Multiple sequence alignment - TraesCS5A01G293300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G293300 chr5A 100.000 4919 0 0 1 4919 503060293 503055375 0.000000e+00 9084.0
1 TraesCS5A01G293300 chr5D 88.176 2867 249 46 2050 4873 397938129 397935310 0.000000e+00 3334.0
2 TraesCS5A01G293300 chr5D 89.818 1316 110 19 658 1965 397939413 397938114 0.000000e+00 1666.0
3 TraesCS5A01G293300 chr5D 91.791 134 10 1 2 135 397940034 397939902 8.410000e-43 185.0
4 TraesCS5A01G293300 chr5D 100.000 40 0 0 4870 4909 397935264 397935225 1.900000e-09 75.0
5 TraesCS5A01G293300 chr5B 89.377 2570 216 27 2050 4590 477981504 477978963 0.000000e+00 3181.0
6 TraesCS5A01G293300 chr5B 90.013 1542 130 18 438 1965 477983020 477981489 0.000000e+00 1973.0
7 TraesCS5A01G293300 chr5B 87.850 214 17 4 4618 4822 477978685 477978472 4.920000e-60 243.0
8 TraesCS5A01G293300 chr6D 73.750 320 73 11 2436 2749 75873031 75872717 1.120000e-21 115.0
9 TraesCS5A01G293300 chr6A 73.354 319 76 9 2436 2749 91885955 91885641 5.210000e-20 110.0
10 TraesCS5A01G293300 chr6B 72.727 319 78 9 2436 2749 149471541 149471227 1.130000e-16 99.0
11 TraesCS5A01G293300 chr3D 79.279 111 15 7 2894 3000 596666862 596666756 2.460000e-08 71.3
12 TraesCS5A01G293300 chr3B 79.279 111 15 7 2894 3000 802601262 802601368 2.460000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G293300 chr5A 503055375 503060293 4918 True 9084 9084 100.00000 1 4919 1 chr5A.!!$R1 4918
1 TraesCS5A01G293300 chr5D 397935225 397940034 4809 True 1315 3334 92.44625 2 4909 4 chr5D.!!$R1 4907
2 TraesCS5A01G293300 chr5B 477978472 477983020 4548 True 1799 3181 89.08000 438 4822 3 chr5B.!!$R1 4384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 860 0.038618 TGCTTATGCGTCACAGTCGT 60.039 50.0 0.0 0.0 43.34 4.34 F
1992 2056 0.403271 AGATGCTCTGTTGGCAAGGT 59.597 50.0 0.0 0.0 43.14 3.50 F
2786 2870 0.320374 TGGCCAGTAAGAAGACACCG 59.680 55.0 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2083 0.325484 AGAGAGCAGCCAGGACTCAT 60.325 55.0 0.0 0.0 32.71 2.90 R
2822 2906 0.107508 CTCTGTCGATGGTGCCCAAT 60.108 55.0 0.0 0.0 36.95 3.16 R
4017 4125 0.326264 AGCTTGCGGATTCAACCTCT 59.674 50.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.679002 TGCAGCCAGCTGAAAGGATC 60.679 55.000 23.40 4.18 46.30 3.36
37 38 0.679002 GCAGCCAGCTGAAAGGATCA 60.679 55.000 23.40 0.00 46.30 2.92
42 43 2.094338 GCCAGCTGAAAGGATCAAAAGG 60.094 50.000 17.39 0.00 37.67 3.11
61 62 2.166664 AGGATCGCACTCTAGAAACCAC 59.833 50.000 0.00 0.00 0.00 4.16
81 82 5.934043 ACCACGGTACCAACTTAATTAAGAC 59.066 40.000 27.92 16.20 37.08 3.01
109 110 3.636764 TCTCCTGTATATCGCTGCTCAAA 59.363 43.478 0.00 0.00 0.00 2.69
111 112 4.960938 TCCTGTATATCGCTGCTCAAAAT 58.039 39.130 0.00 0.00 0.00 1.82
113 114 4.751600 CCTGTATATCGCTGCTCAAAATGA 59.248 41.667 0.00 0.00 0.00 2.57
128 129 6.423776 TCAAAATGAATCCTCCTTTGCTTT 57.576 33.333 0.00 0.00 0.00 3.51
135 136 6.225318 TGAATCCTCCTTTGCTTTCAAAATG 58.775 36.000 0.00 0.00 41.22 2.32
136 137 4.605640 TCCTCCTTTGCTTTCAAAATGG 57.394 40.909 0.00 0.00 41.22 3.16
137 138 3.069289 CCTCCTTTGCTTTCAAAATGGC 58.931 45.455 0.00 0.00 41.22 4.40
141 142 4.128643 CCTTTGCTTTCAAAATGGCTTCA 58.871 39.130 0.00 0.00 41.22 3.02
142 143 4.024641 CCTTTGCTTTCAAAATGGCTTCAC 60.025 41.667 0.00 0.00 41.22 3.18
143 144 4.405116 TTGCTTTCAAAATGGCTTCACT 57.595 36.364 0.00 0.00 0.00 3.41
144 145 5.528043 TTGCTTTCAAAATGGCTTCACTA 57.472 34.783 0.00 0.00 0.00 2.74
145 146 5.528043 TGCTTTCAAAATGGCTTCACTAA 57.472 34.783 0.00 0.00 0.00 2.24
146 147 5.288804 TGCTTTCAAAATGGCTTCACTAAC 58.711 37.500 0.00 0.00 0.00 2.34
167 207 5.230323 ACTCTTAGAAGGGTTGGAACTTC 57.770 43.478 0.00 0.00 35.90 3.01
172 212 6.328148 TCTTAGAAGGGTTGGAACTTCACTAA 59.672 38.462 7.12 0.00 44.20 2.24
175 215 4.790718 AGGGTTGGAACTTCACTAACTT 57.209 40.909 0.00 0.00 0.00 2.66
187 227 8.480643 AACTTCACTAACTTGCACATACTATC 57.519 34.615 0.00 0.00 0.00 2.08
192 232 7.976175 TCACTAACTTGCACATACTATCTGAAG 59.024 37.037 0.00 0.00 0.00 3.02
204 244 9.036980 ACATACTATCTGAAGGTTAAAGACACT 57.963 33.333 0.00 0.00 0.00 3.55
218 258 4.983671 AAGACACTGTTTGGAAGAAACC 57.016 40.909 0.00 0.00 0.00 3.27
232 272 2.932261 AGAAACCACCAGAACACTTCC 58.068 47.619 0.00 0.00 0.00 3.46
239 279 1.151668 CCAGAACACTTCCTGAAGCG 58.848 55.000 6.81 0.20 41.99 4.68
247 287 6.262273 AGAACACTTCCTGAAGCGAAATTTTA 59.738 34.615 6.81 0.00 41.99 1.52
252 292 4.411327 TCCTGAAGCGAAATTTTAATGCG 58.589 39.130 0.00 0.00 0.00 4.73
254 294 4.165779 CTGAAGCGAAATTTTAATGCGGT 58.834 39.130 0.00 0.00 31.94 5.68
281 330 3.601443 AAACACAGGTGCTCTAGCTAG 57.399 47.619 15.01 15.01 42.66 3.42
306 355 2.166459 TGGTCTTAAGAGATCACGCAGG 59.834 50.000 5.12 0.00 38.10 4.85
323 372 2.680805 GCAGGTCAGTTTATGGCTGCTA 60.681 50.000 0.00 0.00 35.84 3.49
351 400 2.101700 GCCCTTGCTATGCAGACAC 58.898 57.895 0.00 0.00 40.61 3.67
354 403 1.002366 CCTTGCTATGCAGACACGAC 58.998 55.000 0.00 0.00 40.61 4.34
355 404 1.404717 CCTTGCTATGCAGACACGACT 60.405 52.381 0.00 0.00 40.61 4.18
356 405 1.923204 CTTGCTATGCAGACACGACTC 59.077 52.381 0.00 0.00 40.61 3.36
357 406 1.177401 TGCTATGCAGACACGACTCT 58.823 50.000 0.00 0.00 33.32 3.24
358 407 1.133216 TGCTATGCAGACACGACTCTC 59.867 52.381 0.00 0.00 33.32 3.20
359 408 1.403679 GCTATGCAGACACGACTCTCT 59.596 52.381 0.00 0.00 0.00 3.10
360 409 2.540769 GCTATGCAGACACGACTCTCTC 60.541 54.545 0.00 0.00 0.00 3.20
361 410 1.832883 ATGCAGACACGACTCTCTCT 58.167 50.000 0.00 0.00 0.00 3.10
362 411 1.160989 TGCAGACACGACTCTCTCTC 58.839 55.000 0.00 0.00 0.00 3.20
363 412 1.271108 TGCAGACACGACTCTCTCTCT 60.271 52.381 0.00 0.00 0.00 3.10
364 413 1.396996 GCAGACACGACTCTCTCTCTC 59.603 57.143 0.00 0.00 0.00 3.20
365 414 2.935238 GCAGACACGACTCTCTCTCTCT 60.935 54.545 0.00 0.00 0.00 3.10
366 415 2.930040 CAGACACGACTCTCTCTCTCTC 59.070 54.545 0.00 0.00 0.00 3.20
367 416 2.832129 AGACACGACTCTCTCTCTCTCT 59.168 50.000 0.00 0.00 0.00 3.10
368 417 3.119101 AGACACGACTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
369 418 2.832129 ACACGACTCTCTCTCTCTCTCT 59.168 50.000 0.00 0.00 0.00 3.10
370 419 3.119101 ACACGACTCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
371 420 3.131223 CACGACTCTCTCTCTCTCTCTCT 59.869 52.174 0.00 0.00 0.00 3.10
372 421 3.381908 ACGACTCTCTCTCTCTCTCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
373 422 3.634448 CGACTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
374 423 4.261405 CGACTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
375 424 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
376 425 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
377 426 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
378 427 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
379 428 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
380 429 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
381 430 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
382 431 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
383 432 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
384 433 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
385 434 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
386 435 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
387 436 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
388 437 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
389 438 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
390 439 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
391 440 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
392 441 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
393 442 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
412 461 5.504853 TCTCTCTCTCTCTTGCAGTTCATA 58.495 41.667 0.00 0.00 0.00 2.15
419 468 3.135348 TCTCTTGCAGTTCATATGGGAGG 59.865 47.826 2.13 0.00 0.00 4.30
434 483 0.393132 GGAGGCAGTAAGGTGAAGGC 60.393 60.000 0.00 0.00 0.00 4.35
503 552 3.101643 ACATGGACTGCTAGTCTGGTA 57.898 47.619 13.59 2.73 44.46 3.25
590 639 4.846779 TGCCAGGTATTGTTTTGAGAAC 57.153 40.909 0.00 0.00 0.00 3.01
607 656 9.912634 TTTTGAGAACAGGATTGATTGTAATTC 57.087 29.630 0.00 0.00 0.00 2.17
609 658 7.102993 TGAGAACAGGATTGATTGTAATTCGA 58.897 34.615 0.00 0.00 0.00 3.71
621 674 3.476552 TGTAATTCGATCAATGAGCCCC 58.523 45.455 0.00 0.00 0.00 5.80
623 676 2.267174 ATTCGATCAATGAGCCCCTG 57.733 50.000 0.00 0.00 0.00 4.45
624 677 1.203237 TTCGATCAATGAGCCCCTGA 58.797 50.000 0.00 0.00 0.00 3.86
630 684 4.023707 CGATCAATGAGCCCCTGATTTTAC 60.024 45.833 0.00 0.00 29.97 2.01
636 690 3.282885 GAGCCCCTGATTTTACCTTGAG 58.717 50.000 0.00 0.00 0.00 3.02
638 692 2.017049 CCCCTGATTTTACCTTGAGCG 58.983 52.381 0.00 0.00 0.00 5.03
641 695 3.600388 CCTGATTTTACCTTGAGCGACT 58.400 45.455 0.00 0.00 0.00 4.18
651 705 2.003301 CTTGAGCGACTTCCTTAAGGC 58.997 52.381 17.32 3.81 37.39 4.35
654 708 0.391793 AGCGACTTCCTTAAGGCTGC 60.392 55.000 17.32 14.34 38.75 5.25
655 709 0.673644 GCGACTTCCTTAAGGCTGCA 60.674 55.000 17.32 0.00 38.75 4.41
666 720 5.361285 TCCTTAAGGCTGCAACTTTTGTTAA 59.639 36.000 17.32 0.00 36.56 2.01
669 723 7.226523 CCTTAAGGCTGCAACTTTTGTTAATTT 59.773 33.333 9.00 0.00 41.35 1.82
702 756 2.376695 CCATGATGGCCTTTCCTCAT 57.623 50.000 3.32 1.97 34.90 2.90
703 757 1.961394 CCATGATGGCCTTTCCTCATG 59.039 52.381 18.00 18.00 43.03 3.07
795 851 4.273480 GTCAATAATGGACTGCTTATGCGT 59.727 41.667 0.00 0.00 43.34 5.24
797 853 2.401583 AATGGACTGCTTATGCGTCA 57.598 45.000 19.29 10.93 41.16 4.35
804 860 0.038618 TGCTTATGCGTCACAGTCGT 60.039 50.000 0.00 0.00 43.34 4.34
834 890 0.821711 CCAACGTGACACATGGGGTT 60.822 55.000 16.23 5.07 0.00 4.11
910 966 1.234821 CGACTAAAGCCAAAGCCACA 58.765 50.000 0.00 0.00 41.25 4.17
949 1005 9.152595 CAGATCATACAGAAATCCATAGACATG 57.847 37.037 0.00 0.00 0.00 3.21
962 1020 4.209911 CCATAGACATGCATGTAGTTCACG 59.790 45.833 31.45 15.64 41.95 4.35
965 1023 2.604914 GACATGCATGTAGTTCACGGAG 59.395 50.000 31.45 1.04 41.95 4.63
980 1038 0.820871 CGGAGGAGTTTGAGAGAGGG 59.179 60.000 0.00 0.00 0.00 4.30
1047 1105 0.689623 CAGGGGTGATATGCTCCCTC 59.310 60.000 0.00 0.00 46.12 4.30
1098 1156 3.688185 CAGAGTATGCAATGTTCAGCAGT 59.312 43.478 0.00 0.00 44.94 4.40
1108 1166 1.300931 TTCAGCAGTGACCGCAGAC 60.301 57.895 0.00 0.00 30.10 3.51
1117 1175 1.296715 GACCGCAGACAGGTGGAAT 59.703 57.895 0.00 0.00 43.01 3.01
1173 1231 5.181811 TGTTCTTGAGAAGTTGGCATACATG 59.818 40.000 0.00 0.00 34.27 3.21
1196 1254 4.884164 GGAGAACCTTGATCCATTAACCAG 59.116 45.833 0.00 0.00 33.08 4.00
1236 1294 2.361438 CAGGGAGTTGACCTACGATACC 59.639 54.545 0.00 0.00 36.32 2.73
1338 1396 6.234177 GTTTTTCAAAGATCTCAGAGAGGGA 58.766 40.000 6.24 0.00 0.00 4.20
1389 1447 0.676736 AGGCCGCTGTAATAGAGCTC 59.323 55.000 5.27 5.27 34.03 4.09
1458 1516 3.565764 TCTCATGTGTCCATTGATCCC 57.434 47.619 0.00 0.00 0.00 3.85
1467 1525 1.097547 CCATTGATCCCCGACTGCAC 61.098 60.000 0.00 0.00 0.00 4.57
1497 1555 2.109126 GGATGCTGCCGGTCTTGTC 61.109 63.158 1.90 0.00 0.00 3.18
1512 1570 4.382685 GGTCTTGTCGGAATAGATGGACAA 60.383 45.833 5.48 5.48 44.49 3.18
1527 1585 6.430007 AGATGGACAAAAGGATAAGCTCATT 58.570 36.000 0.00 0.00 0.00 2.57
1529 1587 4.706476 TGGACAAAAGGATAAGCTCATTGG 59.294 41.667 0.00 0.00 0.00 3.16
1544 1605 4.261909 GCTCATTGGAATGCTAAAGGATGG 60.262 45.833 0.00 0.00 36.36 3.51
1545 1606 4.870636 TCATTGGAATGCTAAAGGATGGT 58.129 39.130 0.00 0.00 36.36 3.55
1546 1607 4.646040 TCATTGGAATGCTAAAGGATGGTG 59.354 41.667 0.00 0.00 36.36 4.17
1587 1648 2.061848 TCAGTTGTGGGATTTGGAGGA 58.938 47.619 0.00 0.00 0.00 3.71
1621 1682 7.705325 AGACTACACTTGCCAATTTAGTATACG 59.295 37.037 0.00 0.00 0.00 3.06
1628 1689 6.539649 TGCCAATTTAGTATACGATGCTTC 57.460 37.500 0.00 0.00 0.00 3.86
1638 1699 4.737855 ATACGATGCTTCACCTACACTT 57.262 40.909 0.08 0.00 0.00 3.16
1654 1715 2.687935 ACACTTCAACACCATGAACACC 59.312 45.455 0.00 0.00 35.55 4.16
1667 1728 2.131972 TGAACACCGATTTGACTGTCG 58.868 47.619 2.98 0.00 37.58 4.35
1718 1779 7.006509 CCTGATATCAATGGGGTTCTTTGTAT 58.993 38.462 6.90 0.00 33.69 2.29
1720 1781 7.004086 TGATATCAATGGGGTTCTTTGTATCC 58.996 38.462 1.98 0.00 33.69 2.59
1732 1793 5.426689 TCTTTGTATCCTGCTCAGAATGT 57.573 39.130 0.00 0.00 37.40 2.71
1735 1796 5.885230 TTGTATCCTGCTCAGAATGTTTG 57.115 39.130 0.00 0.00 37.40 2.93
1739 1800 2.089980 CCTGCTCAGAATGTTTGGAGG 58.910 52.381 0.00 0.00 35.45 4.30
1741 1802 1.704628 TGCTCAGAATGTTTGGAGGGA 59.295 47.619 0.00 0.00 37.40 4.20
1742 1803 2.290514 TGCTCAGAATGTTTGGAGGGAG 60.291 50.000 0.00 0.00 37.40 4.30
1745 1806 4.384647 GCTCAGAATGTTTGGAGGGAGTAT 60.385 45.833 0.00 0.00 37.40 2.12
1750 1811 6.316390 CAGAATGTTTGGAGGGAGTATAACAC 59.684 42.308 0.00 0.00 0.00 3.32
1752 1813 3.911260 TGTTTGGAGGGAGTATAACACCA 59.089 43.478 0.00 0.00 29.85 4.17
1763 1824 7.844779 AGGGAGTATAACACCATCGGATAATAT 59.155 37.037 0.00 0.00 29.85 1.28
1789 1850 1.527034 TCAACTCCTTGTCAGCATGC 58.473 50.000 10.51 10.51 34.76 4.06
1795 1856 1.202794 TCCTTGTCAGCATGCTCAACA 60.203 47.619 19.68 21.45 34.76 3.33
1797 1858 2.351447 CCTTGTCAGCATGCTCAACAAG 60.351 50.000 37.46 37.46 41.59 3.16
1826 1887 8.325787 TCTGCAACATAAAAGGTATCCTCTTTA 58.674 33.333 0.00 0.00 33.80 1.85
1844 1905 9.287373 TCCTCTTTATTGTATTGTTTTTACGGT 57.713 29.630 0.00 0.00 0.00 4.83
1845 1906 9.902196 CCTCTTTATTGTATTGTTTTTACGGTT 57.098 29.630 0.00 0.00 0.00 4.44
1893 1954 7.658179 ATTGGCTACTATAAACATCACATCG 57.342 36.000 0.00 0.00 0.00 3.84
1894 1955 4.988540 TGGCTACTATAAACATCACATCGC 59.011 41.667 0.00 0.00 0.00 4.58
1973 2037 8.846943 TTAGCTGTCAAAATTGAGAACATAGA 57.153 30.769 0.00 0.00 37.98 1.98
1974 2038 7.375106 AGCTGTCAAAATTGAGAACATAGAG 57.625 36.000 0.00 0.00 37.98 2.43
1975 2039 7.164122 AGCTGTCAAAATTGAGAACATAGAGA 58.836 34.615 0.00 0.00 37.98 3.10
1976 2040 7.828223 AGCTGTCAAAATTGAGAACATAGAGAT 59.172 33.333 0.00 0.00 37.98 2.75
1977 2041 7.909121 GCTGTCAAAATTGAGAACATAGAGATG 59.091 37.037 0.00 0.00 37.98 2.90
1978 2042 7.755591 TGTCAAAATTGAGAACATAGAGATGC 58.244 34.615 0.00 0.00 37.98 3.91
1979 2043 7.609146 TGTCAAAATTGAGAACATAGAGATGCT 59.391 33.333 0.00 0.00 37.98 3.79
1980 2044 8.121708 GTCAAAATTGAGAACATAGAGATGCTC 58.878 37.037 0.00 0.00 37.98 4.26
1981 2045 8.045507 TCAAAATTGAGAACATAGAGATGCTCT 58.954 33.333 2.22 2.22 40.48 4.09
1982 2046 7.789273 AAATTGAGAACATAGAGATGCTCTG 57.211 36.000 7.19 0.00 41.37 3.35
1983 2047 5.929058 TTGAGAACATAGAGATGCTCTGT 57.071 39.130 7.19 0.00 41.37 3.41
1984 2048 5.929058 TGAGAACATAGAGATGCTCTGTT 57.071 39.130 7.19 4.78 43.94 3.16
1985 2049 5.658468 TGAGAACATAGAGATGCTCTGTTG 58.342 41.667 7.19 7.27 42.08 3.33
1986 2050 5.021033 AGAACATAGAGATGCTCTGTTGG 57.979 43.478 7.19 0.00 42.08 3.77
1987 2051 3.191078 ACATAGAGATGCTCTGTTGGC 57.809 47.619 7.19 0.00 41.37 4.52
1988 2052 2.502947 ACATAGAGATGCTCTGTTGGCA 59.497 45.455 7.19 0.00 41.37 4.92
1989 2053 3.054875 ACATAGAGATGCTCTGTTGGCAA 60.055 43.478 7.19 0.00 41.37 4.52
1990 2054 2.110901 AGAGATGCTCTGTTGGCAAG 57.889 50.000 0.00 0.00 43.14 4.01
1991 2055 1.093159 GAGATGCTCTGTTGGCAAGG 58.907 55.000 0.00 0.00 43.14 3.61
1992 2056 0.403271 AGATGCTCTGTTGGCAAGGT 59.597 50.000 0.00 0.00 43.14 3.50
1993 2057 0.524862 GATGCTCTGTTGGCAAGGTG 59.475 55.000 0.00 0.00 43.14 4.00
1994 2058 1.530013 ATGCTCTGTTGGCAAGGTGC 61.530 55.000 0.00 9.89 43.14 5.01
2008 2072 3.958860 GTGCACCCACCAGCCTCT 61.959 66.667 5.22 0.00 35.92 3.69
2009 2073 3.177884 TGCACCCACCAGCCTCTT 61.178 61.111 0.00 0.00 0.00 2.85
2010 2074 2.360475 GCACCCACCAGCCTCTTC 60.360 66.667 0.00 0.00 0.00 2.87
2011 2075 2.900106 GCACCCACCAGCCTCTTCT 61.900 63.158 0.00 0.00 0.00 2.85
2012 2076 1.553690 GCACCCACCAGCCTCTTCTA 61.554 60.000 0.00 0.00 0.00 2.10
2013 2077 1.207791 CACCCACCAGCCTCTTCTAT 58.792 55.000 0.00 0.00 0.00 1.98
2014 2078 1.561542 CACCCACCAGCCTCTTCTATT 59.438 52.381 0.00 0.00 0.00 1.73
2015 2079 2.771943 CACCCACCAGCCTCTTCTATTA 59.228 50.000 0.00 0.00 0.00 0.98
2016 2080 3.199946 CACCCACCAGCCTCTTCTATTAA 59.800 47.826 0.00 0.00 0.00 1.40
2017 2081 3.850173 ACCCACCAGCCTCTTCTATTAAA 59.150 43.478 0.00 0.00 0.00 1.52
2018 2082 4.291249 ACCCACCAGCCTCTTCTATTAAAA 59.709 41.667 0.00 0.00 0.00 1.52
2019 2083 5.222254 ACCCACCAGCCTCTTCTATTAAAAA 60.222 40.000 0.00 0.00 0.00 1.94
2020 2084 5.893824 CCCACCAGCCTCTTCTATTAAAAAT 59.106 40.000 0.00 0.00 0.00 1.82
2021 2085 6.183360 CCCACCAGCCTCTTCTATTAAAAATG 60.183 42.308 0.00 0.00 0.00 2.32
2022 2086 6.603201 CCACCAGCCTCTTCTATTAAAAATGA 59.397 38.462 0.00 0.00 0.00 2.57
2023 2087 7.201767 CCACCAGCCTCTTCTATTAAAAATGAG 60.202 40.741 0.00 0.00 0.00 2.90
2024 2088 7.337942 CACCAGCCTCTTCTATTAAAAATGAGT 59.662 37.037 0.00 0.00 0.00 3.41
2025 2089 7.554476 ACCAGCCTCTTCTATTAAAAATGAGTC 59.446 37.037 0.00 0.00 0.00 3.36
2026 2090 7.012799 CCAGCCTCTTCTATTAAAAATGAGTCC 59.987 40.741 0.00 0.00 0.00 3.85
2027 2091 7.772757 CAGCCTCTTCTATTAAAAATGAGTCCT 59.227 37.037 0.00 0.00 0.00 3.85
2028 2092 7.772757 AGCCTCTTCTATTAAAAATGAGTCCTG 59.227 37.037 0.00 0.00 0.00 3.86
2029 2093 7.012799 GCCTCTTCTATTAAAAATGAGTCCTGG 59.987 40.741 0.00 0.00 0.00 4.45
2030 2094 7.012799 CCTCTTCTATTAAAAATGAGTCCTGGC 59.987 40.741 0.00 0.00 0.00 4.85
2031 2095 7.633789 TCTTCTATTAAAAATGAGTCCTGGCT 58.366 34.615 0.00 0.00 0.00 4.75
2032 2096 7.554118 TCTTCTATTAAAAATGAGTCCTGGCTG 59.446 37.037 0.00 0.00 0.00 4.85
2033 2097 4.725790 ATTAAAAATGAGTCCTGGCTGC 57.274 40.909 0.00 0.00 0.00 5.25
2034 2098 2.299326 AAAAATGAGTCCTGGCTGCT 57.701 45.000 0.00 0.00 0.00 4.24
2035 2099 1.831580 AAAATGAGTCCTGGCTGCTC 58.168 50.000 0.00 0.00 0.00 4.26
2036 2100 0.990374 AAATGAGTCCTGGCTGCTCT 59.010 50.000 0.00 0.00 0.00 4.09
2037 2101 0.540923 AATGAGTCCTGGCTGCTCTC 59.459 55.000 0.00 1.65 0.00 3.20
2038 2102 0.325484 ATGAGTCCTGGCTGCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
2039 2103 0.543883 TGAGTCCTGGCTGCTCTCTT 60.544 55.000 0.00 0.00 0.00 2.85
2040 2104 0.612744 GAGTCCTGGCTGCTCTCTTT 59.387 55.000 0.00 0.00 0.00 2.52
2041 2105 1.003003 GAGTCCTGGCTGCTCTCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
2042 2106 1.423161 AGTCCTGGCTGCTCTCTTTTT 59.577 47.619 0.00 0.00 0.00 1.94
2075 2139 7.792374 AGCTATCAAATTGACGTTATGATGT 57.208 32.000 0.00 0.00 33.17 3.06
2111 2175 8.570068 TGGTTTATTTCTAGATACCACCAAAC 57.430 34.615 8.24 5.83 31.14 2.93
2198 2282 2.267188 CATCCCTGCAACACATTTCG 57.733 50.000 0.00 0.00 0.00 3.46
2211 2295 2.924926 CACATTTCGCAATTCCCATGTG 59.075 45.455 0.00 0.00 36.57 3.21
2237 2321 6.023603 GGGTATTCCATTAGAGGAGGTGATA 58.976 44.000 0.00 0.00 39.25 2.15
2241 2325 7.937700 ATTCCATTAGAGGAGGTGATAGAAA 57.062 36.000 0.00 0.00 39.25 2.52
2258 2342 9.220767 GTGATAGAAAGTAATGGAACTTCAAGT 57.779 33.333 0.00 0.00 31.72 3.16
2262 2346 8.697507 AGAAAGTAATGGAACTTCAAGTCAAT 57.302 30.769 0.00 0.00 31.72 2.57
2263 2347 8.571336 AGAAAGTAATGGAACTTCAAGTCAATG 58.429 33.333 0.00 0.00 31.72 2.82
2269 2353 8.877864 AATGGAACTTCAAGTCAATGGTAATA 57.122 30.769 0.00 0.00 0.00 0.98
2295 2379 2.033194 GGCCGCACTGGTGAACTAC 61.033 63.158 4.79 0.00 41.21 2.73
2321 2405 2.162681 GCCTGGTTTGAGCAATACTGT 58.837 47.619 0.00 0.00 0.00 3.55
2337 2421 0.394192 CTGTCAAGTGCCACTGGAGA 59.606 55.000 1.05 0.00 26.49 3.71
2367 2451 3.588842 TGGTCCAAAGTCAGATCCATCTT 59.411 43.478 0.00 0.00 34.22 2.40
2377 2461 8.503458 AAGTCAGATCCATCTTAAGTTCATTG 57.497 34.615 1.63 0.00 34.22 2.82
2381 2465 4.591321 TCCATCTTAAGTTCATTGCCCT 57.409 40.909 1.63 0.00 0.00 5.19
2397 2481 5.964958 TTGCCCTTCTGATTTTAGTTCAG 57.035 39.130 0.00 0.00 41.61 3.02
2405 2489 6.097915 TCTGATTTTAGTTCAGAACGAGGT 57.902 37.500 7.68 0.00 44.94 3.85
2425 2509 8.524487 ACGAGGTTTAATTATATTGTTTTGCCA 58.476 29.630 0.00 0.00 0.00 4.92
2426 2510 9.019764 CGAGGTTTAATTATATTGTTTTGCCAG 57.980 33.333 0.00 0.00 0.00 4.85
2493 2577 1.017387 GTGGAATGAATCGGACTGGC 58.983 55.000 0.00 0.00 0.00 4.85
2519 2603 2.479566 TCAGATGTGCTTTCCCAGAC 57.520 50.000 0.00 0.00 0.00 3.51
2525 2609 2.665165 TGTGCTTTCCCAGACAACAAT 58.335 42.857 0.00 0.00 0.00 2.71
2573 2657 4.083324 ACACGAATTGATAGTGTGGCTTTG 60.083 41.667 0.00 0.00 45.99 2.77
2582 2666 0.668401 GTGTGGCTTTGGATTGCTGC 60.668 55.000 0.00 0.00 0.00 5.25
2598 2682 1.858091 CTGCTCTAATCGGCGTGAAT 58.142 50.000 6.85 0.00 0.00 2.57
2600 2684 2.726760 CTGCTCTAATCGGCGTGAATAC 59.273 50.000 6.85 0.00 0.00 1.89
2628 2712 4.569943 TCCAATGAAACCTCTCGAAGAAG 58.430 43.478 0.00 0.00 34.09 2.85
2630 2714 4.629200 CCAATGAAACCTCTCGAAGAAGAG 59.371 45.833 0.00 0.00 39.52 2.85
2786 2870 0.320374 TGGCCAGTAAGAAGACACCG 59.680 55.000 0.00 0.00 0.00 4.94
2822 2906 1.754745 GGACAGGGTGCAGAGTTCA 59.245 57.895 0.00 0.00 0.00 3.18
2853 2937 1.535896 TCGACAGAGAGTTCGAACCAG 59.464 52.381 24.22 12.13 30.62 4.00
3008 3092 2.694628 TGCTGAAGATTTTGTGCCTTGT 59.305 40.909 0.00 0.00 0.00 3.16
3043 3127 3.525537 GAGATCGAGAGGATGTTGCAAA 58.474 45.455 0.00 0.00 34.82 3.68
3068 3152 9.965902 AAGGACTATTTCAATGAGTTAGTCAAT 57.034 29.630 23.68 15.06 40.20 2.57
3114 3198 4.946478 ATAGACTACAAGGATGAGGTGC 57.054 45.455 0.00 0.00 0.00 5.01
3128 3212 1.662629 GAGGTGCTGTCATGTCGATTG 59.337 52.381 0.00 0.00 0.00 2.67
3156 3240 3.874392 TGATGCTCGAGTTCATCTTGA 57.126 42.857 24.41 9.68 39.69 3.02
3183 3267 4.888038 TCCGCAGATGAGAATTTCATTG 57.112 40.909 0.00 6.54 46.51 2.82
3196 3280 8.843262 TGAGAATTTCATTGCTGTAATGGATAG 58.157 33.333 16.66 0.00 45.05 2.08
3203 3287 6.491062 TCATTGCTGTAATGGATAGATTTGGG 59.509 38.462 16.66 0.00 45.05 4.12
3209 3293 2.184088 TGGATAGATTTGGGGTCCGA 57.816 50.000 0.00 0.00 0.00 4.55
3265 3349 3.264947 TGCAATCTGACCAAGAGAATCG 58.735 45.455 0.00 0.00 42.67 3.34
3270 3354 2.231478 TCTGACCAAGAGAATCGTGTCC 59.769 50.000 0.00 0.00 43.30 4.02
3280 3364 0.612732 AATCGTGTCCCGGTACCAGA 60.613 55.000 13.54 5.01 37.11 3.86
3353 3446 2.295253 ACGGAGTATTTTCGAGGCTG 57.705 50.000 0.00 0.00 41.94 4.85
3381 3474 2.281539 TCGAGTCCTAGTGGTTGACA 57.718 50.000 0.00 0.00 34.23 3.58
3384 3477 2.755655 CGAGTCCTAGTGGTTGACAGAT 59.244 50.000 0.00 0.00 34.23 2.90
3387 3480 3.511934 AGTCCTAGTGGTTGACAGATGTC 59.488 47.826 6.01 6.01 38.84 3.06
3402 3495 3.378427 CAGATGTCGTATGACTCTGGACA 59.622 47.826 23.32 5.22 45.70 4.02
3409 3502 3.368427 CGTATGACTCTGGACAACATGGT 60.368 47.826 0.00 0.00 0.00 3.55
3431 3524 1.152694 AGTTTGCCTGCTGCTCCAA 60.153 52.632 0.00 0.00 42.00 3.53
3450 3543 5.982356 TCCAACTGAGATACCTGAAGATTG 58.018 41.667 0.00 0.00 0.00 2.67
3452 3545 4.414337 ACTGAGATACCTGAAGATTGCC 57.586 45.455 0.00 0.00 0.00 4.52
3454 3547 4.472833 ACTGAGATACCTGAAGATTGCCTT 59.527 41.667 0.00 0.00 37.93 4.35
3456 3549 5.188434 TGAGATACCTGAAGATTGCCTTTG 58.812 41.667 0.00 0.00 34.68 2.77
3460 3553 7.753630 AGATACCTGAAGATTGCCTTTGATAT 58.246 34.615 0.00 0.00 34.68 1.63
3461 3554 7.664731 AGATACCTGAAGATTGCCTTTGATATG 59.335 37.037 0.00 0.00 34.68 1.78
3462 3555 5.513233 ACCTGAAGATTGCCTTTGATATGT 58.487 37.500 0.00 0.00 34.68 2.29
3474 3567 5.533903 GCCTTTGATATGTTGGATGATGAGT 59.466 40.000 0.00 0.00 0.00 3.41
3475 3568 6.040166 GCCTTTGATATGTTGGATGATGAGTT 59.960 38.462 0.00 0.00 0.00 3.01
3543 3639 4.258702 ACGCTGGATATAACAGATGTCC 57.741 45.455 10.27 0.00 38.20 4.02
3550 3649 5.846164 TGGATATAACAGATGTCCAGGATGT 59.154 40.000 0.00 0.00 34.93 3.06
3558 3657 4.408921 CAGATGTCCAGGATGTTACCCTTA 59.591 45.833 0.00 0.00 0.00 2.69
3561 3660 3.911260 TGTCCAGGATGTTACCCTTACAA 59.089 43.478 0.00 0.00 29.21 2.41
3564 3663 5.771165 GTCCAGGATGTTACCCTTACAAAAA 59.229 40.000 0.00 0.00 0.00 1.94
3607 3706 0.465097 CGGCATCTGCTTCTCCCATT 60.465 55.000 1.70 0.00 41.70 3.16
3686 3785 7.063426 CGCAAGTTTGATATGTCTAAGAACTCA 59.937 37.037 0.00 0.00 0.00 3.41
3738 3837 5.975282 TGACCAATCTCAGAGATCTTCAAG 58.025 41.667 13.63 2.33 32.89 3.02
3759 3861 2.875933 GTCCGTTTTGATGACACTTGGA 59.124 45.455 0.00 0.00 0.00 3.53
3762 3864 3.315191 CCGTTTTGATGACACTTGGAACT 59.685 43.478 0.00 0.00 0.00 3.01
3766 3868 4.687901 TTGATGACACTTGGAACTCTGA 57.312 40.909 0.00 0.00 0.00 3.27
3768 3870 2.910688 TGACACTTGGAACTCTGACC 57.089 50.000 0.00 0.00 0.00 4.02
3773 3875 3.199946 ACACTTGGAACTCTGACCAGAAA 59.800 43.478 1.08 0.00 36.94 2.52
3774 3876 4.199310 CACTTGGAACTCTGACCAGAAAA 58.801 43.478 1.08 0.00 36.94 2.29
3775 3877 4.640201 CACTTGGAACTCTGACCAGAAAAA 59.360 41.667 1.08 0.00 36.94 1.94
3776 3878 4.884164 ACTTGGAACTCTGACCAGAAAAAG 59.116 41.667 1.08 4.07 36.94 2.27
3837 3945 9.162764 GTGAAAACCTTAAACATCTAGCTATCA 57.837 33.333 0.00 0.00 0.00 2.15
3849 3957 7.095910 ACATCTAGCTATCATTTCGGAAGATG 58.904 38.462 11.37 11.37 42.11 2.90
3857 3965 0.250124 TTTCGGAAGATGTGTGCGGT 60.250 50.000 0.00 0.00 41.60 5.68
3860 3968 0.740868 CGGAAGATGTGTGCGGTGAT 60.741 55.000 0.00 0.00 0.00 3.06
3865 3973 2.011947 AGATGTGTGCGGTGATCAATG 58.988 47.619 0.00 0.00 0.00 2.82
3866 3974 0.452987 ATGTGTGCGGTGATCAATGC 59.547 50.000 12.31 12.31 0.00 3.56
3892 4000 5.255687 ACCAATGTGTCATCAGCTGAATTA 58.744 37.500 22.50 6.19 35.07 1.40
3926 4034 7.262048 CCTTAACAGGAAATCTAGAGACACTC 58.738 42.308 0.00 0.00 44.19 3.51
3928 4036 3.697045 ACAGGAAATCTAGAGACACTCCG 59.303 47.826 0.00 0.24 0.00 4.63
3947 4055 1.789506 GTCTAGAAGATCGCATGCCC 58.210 55.000 13.15 1.39 0.00 5.36
4000 4108 9.056005 TGGTAATCTGTATGACATAAATCTTGC 57.944 33.333 0.00 0.00 0.00 4.01
4015 4123 1.478510 TCTTGCTGGAATCGAGAGGTC 59.521 52.381 0.00 0.00 0.00 3.85
4035 4143 0.729690 GAGAGGTTGAATCCGCAAGC 59.270 55.000 0.00 0.00 44.32 4.01
4087 4195 7.038658 GCCCTTCTCTACCTCAAGATGTATATT 60.039 40.741 0.00 0.00 0.00 1.28
4135 4243 4.394712 CGTGGTGGGAGTGGGAGC 62.395 72.222 0.00 0.00 0.00 4.70
4166 4280 2.972625 TCCCAGCACTCAAGTATTTCG 58.027 47.619 0.00 0.00 0.00 3.46
4183 4297 0.034198 TCGACCTCATTTGTTCGCCA 59.966 50.000 0.00 0.00 0.00 5.69
4246 4360 7.786030 TCCAGAGACTCGAAATAGAATTTGAT 58.214 34.615 0.00 0.00 0.00 2.57
4266 4380 1.899437 GCGGACAGATGGGAGGAACA 61.899 60.000 0.00 0.00 0.00 3.18
4304 4418 1.228552 ATCCACAACCTGGGTGTGC 60.229 57.895 34.23 0.00 41.06 4.57
4332 4446 2.370281 CTGTCGGTACAGCTGATGTT 57.630 50.000 23.35 0.00 46.28 2.71
4334 4448 1.616374 TGTCGGTACAGCTGATGTTCA 59.384 47.619 23.35 9.22 39.96 3.18
4341 4455 0.520404 CAGCTGATGTTCAGTGGTGC 59.480 55.000 8.42 0.00 45.94 5.01
4427 4541 1.872952 CTCGTGTTGACATCAGCCAAA 59.127 47.619 0.00 0.00 0.00 3.28
4431 4545 3.243035 CGTGTTGACATCAGCCAAAGAAA 60.243 43.478 0.00 0.00 0.00 2.52
4434 4548 5.754890 GTGTTGACATCAGCCAAAGAAATTT 59.245 36.000 0.00 0.00 0.00 1.82
4435 4549 6.258507 GTGTTGACATCAGCCAAAGAAATTTT 59.741 34.615 0.00 0.00 0.00 1.82
4436 4550 6.822676 TGTTGACATCAGCCAAAGAAATTTTT 59.177 30.769 0.00 0.00 0.00 1.94
4437 4551 7.011295 TGTTGACATCAGCCAAAGAAATTTTTC 59.989 33.333 0.00 0.00 37.45 2.29
4438 4552 6.580788 TGACATCAGCCAAAGAAATTTTTCA 58.419 32.000 5.88 0.00 39.61 2.69
4439 4553 6.702723 TGACATCAGCCAAAGAAATTTTTCAG 59.297 34.615 5.88 0.00 39.61 3.02
4440 4554 6.585416 ACATCAGCCAAAGAAATTTTTCAGT 58.415 32.000 5.88 0.00 39.61 3.41
4441 4555 7.725251 ACATCAGCCAAAGAAATTTTTCAGTA 58.275 30.769 5.88 0.00 39.61 2.74
4442 4556 7.653311 ACATCAGCCAAAGAAATTTTTCAGTAC 59.347 33.333 5.88 0.00 39.61 2.73
4443 4557 6.512297 TCAGCCAAAGAAATTTTTCAGTACC 58.488 36.000 5.88 0.00 39.61 3.34
4445 4559 6.986231 CAGCCAAAGAAATTTTTCAGTACCTT 59.014 34.615 5.88 0.00 39.61 3.50
4446 4560 7.495606 CAGCCAAAGAAATTTTTCAGTACCTTT 59.504 33.333 5.88 0.00 39.61 3.11
4447 4561 7.710907 AGCCAAAGAAATTTTTCAGTACCTTTC 59.289 33.333 5.88 0.00 39.61 2.62
4448 4562 7.710907 GCCAAAGAAATTTTTCAGTACCTTTCT 59.289 33.333 5.88 0.00 39.61 2.52
4449 4563 9.249457 CCAAAGAAATTTTTCAGTACCTTTCTC 57.751 33.333 5.88 0.00 39.61 2.87
4477 4591 9.770097 ATTCATACGGAGGAGCAATATAATATG 57.230 33.333 0.00 0.00 0.00 1.78
4479 4593 7.563556 TCATACGGAGGAGCAATATAATATGGA 59.436 37.037 0.00 0.00 0.00 3.41
4480 4594 6.620877 ACGGAGGAGCAATATAATATGGAA 57.379 37.500 0.00 0.00 0.00 3.53
4485 4599 9.638176 GGAGGAGCAATATAATATGGAATTCAT 57.362 33.333 7.93 2.02 39.78 2.57
4506 4620 6.450545 TCATTTGACCTCTCATCGATGATAC 58.549 40.000 27.43 16.43 36.02 2.24
4516 4630 4.327680 TCATCGATGATACGGACATCTCT 58.672 43.478 23.99 0.00 41.06 3.10
4538 4652 2.603560 GACTGAGCACAAATAGCGGTAC 59.396 50.000 0.00 0.00 37.01 3.34
4556 4670 3.134262 GGTACGGCTTATTTCTTCCTCCT 59.866 47.826 0.00 0.00 0.00 3.69
4567 4681 3.684408 TCTTCCTCCTAGTTACCTCCC 57.316 52.381 0.00 0.00 0.00 4.30
4568 4682 2.931088 TCTTCCTCCTAGTTACCTCCCA 59.069 50.000 0.00 0.00 0.00 4.37
4569 4683 2.842645 TCCTCCTAGTTACCTCCCAC 57.157 55.000 0.00 0.00 0.00 4.61
4581 4695 1.448540 CTCCCACGGCAGCTGTAAG 60.449 63.158 16.64 9.49 0.00 2.34
4590 4704 2.670229 CGGCAGCTGTAAGTCTCGTTTA 60.670 50.000 16.64 0.00 35.30 2.01
4592 4706 3.552294 GGCAGCTGTAAGTCTCGTTTATC 59.448 47.826 16.64 0.00 35.30 1.75
4594 4708 4.266502 GCAGCTGTAAGTCTCGTTTATCTG 59.733 45.833 16.64 0.00 35.30 2.90
4603 4731 5.014858 AGTCTCGTTTATCTGGTAGGAACA 58.985 41.667 0.00 0.00 0.00 3.18
4622 4986 5.529060 GGAACAATCTGGAAGCTAGGTATTG 59.471 44.000 11.15 11.15 0.00 1.90
4699 5068 8.353423 ACAGAAAATTTCTAGTGCCACATATT 57.647 30.769 8.03 0.00 38.11 1.28
4700 5069 8.806146 ACAGAAAATTTCTAGTGCCACATATTT 58.194 29.630 8.03 0.00 38.11 1.40
4701 5070 9.294030 CAGAAAATTTCTAGTGCCACATATTTC 57.706 33.333 8.03 0.00 38.11 2.17
4702 5071 8.470002 AGAAAATTTCTAGTGCCACATATTTCC 58.530 33.333 6.43 0.00 38.49 3.13
4703 5072 7.716799 AAATTTCTAGTGCCACATATTTCCA 57.283 32.000 0.00 0.00 0.00 3.53
4704 5073 7.902920 AATTTCTAGTGCCACATATTTCCAT 57.097 32.000 0.00 0.00 0.00 3.41
4705 5074 7.902920 ATTTCTAGTGCCACATATTTCCATT 57.097 32.000 0.00 0.00 0.00 3.16
4706 5075 6.942532 TTCTAGTGCCACATATTTCCATTC 57.057 37.500 0.00 0.00 0.00 2.67
4741 5122 8.133024 TCTTTTATAACATGGCCATCAAAACT 57.867 30.769 17.61 1.14 0.00 2.66
4743 5124 6.463995 TTATAACATGGCCATCAAAACTCC 57.536 37.500 17.61 0.00 0.00 3.85
4815 5196 8.149973 ACATTTCACTATGTACTTCGTGTTTT 57.850 30.769 11.59 0.00 36.99 2.43
4824 5205 6.601741 TGTACTTCGTGTTTTCGGTTTAAT 57.398 33.333 0.00 0.00 0.00 1.40
4837 5218 7.441890 TTTCGGTTTAATCTTTAGTGCATCA 57.558 32.000 0.00 0.00 0.00 3.07
4848 5229 9.890629 AATCTTTAGTGCATCAGTAGTTAATCA 57.109 29.630 0.00 0.00 0.00 2.57
4849 5230 8.703604 TCTTTAGTGCATCAGTAGTTAATCAC 57.296 34.615 0.00 0.00 0.00 3.06
4850 5231 8.311109 TCTTTAGTGCATCAGTAGTTAATCACA 58.689 33.333 0.00 0.00 0.00 3.58
4851 5232 8.479313 TTTAGTGCATCAGTAGTTAATCACAG 57.521 34.615 0.00 0.00 0.00 3.66
4853 5234 7.170393 AGTGCATCAGTAGTTAATCACAGTA 57.830 36.000 0.00 0.00 0.00 2.74
4867 5248 8.989980 GTTAATCACAGTATTATACCTTCCTGC 58.010 37.037 0.00 0.00 0.00 4.85
4868 5249 5.546621 TCACAGTATTATACCTTCCTGCC 57.453 43.478 0.00 0.00 0.00 4.85
4909 5337 3.519510 AGAAATCTCTCCGTGATGGGAAA 59.480 43.478 0.00 0.00 38.76 3.13
4910 5338 4.164988 AGAAATCTCTCCGTGATGGGAAAT 59.835 41.667 0.00 0.00 38.76 2.17
4911 5339 3.760580 ATCTCTCCGTGATGGGAAATC 57.239 47.619 0.00 0.00 38.76 2.17
4912 5340 1.762957 TCTCTCCGTGATGGGAAATCC 59.237 52.381 0.00 0.00 38.76 3.01
4913 5341 1.765314 CTCTCCGTGATGGGAAATCCT 59.235 52.381 0.00 0.00 38.76 3.24
4914 5342 1.486310 TCTCCGTGATGGGAAATCCTG 59.514 52.381 0.00 0.00 38.76 3.86
4915 5343 1.210478 CTCCGTGATGGGAAATCCTGT 59.790 52.381 0.00 0.00 38.76 4.00
4916 5344 1.065491 TCCGTGATGGGAAATCCTGTG 60.065 52.381 0.00 0.00 38.76 3.66
4917 5345 1.340017 CCGTGATGGGAAATCCTGTGT 60.340 52.381 0.00 0.00 36.20 3.72
4918 5346 2.093181 CCGTGATGGGAAATCCTGTGTA 60.093 50.000 0.00 0.00 36.20 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.770699 GCAGAATAATGCAGCCTGAC 57.229 50.000 0.00 0.00 45.77 3.51
36 37 4.093556 GGTTTCTAGAGTGCGATCCTTTTG 59.906 45.833 0.00 0.00 0.00 2.44
37 38 4.254492 GGTTTCTAGAGTGCGATCCTTTT 58.746 43.478 0.00 0.00 0.00 2.27
42 43 2.186076 CGTGGTTTCTAGAGTGCGATC 58.814 52.381 0.00 0.00 0.00 3.69
45 46 0.038526 ACCGTGGTTTCTAGAGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
53 54 4.420522 TTAAGTTGGTACCGTGGTTTCT 57.579 40.909 7.57 0.00 0.00 2.52
61 62 5.170748 ACCGTCTTAATTAAGTTGGTACCG 58.829 41.667 27.61 15.87 38.83 4.02
81 82 3.736252 CAGCGATATACAGGAGAAAACCG 59.264 47.826 0.00 0.00 34.73 4.44
109 110 6.423776 TTTGAAAGCAAAGGAGGATTCATT 57.576 33.333 0.00 0.00 38.99 2.57
111 112 5.867903 TTTTGAAAGCAAAGGAGGATTCA 57.132 34.783 0.00 0.00 44.18 2.57
113 114 5.554070 CCATTTTGAAAGCAAAGGAGGATT 58.446 37.500 0.00 0.00 44.18 3.01
128 129 7.450074 TCTAAGAGTTAGTGAAGCCATTTTGA 58.550 34.615 0.00 0.00 34.81 2.69
135 136 4.223255 ACCCTTCTAAGAGTTAGTGAAGCC 59.777 45.833 0.00 0.00 34.51 4.35
136 137 5.408880 ACCCTTCTAAGAGTTAGTGAAGC 57.591 43.478 0.00 0.00 34.51 3.86
137 138 6.014499 TCCAACCCTTCTAAGAGTTAGTGAAG 60.014 42.308 0.00 0.00 34.81 3.02
141 142 5.845065 AGTTCCAACCCTTCTAAGAGTTAGT 59.155 40.000 0.00 0.00 34.81 2.24
142 143 6.361768 AGTTCCAACCCTTCTAAGAGTTAG 57.638 41.667 0.00 0.00 34.52 2.34
143 144 6.328148 TGAAGTTCCAACCCTTCTAAGAGTTA 59.672 38.462 0.00 0.00 38.30 2.24
144 145 5.132144 TGAAGTTCCAACCCTTCTAAGAGTT 59.868 40.000 0.00 0.00 38.30 3.01
145 146 4.658901 TGAAGTTCCAACCCTTCTAAGAGT 59.341 41.667 0.00 0.00 38.30 3.24
146 147 4.998033 GTGAAGTTCCAACCCTTCTAAGAG 59.002 45.833 0.00 0.00 38.30 2.85
167 207 7.223582 CCTTCAGATAGTATGTGCAAGTTAGTG 59.776 40.741 2.38 0.00 0.00 2.74
172 212 5.683876 ACCTTCAGATAGTATGTGCAAGT 57.316 39.130 2.38 0.00 0.00 3.16
175 215 7.764443 GTCTTTAACCTTCAGATAGTATGTGCA 59.236 37.037 2.38 0.00 0.00 4.57
187 227 5.588648 TCCAAACAGTGTCTTTAACCTTCAG 59.411 40.000 0.00 0.00 0.00 3.02
192 232 6.445357 TTCTTCCAAACAGTGTCTTTAACC 57.555 37.500 0.00 0.00 0.00 2.85
204 244 3.374042 TCTGGTGGTTTCTTCCAAACA 57.626 42.857 0.03 0.00 39.34 2.83
218 258 1.876156 GCTTCAGGAAGTGTTCTGGTG 59.124 52.381 10.47 0.00 40.45 4.17
232 272 4.165779 ACCGCATTAAAATTTCGCTTCAG 58.834 39.130 0.00 0.00 0.00 3.02
239 279 8.279103 TGTTTTGATCAACCGCATTAAAATTTC 58.721 29.630 7.89 0.00 0.00 2.17
247 287 3.552684 CCTGTGTTTTGATCAACCGCATT 60.553 43.478 7.89 0.00 0.00 3.56
252 292 2.362077 AGCACCTGTGTTTTGATCAACC 59.638 45.455 7.89 2.41 0.00 3.77
254 294 3.554934 AGAGCACCTGTGTTTTGATCAA 58.445 40.909 3.38 3.38 0.00 2.57
281 330 3.735514 GCGTGATCTCTTAAGACCACTCC 60.736 52.174 18.19 10.31 43.07 3.85
306 355 3.243201 GCCATTAGCAGCCATAAACTGAC 60.243 47.826 0.00 0.00 42.97 3.51
335 384 1.002366 GTCGTGTCTGCATAGCAAGG 58.998 55.000 0.00 0.00 38.41 3.61
351 400 3.634448 AGAGAGAGAGAGAGAGAGAGTCG 59.366 52.174 0.00 0.00 0.00 4.18
354 403 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
355 404 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
356 405 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
357 406 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
358 407 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
359 408 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
360 409 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
361 410 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
362 411 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
363 412 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
364 413 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
365 414 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
366 415 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
367 416 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
368 417 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
369 418 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
370 419 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
371 420 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
372 421 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
373 422 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
374 423 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
375 424 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
376 425 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
377 426 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
378 427 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
379 428 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
380 429 5.599732 CAAGAGAGAGAGAGAGAGAGAGAG 58.400 50.000 0.00 0.00 0.00 3.20
381 430 4.141846 GCAAGAGAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
382 431 4.125703 GCAAGAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
383 432 3.519107 TGCAAGAGAGAGAGAGAGAGAGA 59.481 47.826 0.00 0.00 0.00 3.10
384 433 3.875727 CTGCAAGAGAGAGAGAGAGAGAG 59.124 52.174 0.00 0.00 34.07 3.20
385 434 3.264193 ACTGCAAGAGAGAGAGAGAGAGA 59.736 47.826 0.00 0.00 37.43 3.10
386 435 3.614092 ACTGCAAGAGAGAGAGAGAGAG 58.386 50.000 0.00 0.00 37.43 3.20
387 436 3.719268 ACTGCAAGAGAGAGAGAGAGA 57.281 47.619 0.00 0.00 37.43 3.10
388 437 3.758023 TGAACTGCAAGAGAGAGAGAGAG 59.242 47.826 0.00 0.00 37.43 3.20
389 438 3.760738 TGAACTGCAAGAGAGAGAGAGA 58.239 45.455 0.00 0.00 37.43 3.10
390 439 4.724074 ATGAACTGCAAGAGAGAGAGAG 57.276 45.455 0.00 0.00 37.43 3.20
391 440 5.068855 CCATATGAACTGCAAGAGAGAGAGA 59.931 44.000 3.65 0.00 37.43 3.10
392 441 5.291178 CCATATGAACTGCAAGAGAGAGAG 58.709 45.833 3.65 0.00 37.43 3.20
393 442 4.100653 CCCATATGAACTGCAAGAGAGAGA 59.899 45.833 3.65 0.00 37.43 3.10
412 461 1.561542 CTTCACCTTACTGCCTCCCAT 59.438 52.381 0.00 0.00 0.00 4.00
419 468 0.741221 CTCGGCCTTCACCTTACTGC 60.741 60.000 0.00 0.00 0.00 4.40
434 483 4.974368 ACTTCTGTAGAATCTGACTCGG 57.026 45.455 0.00 0.00 33.01 4.63
552 601 5.013913 ACCTGGCAATCATATGAGCTATTCT 59.986 40.000 11.78 0.00 0.00 2.40
553 602 5.251764 ACCTGGCAATCATATGAGCTATTC 58.748 41.667 11.78 0.00 0.00 1.75
554 603 5.252586 ACCTGGCAATCATATGAGCTATT 57.747 39.130 11.78 0.00 0.00 1.73
590 639 8.562052 TCATTGATCGAATTACAATCAATCCTG 58.438 33.333 14.74 9.31 44.33 3.86
607 656 2.267174 AATCAGGGGCTCATTGATCG 57.733 50.000 3.58 0.00 31.50 3.69
609 658 4.078980 AGGTAAAATCAGGGGCTCATTGAT 60.079 41.667 0.00 0.00 33.18 2.57
621 674 4.093556 GGAAGTCGCTCAAGGTAAAATCAG 59.906 45.833 0.00 0.00 0.00 2.90
623 676 4.254492 AGGAAGTCGCTCAAGGTAAAATC 58.746 43.478 0.00 0.00 0.00 2.17
624 677 4.287766 AGGAAGTCGCTCAAGGTAAAAT 57.712 40.909 0.00 0.00 0.00 1.82
630 684 2.622436 CCTTAAGGAAGTCGCTCAAGG 58.378 52.381 17.21 0.00 37.39 3.61
636 690 0.673644 TGCAGCCTTAAGGAAGTCGC 60.674 55.000 26.21 17.57 37.39 5.19
638 692 2.784347 AGTTGCAGCCTTAAGGAAGTC 58.216 47.619 26.21 7.23 37.39 3.01
641 695 3.704061 ACAAAAGTTGCAGCCTTAAGGAA 59.296 39.130 26.21 7.50 37.39 3.36
666 720 6.824704 CCATCATGGCAACCTTTATTGAAAAT 59.175 34.615 0.00 0.00 0.00 1.82
669 723 5.341872 CCATCATGGCAACCTTTATTGAA 57.658 39.130 0.00 0.00 0.00 2.69
683 737 1.961394 CATGAGGAAAGGCCATCATGG 59.039 52.381 19.20 0.00 42.42 3.66
716 771 6.257849 CACTATAACCGTGAAATAGCATGTGT 59.742 38.462 0.00 0.00 34.35 3.72
744 799 5.768317 TGAAAAGTATTTCGCTTCCTTTGG 58.232 37.500 0.00 0.00 46.47 3.28
753 808 5.013861 TGACGAGTTGAAAAGTATTTCGC 57.986 39.130 0.00 0.00 46.47 4.70
804 860 1.885388 CACGTTGGCGACCAGTCAA 60.885 57.895 0.00 0.00 43.01 3.18
834 890 7.387673 CACACAACTAGATATTTGTTCACTGGA 59.612 37.037 0.00 0.00 33.59 3.86
949 1005 1.204941 ACTCCTCCGTGAACTACATGC 59.795 52.381 0.00 0.00 34.47 4.06
962 1020 2.239681 TCCCTCTCTCAAACTCCTCC 57.760 55.000 0.00 0.00 0.00 4.30
965 1023 2.613223 CGGTTTCCCTCTCTCAAACTCC 60.613 54.545 0.00 0.00 31.80 3.85
980 1038 4.438744 CCATTAATTGCACTCTCCGGTTTC 60.439 45.833 0.00 0.00 0.00 2.78
987 1045 2.288666 TCCGCCATTAATTGCACTCTC 58.711 47.619 11.65 0.00 0.00 3.20
1047 1105 3.415457 AGAGAACCAAGCTTCTCAAGG 57.585 47.619 14.12 7.02 46.04 3.61
1068 1126 2.512286 GCATACTCTGCCGCTGCA 60.512 61.111 1.88 1.88 45.66 4.41
1098 1156 1.480212 ATTCCACCTGTCTGCGGTCA 61.480 55.000 0.00 0.00 30.82 4.02
1108 1166 3.054434 TCATCCACCAGTAATTCCACCTG 60.054 47.826 0.00 0.00 0.00 4.00
1117 1175 1.208052 GCTGAGCTCATCCACCAGTAA 59.792 52.381 18.63 0.00 0.00 2.24
1173 1231 4.855340 TGGTTAATGGATCAAGGTTCTCC 58.145 43.478 0.00 0.00 0.00 3.71
1196 1254 2.276740 CCTGGTCCCTCCATTGCC 59.723 66.667 0.00 0.00 46.12 4.52
1236 1294 2.095466 GGAGCTGACGATAGAATCCTCG 60.095 54.545 0.00 1.94 40.62 4.63
1458 1516 0.380733 TATAGAGCACGTGCAGTCGG 59.619 55.000 39.21 2.42 45.16 4.79
1467 1525 2.064762 GCAGCATCCTTATAGAGCACG 58.935 52.381 0.00 0.00 0.00 5.34
1497 1555 6.073003 GCTTATCCTTTTGTCCATCTATTCCG 60.073 42.308 0.00 0.00 0.00 4.30
1503 1561 5.441718 TGAGCTTATCCTTTTGTCCATCT 57.558 39.130 0.00 0.00 0.00 2.90
1512 1570 5.206587 AGCATTCCAATGAGCTTATCCTTT 58.793 37.500 3.35 0.00 38.70 3.11
1527 1585 3.620488 GTCACCATCCTTTAGCATTCCA 58.380 45.455 0.00 0.00 0.00 3.53
1529 1587 3.620488 TGGTCACCATCCTTTAGCATTC 58.380 45.455 0.00 0.00 0.00 2.67
1611 1672 7.067859 AGTGTAGGTGAAGCATCGTATACTAAA 59.932 37.037 0.56 0.00 29.61 1.85
1621 1682 4.065088 TGTTGAAGTGTAGGTGAAGCATC 58.935 43.478 0.00 0.00 0.00 3.91
1628 1689 3.738982 TCATGGTGTTGAAGTGTAGGTG 58.261 45.455 0.00 0.00 0.00 4.00
1638 1699 2.559698 ATCGGTGTTCATGGTGTTGA 57.440 45.000 0.00 0.00 0.00 3.18
1654 1715 3.120546 ACAAATGCTCGACAGTCAAATCG 60.121 43.478 0.41 0.00 39.72 3.34
1667 1728 1.079503 GGAGACCGACACAAATGCTC 58.920 55.000 0.00 0.00 0.00 4.26
1718 1779 2.290514 CCTCCAAACATTCTGAGCAGGA 60.291 50.000 0.00 0.00 0.00 3.86
1720 1781 2.089980 CCCTCCAAACATTCTGAGCAG 58.910 52.381 0.00 0.00 0.00 4.24
1732 1793 4.141801 CGATGGTGTTATACTCCCTCCAAA 60.142 45.833 0.00 0.00 31.02 3.28
1735 1796 2.299297 CCGATGGTGTTATACTCCCTCC 59.701 54.545 0.00 0.00 31.02 4.30
1763 1824 5.129634 TGCTGACAAGGAGTTGAACATTAA 58.870 37.500 0.00 0.00 37.10 1.40
1789 1850 3.570926 ATGTTGCAGATGCTTGTTGAG 57.429 42.857 6.35 0.00 42.66 3.02
1795 1856 6.183360 GGATACCTTTTATGTTGCAGATGCTT 60.183 38.462 6.35 0.00 42.66 3.91
1797 1858 5.300286 AGGATACCTTTTATGTTGCAGATGC 59.700 40.000 0.00 0.00 38.67 3.91
1840 1901 9.449719 AGATTCAGTTGAGAAATAATAAACCGT 57.550 29.630 0.00 0.00 0.00 4.83
1874 1935 8.526218 AATCTGCGATGTGATGTTTATAGTAG 57.474 34.615 0.00 0.00 0.00 2.57
1882 1943 8.437360 TTTAATAGAATCTGCGATGTGATGTT 57.563 30.769 0.00 0.00 0.00 2.71
1947 2011 9.453572 TCTATGTTCTCAATTTTGACAGCTAAT 57.546 29.630 0.00 0.00 32.90 1.73
1948 2012 8.846943 TCTATGTTCTCAATTTTGACAGCTAA 57.153 30.769 0.00 0.00 32.90 3.09
1949 2013 8.314021 TCTCTATGTTCTCAATTTTGACAGCTA 58.686 33.333 0.00 0.00 32.90 3.32
1950 2014 7.164122 TCTCTATGTTCTCAATTTTGACAGCT 58.836 34.615 0.00 0.00 32.90 4.24
1951 2015 7.369803 TCTCTATGTTCTCAATTTTGACAGC 57.630 36.000 0.00 0.00 32.90 4.40
1952 2016 7.909121 GCATCTCTATGTTCTCAATTTTGACAG 59.091 37.037 0.00 0.00 35.38 3.51
1953 2017 7.609146 AGCATCTCTATGTTCTCAATTTTGACA 59.391 33.333 0.00 0.00 35.38 3.58
1954 2018 7.983307 AGCATCTCTATGTTCTCAATTTTGAC 58.017 34.615 0.00 0.00 35.38 3.18
1955 2019 8.206325 GAGCATCTCTATGTTCTCAATTTTGA 57.794 34.615 0.00 0.00 39.51 2.69
1974 2038 0.524862 CACCTTGCCAACAGAGCATC 59.475 55.000 0.00 0.00 40.59 3.91
1975 2039 1.530013 GCACCTTGCCAACAGAGCAT 61.530 55.000 0.00 0.00 40.59 3.79
1976 2040 2.195567 GCACCTTGCCAACAGAGCA 61.196 57.895 0.00 0.00 37.42 4.26
1977 2041 2.195567 TGCACCTTGCCAACAGAGC 61.196 57.895 0.00 0.00 44.23 4.09
1978 2042 1.656441 GTGCACCTTGCCAACAGAG 59.344 57.895 5.22 0.00 44.23 3.35
1979 2043 1.827789 GGTGCACCTTGCCAACAGA 60.828 57.895 29.12 0.00 44.23 3.41
1980 2044 2.730094 GGTGCACCTTGCCAACAG 59.270 61.111 29.12 0.00 44.23 3.16
1981 2045 2.837291 GGGTGCACCTTGCCAACA 60.837 61.111 33.91 0.00 44.23 3.33
1982 2046 2.837291 TGGGTGCACCTTGCCAAC 60.837 61.111 33.91 16.73 44.23 3.77
1983 2047 2.837291 GTGGGTGCACCTTGCCAA 60.837 61.111 33.91 11.27 44.23 4.52
1984 2048 4.912395 GGTGGGTGCACCTTGCCA 62.912 66.667 33.91 21.03 44.23 4.92
1985 2049 4.912395 TGGTGGGTGCACCTTGCC 62.912 66.667 33.91 29.26 44.23 4.52
1986 2050 3.297620 CTGGTGGGTGCACCTTGC 61.298 66.667 33.91 22.62 45.21 4.01
1987 2051 3.297620 GCTGGTGGGTGCACCTTG 61.298 66.667 33.91 19.57 45.21 3.61
1988 2052 4.603535 GGCTGGTGGGTGCACCTT 62.604 66.667 33.91 0.00 45.21 3.50
1991 2055 3.497884 AAGAGGCTGGTGGGTGCAC 62.498 63.158 8.80 8.80 0.00 4.57
1992 2056 3.177884 AAGAGGCTGGTGGGTGCA 61.178 61.111 0.00 0.00 0.00 4.57
1993 2057 1.553690 TAGAAGAGGCTGGTGGGTGC 61.554 60.000 0.00 0.00 0.00 5.01
1994 2058 1.207791 ATAGAAGAGGCTGGTGGGTG 58.792 55.000 0.00 0.00 0.00 4.61
1995 2059 1.972588 AATAGAAGAGGCTGGTGGGT 58.027 50.000 0.00 0.00 0.00 4.51
1996 2060 4.503714 TTTAATAGAAGAGGCTGGTGGG 57.496 45.455 0.00 0.00 0.00 4.61
1997 2061 6.603201 TCATTTTTAATAGAAGAGGCTGGTGG 59.397 38.462 0.00 0.00 0.00 4.61
1998 2062 7.337942 ACTCATTTTTAATAGAAGAGGCTGGTG 59.662 37.037 0.00 0.00 0.00 4.17
1999 2063 7.406104 ACTCATTTTTAATAGAAGAGGCTGGT 58.594 34.615 0.00 0.00 0.00 4.00
2000 2064 7.012799 GGACTCATTTTTAATAGAAGAGGCTGG 59.987 40.741 0.00 0.00 30.57 4.85
2001 2065 7.772757 AGGACTCATTTTTAATAGAAGAGGCTG 59.227 37.037 0.00 0.00 30.57 4.85
2002 2066 7.772757 CAGGACTCATTTTTAATAGAAGAGGCT 59.227 37.037 0.00 0.00 30.57 4.58
2003 2067 7.012799 CCAGGACTCATTTTTAATAGAAGAGGC 59.987 40.741 0.00 0.00 0.00 4.70
2004 2068 7.012799 GCCAGGACTCATTTTTAATAGAAGAGG 59.987 40.741 0.00 0.00 0.00 3.69
2005 2069 7.772757 AGCCAGGACTCATTTTTAATAGAAGAG 59.227 37.037 0.00 0.00 0.00 2.85
2006 2070 7.554118 CAGCCAGGACTCATTTTTAATAGAAGA 59.446 37.037 0.00 0.00 0.00 2.87
2007 2071 7.680588 GCAGCCAGGACTCATTTTTAATAGAAG 60.681 40.741 0.00 0.00 0.00 2.85
2008 2072 6.095440 GCAGCCAGGACTCATTTTTAATAGAA 59.905 38.462 0.00 0.00 0.00 2.10
2009 2073 5.590259 GCAGCCAGGACTCATTTTTAATAGA 59.410 40.000 0.00 0.00 0.00 1.98
2010 2074 5.591877 AGCAGCCAGGACTCATTTTTAATAG 59.408 40.000 0.00 0.00 0.00 1.73
2011 2075 5.509498 AGCAGCCAGGACTCATTTTTAATA 58.491 37.500 0.00 0.00 0.00 0.98
2012 2076 4.347607 AGCAGCCAGGACTCATTTTTAAT 58.652 39.130 0.00 0.00 0.00 1.40
2013 2077 3.758554 GAGCAGCCAGGACTCATTTTTAA 59.241 43.478 0.00 0.00 0.00 1.52
2014 2078 3.009473 AGAGCAGCCAGGACTCATTTTTA 59.991 43.478 0.00 0.00 32.71 1.52
2015 2079 2.165998 GAGCAGCCAGGACTCATTTTT 58.834 47.619 0.00 0.00 0.00 1.94
2016 2080 1.353694 AGAGCAGCCAGGACTCATTTT 59.646 47.619 0.00 0.00 32.71 1.82
2017 2081 0.990374 AGAGCAGCCAGGACTCATTT 59.010 50.000 0.00 0.00 32.71 2.32
2018 2082 0.540923 GAGAGCAGCCAGGACTCATT 59.459 55.000 0.00 0.00 32.71 2.57
2019 2083 0.325484 AGAGAGCAGCCAGGACTCAT 60.325 55.000 0.00 0.00 32.71 2.90
2020 2084 0.543883 AAGAGAGCAGCCAGGACTCA 60.544 55.000 0.00 0.00 32.71 3.41
2021 2085 0.612744 AAAGAGAGCAGCCAGGACTC 59.387 55.000 0.00 0.00 0.00 3.36
2022 2086 1.063183 AAAAGAGAGCAGCCAGGACT 58.937 50.000 0.00 0.00 0.00 3.85
2023 2087 1.902938 AAAAAGAGAGCAGCCAGGAC 58.097 50.000 0.00 0.00 0.00 3.85
2041 2105 9.431887 ACGTCAATTTGATAGCTAACTAGAAAA 57.568 29.630 1.78 0.00 0.00 2.29
2042 2106 8.997621 ACGTCAATTTGATAGCTAACTAGAAA 57.002 30.769 1.78 0.00 0.00 2.52
2043 2107 8.997621 AACGTCAATTTGATAGCTAACTAGAA 57.002 30.769 1.78 0.00 0.00 2.10
2047 2111 8.942338 TCATAACGTCAATTTGATAGCTAACT 57.058 30.769 1.78 0.00 0.00 2.24
2048 2112 9.586150 CATCATAACGTCAATTTGATAGCTAAC 57.414 33.333 1.78 0.00 0.00 2.34
2056 2120 8.541133 TGTTCTACATCATAACGTCAATTTGA 57.459 30.769 0.00 0.00 0.00 2.69
2163 2247 6.548993 TGCAGGGATGCACATAATACAAAATA 59.451 34.615 0.00 0.00 40.23 1.40
2165 2249 4.708909 TGCAGGGATGCACATAATACAAAA 59.291 37.500 0.00 0.00 40.23 2.44
2178 2262 1.733389 CGAAATGTGTTGCAGGGATGC 60.733 52.381 0.00 0.00 0.00 3.91
2183 2267 2.068837 ATTGCGAAATGTGTTGCAGG 57.931 45.000 0.00 0.00 38.75 4.85
2191 2275 2.562298 ACACATGGGAATTGCGAAATGT 59.438 40.909 0.00 5.95 0.00 2.71
2215 2299 8.423906 TTCTATCACCTCCTCTAATGGAATAC 57.576 38.462 0.00 0.00 35.43 1.89
2216 2300 9.094578 CTTTCTATCACCTCCTCTAATGGAATA 57.905 37.037 0.00 0.00 35.43 1.75
2217 2301 7.570607 ACTTTCTATCACCTCCTCTAATGGAAT 59.429 37.037 0.00 0.00 35.43 3.01
2219 2303 6.444704 ACTTTCTATCACCTCCTCTAATGGA 58.555 40.000 0.00 0.00 34.52 3.41
2220 2304 6.739331 ACTTTCTATCACCTCCTCTAATGG 57.261 41.667 0.00 0.00 0.00 3.16
2221 2305 9.703892 CATTACTTTCTATCACCTCCTCTAATG 57.296 37.037 0.00 0.00 0.00 1.90
2222 2306 8.875168 CCATTACTTTCTATCACCTCCTCTAAT 58.125 37.037 0.00 0.00 0.00 1.73
2237 2321 8.571336 CATTGACTTGAAGTTCCATTACTTTCT 58.429 33.333 0.00 0.00 38.43 2.52
2241 2325 6.306987 ACCATTGACTTGAAGTTCCATTACT 58.693 36.000 0.00 0.00 0.00 2.24
2258 2342 6.887002 TGCGGCCATAATAATATTACCATTGA 59.113 34.615 2.24 0.00 0.00 2.57
2262 2346 5.645929 CAGTGCGGCCATAATAATATTACCA 59.354 40.000 2.24 0.00 0.00 3.25
2263 2347 5.065988 CCAGTGCGGCCATAATAATATTACC 59.934 44.000 2.24 0.00 0.00 2.85
2269 2353 2.158682 TCACCAGTGCGGCCATAATAAT 60.159 45.455 2.24 0.00 39.03 1.28
2312 2396 2.095567 CAGTGGCACTTGACAGTATTGC 60.096 50.000 19.43 0.00 33.61 3.56
2321 2405 0.394192 CTGTCTCCAGTGGCACTTGA 59.606 55.000 19.43 19.22 33.80 3.02
2337 2421 0.398318 GACTTTGGACCAGCCTCTGT 59.602 55.000 0.00 0.00 37.63 3.41
2340 2424 0.687354 TCTGACTTTGGACCAGCCTC 59.313 55.000 0.00 0.00 37.63 4.70
2343 2427 1.003580 TGGATCTGACTTTGGACCAGC 59.996 52.381 0.00 0.00 0.00 4.85
2367 2451 6.916360 AAAATCAGAAGGGCAATGAACTTA 57.084 33.333 0.00 0.00 0.00 2.24
2459 2543 8.861033 ATTCATTCCACAAATCATCAATTACG 57.139 30.769 0.00 0.00 0.00 3.18
2493 2577 5.614308 TGGGAAAGCACATCTGATAGTATG 58.386 41.667 0.00 0.00 0.00 2.39
2519 2603 7.011109 ACGATTAATCTACTTCCGGAATTGTTG 59.989 37.037 19.21 13.88 0.00 3.33
2525 2609 7.338800 AGTTACGATTAATCTACTTCCGGAA 57.661 36.000 17.73 17.73 0.00 4.30
2573 2657 0.871057 GCCGATTAGAGCAGCAATCC 59.129 55.000 0.00 0.00 0.00 3.01
2598 2682 5.808540 CGAGAGGTTTCATTGGATAAACGTA 59.191 40.000 0.00 0.00 36.63 3.57
2600 2684 4.868171 TCGAGAGGTTTCATTGGATAAACG 59.132 41.667 0.00 0.00 36.63 3.60
2628 2712 9.530633 TGTAAGAAAAAGTCTTCTTGAGTACTC 57.469 33.333 16.32 16.32 43.49 2.59
2786 2870 0.955919 CCCAGTGCTCCTTTCGTTCC 60.956 60.000 0.00 0.00 0.00 3.62
2822 2906 0.107508 CTCTGTCGATGGTGCCCAAT 60.108 55.000 0.00 0.00 36.95 3.16
2853 2937 8.958043 GTTTAAGATTTGTGACATCTGTTTCAC 58.042 33.333 0.00 0.00 42.18 3.18
3156 3240 5.183713 TGAAATTCTCATCTGCGGATTTGTT 59.816 36.000 4.93 0.00 0.00 2.83
3167 3251 7.558807 TCCATTACAGCAATGAAATTCTCATCT 59.441 33.333 0.00 0.00 45.99 2.90
3183 3267 4.729868 ACCCCAAATCTATCCATTACAGC 58.270 43.478 0.00 0.00 0.00 4.40
3196 3280 0.326927 TCCACTTCGGACCCCAAATC 59.673 55.000 0.00 0.00 39.64 2.17
3203 3287 2.047179 GTGCCTCCACTTCGGACC 60.047 66.667 0.00 0.00 39.64 4.46
3209 3293 1.729586 TCTTACTGGTGCCTCCACTT 58.270 50.000 0.00 0.00 41.93 3.16
3265 3349 1.079336 GCTTCTGGTACCGGGACAC 60.079 63.158 21.02 8.85 0.00 3.67
3270 3354 4.273480 CAGAATAATTGCTTCTGGTACCGG 59.727 45.833 15.21 15.21 43.76 5.28
3280 3364 6.204688 TCGAACTTGTGTCAGAATAATTGCTT 59.795 34.615 0.00 0.00 0.00 3.91
3330 3414 3.118738 AGCCTCGAAAATACTCCGTCAAT 60.119 43.478 0.00 0.00 0.00 2.57
3344 3437 4.174009 CTCGAATAAACTTCAGCCTCGAA 58.826 43.478 0.00 0.00 33.88 3.71
3353 3446 5.963594 ACCACTAGGACTCGAATAAACTTC 58.036 41.667 0.00 0.00 38.69 3.01
3381 3474 3.621558 TGTCCAGAGTCATACGACATCT 58.378 45.455 0.00 0.00 45.23 2.90
3384 3477 2.888414 TGTTGTCCAGAGTCATACGACA 59.112 45.455 7.96 7.96 45.23 4.35
3387 3480 3.190079 CCATGTTGTCCAGAGTCATACG 58.810 50.000 0.00 0.00 0.00 3.06
3402 3495 1.688197 CAGGCAAACTCCAACCATGTT 59.312 47.619 0.00 0.00 0.00 2.71
3409 3502 3.447040 GCAGCAGGCAAACTCCAA 58.553 55.556 0.00 0.00 43.97 3.53
3431 3524 4.036518 AGGCAATCTTCAGGTATCTCAGT 58.963 43.478 0.00 0.00 0.00 3.41
3450 3543 5.533903 ACTCATCATCCAACATATCAAAGGC 59.466 40.000 0.00 0.00 0.00 4.35
3452 3545 8.680001 TCAAACTCATCATCCAACATATCAAAG 58.320 33.333 0.00 0.00 0.00 2.77
3454 3547 8.756486 ATCAAACTCATCATCCAACATATCAA 57.244 30.769 0.00 0.00 0.00 2.57
3456 3549 8.618702 AGATCAAACTCATCATCCAACATATC 57.381 34.615 0.00 0.00 0.00 1.63
3460 3553 6.950842 ACTAGATCAAACTCATCATCCAACA 58.049 36.000 0.00 0.00 0.00 3.33
3461 3554 8.200792 ACTACTAGATCAAACTCATCATCCAAC 58.799 37.037 0.00 0.00 0.00 3.77
3462 3555 8.311395 ACTACTAGATCAAACTCATCATCCAA 57.689 34.615 0.00 0.00 0.00 3.53
3573 3672 2.970974 GCCGCAAGCTGGACAAGTC 61.971 63.158 0.00 0.00 38.99 3.01
3607 3706 3.954904 GTCATCAGGCAAGACTACCTCTA 59.045 47.826 0.00 0.00 32.56 2.43
3738 3837 2.875933 TCCAAGTGTCATCAAAACGGAC 59.124 45.455 0.00 0.00 0.00 4.79
3759 3861 4.103311 AGCTACCTTTTTCTGGTCAGAGTT 59.897 41.667 0.75 0.00 38.88 3.01
3762 3864 3.904339 AGAGCTACCTTTTTCTGGTCAGA 59.096 43.478 0.00 0.00 38.88 3.27
3766 3868 4.518249 GCATAGAGCTACCTTTTTCTGGT 58.482 43.478 0.00 0.00 41.15 4.00
3837 3945 1.086696 CCGCACACATCTTCCGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
3849 3957 1.137404 GGCATTGATCACCGCACAC 59.863 57.895 15.47 0.00 0.00 3.82
3857 3965 3.947196 GACACATTGGTAGGCATTGATCA 59.053 43.478 0.00 0.00 0.00 2.92
3860 3968 3.431673 TGACACATTGGTAGGCATTGA 57.568 42.857 0.00 0.00 0.00 2.57
3865 3973 1.672881 GCTGATGACACATTGGTAGGC 59.327 52.381 0.00 0.00 0.00 3.93
3866 3974 2.941064 CAGCTGATGACACATTGGTAGG 59.059 50.000 8.42 0.00 0.00 3.18
3906 4014 3.697045 CGGAGTGTCTCTAGATTTCCTGT 59.303 47.826 0.00 0.00 0.00 4.00
3926 4034 1.413382 GCATGCGATCTTCTAGACGG 58.587 55.000 0.00 0.00 0.00 4.79
3928 4036 1.069204 TGGGCATGCGATCTTCTAGAC 59.931 52.381 12.44 0.00 0.00 2.59
3933 4041 2.175878 ATAGTGGGCATGCGATCTTC 57.824 50.000 12.44 0.00 0.00 2.87
3974 4082 9.056005 GCAAGATTTATGTCATACAGATTACCA 57.944 33.333 0.00 0.00 0.00 3.25
4015 4123 1.002366 CTTGCGGATTCAACCTCTCG 58.998 55.000 0.00 0.00 0.00 4.04
4016 4124 0.729690 GCTTGCGGATTCAACCTCTC 59.270 55.000 0.00 0.00 0.00 3.20
4017 4125 0.326264 AGCTTGCGGATTCAACCTCT 59.674 50.000 0.00 0.00 0.00 3.69
4018 4126 2.024176 TAGCTTGCGGATTCAACCTC 57.976 50.000 0.00 0.00 0.00 3.85
4019 4127 2.684881 CAATAGCTTGCGGATTCAACCT 59.315 45.455 0.00 0.00 0.00 3.50
4020 4128 2.682856 TCAATAGCTTGCGGATTCAACC 59.317 45.455 0.00 0.00 32.11 3.77
4021 4129 4.558538 ATCAATAGCTTGCGGATTCAAC 57.441 40.909 0.00 0.00 32.11 3.18
4022 4130 5.412594 GGATATCAATAGCTTGCGGATTCAA 59.587 40.000 4.83 0.00 32.11 2.69
4027 4135 4.318332 CAAGGATATCAATAGCTTGCGGA 58.682 43.478 4.83 0.00 32.11 5.54
4060 4168 2.623418 TCTTGAGGTAGAGAAGGGCA 57.377 50.000 0.00 0.00 0.00 5.36
4087 4195 8.028354 ACAATTGTTTCAGCGATGAATATCAAA 58.972 29.630 17.94 7.89 32.67 2.69
4089 4197 7.087409 ACAATTGTTTCAGCGATGAATATCA 57.913 32.000 17.94 13.54 32.67 2.15
4095 4203 4.142622 GGATGACAATTGTTTCAGCGATGA 60.143 41.667 13.36 0.00 0.00 2.92
4166 4280 0.521735 GGTGGCGAACAAATGAGGTC 59.478 55.000 0.00 0.00 0.00 3.85
4183 4297 1.133513 TGCTCAAAAGACACCCATGGT 60.134 47.619 11.73 0.00 35.62 3.55
4193 4307 1.619827 CATTGCCCCTTGCTCAAAAGA 59.380 47.619 0.00 0.00 42.00 2.52
4246 4360 1.612146 TTCCTCCCATCTGTCCGCA 60.612 57.895 0.00 0.00 0.00 5.69
4266 4380 2.124819 CTGCAGGCGCTCTTCCAT 60.125 61.111 7.64 0.00 39.64 3.41
4302 4416 0.896479 TACCGACAGTACCTGCAGCA 60.896 55.000 8.66 0.00 34.37 4.41
4304 4418 3.715854 GTACCGACAGTACCTGCAG 57.284 57.895 6.78 6.78 44.85 4.41
4315 4429 2.263077 CTGAACATCAGCTGTACCGAC 58.737 52.381 14.67 3.39 37.72 4.79
4332 4446 1.530655 TCAGACTCCGCACCACTGA 60.531 57.895 0.00 0.00 35.65 3.41
4334 4448 1.399744 TTGTCAGACTCCGCACCACT 61.400 55.000 1.31 0.00 0.00 4.00
4341 4455 0.605589 AGCTTCCTTGTCAGACTCCG 59.394 55.000 1.31 0.00 0.00 4.63
4393 4507 1.906824 ACGAGGGTCACGTGGATGT 60.907 57.895 17.00 3.46 42.37 3.06
4434 4548 8.195436 CCGTATGAATAGAGAAAGGTACTGAAA 58.805 37.037 0.00 0.00 40.86 2.69
4435 4549 7.558807 TCCGTATGAATAGAGAAAGGTACTGAA 59.441 37.037 0.00 0.00 40.86 3.02
4436 4550 7.058525 TCCGTATGAATAGAGAAAGGTACTGA 58.941 38.462 0.00 0.00 40.86 3.41
4437 4551 7.273320 TCCGTATGAATAGAGAAAGGTACTG 57.727 40.000 0.00 0.00 40.86 2.74
4439 4553 6.489361 TCCTCCGTATGAATAGAGAAAGGTAC 59.511 42.308 0.00 0.00 0.00 3.34
4440 4554 6.607970 TCCTCCGTATGAATAGAGAAAGGTA 58.392 40.000 0.00 0.00 0.00 3.08
4441 4555 5.455872 TCCTCCGTATGAATAGAGAAAGGT 58.544 41.667 0.00 0.00 0.00 3.50
4442 4556 5.565834 GCTCCTCCGTATGAATAGAGAAAGG 60.566 48.000 0.00 0.00 0.00 3.11
4443 4557 5.010112 TGCTCCTCCGTATGAATAGAGAAAG 59.990 44.000 0.00 0.00 0.00 2.62
4445 4559 4.470602 TGCTCCTCCGTATGAATAGAGAA 58.529 43.478 0.00 0.00 0.00 2.87
4446 4560 4.100279 TGCTCCTCCGTATGAATAGAGA 57.900 45.455 0.00 0.00 0.00 3.10
4447 4561 4.855715 TTGCTCCTCCGTATGAATAGAG 57.144 45.455 0.00 0.00 0.00 2.43
4448 4562 8.589701 TTATATTGCTCCTCCGTATGAATAGA 57.410 34.615 0.00 0.00 0.00 1.98
4454 4568 7.726216 TCCATATTATATTGCTCCTCCGTATG 58.274 38.462 0.00 0.00 0.00 2.39
4476 4590 4.877823 CGATGAGAGGTCAAATGAATTCCA 59.122 41.667 2.27 0.00 35.88 3.53
4477 4591 5.118990 TCGATGAGAGGTCAAATGAATTCC 58.881 41.667 2.27 0.00 35.88 3.01
4479 4593 6.351711 TCATCGATGAGAGGTCAAATGAATT 58.648 36.000 23.99 0.00 35.88 2.17
4480 4594 5.922053 TCATCGATGAGAGGTCAAATGAAT 58.078 37.500 23.99 0.00 35.88 2.57
4485 4599 4.261614 CCGTATCATCGATGAGAGGTCAAA 60.262 45.833 30.00 10.24 40.64 2.69
4486 4600 3.253432 CCGTATCATCGATGAGAGGTCAA 59.747 47.826 30.00 10.87 40.64 3.18
4487 4601 2.814336 CCGTATCATCGATGAGAGGTCA 59.186 50.000 30.00 11.51 40.64 4.02
4488 4602 3.075148 TCCGTATCATCGATGAGAGGTC 58.925 50.000 30.00 16.83 40.64 3.85
4489 4603 2.814919 GTCCGTATCATCGATGAGAGGT 59.185 50.000 30.00 19.11 40.64 3.85
4490 4604 2.814336 TGTCCGTATCATCGATGAGAGG 59.186 50.000 30.11 28.64 40.64 3.69
4491 4605 4.394610 AGATGTCCGTATCATCGATGAGAG 59.605 45.833 30.11 22.33 44.20 3.20
4492 4606 4.327680 AGATGTCCGTATCATCGATGAGA 58.672 43.478 30.11 24.67 44.20 3.27
4493 4607 4.394610 AGAGATGTCCGTATCATCGATGAG 59.605 45.833 30.11 18.07 44.20 2.90
4494 4608 4.154918 CAGAGATGTCCGTATCATCGATGA 59.845 45.833 29.09 29.09 44.20 2.92
4495 4609 4.154918 TCAGAGATGTCCGTATCATCGATG 59.845 45.833 19.61 19.61 44.20 3.84
4496 4610 4.155099 GTCAGAGATGTCCGTATCATCGAT 59.845 45.833 0.00 0.00 44.20 3.59
4497 4611 3.498777 GTCAGAGATGTCCGTATCATCGA 59.501 47.826 0.00 0.00 44.20 3.59
4516 4630 1.001974 ACCGCTATTTGTGCTCAGTCA 59.998 47.619 0.00 0.00 0.00 3.41
4538 4652 4.674281 ACTAGGAGGAAGAAATAAGCCG 57.326 45.455 0.00 0.00 0.00 5.52
4567 4681 1.073216 CGAGACTTACAGCTGCCGTG 61.073 60.000 15.27 4.30 0.00 4.94
4568 4682 1.213013 CGAGACTTACAGCTGCCGT 59.787 57.895 15.27 8.32 0.00 5.68
4569 4683 0.388649 AACGAGACTTACAGCTGCCG 60.389 55.000 15.27 4.69 0.00 5.69
4581 4695 5.320549 TGTTCCTACCAGATAAACGAGAC 57.679 43.478 0.00 0.00 0.00 3.36
4590 4704 4.384647 GCTTCCAGATTGTTCCTACCAGAT 60.385 45.833 0.00 0.00 0.00 2.90
4592 4706 3.054802 AGCTTCCAGATTGTTCCTACCAG 60.055 47.826 0.00 0.00 0.00 4.00
4594 4708 3.636153 AGCTTCCAGATTGTTCCTACC 57.364 47.619 0.00 0.00 0.00 3.18
4603 4731 5.665812 TGTACCAATACCTAGCTTCCAGATT 59.334 40.000 0.00 0.00 0.00 2.40
4622 4986 5.250200 TGGGTGTAATCAATCTGTTGTACC 58.750 41.667 0.00 0.00 36.69 3.34
4630 4994 5.296780 CGCTAACAATGGGTGTAATCAATCT 59.703 40.000 0.00 0.00 40.60 2.40
4763 5144 5.585820 ACACGGTGAGGTTTTAAAAACAT 57.414 34.783 17.91 3.47 0.00 2.71
4815 5196 6.170506 ACTGATGCACTAAAGATTAAACCGA 58.829 36.000 0.00 0.00 0.00 4.69
4824 5205 8.311109 TGTGATTAACTACTGATGCACTAAAGA 58.689 33.333 0.00 0.00 0.00 2.52
4845 5226 5.606749 TGGCAGGAAGGTATAATACTGTGAT 59.393 40.000 0.00 0.00 0.00 3.06
4846 5227 4.966168 TGGCAGGAAGGTATAATACTGTGA 59.034 41.667 0.00 0.00 0.00 3.58
4847 5228 5.057149 GTGGCAGGAAGGTATAATACTGTG 58.943 45.833 0.00 0.00 0.00 3.66
4848 5229 4.202223 CGTGGCAGGAAGGTATAATACTGT 60.202 45.833 0.00 0.00 0.00 3.55
4849 5230 4.307432 CGTGGCAGGAAGGTATAATACTG 58.693 47.826 0.00 0.00 0.00 2.74
4850 5231 3.244112 GCGTGGCAGGAAGGTATAATACT 60.244 47.826 12.03 0.00 0.00 2.12
4851 5232 3.064931 GCGTGGCAGGAAGGTATAATAC 58.935 50.000 12.03 0.00 0.00 1.89
4853 5234 1.202770 GGCGTGGCAGGAAGGTATAAT 60.203 52.381 12.03 0.00 0.00 1.28
4857 5238 3.712907 GGGCGTGGCAGGAAGGTA 61.713 66.667 12.03 0.00 0.00 3.08
4859 5240 4.351054 AAGGGCGTGGCAGGAAGG 62.351 66.667 12.03 0.00 0.00 3.46
4860 5241 3.058160 CAAGGGCGTGGCAGGAAG 61.058 66.667 12.03 0.00 0.00 3.46
4865 5246 4.892965 AACTGCAAGGGCGTGGCA 62.893 61.111 9.20 9.20 45.35 4.92
4866 5247 4.347453 CAACTGCAAGGGCGTGGC 62.347 66.667 0.00 0.00 45.35 5.01
4867 5248 1.599518 TACAACTGCAAGGGCGTGG 60.600 57.895 0.00 0.00 45.35 4.94
4868 5249 1.163420 TGTACAACTGCAAGGGCGTG 61.163 55.000 0.00 0.00 45.35 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.