482775	398483787	3.010000e-119	438.0
8	TraesCS5A01G294100	chr5D	84.698	281	36	5	2265	2544	398247830	398248104	8.980000e-70	274.0
9	TraesCS5A01G294100	chr5D	91.429	140	11	1	2411	2549	398357260	398357399	9.310000e-45	191.0
10	TraesCS5A01G294100	chr5D	87.879	132	16	0	1878	2009	398247706	398247837	3.400000e-34	156.0
11	TraesCS5A01G294100	chr5D	76.496	234	25	15	2043	2264	481970948	481971163	1.610000e-17	100.0
12	TraesCS5A01G294100	chr5B	90.879	1513	108	22	1	1508	478335072	478336559	0.000000e+00	2002.0
13	TraesCS5A01G294100	chr5B	86.372	1064	94	14	1503	2549	478360484	478361513	0.000000e+00	1114.0
14	TraesCS5A01G294100	chr5B	75.177	1410	227	66	288	1657	478425230	478426556	3.710000e-153	551.0
15	TraesCS5A01G294100	chr5B	75.081	1232	225	46	452	1657	478404406	478405581	1.360000e-137	499.0
16	TraesCS5A01G294100	chr5B	83.750	160	17	3	2265	2423	478374097	478374248	2.640000e-30	143.0
17	TraesCS5A01G294100	chr1D	78.626	262	43	8	2019	2268	33418537	33418277	7.300000e-36	161.0
18	TraesCS5A01G294100	chr7A	76.515	264	47	10	2015	2264	693010921	693011183	2.060000e-26	130.0
19	TraesCS5A01G294100	chr6B	100.000	32	0	0	2233	2264	35645424	35645455	2.740000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G294100	chr5A	503397943	503400491	2548	False	4708.000000	4708	100.000000	1	2549	1	chr5A.!!$F2	2548
1	TraesCS5A01G294100	chr5A	503268063	503268707	644	False	640.000000	640	84.889000	289	947	1	chr5A.!!$F1	658
2	TraesCS5A01G294100	chr5A	503438860	503440131	1271	False	638.000000	638	76.431000	253	1549	1	chr5A.!!$F3	1296
3	TraesCS5A01G294100	chr5A	503485197	503486532	1335	False	616.000000	616	75.904000	288	1657	1	chr5A.!!$F4	1369
4	TraesCS5A01G294100	chr5D	398331039	398332776	1737	False	2309.000000	2309	90.687000	633	2379	1	chr5D.!!$F2	1746
5	TraesCS5A01G294100	chr5D	398324260	398324857	597	False	780.000000	780	90.065000	1	613	1	chr5D.!!$F1	612
6	TraesCS5A01G294100	chr5D	398245073	398248104	3031	False	586.666667	1330	85.303333	208	2544	3	chr5D.!!$F6	2336
7	TraesCS5A01G294100	chr5D	398482775	398483787	1012	False	438.000000	438	75.261000	667	1694	1	chr5D.!!$F4	1027
8	TraesCS5A01G294100	chr5B	478335072	478336559	1487	False	2002.000000	2002	90.879000	1	1508	1	chr5B.!!$F1	1507
9	TraesCS5A01G294100	chr5B	478360484	478361513	1029	False	1114.000000	1114	86.372000	1503	2549	1	chr5B.!!$F2	1046
10	TraesCS5A01G294100	chr5B	478425230	478426556	1326	False	551.000000	551	75.177000	288	1657	1	chr5B.!!$F5	1369
11	TraesCS5A01G294100	chr5B	478404406	478405581	1175	False	499.000000	499	75.081000	452	1657	1	chr5B.!!$F4	1205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
607	664	0.106519	CCTAGCCCTGGGACAAATGG	60.107	60.0	19.27	5.12	38.7	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1552	1657	0.038166	TCCATGTGGAAGCTTGACCC	59.962	55.0	2.1	0.0	42.18	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	1.617804	CCTGCCAACCATCACCATTCT	60.618	52.381	0.00	0.00	0.00	2.40
64	65	6.312399	CACTCAAAGGTGCACAAAAGTATA	57.688	37.500	20.43	0.00	0.00	1.47
70	71	4.448210	AGGTGCACAAAAGTATATACCCG	58.552	43.478	20.43	0.00	0.00	5.28
186	187	4.290093	TCATCTGAAGTACATAGCACCCT	58.710	43.478	0.00	0.00	0.00	4.34
221	222	7.881775	AAAGTTACATCAAGGTCTTCAACTT	57.118	32.000	0.00	0.00	36.75	2.66
235	236	3.921119	TCAACTTCATGATGGTGTTGC	57.079	42.857	22.07	0.00	38.19	4.17
284	293	7.410120	AAAAGAATGGAAGCTCCGATTTATT	57.590	32.000	0.00	0.00	40.17	1.40
285	294	6.382869	AAGAATGGAAGCTCCGATTTATTG	57.617	37.500	0.00	0.00	40.17	1.90
298	315	3.433615	CGATTTATTGGGGAGATCGCTTC	59.566	47.826	0.00	0.00	34.11	3.86
299	316	4.646572	GATTTATTGGGGAGATCGCTTCT	58.353	43.478	0.00	0.00	37.41	2.85
300	317	5.566826	CGATTTATTGGGGAGATCGCTTCTA	60.567	44.000	0.00	0.00	33.74	2.10
327	344	0.454600	GTACGGGTTGATGAGCGAGA	59.545	55.000	0.00	0.00	0.00	4.04
348	374	2.345124	GCAAAGAGCATGGAGGAGAT	57.655	50.000	0.00	0.00	44.79	2.75
418	445	6.037281	GGAAAGAAGAAGAAAAACAGAGACGT	59.963	38.462	0.00	0.00	0.00	4.34
419	446	7.224167	GGAAAGAAGAAGAAAAACAGAGACGTA	59.776	37.037	0.00	0.00	0.00	3.57
470	503	4.033776	CACATGGTGGGCCGGAGT	62.034	66.667	5.05	0.00	37.67	3.85
569	626	4.424842	TGATTAAAGGCAATTTGGGACCT	58.575	39.130	0.00	0.00	32.01	3.85
603	660	1.213296	GAATCCTAGCCCTGGGACAA	58.787	55.000	19.27	0.00	43.20	3.18
607	664	0.106519	CCTAGCCCTGGGACAAATGG	60.107	60.000	19.27	5.12	38.70	3.16
661	718	2.300956	TTGGCCATAAGTTCCTTGCA	57.699	45.000	6.09	0.00	0.00	4.08
695	752	5.874810	TGTCAACATTCTTATAGTGCTCACC	59.125	40.000	0.00	0.00	0.00	4.02
699	756	4.413520	ACATTCTTATAGTGCTCACCCCAT	59.586	41.667	0.00	0.00	0.00	4.00
710	769	3.953612	TGCTCACCCCATATGTCAAATTC	59.046	43.478	1.24	0.00	0.00	2.17
716	775	6.035843	CACCCCATATGTCAAATTCTTTTCG	58.964	40.000	1.24	0.00	0.00	3.46
721	780	6.589523	CCATATGTCAAATTCTTTTCGCCAAA	59.410	34.615	1.24	0.00	0.00	3.28
875	943	2.159282	GCATCAGAACAAAGCCCATGAG	60.159	50.000	0.00	0.00	0.00	2.90
982	1075	2.229675	TCATAAGCACCTGATCAGCG	57.770	50.000	17.76	12.75	0.00	5.18
1211	1316	1.135257	CGGCACAATCGAGAAGAGACT	60.135	52.381	0.00	0.00	0.00	3.24
1241	1346	2.594592	GGGCGGTGACTTTGCAGT	60.595	61.111	0.00	0.00	35.17	4.40
1335	1440	1.137086	CATCCCCTCTTCAACGACGAT	59.863	52.381	0.00	0.00	0.00	3.73
1382	1487	0.520404	GATGATGATGCGGATGTGCC	59.480	55.000	0.00	0.00	0.00	5.01
1391	1496	1.078214	CGGATGTGCCACTGGATGT	60.078	57.895	0.00	0.00	35.94	3.06
1421	1526	1.474478	AGACGACGATGATGAGCTGTT	59.526	47.619	0.00	0.00	0.00	3.16
1432	1537	1.951209	TGAGCTGTTGGTCCTGGATA	58.049	50.000	0.00	0.00	39.75	2.59
1549	1654	2.805099	CGGCTGAAGAATGGATTCTAGC	59.195	50.000	12.77	12.77	45.83	3.42
1550	1655	3.494048	CGGCTGAAGAATGGATTCTAGCT	60.494	47.826	17.64	0.00	45.83	3.32
1551	1656	4.262207	CGGCTGAAGAATGGATTCTAGCTA	60.262	45.833	17.64	0.00	45.83	3.32
1552	1657	5.237048	GGCTGAAGAATGGATTCTAGCTAG	58.763	45.833	15.01	15.01	45.83	3.42
1557	1662	4.820775	AGAATGGATTCTAGCTAGGGTCA	58.179	43.478	20.58	13.54	44.80	4.02
1621	1730	0.536724	TCCCGAGTGTCCACATGATG	59.463	55.000	0.00	0.00	0.00	3.07
1744	1857	3.052745	TCTATAGCATTTGAAGCGAGCG	58.947	45.455	0.00	0.00	37.01	5.03
1747	1860	1.226491	GCATTTGAAGCGAGCGCAT	60.226	52.632	17.68	4.74	44.88	4.73
1753	1866	1.080435	TGAAGCGAGCGCATCTTCTG	61.080	55.000	25.54	8.89	44.88	3.02
1785	1898	0.663153	GGCGGCACCAATCTTGATAC	59.337	55.000	3.07	0.00	38.86	2.24
1793	1906	6.650807	CGGCACCAATCTTGATACTTGTATAT	59.349	38.462	0.00	0.00	0.00	0.86
1837	2638	1.382692	GCGTTCGCTCCCTACTACCT	61.383	60.000	9.99	0.00	0.00	3.08
1856	2657	3.337889	GCACGCGAACACTGCTCA	61.338	61.111	15.93	0.00	0.00	4.26
1866	2667	4.237724	CGAACACTGCTCATTCTTAGTCA	58.762	43.478	0.00	0.00	0.00	3.41
1869	2670	5.220710	ACACTGCTCATTCTTAGTCAAGT	57.779	39.130	0.00	0.00	33.20	3.16
1913	3040	0.539051	AGTCATCAGCTGCTACCACC	59.461	55.000	9.47	0.00	0.00	4.61
1930	3057	8.764558	TGCTACCACCTAATTAAAAGAGATACA	58.235	33.333	0.00	0.00	0.00	2.29
1931	3058	9.609346	GCTACCACCTAATTAAAAGAGATACAA	57.391	33.333	0.00	0.00	0.00	2.41
2009	3136	4.515567	CGCCTAAATGGAATACTTTCTCCC	59.484	45.833	0.00	0.00	38.35	4.30
2096	3225	6.486993	GTCCGAAATATTCTTAGCCCTGAAAT	59.513	38.462	0.00	0.00	0.00	2.17
2097	3226	7.013369	GTCCGAAATATTCTTAGCCCTGAAATT	59.987	37.037	0.00	0.00	0.00	1.82
2107	3236	4.773323	AGCCCTGAAATTTTTCGAGAAG	57.227	40.909	0.00	0.00	40.01	2.85
2176	3305	9.898152	AAGTGAAATTTGAAACCTTAAAATCCA	57.102	25.926	0.00	0.00	0.00	3.41
2231	3360	5.351948	TTCACATATTTCGATGAGGTCCA	57.648	39.130	0.00	0.00	0.00	4.02
2274	3403	6.332735	ACTAAAAACCTTGCTTTCTCCATC	57.667	37.500	0.00	0.00	0.00	3.51
2280	3409	4.670765	ACCTTGCTTTCTCCATCTCAAAT	58.329	39.130	0.00	0.00	0.00	2.32
2281	3410	5.082425	ACCTTGCTTTCTCCATCTCAAATT	58.918	37.500	0.00	0.00	0.00	1.82
2284	3413	3.691118	TGCTTTCTCCATCTCAAATTCCG	59.309	43.478	0.00	0.00	0.00	4.30
2285	3414	3.691609	GCTTTCTCCATCTCAAATTCCGT	59.308	43.478	0.00	0.00	0.00	4.69
2314	3444	4.399303	GCTTTTCCTGCCTCTTTAGCATTA	59.601	41.667	0.00	0.00	40.04	1.90
2315	3445	5.105756	GCTTTTCCTGCCTCTTTAGCATTAA	60.106	40.000	0.00	0.00	40.04	1.40
2334	3464	6.654582	GCATTAATTTCCACTCCCAACATTTT	59.345	34.615	0.00	0.00	0.00	1.82
2336	3466	8.505625	CATTAATTTCCACTCCCAACATTTTTG	58.494	33.333	0.00	0.00	0.00	2.44
2399	3529	8.516234	TCTATAGATCTTCCTTTCGTATGCTTC	58.484	37.037	0.00	0.00	0.00	3.86
2427	3557	1.202879	AGTTTCCTTTCACATGGCCGA	60.203	47.619	0.00	0.00	0.00	5.54
2450	3580	1.153881	GTTGGTACCTCGTCTCGGC	60.154	63.158	14.36	0.00	0.00	5.54
2452	3582	3.885521	GGTACCTCGTCTCGGCCG	61.886	72.222	22.12	22.12	0.00	6.13
2453	3583	3.885521	GTACCTCGTCTCGGCCGG	61.886	72.222	27.83	16.54	0.00	6.13
2454	3584	4.100084	TACCTCGTCTCGGCCGGA	62.100	66.667	27.83	18.80	0.00	5.14
2482	3620	1.306654	TACGGCAGTCCCCCAAGAT	60.307	57.895	0.00	0.00	0.00	2.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	2.511600	GCGTTGAGCTGCGGGTAT	60.512	61.111	0.00	0.00	44.04	2.73
208	209	4.763793	CACCATCATGAAGTTGAAGACCTT	59.236	41.667	0.00	0.00	0.00	3.50
221	222	2.183478	AAGTCGCAACACCATCATGA	57.817	45.000	0.00	0.00	0.00	3.07
235	236	4.686091	TCATGCAGTAGAACTCAAAAGTCG	59.314	41.667	0.00	0.00	33.48	4.18
264	269	4.022849	CCCAATAAATCGGAGCTTCCATTC	60.023	45.833	0.00	0.00	35.91	2.67
284	293	2.175069	AGTAGTAGAAGCGATCTCCCCA	59.825	50.000	0.00	0.00	39.71	4.96
285	294	2.866351	AGTAGTAGAAGCGATCTCCCC	58.134	52.381	0.00	0.00	39.71	4.81
298	315	5.957798	TCATCAACCCGTACAAAGTAGTAG	58.042	41.667	0.00	0.00	0.00	2.57
299	316	5.622914	GCTCATCAACCCGTACAAAGTAGTA	60.623	44.000	0.00	0.00	0.00	1.82
300	317	4.817517	CTCATCAACCCGTACAAAGTAGT	58.182	43.478	0.00	0.00	0.00	2.73
327	344	1.632409	TCTCCTCCATGCTCTTTGCTT	59.368	47.619	0.00	0.00	43.37	3.91
348	374	3.244181	TGTGAGATCTGTGTAGCTTTGCA	60.244	43.478	0.00	0.00	0.00	4.08
418	445	3.671008	TTCCAAAAGTCGCAGCTAGTA	57.329	42.857	0.00	0.00	0.00	1.82
419	446	2.543777	TTCCAAAAGTCGCAGCTAGT	57.456	45.000	0.00	0.00	0.00	2.57
470	503	2.742372	GCAGCTTTCCTCGGCGAA	60.742	61.111	12.13	0.00	0.00	4.70
518	555	3.920231	AGCTCATGAGATGGCTTAACA	57.080	42.857	27.04	0.00	34.56	2.41
569	626	2.159382	GGATTCGCTCTTTTGGGTTGA	58.841	47.619	0.00	0.00	0.00	3.18
607	664	6.454795	TCAATTTAAATGAGGTCACAAAGGC	58.545	36.000	0.39	0.00	0.00	4.35
695	752	5.043248	GGCGAAAAGAATTTGACATATGGG	58.957	41.667	7.80	0.00	39.02	4.00
699	756	9.868277	ATATTTTGGCGAAAAGAATTTGACATA	57.132	25.926	12.28	0.00	39.02	2.29
710	769	4.736793	CAGCTAGCATATTTTGGCGAAAAG	59.263	41.667	18.83	0.65	34.53	2.27
875	943	1.805345	TCCAGAGACGAGAGAAACGAC	59.195	52.381	0.00	0.00	34.70	4.34
982	1075	3.332919	TCATCTTTGTTGCTGAGAGCTC	58.667	45.455	5.27	5.27	42.97	4.09
1105	1210	3.171388	GACCATGGGGCCCGAGAT	61.171	66.667	19.83	4.50	37.90	2.75
1106	1211	4.414956	AGACCATGGGGCCCGAGA	62.415	66.667	19.83	1.66	37.90	4.04
1190	1295	0.888619	TCTCTTCTCGATTGTGCCGT	59.111	50.000	0.00	0.00	0.00	5.68
1211	1316	2.125326	CCGCCCTGGACGATGACTA	61.125	63.158	3.24	0.00	42.00	2.59
1241	1346	4.774200	TCTCCAACTGATGAGACTGATTGA	59.226	41.667	0.00	0.00	0.00	2.57
1247	1352	4.323333	CCAACATCTCCAACTGATGAGACT	60.323	45.833	10.21	0.00	42.68	3.24
1335	1440	3.809279	CACTGTAACAGCAGTTGACATGA	59.191	43.478	4.52	0.00	46.45	3.07
1391	1496	0.170339	ATCGTCGTCTTGATCGCACA	59.830	50.000	0.00	0.00	0.00	4.57
1432	1537	2.967201	CCTCTCTCTTGCTCCTGATCAT	59.033	50.000	0.00	0.00	0.00	2.45
1536	1641	5.546526	CTTGACCCTAGCTAGAATCCATTC	58.453	45.833	22.70	7.57	37.06	2.67
1549	1654	2.636830	CATGTGGAAGCTTGACCCTAG	58.363	52.381	2.10	0.00	0.00	3.02
1550	1655	1.281867	CCATGTGGAAGCTTGACCCTA	59.718	52.381	2.10	0.00	37.39	3.53
1551	1656	0.038744	CCATGTGGAAGCTTGACCCT	59.961	55.000	2.10	0.00	37.39	4.34
1552	1657	0.038166	TCCATGTGGAAGCTTGACCC	59.962	55.000	2.10	0.00	42.18	4.46
1621	1730	9.503427	CTCGTATTGATTCCTACAAAAATTTCC	57.497	33.333	0.00	0.00	0.00	3.13
1635	1744	5.903810	ACCAACTCCTACTCGTATTGATTC	58.096	41.667	0.00	0.00	0.00	2.52
1744	1857	2.650813	ATCCGACGGCCAGAAGATGC	62.651	60.000	9.66	0.00	0.00	3.91
1747	1860	1.982395	ACATCCGACGGCCAGAAGA	60.982	57.895	9.66	0.00	0.00	2.87
1785	1898	3.469008	TTGTGAGGGGCGATATACAAG	57.531	47.619	0.00	0.00	0.00	3.16
1793	1906	0.605319	GTGTGATTTGTGAGGGGCGA	60.605	55.000	0.00	0.00	0.00	5.54
1849	2650	5.474578	TCACTTGACTAAGAATGAGCAGT	57.525	39.130	0.00	0.00	37.36	4.40
1851	2652	6.205464	CCTTTTCACTTGACTAAGAATGAGCA	59.795	38.462	0.00	0.00	37.36	4.26
1856	2657	8.519799	TGTTTCCTTTTCACTTGACTAAGAAT	57.480	30.769	0.00	0.00	37.36	2.40
1930	3057	5.595952	GGCTCTGTATGATCCCAAATTTCTT	59.404	40.000	0.00	0.00	0.00	2.52
1931	3058	5.136105	GGCTCTGTATGATCCCAAATTTCT	58.864	41.667	0.00	0.00	0.00	2.52
1938	3065	3.321039	AGATTGGCTCTGTATGATCCCA	58.679	45.455	0.00	0.00	31.12	4.37
2052	3179	4.258543	GGACCCGACTGAAATATGTGAAA	58.741	43.478	0.00	0.00	0.00	2.69
2083	3212	5.880054	TCTCGAAAAATTTCAGGGCTAAG	57.120	39.130	6.69	0.00	37.01	2.18
2087	3216	3.506067	TCCTTCTCGAAAAATTTCAGGGC	59.494	43.478	6.69	0.00	37.01	5.19
2187	3316	9.612620	GTGAAATTTCAGAATTCACGTATTTCT	57.387	29.630	21.05	7.50	37.98	2.52
2211	3340	6.435430	TTTTGGACCTCATCGAAATATGTG	57.565	37.500	0.00	0.00	35.26	3.21
2212	3341	7.645058	AATTTTGGACCTCATCGAAATATGT	57.355	32.000	0.00	0.00	35.26	2.29
2274	3403	4.425577	AAAGCTAGCAACGGAATTTGAG	57.574	40.909	18.83	0.00	0.00	3.02
2280	3409	2.151202	CAGGAAAAGCTAGCAACGGAA	58.849	47.619	18.83	0.00	0.00	4.30
2281	3410	1.808411	CAGGAAAAGCTAGCAACGGA	58.192	50.000	18.83	0.00	0.00	4.69
2284	3413	1.470494	GAGGCAGGAAAAGCTAGCAAC	59.530	52.381	18.83	4.77	0.00	4.17
2285	3414	1.352352	AGAGGCAGGAAAAGCTAGCAA	59.648	47.619	18.83	0.00	0.00	3.91
2314	3444	6.000246	ACAAAAATGTTGGGAGTGGAAATT	58.000	33.333	0.00	0.00	0.00	1.82
2315	3445	5.628797	ACAAAAATGTTGGGAGTGGAAAT	57.371	34.783	0.00	0.00	0.00	2.17
2334	3464	4.041075	TGGATTGTGGAGTTAGCACTACAA	59.959	41.667	8.13	8.13	46.19	2.41
2336	3466	3.933332	GTGGATTGTGGAGTTAGCACTAC	59.067	47.826	0.00	0.00	33.80	2.73
2450	3580	2.028190	CGTAGGCTCAGCATCCGG	59.972	66.667	0.00	0.00	0.00	5.14
2475	3613	2.591715	CGGCGGCCTTATCTTGGG	60.592	66.667	18.34	0.00	0.00	4.12
2495	3633	2.311854	ACTTCTCCATGGGCCTGGG	61.312	63.158	13.02	13.49	36.89	4.45
2504	3643	2.269023	TCATGGACACCACTTCTCCAT	58.731	47.619	0.00	0.00	44.25	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.