Multiple sequence alignment - TraesCS5A01G293800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G293800 chr5A 100.000 2483 0 0 1 2483 503256924 503259406 0.000000e+00 4586.0
1 TraesCS5A01G293800 chr5A 85.178 1012 109 24 720 1708 503396459 503397452 0.000000e+00 1000.0
2 TraesCS5A01G293800 chr5A 80.345 580 98 10 982 1551 503436705 503437278 2.280000e-115 425.0
3 TraesCS5A01G293800 chr5A 82.533 229 28 3 179 401 503387611 503387833 9.060000e-45 191.0
4 TraesCS5A01G293800 chr5A 88.194 144 8 6 577 716 503394493 503394631 1.980000e-36 163.0
5 TraesCS5A01G293800 chr5B 87.186 1116 106 22 644 1736 478331649 478332750 0.000000e+00 1234.0
6 TraesCS5A01G293800 chr5B 81.240 613 98 12 954 1558 478399375 478399978 1.730000e-131 479.0
7 TraesCS5A01G293800 chr5B 89.728 331 21 10 213 532 478331173 478331501 6.390000e-111 411.0
8 TraesCS5A01G293800 chr5B 77.535 641 117 20 926 1558 478414722 478415343 6.530000e-96 361.0
9 TraesCS5A01G293800 chr5B 95.918 49 2 0 530 578 478331526 478331574 2.050000e-11 80.5
10 TraesCS5A01G293800 chr5D 93.395 757 43 4 644 1393 398243085 398243841 0.000000e+00 1114.0
11 TraesCS5A01G293800 chr5D 84.483 696 59 21 180 850 398310831 398311502 2.080000e-180 641.0
12 TraesCS5A01G293800 chr5D 94.430 377 19 2 2109 2483 533167122 533166746 1.660000e-161 579.0
13 TraesCS5A01G293800 chr5D 94.195 379 20 2 2107 2483 389705784 389705406 5.950000e-161 577.0
14 TraesCS5A01G293800 chr5D 94.180 378 20 2 2107 2483 24190474 24190098 2.140000e-160 575.0
15 TraesCS5A01G293800 chr5D 86.481 540 42 16 9 532 398242529 398243053 4.640000e-157 564.0
16 TraesCS5A01G293800 chr5D 88.073 327 17 8 1447 1764 398243840 398244153 3.900000e-98 368.0
17 TraesCS5A01G293800 chr5D 91.353 266 16 4 1758 2017 398244300 398244564 8.440000e-95 357.0
18 TraesCS5A01G293800 chr5D 77.165 635 128 14 926 1551 398456126 398456752 1.090000e-93 353.0
19 TraesCS5A01G293800 chr3D 94.987 379 17 2 2107 2483 613486677 613486299 5.910000e-166 593.0
20 TraesCS5A01G293800 chr3D 94.723 379 18 2 2107 2483 594051457 594051835 2.750000e-164 588.0
21 TraesCS5A01G293800 chr6D 94.723 379 18 2 2107 2483 471336574 471336952 2.750000e-164 588.0
22 TraesCS5A01G293800 chr1D 94.723 379 18 2 2107 2483 10519119 10518741 2.750000e-164 588.0
23 TraesCS5A01G293800 chr7D 94.709 378 18 2 2107 2483 541416322 541416698 9.890000e-164 586.0
24 TraesCS5A01G293800 chr7D 94.459 379 19 2 2107 2483 385515836 385516214 1.280000e-162 582.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G293800 chr5A 503256924 503259406 2482 False 4586.000000 4586 100.0000 1 2483 1 chr5A.!!$F1 2482
1 TraesCS5A01G293800 chr5A 503394493 503397452 2959 False 581.500000 1000 86.6860 577 1708 2 chr5A.!!$F4 1131
2 TraesCS5A01G293800 chr5A 503436705 503437278 573 False 425.000000 425 80.3450 982 1551 1 chr5A.!!$F3 569
3 TraesCS5A01G293800 chr5B 478331173 478332750 1577 False 575.166667 1234 90.9440 213 1736 3 chr5B.!!$F3 1523
4 TraesCS5A01G293800 chr5B 478399375 478399978 603 False 479.000000 479 81.2400 954 1558 1 chr5B.!!$F1 604
5 TraesCS5A01G293800 chr5B 478414722 478415343 621 False 361.000000 361 77.5350 926 1558 1 chr5B.!!$F2 632
6 TraesCS5A01G293800 chr5D 398310831 398311502 671 False 641.000000 641 84.4830 180 850 1 chr5D.!!$F1 670
7 TraesCS5A01G293800 chr5D 398242529 398244564 2035 False 600.750000 1114 89.8255 9 2017 4 chr5D.!!$F3 2008
8 TraesCS5A01G293800 chr5D 398456126 398456752 626 False 353.000000 353 77.1650 926 1551 1 chr5D.!!$F2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 2827 0.037447 GGAGAGCTTCAACAAGGCCT 59.963 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 4058 0.03759 ACATTGAAGCCGGCTAACCA 59.962 50.0 33.07 24.31 34.57 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.612688 ACATTGAGGTATGGGTCCTATTGAT 59.387 40.000 0.00 0.00 35.20 2.57
72 73 3.832490 TGAGGTATGGGTCCTATTGATCG 59.168 47.826 0.00 0.00 35.20 3.69
88 89 4.729856 CGGACCGTCGAACCCACC 62.730 72.222 5.48 0.00 0.00 4.61
91 92 1.666872 GACCGTCGAACCCACCTTG 60.667 63.158 0.00 0.00 0.00 3.61
125 128 2.093816 TGTAGAGATGCTTCACTGCTGG 60.094 50.000 13.89 0.00 0.00 4.85
126 129 0.982704 AGAGATGCTTCACTGCTGGT 59.017 50.000 2.07 0.00 0.00 4.00
133 136 1.541147 GCTTCACTGCTGGTATGCAAA 59.459 47.619 0.00 0.00 42.83 3.68
161 164 6.434028 TGCAAGATATATACCTGATTTTGGGC 59.566 38.462 0.00 0.00 0.00 5.36
162 165 6.434028 GCAAGATATATACCTGATTTTGGGCA 59.566 38.462 0.00 0.00 0.00 5.36
163 166 7.039784 GCAAGATATATACCTGATTTTGGGCAA 60.040 37.037 0.00 0.00 0.00 4.52
164 167 9.028284 CAAGATATATACCTGATTTTGGGCAAT 57.972 33.333 0.00 0.00 0.00 3.56
167 170 9.686683 GATATATACCTGATTTTGGGCAATAGT 57.313 33.333 0.00 0.00 0.00 2.12
201 213 1.604278 GTGAACACCTGGAGTCAAAGC 59.396 52.381 0.00 0.00 0.00 3.51
220 232 1.571919 CGACAAGCTATAGCACCACC 58.428 55.000 26.07 10.13 45.16 4.61
224 236 4.679639 CGACAAGCTATAGCACCACCTTTA 60.680 45.833 26.07 0.00 45.16 1.85
271 289 4.587891 AGCTAGCTGAGATCTTTTTGCTT 58.412 39.130 18.57 0.00 32.72 3.91
290 311 2.941583 AAACCAGAGAGGGCCCCC 60.942 66.667 21.43 6.71 43.89 5.40
319 340 2.254546 TCATGCTAATAACGGGGCTG 57.745 50.000 0.00 0.00 0.00 4.85
321 342 1.136828 ATGCTAATAACGGGGCTGGA 58.863 50.000 0.00 0.00 0.00 3.86
323 344 0.878961 GCTAATAACGGGGCTGGACG 60.879 60.000 0.00 0.00 0.00 4.79
374 395 1.605710 AGTGTTGCAGCATCAGTTGTC 59.394 47.619 6.50 0.00 0.00 3.18
389 410 2.011222 GTTGTCGTTTCCTGTCCACAA 58.989 47.619 0.00 0.00 0.00 3.33
403 424 4.713553 TGTCCACAAGCTACAAATCTTCA 58.286 39.130 0.00 0.00 0.00 3.02
422 443 2.762887 TCAAAAGCACAACATGTTCCCA 59.237 40.909 8.48 0.00 0.00 4.37
501 527 4.101741 AGACCACTCTAACTCCAATATGGC 59.898 45.833 0.00 0.00 37.47 4.40
578 631 2.896168 CGGAGACCGCCAAAGTAAATA 58.104 47.619 0.00 0.00 41.17 1.40
627 680 6.772716 CACTGTGTCCTTTATGGCCTAATTAT 59.227 38.462 3.32 0.00 35.26 1.28
631 684 7.936847 TGTGTCCTTTATGGCCTAATTATACTG 59.063 37.037 3.32 0.00 35.26 2.74
632 685 7.937394 GTGTCCTTTATGGCCTAATTATACTGT 59.063 37.037 3.32 0.00 35.26 3.55
633 686 9.161572 TGTCCTTTATGGCCTAATTATACTGTA 57.838 33.333 3.32 0.00 35.26 2.74
717 799 7.496346 TTATTTAATCACTCCCACTCTCAGT 57.504 36.000 0.00 0.00 0.00 3.41
818 2737 5.269189 TGGAGTACCAAGAGTATGATCACA 58.731 41.667 0.00 0.00 43.91 3.58
907 2827 0.037447 GGAGAGCTTCAACAAGGCCT 59.963 55.000 0.00 0.00 0.00 5.19
968 2891 2.486982 CTCCTCAGTTGTTGCCATTGAG 59.513 50.000 0.00 0.00 34.71 3.02
1155 3082 2.612285 TCTCTCACAGGATCCACACT 57.388 50.000 15.82 0.00 0.00 3.55
1231 3161 2.125350 GCAAGGTCGAGAGGCAGG 60.125 66.667 0.00 0.00 37.54 4.85
1259 3192 4.212716 CATGGGATGGTTGATGATCTGTT 58.787 43.478 0.00 0.00 0.00 3.16
1372 3305 5.870433 TGTTGTTACACTTATGGGTATGACG 59.130 40.000 0.00 0.00 0.00 4.35
1375 3308 5.185442 TGTTACACTTATGGGTATGACGACA 59.815 40.000 0.00 0.00 0.00 4.35
1405 3338 1.144936 GAAGATGAGCCCTCGGTGG 59.855 63.158 0.00 0.00 0.00 4.61
1416 3349 0.680921 CCTCGGTGGTGGATGCAATT 60.681 55.000 0.00 0.00 0.00 2.32
1480 3413 0.032678 CGATATCGACCAGGCTGCTT 59.967 55.000 20.50 0.00 43.02 3.91
1526 3459 4.023450 TGAGCAGATGAACAAGAGCTTTTG 60.023 41.667 15.05 15.05 31.61 2.44
1559 3492 6.745116 TCATTCCATATGTACCTTACACGAG 58.255 40.000 1.24 0.00 42.23 4.18
1562 3495 4.951715 TCCATATGTACCTTACACGAGTGT 59.048 41.667 13.68 13.68 46.87 3.55
1586 3519 5.934402 ACCACTAAATAGGTGACACTAGG 57.066 43.478 5.39 0.00 36.60 3.02
1635 3589 2.434884 CGAGTGGGCGCATGAACT 60.435 61.111 10.83 6.47 0.00 3.01
1638 3592 2.126346 GTGGGCGCATGAACTTGC 60.126 61.111 10.83 3.17 39.29 4.01
1639 3593 2.596923 TGGGCGCATGAACTTGCA 60.597 55.556 10.83 0.00 42.91 4.08
1640 3594 1.978080 TGGGCGCATGAACTTGCAT 60.978 52.632 10.83 0.00 42.91 3.96
1641 3595 1.517694 GGGCGCATGAACTTGCATG 60.518 57.895 10.83 0.00 46.48 4.06
1673 3627 4.857871 TTCACGATAGGAGATTTTTGCG 57.142 40.909 0.00 0.00 43.77 4.85
1794 3906 5.761818 AGCAAAACTGAAAGAAAAACACG 57.238 34.783 0.00 0.00 37.43 4.49
1796 3908 6.099341 AGCAAAACTGAAAGAAAAACACGAT 58.901 32.000 0.00 0.00 37.43 3.73
1797 3909 6.589907 AGCAAAACTGAAAGAAAAACACGATT 59.410 30.769 0.00 0.00 37.43 3.34
1798 3910 7.117667 AGCAAAACTGAAAGAAAAACACGATTT 59.882 29.630 0.00 0.00 37.43 2.17
1800 3912 9.592720 CAAAACTGAAAGAAAAACACGATTTTT 57.407 25.926 12.53 12.53 37.43 1.94
1846 3963 9.398170 CTAAATTGTTTGATCTTGATTCAACGT 57.602 29.630 0.00 0.00 33.03 3.99
1858 3975 6.590292 TCTTGATTCAACGTATCTTGAGTTCC 59.410 38.462 0.00 0.00 31.76 3.62
1862 3979 4.556233 TCAACGTATCTTGAGTTCCACAG 58.444 43.478 0.00 0.00 0.00 3.66
1929 4046 2.236893 GTTTGATTACCCTCCACCCGTA 59.763 50.000 0.00 0.00 0.00 4.02
1941 4058 3.183801 TCCACCCGTAAATCCCTACTTT 58.816 45.455 0.00 0.00 0.00 2.66
1956 4073 0.109723 ACTTTGGTTAGCCGGCTTCA 59.890 50.000 37.74 26.29 37.67 3.02
1977 4094 2.124736 TGTTGATGCTAGCCCGCC 60.125 61.111 13.29 0.00 0.00 6.13
1997 4114 4.987408 CCATACAATGGTTGCATCAAGA 57.013 40.909 0.00 0.00 45.54 3.02
2019 4136 3.009115 GGCAGGACCCAGGCACTA 61.009 66.667 3.51 0.00 36.02 2.74
2020 4137 2.269241 GCAGGACCCAGGCACTAC 59.731 66.667 0.00 0.00 36.02 2.73
2021 4138 2.990479 CAGGACCCAGGCACTACC 59.010 66.667 0.00 0.00 36.02 3.18
2022 4139 2.683933 AGGACCCAGGCACTACCG 60.684 66.667 0.00 0.00 46.52 4.02
2023 4140 3.782443 GGACCCAGGCACTACCGG 61.782 72.222 0.00 0.00 46.52 5.28
2024 4141 2.682494 GACCCAGGCACTACCGGA 60.682 66.667 9.46 0.00 46.52 5.14
2025 4142 2.203877 ACCCAGGCACTACCGGAA 60.204 61.111 9.46 0.00 46.52 4.30
2026 4143 2.267961 CCCAGGCACTACCGGAAC 59.732 66.667 9.46 0.00 46.52 3.62
2027 4144 2.589157 CCCAGGCACTACCGGAACA 61.589 63.158 9.46 0.00 46.52 3.18
2028 4145 1.079127 CCAGGCACTACCGGAACAG 60.079 63.158 9.46 4.49 46.52 3.16
2029 4146 1.079127 CAGGCACTACCGGAACAGG 60.079 63.158 9.46 0.00 46.52 4.00
2030 4147 2.267961 GGCACTACCGGAACAGGG 59.732 66.667 9.46 4.14 35.02 4.45
2031 4148 2.267961 GCACTACCGGAACAGGGG 59.732 66.667 9.46 0.44 35.02 4.79
2032 4149 2.987125 CACTACCGGAACAGGGGG 59.013 66.667 9.46 0.00 35.02 5.40
2050 4167 3.908081 GCTATCCCGACGGCCGAA 61.908 66.667 35.90 11.82 41.76 4.30
2051 4168 2.809706 CTATCCCGACGGCCGAAA 59.190 61.111 35.90 12.21 41.76 3.46
2052 4169 1.590792 CTATCCCGACGGCCGAAAC 60.591 63.158 35.90 20.73 41.76 2.78
2053 4170 2.287457 CTATCCCGACGGCCGAAACA 62.287 60.000 35.90 11.79 41.76 2.83
2054 4171 1.886253 TATCCCGACGGCCGAAACAA 61.886 55.000 35.90 14.61 41.76 2.83
2055 4172 2.530958 ATCCCGACGGCCGAAACAAT 62.531 55.000 35.90 16.34 41.76 2.71
2056 4173 1.448189 CCCGACGGCCGAAACAATA 60.448 57.895 35.90 0.00 41.76 1.90
2057 4174 1.698714 CCCGACGGCCGAAACAATAC 61.699 60.000 35.90 10.71 41.76 1.89
2058 4175 1.698714 CCGACGGCCGAAACAATACC 61.699 60.000 35.90 7.58 41.76 2.73
2059 4176 1.015085 CGACGGCCGAAACAATACCA 61.015 55.000 35.90 0.00 41.76 3.25
2060 4177 1.158434 GACGGCCGAAACAATACCAA 58.842 50.000 35.90 0.00 0.00 3.67
2061 4178 0.876399 ACGGCCGAAACAATACCAAC 59.124 50.000 35.90 0.00 0.00 3.77
2062 4179 0.875728 CGGCCGAAACAATACCAACA 59.124 50.000 24.07 0.00 0.00 3.33
2063 4180 1.135803 CGGCCGAAACAATACCAACAG 60.136 52.381 24.07 0.00 0.00 3.16
2064 4181 1.402325 GGCCGAAACAATACCAACAGC 60.402 52.381 0.00 0.00 0.00 4.40
2065 4182 1.727857 GCCGAAACAATACCAACAGCG 60.728 52.381 0.00 0.00 0.00 5.18
2066 4183 1.602191 CGAAACAATACCAACAGCGC 58.398 50.000 0.00 0.00 0.00 5.92
2067 4184 1.727857 CGAAACAATACCAACAGCGCC 60.728 52.381 2.29 0.00 0.00 6.53
2068 4185 0.601057 AAACAATACCAACAGCGCCC 59.399 50.000 2.29 0.00 0.00 6.13
2069 4186 1.582610 AACAATACCAACAGCGCCCG 61.583 55.000 2.29 0.00 0.00 6.13
2070 4187 2.038269 CAATACCAACAGCGCCCGT 61.038 57.895 2.29 0.00 0.00 5.28
2071 4188 1.743995 AATACCAACAGCGCCCGTC 60.744 57.895 2.29 0.00 0.00 4.79
2072 4189 2.457743 AATACCAACAGCGCCCGTCA 62.458 55.000 2.29 0.00 0.00 4.35
2073 4190 2.852495 ATACCAACAGCGCCCGTCAG 62.852 60.000 2.29 0.00 0.00 3.51
2078 4195 4.227134 CAGCGCCCGTCAGCCTAT 62.227 66.667 2.29 0.00 0.00 2.57
2079 4196 3.470888 AGCGCCCGTCAGCCTATT 61.471 61.111 2.29 0.00 0.00 1.73
2080 4197 2.967615 GCGCCCGTCAGCCTATTC 60.968 66.667 0.00 0.00 0.00 1.75
2081 4198 2.499205 CGCCCGTCAGCCTATTCA 59.501 61.111 0.00 0.00 0.00 2.57
2082 4199 1.592669 CGCCCGTCAGCCTATTCAG 60.593 63.158 0.00 0.00 0.00 3.02
2083 4200 1.823295 GCCCGTCAGCCTATTCAGA 59.177 57.895 0.00 0.00 0.00 3.27
2084 4201 0.249657 GCCCGTCAGCCTATTCAGAG 60.250 60.000 0.00 0.00 0.00 3.35
2085 4202 0.249657 CCCGTCAGCCTATTCAGAGC 60.250 60.000 0.00 0.00 0.00 4.09
2086 4203 0.749649 CCGTCAGCCTATTCAGAGCT 59.250 55.000 0.00 0.00 37.32 4.09
2087 4204 1.957177 CCGTCAGCCTATTCAGAGCTA 59.043 52.381 0.00 0.00 34.38 3.32
2088 4205 2.560542 CCGTCAGCCTATTCAGAGCTAT 59.439 50.000 0.00 0.00 34.38 2.97
2089 4206 3.573598 CGTCAGCCTATTCAGAGCTATG 58.426 50.000 0.69 0.69 34.38 2.23
2090 4207 3.324993 GTCAGCCTATTCAGAGCTATGC 58.675 50.000 2.68 0.00 34.38 3.14
2091 4208 2.301296 TCAGCCTATTCAGAGCTATGCC 59.699 50.000 2.68 0.00 34.38 4.40
2092 4209 1.274728 AGCCTATTCAGAGCTATGCCG 59.725 52.381 2.68 0.00 34.38 5.69
2093 4210 1.273606 GCCTATTCAGAGCTATGCCGA 59.726 52.381 2.68 0.00 0.00 5.54
2094 4211 2.928731 GCCTATTCAGAGCTATGCCGAC 60.929 54.545 2.68 0.00 0.00 4.79
2095 4212 2.297315 CCTATTCAGAGCTATGCCGACA 59.703 50.000 2.68 0.00 0.00 4.35
2096 4213 2.988010 ATTCAGAGCTATGCCGACAA 57.012 45.000 2.68 0.00 0.00 3.18
2097 4214 2.010145 TTCAGAGCTATGCCGACAAC 57.990 50.000 2.68 0.00 0.00 3.32
2098 4215 0.175760 TCAGAGCTATGCCGACAACC 59.824 55.000 2.68 0.00 0.00 3.77
2099 4216 1.141881 AGAGCTATGCCGACAACCG 59.858 57.895 0.00 0.00 38.18 4.44
2109 4226 3.637273 GACAACCGGGTCCAGGCT 61.637 66.667 6.32 0.00 0.00 4.58
2110 4227 3.175710 ACAACCGGGTCCAGGCTT 61.176 61.111 6.32 0.00 0.00 4.35
2111 4228 2.359975 CAACCGGGTCCAGGCTTC 60.360 66.667 6.32 0.00 0.00 3.86
2112 4229 4.016706 AACCGGGTCCAGGCTTCG 62.017 66.667 6.32 0.00 0.00 3.79
2123 4240 2.437895 GGCTTCGGGCTACCAACC 60.438 66.667 1.83 0.00 41.46 3.77
2131 4248 2.663196 GCTACCAACCGAGCCTGT 59.337 61.111 0.00 0.00 32.25 4.00
2132 4249 1.003718 GCTACCAACCGAGCCTGTT 60.004 57.895 0.00 0.00 32.25 3.16
2133 4250 0.248289 GCTACCAACCGAGCCTGTTA 59.752 55.000 0.00 0.00 32.25 2.41
2134 4251 1.739371 GCTACCAACCGAGCCTGTTAG 60.739 57.143 0.00 0.00 32.25 2.34
2135 4252 1.822990 CTACCAACCGAGCCTGTTAGA 59.177 52.381 0.00 0.00 0.00 2.10
2136 4253 0.608640 ACCAACCGAGCCTGTTAGAG 59.391 55.000 0.00 0.00 0.00 2.43
2137 4254 0.895530 CCAACCGAGCCTGTTAGAGA 59.104 55.000 0.00 0.00 0.00 3.10
2138 4255 1.134965 CCAACCGAGCCTGTTAGAGAG 60.135 57.143 0.00 0.00 0.00 3.20
2139 4256 1.546476 CAACCGAGCCTGTTAGAGAGT 59.454 52.381 0.00 0.00 0.00 3.24
2140 4257 2.753452 CAACCGAGCCTGTTAGAGAGTA 59.247 50.000 0.00 0.00 0.00 2.59
2141 4258 2.367486 ACCGAGCCTGTTAGAGAGTAC 58.633 52.381 0.00 0.00 0.00 2.73
2142 4259 1.331138 CCGAGCCTGTTAGAGAGTACG 59.669 57.143 0.00 0.00 0.00 3.67
2143 4260 1.331138 CGAGCCTGTTAGAGAGTACGG 59.669 57.143 0.00 0.00 0.00 4.02
2144 4261 1.677052 GAGCCTGTTAGAGAGTACGGG 59.323 57.143 0.00 0.00 42.56 5.28
2145 4262 0.745468 GCCTGTTAGAGAGTACGGGG 59.255 60.000 0.00 0.00 40.48 5.73
2146 4263 0.745468 CCTGTTAGAGAGTACGGGGC 59.255 60.000 0.00 0.00 37.19 5.80
2147 4264 0.381089 CTGTTAGAGAGTACGGGGCG 59.619 60.000 0.00 0.00 0.00 6.13
2148 4265 0.322816 TGTTAGAGAGTACGGGGCGT 60.323 55.000 0.00 0.00 44.35 5.68
2149 4266 0.813821 GTTAGAGAGTACGGGGCGTT 59.186 55.000 0.00 0.00 41.54 4.84
2150 4267 1.098050 TTAGAGAGTACGGGGCGTTC 58.902 55.000 0.00 0.00 41.54 3.95
2151 4268 1.091771 TAGAGAGTACGGGGCGTTCG 61.092 60.000 0.00 0.00 41.54 3.95
2152 4269 4.125695 AGAGTACGGGGCGTTCGC 62.126 66.667 8.75 8.75 41.54 4.70
2153 4270 4.424566 GAGTACGGGGCGTTCGCA 62.425 66.667 18.46 0.00 41.54 5.10
2154 4271 4.430765 AGTACGGGGCGTTCGCAG 62.431 66.667 18.46 11.28 41.54 5.18
2163 4280 2.577059 CGTTCGCAGCCTCCCTTA 59.423 61.111 0.00 0.00 0.00 2.69
2164 4281 1.519455 CGTTCGCAGCCTCCCTTAG 60.519 63.158 0.00 0.00 0.00 2.18
2165 4282 1.815840 GTTCGCAGCCTCCCTTAGC 60.816 63.158 0.00 0.00 0.00 3.09
2166 4283 3.031417 TTCGCAGCCTCCCTTAGCC 62.031 63.158 0.00 0.00 0.00 3.93
2167 4284 4.554036 CGCAGCCTCCCTTAGCCC 62.554 72.222 0.00 0.00 0.00 5.19
2168 4285 4.554036 GCAGCCTCCCTTAGCCCG 62.554 72.222 0.00 0.00 0.00 6.13
2169 4286 4.554036 CAGCCTCCCTTAGCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
2172 4289 3.866582 CCTCCCTTAGCCCGCCAG 61.867 72.222 0.00 0.00 0.00 4.85
2173 4290 4.554036 CTCCCTTAGCCCGCCAGC 62.554 72.222 0.00 0.00 0.00 4.85
2175 4292 4.195334 CCCTTAGCCCGCCAGCAT 62.195 66.667 0.00 0.00 34.23 3.79
2176 4293 2.903855 CCTTAGCCCGCCAGCATG 60.904 66.667 0.00 0.00 34.23 4.06
2177 4294 2.124570 CTTAGCCCGCCAGCATGT 60.125 61.111 0.00 0.00 34.23 3.21
2178 4295 1.750399 CTTAGCCCGCCAGCATGTT 60.750 57.895 0.00 0.00 34.23 2.71
2179 4296 1.996786 CTTAGCCCGCCAGCATGTTG 61.997 60.000 1.98 1.98 34.23 3.33
2180 4297 2.762969 TTAGCCCGCCAGCATGTTGT 62.763 55.000 8.84 0.00 34.23 3.32
2181 4298 1.904990 TAGCCCGCCAGCATGTTGTA 61.905 55.000 8.84 0.00 34.23 2.41
2182 4299 2.339556 GCCCGCCAGCATGTTGTAA 61.340 57.895 8.84 0.00 0.00 2.41
2183 4300 1.802636 CCCGCCAGCATGTTGTAAG 59.197 57.895 8.84 0.00 0.00 2.34
2184 4301 0.960364 CCCGCCAGCATGTTGTAAGT 60.960 55.000 8.84 0.00 0.00 2.24
2185 4302 1.677518 CCCGCCAGCATGTTGTAAGTA 60.678 52.381 8.84 0.00 0.00 2.24
2186 4303 1.396996 CCGCCAGCATGTTGTAAGTAC 59.603 52.381 8.84 0.00 0.00 2.73
2187 4304 2.346803 CGCCAGCATGTTGTAAGTACT 58.653 47.619 8.84 0.00 0.00 2.73
2188 4305 2.742053 CGCCAGCATGTTGTAAGTACTT 59.258 45.455 13.68 13.68 0.00 2.24
2189 4306 3.181520 CGCCAGCATGTTGTAAGTACTTC 60.182 47.826 12.39 4.83 0.00 3.01
2190 4307 3.127030 GCCAGCATGTTGTAAGTACTTCC 59.873 47.826 12.39 0.29 0.00 3.46
2191 4308 3.689649 CCAGCATGTTGTAAGTACTTCCC 59.310 47.826 12.39 4.83 0.00 3.97
2192 4309 3.689649 CAGCATGTTGTAAGTACTTCCCC 59.310 47.826 12.39 2.21 0.00 4.81
2193 4310 3.014623 GCATGTTGTAAGTACTTCCCCC 58.985 50.000 12.39 0.00 0.00 5.40
2194 4311 3.308188 GCATGTTGTAAGTACTTCCCCCT 60.308 47.826 12.39 0.00 0.00 4.79
2195 4312 4.809691 GCATGTTGTAAGTACTTCCCCCTT 60.810 45.833 12.39 0.00 0.00 3.95
2196 4313 5.572066 GCATGTTGTAAGTACTTCCCCCTTA 60.572 44.000 12.39 0.00 0.00 2.69
2197 4314 6.659824 CATGTTGTAAGTACTTCCCCCTTAT 58.340 40.000 12.39 0.00 0.00 1.73
2198 4315 6.303903 TGTTGTAAGTACTTCCCCCTTATC 57.696 41.667 12.39 0.00 0.00 1.75
2199 4316 6.027482 TGTTGTAAGTACTTCCCCCTTATCT 58.973 40.000 12.39 0.00 0.00 1.98
2200 4317 6.502863 TGTTGTAAGTACTTCCCCCTTATCTT 59.497 38.462 12.39 0.00 0.00 2.40
2201 4318 6.803366 TGTAAGTACTTCCCCCTTATCTTC 57.197 41.667 12.39 0.00 0.00 2.87
2202 4319 6.509386 TGTAAGTACTTCCCCCTTATCTTCT 58.491 40.000 12.39 0.00 0.00 2.85
2203 4320 6.964086 TGTAAGTACTTCCCCCTTATCTTCTT 59.036 38.462 12.39 0.00 0.00 2.52
2204 4321 6.971932 AAGTACTTCCCCCTTATCTTCTTT 57.028 37.500 1.12 0.00 0.00 2.52
2205 4322 6.563037 AGTACTTCCCCCTTATCTTCTTTC 57.437 41.667 0.00 0.00 0.00 2.62
2206 4323 6.273104 AGTACTTCCCCCTTATCTTCTTTCT 58.727 40.000 0.00 0.00 0.00 2.52
2207 4324 5.702065 ACTTCCCCCTTATCTTCTTTCTC 57.298 43.478 0.00 0.00 0.00 2.87
2208 4325 5.354848 ACTTCCCCCTTATCTTCTTTCTCT 58.645 41.667 0.00 0.00 0.00 3.10
2209 4326 5.427157 ACTTCCCCCTTATCTTCTTTCTCTC 59.573 44.000 0.00 0.00 0.00 3.20
2210 4327 5.227917 TCCCCCTTATCTTCTTTCTCTCT 57.772 43.478 0.00 0.00 0.00 3.10
2211 4328 6.357015 TCCCCCTTATCTTCTTTCTCTCTA 57.643 41.667 0.00 0.00 0.00 2.43
2212 4329 6.753134 TCCCCCTTATCTTCTTTCTCTCTAA 58.247 40.000 0.00 0.00 0.00 2.10
2213 4330 6.612049 TCCCCCTTATCTTCTTTCTCTCTAAC 59.388 42.308 0.00 0.00 0.00 2.34
2214 4331 6.183361 CCCCCTTATCTTCTTTCTCTCTAACC 60.183 46.154 0.00 0.00 0.00 2.85
2215 4332 6.613679 CCCCTTATCTTCTTTCTCTCTAACCT 59.386 42.308 0.00 0.00 0.00 3.50
2216 4333 7.126573 CCCCTTATCTTCTTTCTCTCTAACCTT 59.873 40.741 0.00 0.00 0.00 3.50
2217 4334 8.201464 CCCTTATCTTCTTTCTCTCTAACCTTC 58.799 40.741 0.00 0.00 0.00 3.46
2218 4335 8.977412 CCTTATCTTCTTTCTCTCTAACCTTCT 58.023 37.037 0.00 0.00 0.00 2.85
2220 4337 9.535170 TTATCTTCTTTCTCTCTAACCTTCTCA 57.465 33.333 0.00 0.00 0.00 3.27
2221 4338 7.461182 TCTTCTTTCTCTCTAACCTTCTCAG 57.539 40.000 0.00 0.00 0.00 3.35
2222 4339 7.007723 TCTTCTTTCTCTCTAACCTTCTCAGT 58.992 38.462 0.00 0.00 0.00 3.41
2223 4340 7.507616 TCTTCTTTCTCTCTAACCTTCTCAGTT 59.492 37.037 0.00 0.00 0.00 3.16
2224 4341 7.604657 TCTTTCTCTCTAACCTTCTCAGTTT 57.395 36.000 0.00 0.00 0.00 2.66
2225 4342 8.707796 TCTTTCTCTCTAACCTTCTCAGTTTA 57.292 34.615 0.00 0.00 0.00 2.01
2226 4343 9.315363 TCTTTCTCTCTAACCTTCTCAGTTTAT 57.685 33.333 0.00 0.00 0.00 1.40
2227 4344 9.936759 CTTTCTCTCTAACCTTCTCAGTTTATT 57.063 33.333 0.00 0.00 0.00 1.40
2230 4347 9.930693 TCTCTCTAACCTTCTCAGTTTATTTTC 57.069 33.333 0.00 0.00 0.00 2.29
2231 4348 9.712305 CTCTCTAACCTTCTCAGTTTATTTTCA 57.288 33.333 0.00 0.00 0.00 2.69
2232 4349 9.712305 TCTCTAACCTTCTCAGTTTATTTTCAG 57.288 33.333 0.00 0.00 0.00 3.02
2233 4350 8.324163 TCTAACCTTCTCAGTTTATTTTCAGC 57.676 34.615 0.00 0.00 0.00 4.26
2234 4351 6.959639 AACCTTCTCAGTTTATTTTCAGCA 57.040 33.333 0.00 0.00 0.00 4.41
2235 4352 7.530426 AACCTTCTCAGTTTATTTTCAGCAT 57.470 32.000 0.00 0.00 0.00 3.79
2236 4353 7.530426 ACCTTCTCAGTTTATTTTCAGCATT 57.470 32.000 0.00 0.00 0.00 3.56
2237 4354 7.373493 ACCTTCTCAGTTTATTTTCAGCATTG 58.627 34.615 0.00 0.00 0.00 2.82
2238 4355 6.309737 CCTTCTCAGTTTATTTTCAGCATTGC 59.690 38.462 0.00 0.00 0.00 3.56
2239 4356 5.713025 TCTCAGTTTATTTTCAGCATTGCC 58.287 37.500 4.70 0.00 0.00 4.52
2240 4357 4.819769 TCAGTTTATTTTCAGCATTGCCC 58.180 39.130 4.70 0.00 0.00 5.36
2241 4358 4.282957 TCAGTTTATTTTCAGCATTGCCCA 59.717 37.500 4.70 0.00 0.00 5.36
2242 4359 4.389687 CAGTTTATTTTCAGCATTGCCCAC 59.610 41.667 4.70 0.00 0.00 4.61
2243 4360 4.284234 AGTTTATTTTCAGCATTGCCCACT 59.716 37.500 4.70 0.00 0.00 4.00
2244 4361 4.888326 TTATTTTCAGCATTGCCCACTT 57.112 36.364 4.70 0.00 0.00 3.16
2245 4362 5.991933 TTATTTTCAGCATTGCCCACTTA 57.008 34.783 4.70 0.00 0.00 2.24
2246 4363 3.940209 TTTTCAGCATTGCCCACTTAG 57.060 42.857 4.70 0.00 0.00 2.18
2247 4364 2.877097 TTCAGCATTGCCCACTTAGA 57.123 45.000 4.70 0.00 0.00 2.10
2248 4365 2.877097 TCAGCATTGCCCACTTAGAA 57.123 45.000 4.70 0.00 0.00 2.10
2249 4366 3.153369 TCAGCATTGCCCACTTAGAAA 57.847 42.857 4.70 0.00 0.00 2.52
2250 4367 2.819608 TCAGCATTGCCCACTTAGAAAC 59.180 45.455 4.70 0.00 0.00 2.78
2251 4368 2.557924 CAGCATTGCCCACTTAGAAACA 59.442 45.455 4.70 0.00 0.00 2.83
2252 4369 3.005684 CAGCATTGCCCACTTAGAAACAA 59.994 43.478 4.70 0.00 0.00 2.83
2253 4370 3.005791 AGCATTGCCCACTTAGAAACAAC 59.994 43.478 4.70 0.00 0.00 3.32
2254 4371 3.860754 GCATTGCCCACTTAGAAACAACC 60.861 47.826 0.00 0.00 0.00 3.77
2255 4372 3.306472 TTGCCCACTTAGAAACAACCT 57.694 42.857 0.00 0.00 0.00 3.50
2256 4373 4.440826 TTGCCCACTTAGAAACAACCTA 57.559 40.909 0.00 0.00 0.00 3.08
2257 4374 4.440826 TGCCCACTTAGAAACAACCTAA 57.559 40.909 0.00 0.00 0.00 2.69
2258 4375 4.993028 TGCCCACTTAGAAACAACCTAAT 58.007 39.130 0.00 0.00 0.00 1.73
2259 4376 5.390387 TGCCCACTTAGAAACAACCTAATT 58.610 37.500 0.00 0.00 0.00 1.40
2260 4377 5.836358 TGCCCACTTAGAAACAACCTAATTT 59.164 36.000 0.00 0.00 0.00 1.82
2261 4378 6.325286 TGCCCACTTAGAAACAACCTAATTTT 59.675 34.615 0.00 0.00 0.00 1.82
2262 4379 7.147637 TGCCCACTTAGAAACAACCTAATTTTT 60.148 33.333 0.00 0.00 0.00 1.94
2288 4405 3.969899 GCATATAAGGCCTTTGTCAAGC 58.030 45.455 26.08 16.34 0.00 4.01
2289 4406 3.381272 GCATATAAGGCCTTTGTCAAGCA 59.619 43.478 26.08 2.41 0.00 3.91
2290 4407 4.038402 GCATATAAGGCCTTTGTCAAGCAT 59.962 41.667 26.08 10.88 0.00 3.79
2291 4408 5.241506 GCATATAAGGCCTTTGTCAAGCATA 59.758 40.000 26.08 12.87 0.00 3.14
2292 4409 6.569226 GCATATAAGGCCTTTGTCAAGCATAG 60.569 42.308 26.08 7.76 0.00 2.23
2293 4410 2.134789 AGGCCTTTGTCAAGCATAGG 57.865 50.000 0.00 0.00 45.47 2.57
2294 4411 1.635487 AGGCCTTTGTCAAGCATAGGA 59.365 47.619 0.00 0.00 45.52 2.94
2295 4412 2.041620 AGGCCTTTGTCAAGCATAGGAA 59.958 45.455 0.00 0.00 45.52 3.36
2296 4413 3.026694 GGCCTTTGTCAAGCATAGGAAT 58.973 45.455 5.37 0.00 45.52 3.01
2297 4414 3.067320 GGCCTTTGTCAAGCATAGGAATC 59.933 47.826 5.37 0.00 45.52 2.52
2298 4415 3.950395 GCCTTTGTCAAGCATAGGAATCT 59.050 43.478 5.37 0.00 45.52 2.40
2299 4416 4.036144 GCCTTTGTCAAGCATAGGAATCTC 59.964 45.833 5.37 0.00 45.52 2.75
2300 4417 5.188434 CCTTTGTCAAGCATAGGAATCTCA 58.812 41.667 0.00 0.00 45.52 3.27
2301 4418 5.649395 CCTTTGTCAAGCATAGGAATCTCAA 59.351 40.000 0.00 0.00 45.52 3.02
2302 4419 6.183360 CCTTTGTCAAGCATAGGAATCTCAAG 60.183 42.308 0.00 0.00 45.52 3.02
2303 4420 4.774124 TGTCAAGCATAGGAATCTCAAGG 58.226 43.478 0.00 0.00 0.00 3.61
2304 4421 4.225942 TGTCAAGCATAGGAATCTCAAGGT 59.774 41.667 0.00 0.00 0.00 3.50
2305 4422 4.574013 GTCAAGCATAGGAATCTCAAGGTG 59.426 45.833 0.00 0.00 0.00 4.00
2306 4423 3.205784 AGCATAGGAATCTCAAGGTGC 57.794 47.619 0.00 0.00 0.00 5.01
2307 4424 1.869767 GCATAGGAATCTCAAGGTGCG 59.130 52.381 0.00 0.00 0.00 5.34
2308 4425 2.487934 CATAGGAATCTCAAGGTGCGG 58.512 52.381 0.00 0.00 0.00 5.69
2309 4426 0.830648 TAGGAATCTCAAGGTGCGGG 59.169 55.000 0.00 0.00 0.00 6.13
2310 4427 0.909610 AGGAATCTCAAGGTGCGGGA 60.910 55.000 0.00 0.00 0.00 5.14
2311 4428 0.462759 GGAATCTCAAGGTGCGGGAG 60.463 60.000 0.00 0.00 0.00 4.30
2312 4429 0.250513 GAATCTCAAGGTGCGGGAGT 59.749 55.000 0.00 0.00 0.00 3.85
2313 4430 1.480954 GAATCTCAAGGTGCGGGAGTA 59.519 52.381 0.00 0.00 0.00 2.59
2314 4431 0.824759 ATCTCAAGGTGCGGGAGTAC 59.175 55.000 0.00 0.00 45.26 2.73
2315 4432 0.251653 TCTCAAGGTGCGGGAGTACT 60.252 55.000 0.00 0.00 45.32 2.73
2316 4433 0.608640 CTCAAGGTGCGGGAGTACTT 59.391 55.000 0.00 0.00 45.32 2.24
2317 4434 0.320374 TCAAGGTGCGGGAGTACTTG 59.680 55.000 0.00 0.00 45.32 3.16
2318 4435 1.003718 AAGGTGCGGGAGTACTTGC 60.004 57.895 0.00 2.66 45.32 4.01
2319 4436 1.764571 AAGGTGCGGGAGTACTTGCA 61.765 55.000 12.61 12.61 45.32 4.08
2320 4437 1.302192 GGTGCGGGAGTACTTGCAA 60.302 57.895 16.74 0.00 45.32 4.08
2321 4438 1.574702 GGTGCGGGAGTACTTGCAAC 61.575 60.000 16.74 15.92 45.32 4.17
2322 4439 1.666553 TGCGGGAGTACTTGCAACG 60.667 57.895 13.83 0.00 33.80 4.10
2323 4440 1.373748 GCGGGAGTACTTGCAACGA 60.374 57.895 7.45 0.00 0.00 3.85
2324 4441 1.352156 GCGGGAGTACTTGCAACGAG 61.352 60.000 7.45 0.00 0.00 4.18
2325 4442 0.038526 CGGGAGTACTTGCAACGAGT 60.039 55.000 0.00 0.00 0.00 4.18
2326 4443 1.200716 CGGGAGTACTTGCAACGAGTA 59.799 52.381 0.00 0.00 0.00 2.59
2327 4444 2.352030 CGGGAGTACTTGCAACGAGTAA 60.352 50.000 0.00 0.00 31.86 2.24
2328 4445 3.656559 GGGAGTACTTGCAACGAGTAAA 58.343 45.455 0.00 0.00 31.86 2.01
2329 4446 3.678548 GGGAGTACTTGCAACGAGTAAAG 59.321 47.826 0.00 0.00 31.86 1.85
2330 4447 3.678548 GGAGTACTTGCAACGAGTAAAGG 59.321 47.826 0.00 0.00 31.86 3.11
2331 4448 3.064931 AGTACTTGCAACGAGTAAAGGC 58.935 45.455 0.00 0.00 31.86 4.35
2332 4449 1.961793 ACTTGCAACGAGTAAAGGCA 58.038 45.000 0.00 0.00 0.00 4.75
2333 4450 2.294074 ACTTGCAACGAGTAAAGGCAA 58.706 42.857 0.00 0.00 41.67 4.52
2334 4451 2.685897 ACTTGCAACGAGTAAAGGCAAA 59.314 40.909 0.00 0.00 43.08 3.68
2335 4452 2.766970 TGCAACGAGTAAAGGCAAAC 57.233 45.000 0.00 0.00 0.00 2.93
2336 4453 1.003331 TGCAACGAGTAAAGGCAAACG 60.003 47.619 0.00 0.00 0.00 3.60
2337 4454 1.262151 GCAACGAGTAAAGGCAAACGA 59.738 47.619 0.00 0.00 0.00 3.85
2338 4455 2.095919 GCAACGAGTAAAGGCAAACGAT 60.096 45.455 0.00 0.00 0.00 3.73
2339 4456 3.479006 CAACGAGTAAAGGCAAACGATG 58.521 45.455 0.00 0.00 0.00 3.84
2340 4457 3.034721 ACGAGTAAAGGCAAACGATGA 57.965 42.857 0.00 0.00 0.00 2.92
2341 4458 3.596214 ACGAGTAAAGGCAAACGATGAT 58.404 40.909 0.00 0.00 0.00 2.45
2342 4459 4.000988 ACGAGTAAAGGCAAACGATGATT 58.999 39.130 0.00 0.00 0.00 2.57
2343 4460 5.172934 ACGAGTAAAGGCAAACGATGATTA 58.827 37.500 0.00 0.00 0.00 1.75
2344 4461 5.063060 ACGAGTAAAGGCAAACGATGATTAC 59.937 40.000 0.00 0.00 0.00 1.89
2345 4462 5.062934 CGAGTAAAGGCAAACGATGATTACA 59.937 40.000 0.00 0.00 31.73 2.41
2346 4463 6.401688 CGAGTAAAGGCAAACGATGATTACAA 60.402 38.462 0.00 0.00 31.73 2.41
2347 4464 6.608610 AGTAAAGGCAAACGATGATTACAAC 58.391 36.000 0.00 0.00 31.73 3.32
2348 4465 4.434713 AAGGCAAACGATGATTACAACC 57.565 40.909 0.00 0.00 0.00 3.77
2349 4466 2.418628 AGGCAAACGATGATTACAACCG 59.581 45.455 0.00 0.00 0.00 4.44
2350 4467 2.160813 GGCAAACGATGATTACAACCGT 59.839 45.455 0.00 0.00 34.74 4.83
2351 4468 3.413558 GCAAACGATGATTACAACCGTC 58.586 45.455 0.00 0.00 32.64 4.79
2352 4469 3.120477 GCAAACGATGATTACAACCGTCA 60.120 43.478 0.00 0.00 32.64 4.35
2353 4470 4.637968 CAAACGATGATTACAACCGTCAG 58.362 43.478 0.00 0.00 32.64 3.51
2354 4471 3.861276 ACGATGATTACAACCGTCAGA 57.139 42.857 0.00 0.00 0.00 3.27
2355 4472 4.386867 ACGATGATTACAACCGTCAGAT 57.613 40.909 0.00 0.00 0.00 2.90
2356 4473 4.112634 ACGATGATTACAACCGTCAGATG 58.887 43.478 0.00 0.00 0.00 2.90
2357 4474 4.142249 ACGATGATTACAACCGTCAGATGA 60.142 41.667 0.00 0.00 0.00 2.92
2358 4475 4.984785 CGATGATTACAACCGTCAGATGAT 59.015 41.667 0.00 0.00 0.00 2.45
2359 4476 5.107722 CGATGATTACAACCGTCAGATGATG 60.108 44.000 0.00 0.00 0.00 3.07
2360 4477 5.337578 TGATTACAACCGTCAGATGATGA 57.662 39.130 3.58 0.00 34.79 2.92
2373 4490 4.391830 TCAGATGATGACGGTTAGTTTTGC 59.608 41.667 0.00 0.00 31.12 3.68
2374 4491 3.689649 AGATGATGACGGTTAGTTTTGCC 59.310 43.478 0.00 0.00 0.00 4.52
2375 4492 2.156098 TGATGACGGTTAGTTTTGCCC 58.844 47.619 0.00 0.00 0.00 5.36
2376 4493 2.224670 TGATGACGGTTAGTTTTGCCCT 60.225 45.455 0.00 0.00 0.00 5.19
2377 4494 1.886886 TGACGGTTAGTTTTGCCCTC 58.113 50.000 0.00 0.00 0.00 4.30
2378 4495 1.418637 TGACGGTTAGTTTTGCCCTCT 59.581 47.619 0.00 0.00 0.00 3.69
2379 4496 2.158726 TGACGGTTAGTTTTGCCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
2380 4497 3.071312 TGACGGTTAGTTTTGCCCTCTTA 59.929 43.478 0.00 0.00 0.00 2.10
2381 4498 4.067192 GACGGTTAGTTTTGCCCTCTTAA 58.933 43.478 0.00 0.00 0.00 1.85
2382 4499 4.463070 ACGGTTAGTTTTGCCCTCTTAAA 58.537 39.130 0.00 0.00 0.00 1.52
2383 4500 4.888823 ACGGTTAGTTTTGCCCTCTTAAAA 59.111 37.500 0.00 0.00 0.00 1.52
2384 4501 5.217393 CGGTTAGTTTTGCCCTCTTAAAAC 58.783 41.667 0.00 0.00 43.55 2.43
2385 4502 5.535333 GGTTAGTTTTGCCCTCTTAAAACC 58.465 41.667 0.00 0.00 44.00 3.27
2386 4503 5.069383 GGTTAGTTTTGCCCTCTTAAAACCA 59.931 40.000 0.00 0.00 44.00 3.67
2387 4504 6.407187 GGTTAGTTTTGCCCTCTTAAAACCAA 60.407 38.462 0.00 0.00 44.00 3.67
2388 4505 5.276461 AGTTTTGCCCTCTTAAAACCAAG 57.724 39.130 0.00 0.00 44.00 3.61
2389 4506 3.744238 TTTGCCCTCTTAAAACCAAGC 57.256 42.857 0.00 0.00 0.00 4.01
2390 4507 2.675658 TGCCCTCTTAAAACCAAGCT 57.324 45.000 0.00 0.00 0.00 3.74
2391 4508 3.799432 TGCCCTCTTAAAACCAAGCTA 57.201 42.857 0.00 0.00 0.00 3.32
2392 4509 4.107127 TGCCCTCTTAAAACCAAGCTAA 57.893 40.909 0.00 0.00 0.00 3.09
2393 4510 4.475345 TGCCCTCTTAAAACCAAGCTAAA 58.525 39.130 0.00 0.00 0.00 1.85
2394 4511 5.083821 TGCCCTCTTAAAACCAAGCTAAAT 58.916 37.500 0.00 0.00 0.00 1.40
2395 4512 5.542251 TGCCCTCTTAAAACCAAGCTAAATT 59.458 36.000 0.00 0.00 0.00 1.82
2396 4513 6.042666 TGCCCTCTTAAAACCAAGCTAAATTT 59.957 34.615 0.00 0.00 0.00 1.82
2397 4514 6.934645 GCCCTCTTAAAACCAAGCTAAATTTT 59.065 34.615 0.00 0.00 0.00 1.82
2398 4515 7.095229 GCCCTCTTAAAACCAAGCTAAATTTTG 60.095 37.037 0.00 0.00 0.00 2.44
2399 4516 7.095229 CCCTCTTAAAACCAAGCTAAATTTTGC 60.095 37.037 15.58 15.58 0.00 3.68
2400 4517 7.440856 CCTCTTAAAACCAAGCTAAATTTTGCA 59.559 33.333 23.32 0.89 0.00 4.08
2401 4518 8.137210 TCTTAAAACCAAGCTAAATTTTGCAC 57.863 30.769 23.32 0.00 0.00 4.57
2402 4519 7.984617 TCTTAAAACCAAGCTAAATTTTGCACT 59.015 29.630 23.32 9.73 0.00 4.40
2403 4520 8.499403 TTAAAACCAAGCTAAATTTTGCACTT 57.501 26.923 23.32 9.68 0.00 3.16
2404 4521 7.389803 AAAACCAAGCTAAATTTTGCACTTT 57.610 28.000 23.32 12.68 0.00 2.66
2405 4522 6.603237 AACCAAGCTAAATTTTGCACTTTC 57.397 33.333 23.32 0.00 0.00 2.62
2406 4523 5.669477 ACCAAGCTAAATTTTGCACTTTCA 58.331 33.333 23.32 0.00 0.00 2.69
2407 4524 6.290605 ACCAAGCTAAATTTTGCACTTTCAT 58.709 32.000 23.32 1.56 0.00 2.57
2408 4525 6.767423 ACCAAGCTAAATTTTGCACTTTCATT 59.233 30.769 23.32 7.16 0.00 2.57
2409 4526 7.282901 ACCAAGCTAAATTTTGCACTTTCATTT 59.717 29.630 23.32 6.53 0.00 2.32
2410 4527 7.799914 CCAAGCTAAATTTTGCACTTTCATTTC 59.200 33.333 23.32 0.00 0.00 2.17
2411 4528 8.553696 CAAGCTAAATTTTGCACTTTCATTTCT 58.446 29.630 23.32 0.00 0.00 2.52
2412 4529 8.667076 AGCTAAATTTTGCACTTTCATTTCTT 57.333 26.923 23.32 0.00 0.00 2.52
2413 4530 8.768019 AGCTAAATTTTGCACTTTCATTTCTTC 58.232 29.630 23.32 0.00 0.00 2.87
2414 4531 8.768019 GCTAAATTTTGCACTTTCATTTCTTCT 58.232 29.630 17.94 0.00 0.00 2.85
2416 4533 8.721019 AAATTTTGCACTTTCATTTCTTCTGA 57.279 26.923 0.00 0.00 0.00 3.27
2417 4534 8.897872 AATTTTGCACTTTCATTTCTTCTGAT 57.102 26.923 0.00 0.00 0.00 2.90
2418 4535 7.935338 TTTTGCACTTTCATTTCTTCTGATC 57.065 32.000 0.00 0.00 0.00 2.92
2419 4536 6.889301 TTGCACTTTCATTTCTTCTGATCT 57.111 33.333 0.00 0.00 0.00 2.75
2420 4537 6.889301 TGCACTTTCATTTCTTCTGATCTT 57.111 33.333 0.00 0.00 0.00 2.40
2421 4538 6.906659 TGCACTTTCATTTCTTCTGATCTTC 58.093 36.000 0.00 0.00 0.00 2.87
2422 4539 6.713903 TGCACTTTCATTTCTTCTGATCTTCT 59.286 34.615 0.00 0.00 0.00 2.85
2423 4540 7.879677 TGCACTTTCATTTCTTCTGATCTTCTA 59.120 33.333 0.00 0.00 0.00 2.10
2424 4541 8.725148 GCACTTTCATTTCTTCTGATCTTCTAA 58.275 33.333 0.00 0.00 0.00 2.10
2430 4547 9.458727 TCATTTCTTCTGATCTTCTAATTTGCT 57.541 29.630 0.00 0.00 0.00 3.91
2433 4550 8.627208 TTCTTCTGATCTTCTAATTTGCTTGT 57.373 30.769 0.00 0.00 0.00 3.16
2434 4551 8.627208 TCTTCTGATCTTCTAATTTGCTTGTT 57.373 30.769 0.00 0.00 0.00 2.83
2435 4552 9.071276 TCTTCTGATCTTCTAATTTGCTTGTTT 57.929 29.630 0.00 0.00 0.00 2.83
2450 4567 7.593875 TTGCTTGTTTAATTAACATCCATGC 57.406 32.000 0.00 7.17 45.72 4.06
2451 4568 6.934056 TGCTTGTTTAATTAACATCCATGCT 58.066 32.000 16.46 0.00 45.72 3.79
2452 4569 8.060931 TGCTTGTTTAATTAACATCCATGCTA 57.939 30.769 16.46 7.85 45.72 3.49
2453 4570 8.694540 TGCTTGTTTAATTAACATCCATGCTAT 58.305 29.630 16.46 0.00 45.72 2.97
2454 4571 8.971321 GCTTGTTTAATTAACATCCATGCTATG 58.029 33.333 0.00 5.08 45.72 2.23
2457 4574 9.800433 TGTTTAATTAACATCCATGCTATGTTG 57.200 29.630 24.12 5.83 44.94 3.33
2458 4575 9.248291 GTTTAATTAACATCCATGCTATGTTGG 57.752 33.333 24.12 0.00 44.94 3.77
2459 4576 4.916983 TTAACATCCATGCTATGTTGGC 57.083 40.909 24.12 0.00 44.94 4.52
2460 4577 1.311859 ACATCCATGCTATGTTGGCG 58.688 50.000 6.19 0.00 33.83 5.69
2461 4578 1.311859 CATCCATGCTATGTTGGCGT 58.688 50.000 0.00 0.00 32.80 5.68
2462 4579 1.265095 CATCCATGCTATGTTGGCGTC 59.735 52.381 0.00 0.00 32.80 5.19
2463 4580 0.541392 TCCATGCTATGTTGGCGTCT 59.459 50.000 0.00 0.00 32.80 4.18
2464 4581 1.065491 TCCATGCTATGTTGGCGTCTT 60.065 47.619 0.00 0.00 32.80 3.01
2465 4582 1.064505 CCATGCTATGTTGGCGTCTTG 59.935 52.381 0.00 0.00 0.00 3.02
2466 4583 1.064505 CATGCTATGTTGGCGTCTTGG 59.935 52.381 0.00 0.00 0.00 3.61
2467 4584 0.323302 TGCTATGTTGGCGTCTTGGA 59.677 50.000 0.00 0.00 0.00 3.53
2468 4585 0.727398 GCTATGTTGGCGTCTTGGAC 59.273 55.000 0.00 0.00 0.00 4.02
2469 4586 1.676014 GCTATGTTGGCGTCTTGGACT 60.676 52.381 0.00 0.00 0.00 3.85
2470 4587 2.418197 GCTATGTTGGCGTCTTGGACTA 60.418 50.000 0.00 0.00 0.00 2.59
2471 4588 2.851263 ATGTTGGCGTCTTGGACTAA 57.149 45.000 0.00 0.00 0.00 2.24
2472 4589 1.873698 TGTTGGCGTCTTGGACTAAC 58.126 50.000 0.00 0.00 0.00 2.34
2473 4590 1.154197 GTTGGCGTCTTGGACTAACC 58.846 55.000 0.00 0.00 39.54 2.85
2474 4591 0.320073 TTGGCGTCTTGGACTAACCG 60.320 55.000 0.00 0.00 42.61 4.44
2475 4592 2.098831 GGCGTCTTGGACTAACCGC 61.099 63.158 0.00 0.00 42.61 5.68
2476 4593 1.373748 GCGTCTTGGACTAACCGCA 60.374 57.895 0.00 0.00 42.61 5.69
2477 4594 1.623973 GCGTCTTGGACTAACCGCAC 61.624 60.000 0.00 0.00 42.61 5.34
2478 4595 1.342082 CGTCTTGGACTAACCGCACG 61.342 60.000 0.00 0.00 42.61 5.34
2479 4596 1.012486 GTCTTGGACTAACCGCACGG 61.012 60.000 7.71 7.71 42.61 4.94
2480 4597 1.180456 TCTTGGACTAACCGCACGGA 61.180 55.000 17.40 0.00 42.61 4.69
2481 4598 0.108329 CTTGGACTAACCGCACGGAT 60.108 55.000 17.40 6.58 42.61 4.18
2482 4599 0.108520 TTGGACTAACCGCACGGATC 60.109 55.000 17.40 7.38 42.61 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.209788 TGTCACGGACATAAGTATGGCATATA 59.790 38.462 10.92 0.17 43.61 0.86
42 43 2.550978 GACCCATACCTCAATGTCACG 58.449 52.381 0.00 0.00 0.00 4.35
51 52 3.195825 CCGATCAATAGGACCCATACCTC 59.804 52.174 0.00 0.00 38.76 3.85
70 71 3.673484 GTGGGTTCGACGGTCCGA 61.673 66.667 20.51 0.70 36.70 4.55
72 73 2.875804 AAGGTGGGTTCGACGGTCC 61.876 63.158 1.91 0.00 0.00 4.46
88 89 7.412781 GCATCTCTACAGTTCACTGAATTCAAG 60.413 40.741 14.00 5.46 46.59 3.02
91 92 6.105333 AGCATCTCTACAGTTCACTGAATTC 58.895 40.000 14.00 0.00 46.59 2.17
141 144 9.686683 ACTATTGCCCAAAATCAGGTATATATC 57.313 33.333 0.00 0.00 0.00 1.63
145 148 9.702253 TTTTACTATTGCCCAAAATCAGGTATA 57.298 29.630 0.00 0.00 0.00 1.47
146 149 8.602472 TTTTACTATTGCCCAAAATCAGGTAT 57.398 30.769 0.00 0.00 0.00 2.73
148 151 6.926630 TTTTACTATTGCCCAAAATCAGGT 57.073 33.333 0.00 0.00 0.00 4.00
175 187 2.628657 GACTCCAGGTGTTCACTGTAGT 59.371 50.000 0.00 0.00 37.77 2.73
201 213 1.137086 AGGTGGTGCTATAGCTTGTCG 59.863 52.381 24.61 0.00 42.66 4.35
205 217 5.828328 GGAATTAAAGGTGGTGCTATAGCTT 59.172 40.000 24.61 11.59 42.66 3.74
206 218 5.132816 AGGAATTAAAGGTGGTGCTATAGCT 59.867 40.000 24.61 5.26 42.66 3.32
207 219 5.377478 AGGAATTAAAGGTGGTGCTATAGC 58.623 41.667 18.18 18.18 42.50 2.97
208 220 6.831976 AGAGGAATTAAAGGTGGTGCTATAG 58.168 40.000 0.00 0.00 0.00 1.31
209 221 6.824958 AGAGGAATTAAAGGTGGTGCTATA 57.175 37.500 0.00 0.00 0.00 1.31
210 222 5.717119 AGAGGAATTAAAGGTGGTGCTAT 57.283 39.130 0.00 0.00 0.00 2.97
211 223 6.630203 TTAGAGGAATTAAAGGTGGTGCTA 57.370 37.500 0.00 0.00 0.00 3.49
224 236 7.489239 AGCTAGTCTCAGTTTTAGAGGAATT 57.511 36.000 0.00 0.00 33.92 2.17
257 275 6.016777 TCTCTGGTTTGAAGCAAAAAGATCTC 60.017 38.462 0.00 0.00 35.03 2.75
262 280 4.500375 CCCTCTCTGGTTTGAAGCAAAAAG 60.500 45.833 0.00 0.00 35.03 2.27
264 282 2.958355 CCCTCTCTGGTTTGAAGCAAAA 59.042 45.455 0.00 0.00 35.03 2.44
271 289 2.231380 GGGGCCCTCTCTGGTTTGA 61.231 63.158 24.38 0.00 0.00 2.69
290 311 7.307989 CCCCGTTATTAGCATGAAATAAGAGTG 60.308 40.741 11.74 5.42 31.27 3.51
319 340 2.277084 AGAATAAATCGGTGCACGTCC 58.723 47.619 11.45 0.00 44.69 4.79
321 342 3.596214 AGAAGAATAAATCGGTGCACGT 58.404 40.909 11.45 0.00 44.69 4.49
323 344 6.378582 TCAAAAGAAGAATAAATCGGTGCAC 58.621 36.000 8.80 8.80 0.00 4.57
374 395 1.798813 GTAGCTTGTGGACAGGAAACG 59.201 52.381 0.00 0.00 0.00 3.60
389 410 5.772825 TGTGCTTTTGAAGATTTGTAGCT 57.227 34.783 0.00 0.00 0.00 3.32
422 443 3.795150 GCGACAACAACCACATCAACAAT 60.795 43.478 0.00 0.00 0.00 2.71
457 479 1.569479 GGACAGCACGTTCTCCTTGC 61.569 60.000 0.00 0.00 36.45 4.01
472 494 2.434428 GAGTTAGAGTGGTCTCGGACA 58.566 52.381 6.41 0.00 44.65 4.02
473 495 1.744522 GGAGTTAGAGTGGTCTCGGAC 59.255 57.143 0.00 0.00 44.65 4.79
501 527 3.316071 AGCATGAGACTGTCACTCAAG 57.684 47.619 10.88 4.45 45.44 3.02
578 631 5.377478 GGATCGAATTGTCTCCCCTAAATT 58.623 41.667 0.00 0.00 0.00 1.82
595 648 1.348064 AAAGGACACAGTGGGATCGA 58.652 50.000 0.00 0.00 0.00 3.59
596 649 3.198068 CATAAAGGACACAGTGGGATCG 58.802 50.000 0.00 0.00 0.00 3.69
627 680 8.362464 AGTGATATGGAGAAAGTGTTACAGTA 57.638 34.615 0.00 0.00 0.00 2.74
631 684 6.879400 AGGAGTGATATGGAGAAAGTGTTAC 58.121 40.000 0.00 0.00 0.00 2.50
632 685 6.183360 CGAGGAGTGATATGGAGAAAGTGTTA 60.183 42.308 0.00 0.00 0.00 2.41
633 686 5.394663 CGAGGAGTGATATGGAGAAAGTGTT 60.395 44.000 0.00 0.00 0.00 3.32
635 688 4.615949 CGAGGAGTGATATGGAGAAAGTG 58.384 47.826 0.00 0.00 0.00 3.16
818 2737 6.458232 TGCCGCTTATAATTTGGTAATGTT 57.542 33.333 0.00 0.00 0.00 2.71
907 2827 1.949525 GCAAGCTGGTTTGAGAGTGAA 59.050 47.619 1.53 0.00 0.00 3.18
1155 3082 5.503634 TCTCCTGATTTTCCACAATGAGA 57.496 39.130 0.00 0.00 0.00 3.27
1259 3192 4.350368 TCAAACTGTGCTAGATGGTGAA 57.650 40.909 0.00 0.00 0.00 3.18
1320 3253 1.511305 GTCGCTGAAGATCGGGTGA 59.489 57.895 0.00 0.00 0.00 4.02
1372 3305 5.333187 GCTCATCTTCATCATCGTCATTGTC 60.333 44.000 0.00 0.00 0.00 3.18
1375 3308 4.063689 GGCTCATCTTCATCATCGTCATT 58.936 43.478 0.00 0.00 0.00 2.57
1405 3338 2.099756 GGTTGCTCCTAATTGCATCCAC 59.900 50.000 9.57 0.00 44.21 4.02
1416 3349 1.081092 AGCCTCCTGGTTGCTCCTA 59.919 57.895 6.85 0.00 37.07 2.94
1480 3413 5.411361 CACGGAACCTTCTGATGAACATTTA 59.589 40.000 0.70 0.00 37.03 1.40
1526 3459 7.227156 AGGTACATATGGAATGAAACCTCATC 58.773 38.462 7.80 0.00 41.66 2.92
1562 3495 6.381994 CCCTAGTGTCACCTATTTAGTGGTAA 59.618 42.308 0.00 0.00 35.87 2.85
1586 3519 2.822561 TCTATGGCATCGATCTCACTCC 59.177 50.000 1.65 0.00 0.00 3.85
1635 3589 3.715495 GTGAAAATGGACACACATGCAA 58.285 40.909 0.00 0.00 37.05 4.08
1638 3592 3.894782 TCGTGAAAATGGACACACATG 57.105 42.857 0.00 0.00 36.91 3.21
1639 3593 4.635765 CCTATCGTGAAAATGGACACACAT 59.364 41.667 0.00 0.00 36.91 3.21
1640 3594 4.000325 CCTATCGTGAAAATGGACACACA 59.000 43.478 0.00 0.00 36.91 3.72
1641 3595 4.250464 TCCTATCGTGAAAATGGACACAC 58.750 43.478 0.00 0.00 36.91 3.82
1673 3627 4.368565 AAACTTCTAACTTGGGACTCCC 57.631 45.455 7.25 7.25 45.71 4.30
1764 3722 9.705290 TTTTTCTTTCAGTTTTGCTAAAGTTCT 57.295 25.926 0.00 0.00 32.15 3.01
1766 3724 9.267084 TGTTTTTCTTTCAGTTTTGCTAAAGTT 57.733 25.926 0.00 0.00 32.15 2.66
1803 3915 9.822185 AACAATTTAGAAAAAGATTTGCAGTCT 57.178 25.926 0.00 0.00 0.00 3.24
1846 3963 7.476540 TTTAGTAGCTGTGGAACTCAAGATA 57.523 36.000 0.00 0.00 38.04 1.98
1882 3999 9.515020 CTTTTCTAGATAGTATATGCTAGCAGC 57.485 37.037 23.89 12.64 42.82 5.25
1911 4028 2.250921 TTACGGGTGGAGGGTAATCA 57.749 50.000 0.00 0.00 0.00 2.57
1929 4046 3.617284 CGGCTAACCAAAGTAGGGATTT 58.383 45.455 0.00 0.00 34.57 2.17
1941 4058 0.037590 ACATTGAAGCCGGCTAACCA 59.962 50.000 33.07 24.31 34.57 3.67
1956 4073 1.382522 CGGGCTAGCATCAACACATT 58.617 50.000 18.24 0.00 0.00 2.71
1977 4094 5.209977 CGATCTTGATGCAACCATTGTATG 58.790 41.667 0.00 0.00 36.07 2.39
1991 4108 1.700042 GGTCCTGCCCCGATCTTGAT 61.700 60.000 0.00 0.00 0.00 2.57
2033 4150 3.435030 TTTCGGCCGTCGGGATAGC 62.435 63.158 27.15 0.00 39.77 2.97
2034 4151 1.590792 GTTTCGGCCGTCGGGATAG 60.591 63.158 27.15 0.00 39.77 2.08
2035 4152 1.886253 TTGTTTCGGCCGTCGGGATA 61.886 55.000 27.15 0.00 39.77 2.59
2036 4153 2.530958 ATTGTTTCGGCCGTCGGGAT 62.531 55.000 27.15 12.32 39.77 3.85
2037 4154 1.886253 TATTGTTTCGGCCGTCGGGA 61.886 55.000 27.15 10.39 39.77 5.14
2038 4155 1.448189 TATTGTTTCGGCCGTCGGG 60.448 57.895 27.15 0.00 39.77 5.14
2039 4156 1.698714 GGTATTGTTTCGGCCGTCGG 61.699 60.000 27.15 6.99 39.77 4.79
2040 4157 1.015085 TGGTATTGTTTCGGCCGTCG 61.015 55.000 27.15 0.00 40.90 5.12
2041 4158 1.135888 GTTGGTATTGTTTCGGCCGTC 60.136 52.381 27.15 16.95 0.00 4.79
2042 4159 0.876399 GTTGGTATTGTTTCGGCCGT 59.124 50.000 27.15 7.03 0.00 5.68
2043 4160 0.875728 TGTTGGTATTGTTTCGGCCG 59.124 50.000 22.12 22.12 0.00 6.13
2044 4161 1.402325 GCTGTTGGTATTGTTTCGGCC 60.402 52.381 0.00 0.00 0.00 6.13
2045 4162 1.727857 CGCTGTTGGTATTGTTTCGGC 60.728 52.381 0.00 0.00 0.00 5.54
2046 4163 1.727857 GCGCTGTTGGTATTGTTTCGG 60.728 52.381 0.00 0.00 0.00 4.30
2047 4164 1.602191 GCGCTGTTGGTATTGTTTCG 58.398 50.000 0.00 0.00 0.00 3.46
2048 4165 1.402325 GGGCGCTGTTGGTATTGTTTC 60.402 52.381 7.64 0.00 0.00 2.78
2049 4166 0.601057 GGGCGCTGTTGGTATTGTTT 59.399 50.000 7.64 0.00 0.00 2.83
2050 4167 1.582610 CGGGCGCTGTTGGTATTGTT 61.583 55.000 7.64 0.00 0.00 2.83
2051 4168 2.038269 CGGGCGCTGTTGGTATTGT 61.038 57.895 7.64 0.00 0.00 2.71
2052 4169 1.977594 GACGGGCGCTGTTGGTATTG 61.978 60.000 7.64 0.00 0.00 1.90
2053 4170 1.743995 GACGGGCGCTGTTGGTATT 60.744 57.895 7.64 0.00 0.00 1.89
2054 4171 2.125269 GACGGGCGCTGTTGGTAT 60.125 61.111 7.64 0.00 0.00 2.73
2055 4172 3.583276 CTGACGGGCGCTGTTGGTA 62.583 63.158 7.64 0.00 0.00 3.25
2056 4173 4.988598 CTGACGGGCGCTGTTGGT 62.989 66.667 7.64 0.00 0.00 3.67
2061 4178 3.740128 AATAGGCTGACGGGCGCTG 62.740 63.158 7.64 2.40 45.89 5.18
2062 4179 3.447025 GAATAGGCTGACGGGCGCT 62.447 63.158 7.64 0.00 45.89 5.92
2063 4180 2.967615 GAATAGGCTGACGGGCGC 60.968 66.667 0.00 0.00 45.89 6.53
2064 4181 1.592669 CTGAATAGGCTGACGGGCG 60.593 63.158 0.00 0.00 45.89 6.13
2065 4182 0.249657 CTCTGAATAGGCTGACGGGC 60.250 60.000 0.00 0.00 41.20 6.13
2066 4183 0.249657 GCTCTGAATAGGCTGACGGG 60.250 60.000 0.00 0.00 0.00 5.28
2067 4184 0.749649 AGCTCTGAATAGGCTGACGG 59.250 55.000 0.00 0.00 34.82 4.79
2068 4185 3.573598 CATAGCTCTGAATAGGCTGACG 58.426 50.000 0.00 0.00 37.50 4.35
2069 4186 3.324993 GCATAGCTCTGAATAGGCTGAC 58.675 50.000 2.78 0.00 37.50 3.51
2070 4187 2.301296 GGCATAGCTCTGAATAGGCTGA 59.699 50.000 2.78 0.00 37.50 4.26
2071 4188 2.697654 GGCATAGCTCTGAATAGGCTG 58.302 52.381 2.78 0.00 37.50 4.85
2072 4189 1.274728 CGGCATAGCTCTGAATAGGCT 59.725 52.381 2.78 0.00 39.74 4.58
2073 4190 1.273606 TCGGCATAGCTCTGAATAGGC 59.726 52.381 2.78 0.00 0.00 3.93
2074 4191 2.297315 TGTCGGCATAGCTCTGAATAGG 59.703 50.000 2.78 0.00 0.00 2.57
2075 4192 3.650070 TGTCGGCATAGCTCTGAATAG 57.350 47.619 2.78 0.00 0.00 1.73
2076 4193 3.492656 GGTTGTCGGCATAGCTCTGAATA 60.493 47.826 2.78 0.00 0.00 1.75
2077 4194 2.555199 GTTGTCGGCATAGCTCTGAAT 58.445 47.619 2.78 0.00 0.00 2.57
2078 4195 1.405526 GGTTGTCGGCATAGCTCTGAA 60.406 52.381 2.78 0.00 0.00 3.02
2079 4196 0.175760 GGTTGTCGGCATAGCTCTGA 59.824 55.000 2.78 0.00 0.00 3.27
2080 4197 1.148157 CGGTTGTCGGCATAGCTCTG 61.148 60.000 0.00 0.00 34.75 3.35
2081 4198 1.141881 CGGTTGTCGGCATAGCTCT 59.858 57.895 0.00 0.00 34.75 4.09
2082 4199 3.706140 CGGTTGTCGGCATAGCTC 58.294 61.111 0.00 0.00 34.75 4.09
2092 4209 3.192103 AAGCCTGGACCCGGTTGTC 62.192 63.158 0.00 0.69 34.42 3.18
2093 4210 3.175710 AAGCCTGGACCCGGTTGT 61.176 61.111 0.00 0.00 0.00 3.32
2094 4211 2.359975 GAAGCCTGGACCCGGTTG 60.360 66.667 0.00 0.00 0.00 3.77
2095 4212 4.016706 CGAAGCCTGGACCCGGTT 62.017 66.667 0.00 0.00 0.00 4.44
2100 4217 3.081409 TAGCCCGAAGCCTGGACC 61.081 66.667 0.00 0.00 45.47 4.46
2101 4218 2.187163 GTAGCCCGAAGCCTGGAC 59.813 66.667 0.00 0.00 45.47 4.02
2102 4219 3.081409 GGTAGCCCGAAGCCTGGA 61.081 66.667 0.00 0.00 45.47 3.86
2103 4220 2.966732 TTGGTAGCCCGAAGCCTGG 61.967 63.158 0.00 0.00 45.47 4.45
2104 4221 1.745489 GTTGGTAGCCCGAAGCCTG 60.745 63.158 0.00 0.00 45.47 4.85
2105 4222 2.669240 GTTGGTAGCCCGAAGCCT 59.331 61.111 0.00 0.00 45.47 4.58
2106 4223 2.437895 GGTTGGTAGCCCGAAGCC 60.438 66.667 0.00 0.00 45.47 4.35
2114 4231 0.248289 TAACAGGCTCGGTTGGTAGC 59.752 55.000 0.80 0.00 38.03 3.58
2115 4232 1.822990 TCTAACAGGCTCGGTTGGTAG 59.177 52.381 0.80 0.00 36.22 3.18
2116 4233 1.822990 CTCTAACAGGCTCGGTTGGTA 59.177 52.381 0.80 0.00 0.00 3.25
2117 4234 0.608640 CTCTAACAGGCTCGGTTGGT 59.391 55.000 0.80 0.00 0.00 3.67
2118 4235 0.895530 TCTCTAACAGGCTCGGTTGG 59.104 55.000 0.80 0.00 0.00 3.77
2119 4236 1.546476 ACTCTCTAACAGGCTCGGTTG 59.454 52.381 0.80 0.00 0.00 3.77
2120 4237 1.926108 ACTCTCTAACAGGCTCGGTT 58.074 50.000 0.00 0.00 0.00 4.44
2121 4238 2.367486 GTACTCTCTAACAGGCTCGGT 58.633 52.381 0.00 0.00 0.00 4.69
2122 4239 1.331138 CGTACTCTCTAACAGGCTCGG 59.669 57.143 0.00 0.00 0.00 4.63
2123 4240 1.331138 CCGTACTCTCTAACAGGCTCG 59.669 57.143 0.00 0.00 0.00 5.03
2124 4241 1.677052 CCCGTACTCTCTAACAGGCTC 59.323 57.143 0.00 0.00 0.00 4.70
2125 4242 1.685491 CCCCGTACTCTCTAACAGGCT 60.685 57.143 0.00 0.00 0.00 4.58
2126 4243 0.745468 CCCCGTACTCTCTAACAGGC 59.255 60.000 0.00 0.00 0.00 4.85
2127 4244 0.745468 GCCCCGTACTCTCTAACAGG 59.255 60.000 0.00 0.00 0.00 4.00
2128 4245 0.381089 CGCCCCGTACTCTCTAACAG 59.619 60.000 0.00 0.00 0.00 3.16
2129 4246 0.322816 ACGCCCCGTACTCTCTAACA 60.323 55.000 0.00 0.00 38.73 2.41
2130 4247 0.813821 AACGCCCCGTACTCTCTAAC 59.186 55.000 0.00 0.00 39.99 2.34
2131 4248 1.098050 GAACGCCCCGTACTCTCTAA 58.902 55.000 0.00 0.00 39.99 2.10
2132 4249 1.091771 CGAACGCCCCGTACTCTCTA 61.092 60.000 0.00 0.00 39.99 2.43
2133 4250 2.404995 CGAACGCCCCGTACTCTCT 61.405 63.158 0.00 0.00 39.99 3.10
2134 4251 2.101770 CGAACGCCCCGTACTCTC 59.898 66.667 0.00 0.00 39.99 3.20
2135 4252 4.125695 GCGAACGCCCCGTACTCT 62.126 66.667 8.03 0.00 39.99 3.24
2136 4253 4.424566 TGCGAACGCCCCGTACTC 62.425 66.667 16.27 0.00 39.99 2.59
2137 4254 4.430765 CTGCGAACGCCCCGTACT 62.431 66.667 16.27 0.00 39.99 2.73
2145 4262 3.659089 TAAGGGAGGCTGCGAACGC 62.659 63.158 12.33 12.33 42.35 4.84
2146 4263 1.519455 CTAAGGGAGGCTGCGAACG 60.519 63.158 0.00 0.00 0.00 3.95
2147 4264 1.815840 GCTAAGGGAGGCTGCGAAC 60.816 63.158 0.00 0.00 0.00 3.95
2148 4265 2.584608 GCTAAGGGAGGCTGCGAA 59.415 61.111 0.00 0.00 0.00 4.70
2155 4272 3.866582 CTGGCGGGCTAAGGGAGG 61.867 72.222 2.38 0.00 0.00 4.30
2156 4273 4.554036 GCTGGCGGGCTAAGGGAG 62.554 72.222 2.38 0.00 0.00 4.30
2158 4275 4.195334 ATGCTGGCGGGCTAAGGG 62.195 66.667 2.38 0.00 0.00 3.95
2159 4276 2.903855 CATGCTGGCGGGCTAAGG 60.904 66.667 2.38 0.00 0.00 2.69
2160 4277 1.750399 AACATGCTGGCGGGCTAAG 60.750 57.895 2.38 0.00 0.00 2.18
2161 4278 2.045708 CAACATGCTGGCGGGCTAA 61.046 57.895 2.38 0.00 0.00 3.09
2162 4279 1.904990 TACAACATGCTGGCGGGCTA 61.905 55.000 2.38 0.00 0.00 3.93
2163 4280 2.762969 TTACAACATGCTGGCGGGCT 62.763 55.000 2.38 0.00 0.00 5.19
2164 4281 2.270297 CTTACAACATGCTGGCGGGC 62.270 60.000 0.45 0.00 0.00 6.13
2165 4282 0.960364 ACTTACAACATGCTGGCGGG 60.960 55.000 0.45 0.00 0.00 6.13
2166 4283 1.396996 GTACTTACAACATGCTGGCGG 59.603 52.381 0.45 0.00 0.00 6.13
2167 4284 2.346803 AGTACTTACAACATGCTGGCG 58.653 47.619 0.45 0.00 0.00 5.69
2168 4285 3.127030 GGAAGTACTTACAACATGCTGGC 59.873 47.826 13.26 0.00 0.00 4.85
2169 4286 3.689649 GGGAAGTACTTACAACATGCTGG 59.310 47.826 19.55 0.00 0.00 4.85
2170 4287 3.689649 GGGGAAGTACTTACAACATGCTG 59.310 47.826 19.55 0.00 0.00 4.41
2171 4288 3.308188 GGGGGAAGTACTTACAACATGCT 60.308 47.826 19.55 0.00 0.00 3.79
2172 4289 3.014623 GGGGGAAGTACTTACAACATGC 58.985 50.000 19.55 0.74 0.00 4.06
2173 4290 4.569719 AGGGGGAAGTACTTACAACATG 57.430 45.455 19.55 0.00 0.00 3.21
2174 4291 6.677076 AGATAAGGGGGAAGTACTTACAACAT 59.323 38.462 19.55 6.64 30.33 2.71
2175 4292 6.027482 AGATAAGGGGGAAGTACTTACAACA 58.973 40.000 19.55 0.23 30.33 3.33
2176 4293 6.556974 AGATAAGGGGGAAGTACTTACAAC 57.443 41.667 19.55 11.16 30.33 3.32
2177 4294 6.964086 AGAAGATAAGGGGGAAGTACTTACAA 59.036 38.462 19.55 0.00 30.33 2.41
2178 4295 6.509386 AGAAGATAAGGGGGAAGTACTTACA 58.491 40.000 19.55 0.00 30.33 2.41
2179 4296 7.434927 AAGAAGATAAGGGGGAAGTACTTAC 57.565 40.000 9.56 9.56 30.33 2.34
2180 4297 7.905106 AGAAAGAAGATAAGGGGGAAGTACTTA 59.095 37.037 8.42 0.00 0.00 2.24
2181 4298 6.736179 AGAAAGAAGATAAGGGGGAAGTACTT 59.264 38.462 8.13 8.13 0.00 2.24
2182 4299 6.273104 AGAAAGAAGATAAGGGGGAAGTACT 58.727 40.000 0.00 0.00 0.00 2.73
2183 4300 6.384595 AGAGAAAGAAGATAAGGGGGAAGTAC 59.615 42.308 0.00 0.00 0.00 2.73
2184 4301 6.513033 AGAGAAAGAAGATAAGGGGGAAGTA 58.487 40.000 0.00 0.00 0.00 2.24
2185 4302 5.354848 AGAGAAAGAAGATAAGGGGGAAGT 58.645 41.667 0.00 0.00 0.00 3.01
2186 4303 5.665360 AGAGAGAAAGAAGATAAGGGGGAAG 59.335 44.000 0.00 0.00 0.00 3.46
2187 4304 5.604752 AGAGAGAAAGAAGATAAGGGGGAA 58.395 41.667 0.00 0.00 0.00 3.97
2188 4305 5.227917 AGAGAGAAAGAAGATAAGGGGGA 57.772 43.478 0.00 0.00 0.00 4.81
2189 4306 6.183361 GGTTAGAGAGAAAGAAGATAAGGGGG 60.183 46.154 0.00 0.00 0.00 5.40
2190 4307 6.613679 AGGTTAGAGAGAAAGAAGATAAGGGG 59.386 42.308 0.00 0.00 0.00 4.79
2191 4308 7.669089 AGGTTAGAGAGAAAGAAGATAAGGG 57.331 40.000 0.00 0.00 0.00 3.95
2192 4309 8.977412 AGAAGGTTAGAGAGAAAGAAGATAAGG 58.023 37.037 0.00 0.00 0.00 2.69
2194 4311 9.535170 TGAGAAGGTTAGAGAGAAAGAAGATAA 57.465 33.333 0.00 0.00 0.00 1.75
2195 4312 9.184523 CTGAGAAGGTTAGAGAGAAAGAAGATA 57.815 37.037 0.00 0.00 0.00 1.98
2196 4313 7.673926 ACTGAGAAGGTTAGAGAGAAAGAAGAT 59.326 37.037 0.00 0.00 0.00 2.40
2197 4314 7.007723 ACTGAGAAGGTTAGAGAGAAAGAAGA 58.992 38.462 0.00 0.00 0.00 2.87
2198 4315 7.227049 ACTGAGAAGGTTAGAGAGAAAGAAG 57.773 40.000 0.00 0.00 0.00 2.85
2199 4316 7.604657 AACTGAGAAGGTTAGAGAGAAAGAA 57.395 36.000 0.00 0.00 0.00 2.52
2200 4317 7.604657 AAACTGAGAAGGTTAGAGAGAAAGA 57.395 36.000 0.00 0.00 0.00 2.52
2201 4318 9.936759 AATAAACTGAGAAGGTTAGAGAGAAAG 57.063 33.333 0.00 0.00 0.00 2.62
2204 4321 9.930693 GAAAATAAACTGAGAAGGTTAGAGAGA 57.069 33.333 0.00 0.00 0.00 3.10
2205 4322 9.712305 TGAAAATAAACTGAGAAGGTTAGAGAG 57.288 33.333 0.00 0.00 0.00 3.20
2206 4323 9.712305 CTGAAAATAAACTGAGAAGGTTAGAGA 57.288 33.333 0.00 0.00 0.00 3.10
2207 4324 8.447053 GCTGAAAATAAACTGAGAAGGTTAGAG 58.553 37.037 0.00 0.00 0.00 2.43
2208 4325 7.936847 TGCTGAAAATAAACTGAGAAGGTTAGA 59.063 33.333 0.00 0.00 0.00 2.10
2209 4326 8.099364 TGCTGAAAATAAACTGAGAAGGTTAG 57.901 34.615 0.00 0.00 0.00 2.34
2210 4327 8.635765 ATGCTGAAAATAAACTGAGAAGGTTA 57.364 30.769 0.00 0.00 0.00 2.85
2211 4328 6.959639 TGCTGAAAATAAACTGAGAAGGTT 57.040 33.333 0.00 0.00 0.00 3.50
2212 4329 7.373493 CAATGCTGAAAATAAACTGAGAAGGT 58.627 34.615 0.00 0.00 0.00 3.50
2213 4330 6.309737 GCAATGCTGAAAATAAACTGAGAAGG 59.690 38.462 0.00 0.00 0.00 3.46
2214 4331 6.309737 GGCAATGCTGAAAATAAACTGAGAAG 59.690 38.462 4.82 0.00 0.00 2.85
2215 4332 6.158598 GGCAATGCTGAAAATAAACTGAGAA 58.841 36.000 4.82 0.00 0.00 2.87
2216 4333 5.336690 GGGCAATGCTGAAAATAAACTGAGA 60.337 40.000 4.82 0.00 0.00 3.27
2217 4334 4.866486 GGGCAATGCTGAAAATAAACTGAG 59.134 41.667 4.82 0.00 0.00 3.35
2218 4335 4.282957 TGGGCAATGCTGAAAATAAACTGA 59.717 37.500 4.82 0.00 0.00 3.41
2219 4336 4.389687 GTGGGCAATGCTGAAAATAAACTG 59.610 41.667 4.82 0.00 0.00 3.16
2220 4337 4.284234 AGTGGGCAATGCTGAAAATAAACT 59.716 37.500 4.82 0.00 0.00 2.66
2221 4338 4.568956 AGTGGGCAATGCTGAAAATAAAC 58.431 39.130 4.82 0.00 0.00 2.01
2222 4339 4.888326 AGTGGGCAATGCTGAAAATAAA 57.112 36.364 4.82 0.00 0.00 1.40
2223 4340 4.888326 AAGTGGGCAATGCTGAAAATAA 57.112 36.364 4.82 0.00 0.00 1.40
2224 4341 5.260424 TCTAAGTGGGCAATGCTGAAAATA 58.740 37.500 4.82 0.00 0.00 1.40
2225 4342 4.088634 TCTAAGTGGGCAATGCTGAAAAT 58.911 39.130 4.82 0.00 0.00 1.82
2226 4343 3.495331 TCTAAGTGGGCAATGCTGAAAA 58.505 40.909 4.82 0.00 0.00 2.29
2227 4344 3.153369 TCTAAGTGGGCAATGCTGAAA 57.847 42.857 4.82 0.00 0.00 2.69
2228 4345 2.877097 TCTAAGTGGGCAATGCTGAA 57.123 45.000 4.82 0.00 0.00 3.02
2229 4346 2.819608 GTTTCTAAGTGGGCAATGCTGA 59.180 45.455 4.82 0.00 0.00 4.26
2230 4347 2.557924 TGTTTCTAAGTGGGCAATGCTG 59.442 45.455 4.82 0.00 0.00 4.41
2231 4348 2.875296 TGTTTCTAAGTGGGCAATGCT 58.125 42.857 4.82 0.00 0.00 3.79
2232 4349 3.317150 GTTGTTTCTAAGTGGGCAATGC 58.683 45.455 0.00 0.00 0.00 3.56
2233 4350 3.573967 AGGTTGTTTCTAAGTGGGCAATG 59.426 43.478 0.00 0.00 0.00 2.82
2234 4351 3.844640 AGGTTGTTTCTAAGTGGGCAAT 58.155 40.909 0.00 0.00 0.00 3.56
2235 4352 3.306472 AGGTTGTTTCTAAGTGGGCAA 57.694 42.857 0.00 0.00 0.00 4.52
2236 4353 4.440826 TTAGGTTGTTTCTAAGTGGGCA 57.559 40.909 0.00 0.00 0.00 5.36
2237 4354 5.977489 AATTAGGTTGTTTCTAAGTGGGC 57.023 39.130 0.00 0.00 31.26 5.36
2267 4384 3.381272 TGCTTGACAAAGGCCTTATATGC 59.619 43.478 20.84 17.85 33.68 3.14
2268 4385 5.779529 ATGCTTGACAAAGGCCTTATATG 57.220 39.130 20.84 16.36 33.68 1.78
2269 4386 6.006449 CCTATGCTTGACAAAGGCCTTATAT 58.994 40.000 20.84 7.14 33.68 0.86
2270 4387 5.131977 TCCTATGCTTGACAAAGGCCTTATA 59.868 40.000 20.84 9.20 33.68 0.98
2271 4388 4.079787 TCCTATGCTTGACAAAGGCCTTAT 60.080 41.667 20.84 10.54 33.68 1.73
2272 4389 3.265737 TCCTATGCTTGACAAAGGCCTTA 59.734 43.478 20.84 0.00 33.68 2.69
2273 4390 2.041620 TCCTATGCTTGACAAAGGCCTT 59.958 45.455 13.78 13.78 33.68 4.35
2274 4391 1.635487 TCCTATGCTTGACAAAGGCCT 59.365 47.619 0.00 0.00 33.68 5.19
2275 4392 2.128771 TCCTATGCTTGACAAAGGCC 57.871 50.000 0.00 0.00 33.68 5.19
2276 4393 3.950395 AGATTCCTATGCTTGACAAAGGC 59.050 43.478 0.00 0.00 33.68 4.35
2277 4394 5.188434 TGAGATTCCTATGCTTGACAAAGG 58.812 41.667 0.00 0.00 33.68 3.11
2278 4395 6.183360 CCTTGAGATTCCTATGCTTGACAAAG 60.183 42.308 0.00 0.00 36.41 2.77
2279 4396 5.649395 CCTTGAGATTCCTATGCTTGACAAA 59.351 40.000 0.00 0.00 0.00 2.83
2280 4397 5.188434 CCTTGAGATTCCTATGCTTGACAA 58.812 41.667 0.00 0.00 0.00 3.18
2281 4398 4.225942 ACCTTGAGATTCCTATGCTTGACA 59.774 41.667 0.00 0.00 0.00 3.58
2282 4399 4.574013 CACCTTGAGATTCCTATGCTTGAC 59.426 45.833 0.00 0.00 0.00 3.18
2283 4400 4.774124 CACCTTGAGATTCCTATGCTTGA 58.226 43.478 0.00 0.00 0.00 3.02
2284 4401 3.314635 GCACCTTGAGATTCCTATGCTTG 59.685 47.826 0.00 0.00 0.00 4.01
2285 4402 3.549794 GCACCTTGAGATTCCTATGCTT 58.450 45.455 0.00 0.00 0.00 3.91
2286 4403 2.484417 CGCACCTTGAGATTCCTATGCT 60.484 50.000 0.00 0.00 0.00 3.79
2287 4404 1.869767 CGCACCTTGAGATTCCTATGC 59.130 52.381 0.00 0.00 0.00 3.14
2288 4405 2.487934 CCGCACCTTGAGATTCCTATG 58.512 52.381 0.00 0.00 0.00 2.23
2289 4406 1.417890 CCCGCACCTTGAGATTCCTAT 59.582 52.381 0.00 0.00 0.00 2.57
2290 4407 0.830648 CCCGCACCTTGAGATTCCTA 59.169 55.000 0.00 0.00 0.00 2.94
2291 4408 0.909610 TCCCGCACCTTGAGATTCCT 60.910 55.000 0.00 0.00 0.00 3.36
2292 4409 0.462759 CTCCCGCACCTTGAGATTCC 60.463 60.000 0.00 0.00 0.00 3.01
2293 4410 0.250513 ACTCCCGCACCTTGAGATTC 59.749 55.000 0.00 0.00 0.00 2.52
2294 4411 1.207329 GTACTCCCGCACCTTGAGATT 59.793 52.381 0.00 0.00 0.00 2.40
2295 4412 0.824759 GTACTCCCGCACCTTGAGAT 59.175 55.000 0.00 0.00 0.00 2.75
2296 4413 0.251653 AGTACTCCCGCACCTTGAGA 60.252 55.000 0.00 0.00 0.00 3.27
2297 4414 0.608640 AAGTACTCCCGCACCTTGAG 59.391 55.000 0.00 0.00 0.00 3.02
2298 4415 0.320374 CAAGTACTCCCGCACCTTGA 59.680 55.000 0.00 0.00 35.64 3.02
2299 4416 1.298859 GCAAGTACTCCCGCACCTTG 61.299 60.000 0.00 0.00 36.47 3.61
2300 4417 1.003718 GCAAGTACTCCCGCACCTT 60.004 57.895 0.00 0.00 0.00 3.50
2301 4418 1.764571 TTGCAAGTACTCCCGCACCT 61.765 55.000 12.61 0.00 33.29 4.00
2302 4419 1.302192 TTGCAAGTACTCCCGCACC 60.302 57.895 12.61 0.00 33.29 5.01
2303 4420 1.866925 GTTGCAAGTACTCCCGCAC 59.133 57.895 12.61 6.46 33.29 5.34
2304 4421 1.666553 CGTTGCAAGTACTCCCGCA 60.667 57.895 0.00 9.76 0.00 5.69
2305 4422 1.352156 CTCGTTGCAAGTACTCCCGC 61.352 60.000 0.00 0.00 0.00 6.13
2306 4423 0.038526 ACTCGTTGCAAGTACTCCCG 60.039 55.000 0.00 0.00 0.00 5.14
2307 4424 3.308438 TTACTCGTTGCAAGTACTCCC 57.692 47.619 0.00 0.00 0.00 4.30
2308 4425 3.678548 CCTTTACTCGTTGCAAGTACTCC 59.321 47.826 0.00 0.00 0.00 3.85
2309 4426 3.123116 GCCTTTACTCGTTGCAAGTACTC 59.877 47.826 0.00 0.00 0.00 2.59
2310 4427 3.064931 GCCTTTACTCGTTGCAAGTACT 58.935 45.455 0.00 0.00 0.00 2.73
2311 4428 2.803956 TGCCTTTACTCGTTGCAAGTAC 59.196 45.455 0.00 0.00 0.00 2.73
2312 4429 3.114668 TGCCTTTACTCGTTGCAAGTA 57.885 42.857 0.00 0.00 0.00 2.24
2313 4430 1.961793 TGCCTTTACTCGTTGCAAGT 58.038 45.000 0.00 0.00 0.00 3.16
2314 4431 3.042887 GTTTGCCTTTACTCGTTGCAAG 58.957 45.455 0.00 0.00 42.25 4.01
2315 4432 2.539953 CGTTTGCCTTTACTCGTTGCAA 60.540 45.455 0.00 0.00 39.92 4.08
2316 4433 1.003331 CGTTTGCCTTTACTCGTTGCA 60.003 47.619 0.00 0.00 0.00 4.08
2317 4434 1.262151 TCGTTTGCCTTTACTCGTTGC 59.738 47.619 0.00 0.00 0.00 4.17
2318 4435 3.185594 TCATCGTTTGCCTTTACTCGTTG 59.814 43.478 0.00 0.00 0.00 4.10
2319 4436 3.395639 TCATCGTTTGCCTTTACTCGTT 58.604 40.909 0.00 0.00 0.00 3.85
2320 4437 3.034721 TCATCGTTTGCCTTTACTCGT 57.965 42.857 0.00 0.00 0.00 4.18
2321 4438 4.600012 AATCATCGTTTGCCTTTACTCG 57.400 40.909 0.00 0.00 0.00 4.18
2322 4439 6.417191 TGTAATCATCGTTTGCCTTTACTC 57.583 37.500 0.00 0.00 0.00 2.59
2323 4440 6.349033 GGTTGTAATCATCGTTTGCCTTTACT 60.349 38.462 0.00 0.00 0.00 2.24
2324 4441 5.798434 GGTTGTAATCATCGTTTGCCTTTAC 59.202 40.000 0.00 0.00 0.00 2.01
2325 4442 5.391097 CGGTTGTAATCATCGTTTGCCTTTA 60.391 40.000 0.00 0.00 0.00 1.85
2326 4443 4.614993 CGGTTGTAATCATCGTTTGCCTTT 60.615 41.667 0.00 0.00 0.00 3.11
2327 4444 3.119990 CGGTTGTAATCATCGTTTGCCTT 60.120 43.478 0.00 0.00 0.00 4.35
2328 4445 2.418628 CGGTTGTAATCATCGTTTGCCT 59.581 45.455 0.00 0.00 0.00 4.75
2329 4446 2.160813 ACGGTTGTAATCATCGTTTGCC 59.839 45.455 0.00 0.00 32.94 4.52
2330 4447 3.120477 TGACGGTTGTAATCATCGTTTGC 60.120 43.478 0.00 0.00 35.35 3.68
2331 4448 4.387559 TCTGACGGTTGTAATCATCGTTTG 59.612 41.667 0.00 0.00 35.35 2.93
2332 4449 4.562082 TCTGACGGTTGTAATCATCGTTT 58.438 39.130 0.00 0.00 35.35 3.60
2333 4450 4.182693 TCTGACGGTTGTAATCATCGTT 57.817 40.909 0.00 0.00 35.35 3.85
2334 4451 3.861276 TCTGACGGTTGTAATCATCGT 57.139 42.857 0.00 0.00 36.87 3.73
2335 4452 4.359706 TCATCTGACGGTTGTAATCATCG 58.640 43.478 0.00 0.00 0.00 3.84
2336 4453 5.985530 TCATCATCTGACGGTTGTAATCATC 59.014 40.000 0.00 0.00 0.00 2.92
2337 4454 5.755375 GTCATCATCTGACGGTTGTAATCAT 59.245 40.000 0.00 0.00 44.58 2.45
2338 4455 5.109210 GTCATCATCTGACGGTTGTAATCA 58.891 41.667 0.00 0.00 44.58 2.57
2339 4456 5.643339 GTCATCATCTGACGGTTGTAATC 57.357 43.478 0.00 0.00 44.58 1.75
2350 4467 4.391830 GCAAAACTAACCGTCATCATCTGA 59.608 41.667 0.00 0.00 0.00 3.27
2351 4468 4.437390 GGCAAAACTAACCGTCATCATCTG 60.437 45.833 0.00 0.00 0.00 2.90
2352 4469 3.689649 GGCAAAACTAACCGTCATCATCT 59.310 43.478 0.00 0.00 0.00 2.90
2353 4470 3.181500 GGGCAAAACTAACCGTCATCATC 60.181 47.826 0.00 0.00 0.00 2.92
2354 4471 2.752903 GGGCAAAACTAACCGTCATCAT 59.247 45.455 0.00 0.00 0.00 2.45
2355 4472 2.156098 GGGCAAAACTAACCGTCATCA 58.844 47.619 0.00 0.00 0.00 3.07
2356 4473 2.418976 GAGGGCAAAACTAACCGTCATC 59.581 50.000 0.00 0.00 38.07 2.92
2357 4474 2.039879 AGAGGGCAAAACTAACCGTCAT 59.960 45.455 0.00 0.00 40.10 3.06
2358 4475 1.418637 AGAGGGCAAAACTAACCGTCA 59.581 47.619 0.00 0.00 40.10 4.35
2359 4476 2.180432 AGAGGGCAAAACTAACCGTC 57.820 50.000 0.00 0.00 38.38 4.79
2360 4477 2.651382 AAGAGGGCAAAACTAACCGT 57.349 45.000 0.00 0.00 0.00 4.83
2361 4478 5.217393 GTTTTAAGAGGGCAAAACTAACCG 58.783 41.667 3.63 0.00 40.09 4.44
2362 4479 5.069383 TGGTTTTAAGAGGGCAAAACTAACC 59.931 40.000 9.18 0.00 41.94 2.85
2363 4480 6.151663 TGGTTTTAAGAGGGCAAAACTAAC 57.848 37.500 9.18 0.00 41.94 2.34
2364 4481 6.684362 GCTTGGTTTTAAGAGGGCAAAACTAA 60.684 38.462 9.18 8.60 41.94 2.24
2365 4482 5.221362 GCTTGGTTTTAAGAGGGCAAAACTA 60.221 40.000 9.18 2.19 41.94 2.24
2366 4483 4.442893 GCTTGGTTTTAAGAGGGCAAAACT 60.443 41.667 9.18 0.00 41.94 2.66
2367 4484 3.807622 GCTTGGTTTTAAGAGGGCAAAAC 59.192 43.478 2.48 2.48 41.67 2.43
2368 4485 3.709141 AGCTTGGTTTTAAGAGGGCAAAA 59.291 39.130 0.00 0.00 0.00 2.44
2369 4486 3.304829 AGCTTGGTTTTAAGAGGGCAAA 58.695 40.909 0.00 0.00 0.00 3.68
2370 4487 2.957474 AGCTTGGTTTTAAGAGGGCAA 58.043 42.857 0.00 0.00 0.00 4.52
2371 4488 2.675658 AGCTTGGTTTTAAGAGGGCA 57.324 45.000 0.00 0.00 0.00 5.36
2372 4489 5.661056 ATTTAGCTTGGTTTTAAGAGGGC 57.339 39.130 0.00 0.00 0.00 5.19
2373 4490 7.095229 GCAAAATTTAGCTTGGTTTTAAGAGGG 60.095 37.037 0.00 0.00 0.00 4.30
2374 4491 7.440856 TGCAAAATTTAGCTTGGTTTTAAGAGG 59.559 33.333 0.00 0.00 0.00 3.69
2375 4492 8.275632 GTGCAAAATTTAGCTTGGTTTTAAGAG 58.724 33.333 0.00 0.00 0.00 2.85
2376 4493 7.984617 AGTGCAAAATTTAGCTTGGTTTTAAGA 59.015 29.630 0.00 0.00 0.00 2.10
2377 4494 8.141835 AGTGCAAAATTTAGCTTGGTTTTAAG 57.858 30.769 0.00 0.00 0.00 1.85
2378 4495 8.499403 AAGTGCAAAATTTAGCTTGGTTTTAA 57.501 26.923 0.00 0.00 0.00 1.52
2379 4496 8.499403 AAAGTGCAAAATTTAGCTTGGTTTTA 57.501 26.923 0.00 0.00 0.00 1.52
2380 4497 7.120432 TGAAAGTGCAAAATTTAGCTTGGTTTT 59.880 29.630 0.00 0.00 0.00 2.43
2381 4498 6.597280 TGAAAGTGCAAAATTTAGCTTGGTTT 59.403 30.769 0.00 0.00 0.00 3.27
2382 4499 6.112058 TGAAAGTGCAAAATTTAGCTTGGTT 58.888 32.000 0.00 0.00 0.00 3.67
2383 4500 5.669477 TGAAAGTGCAAAATTTAGCTTGGT 58.331 33.333 0.00 0.00 0.00 3.67
2384 4501 6.790285 ATGAAAGTGCAAAATTTAGCTTGG 57.210 33.333 0.00 0.00 0.00 3.61
2385 4502 8.553696 AGAAATGAAAGTGCAAAATTTAGCTTG 58.446 29.630 0.00 0.00 0.00 4.01
2386 4503 8.667076 AGAAATGAAAGTGCAAAATTTAGCTT 57.333 26.923 0.00 0.00 0.00 3.74
2387 4504 8.667076 AAGAAATGAAAGTGCAAAATTTAGCT 57.333 26.923 0.00 0.00 0.00 3.32
2388 4505 8.768019 AGAAGAAATGAAAGTGCAAAATTTAGC 58.232 29.630 0.00 0.00 0.00 3.09
2390 4507 9.814899 TCAGAAGAAATGAAAGTGCAAAATTTA 57.185 25.926 0.00 0.00 0.00 1.40
2391 4508 8.721019 TCAGAAGAAATGAAAGTGCAAAATTT 57.279 26.923 0.00 0.00 0.00 1.82
2392 4509 8.897872 ATCAGAAGAAATGAAAGTGCAAAATT 57.102 26.923 0.00 0.00 0.00 1.82
2393 4510 8.365647 AGATCAGAAGAAATGAAAGTGCAAAAT 58.634 29.630 0.00 0.00 0.00 1.82
2394 4511 7.719483 AGATCAGAAGAAATGAAAGTGCAAAA 58.281 30.769 0.00 0.00 0.00 2.44
2395 4512 7.281040 AGATCAGAAGAAATGAAAGTGCAAA 57.719 32.000 0.00 0.00 0.00 3.68
2396 4513 6.889301 AGATCAGAAGAAATGAAAGTGCAA 57.111 33.333 0.00 0.00 0.00 4.08
2397 4514 6.713903 AGAAGATCAGAAGAAATGAAAGTGCA 59.286 34.615 0.00 0.00 0.00 4.57
2398 4515 7.143514 AGAAGATCAGAAGAAATGAAAGTGC 57.856 36.000 0.00 0.00 0.00 4.40
2404 4521 9.458727 AGCAAATTAGAAGATCAGAAGAAATGA 57.541 29.630 0.00 0.00 0.00 2.57
2407 4524 9.071276 ACAAGCAAATTAGAAGATCAGAAGAAA 57.929 29.630 0.00 0.00 0.00 2.52
2408 4525 8.627208 ACAAGCAAATTAGAAGATCAGAAGAA 57.373 30.769 0.00 0.00 0.00 2.52
2409 4526 8.627208 AACAAGCAAATTAGAAGATCAGAAGA 57.373 30.769 0.00 0.00 0.00 2.87
2431 4548 9.800433 CAACATAGCATGGATGTTAATTAAACA 57.200 29.630 0.00 1.63 43.91 2.83
2432 4549 9.248291 CCAACATAGCATGGATGTTAATTAAAC 57.752 33.333 0.00 0.00 43.91 2.01
2433 4550 7.925483 GCCAACATAGCATGGATGTTAATTAAA 59.075 33.333 0.00 0.00 43.91 1.52
2434 4551 7.432869 GCCAACATAGCATGGATGTTAATTAA 58.567 34.615 0.00 0.00 43.91 1.40
2435 4552 6.293900 CGCCAACATAGCATGGATGTTAATTA 60.294 38.462 0.00 0.00 43.91 1.40
2436 4553 5.507817 CGCCAACATAGCATGGATGTTAATT 60.508 40.000 0.00 0.00 43.91 1.40
2437 4554 4.022935 CGCCAACATAGCATGGATGTTAAT 60.023 41.667 0.00 0.00 43.91 1.40
2438 4555 3.314913 CGCCAACATAGCATGGATGTTAA 59.685 43.478 0.00 0.00 43.91 2.01
2439 4556 2.877786 CGCCAACATAGCATGGATGTTA 59.122 45.455 0.00 0.00 43.91 2.41
2440 4557 1.677576 CGCCAACATAGCATGGATGTT 59.322 47.619 0.00 0.00 46.07 2.71
2441 4558 1.311859 CGCCAACATAGCATGGATGT 58.688 50.000 0.00 0.00 39.12 3.06
2442 4559 1.265095 GACGCCAACATAGCATGGATG 59.735 52.381 0.00 0.00 39.12 3.51
2443 4560 1.141657 AGACGCCAACATAGCATGGAT 59.858 47.619 0.00 0.00 39.12 3.41
2444 4561 0.541392 AGACGCCAACATAGCATGGA 59.459 50.000 0.00 0.00 39.12 3.41
2445 4562 1.064505 CAAGACGCCAACATAGCATGG 59.935 52.381 0.00 0.00 39.80 3.66
2446 4563 1.064505 CCAAGACGCCAACATAGCATG 59.935 52.381 0.00 0.00 0.00 4.06
2447 4564 1.065491 TCCAAGACGCCAACATAGCAT 60.065 47.619 0.00 0.00 0.00 3.79
2448 4565 0.323302 TCCAAGACGCCAACATAGCA 59.677 50.000 0.00 0.00 0.00 3.49
2449 4566 0.727398 GTCCAAGACGCCAACATAGC 59.273 55.000 0.00 0.00 0.00 2.97
2450 4567 2.386661 AGTCCAAGACGCCAACATAG 57.613 50.000 0.00 0.00 37.67 2.23
2451 4568 3.592059 GTTAGTCCAAGACGCCAACATA 58.408 45.455 0.00 0.00 37.67 2.29
2452 4569 2.423577 GTTAGTCCAAGACGCCAACAT 58.576 47.619 0.00 0.00 37.67 2.71
2453 4570 1.541670 GGTTAGTCCAAGACGCCAACA 60.542 52.381 10.12 0.00 37.67 3.33
2454 4571 1.154197 GGTTAGTCCAAGACGCCAAC 58.846 55.000 0.00 0.00 37.67 3.77
2455 4572 0.320073 CGGTTAGTCCAAGACGCCAA 60.320 55.000 0.00 0.00 37.67 4.52
2456 4573 1.290955 CGGTTAGTCCAAGACGCCA 59.709 57.895 0.00 0.00 37.67 5.69
2457 4574 2.098831 GCGGTTAGTCCAAGACGCC 61.099 63.158 0.00 0.00 37.60 5.68
2458 4575 1.373748 TGCGGTTAGTCCAAGACGC 60.374 57.895 0.00 0.00 41.56 5.19
2459 4576 1.342082 CGTGCGGTTAGTCCAAGACG 61.342 60.000 0.00 0.00 37.67 4.18
2460 4577 1.012486 CCGTGCGGTTAGTCCAAGAC 61.012 60.000 1.93 0.00 35.57 3.01
2461 4578 1.180456 TCCGTGCGGTTAGTCCAAGA 61.180 55.000 10.60 0.00 36.47 3.02
2462 4579 0.108329 ATCCGTGCGGTTAGTCCAAG 60.108 55.000 10.60 0.00 36.47 3.61
2463 4580 0.108520 GATCCGTGCGGTTAGTCCAA 60.109 55.000 10.60 0.00 36.47 3.53
2464 4581 1.514087 GATCCGTGCGGTTAGTCCA 59.486 57.895 10.60 0.00 36.47 4.02
2465 4582 4.414732 GATCCGTGCGGTTAGTCC 57.585 61.111 10.60 0.00 36.47 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.