Multiple sequence alignment - TraesCS5A01G293200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G293200 chr5A 100.000 4596 0 0 1 4596 503048113 503052708 0.000000e+00 8488.0
1 TraesCS5A01G293200 chr5A 77.173 1599 296 48 1982 3546 37081214 37082777 0.000000e+00 867.0
2 TraesCS5A01G293200 chr5A 78.246 1140 205 29 1982 3114 528269249 528270352 0.000000e+00 691.0
3 TraesCS5A01G293200 chr5A 77.574 709 131 19 2843 3538 502500126 502499433 1.990000e-108 403.0
4 TraesCS5A01G293200 chr5A 90.821 207 17 2 1 206 326431811 326431606 4.530000e-70 276.0
5 TraesCS5A01G293200 chr5A 89.362 47 5 0 3487 3533 476691329 476691283 4.970000e-05 60.2
6 TraesCS5A01G293200 chr5D 89.989 2647 181 45 1982 4591 397929811 397932410 0.000000e+00 3343.0
7 TraesCS5A01G293200 chr5D 88.411 1070 69 25 787 1843 397928035 397929062 0.000000e+00 1238.0
8 TraesCS5A01G293200 chr5D 78.015 1592 291 44 1982 3546 46067432 46068991 0.000000e+00 946.0
9 TraesCS5A01G293200 chr5D 78.495 651 120 17 1982 2619 415629640 415630283 4.280000e-110 409.0
10 TraesCS5A01G293200 chr5D 85.000 120 13 3 685 800 397927645 397927763 2.910000e-22 117.0
11 TraesCS5A01G293200 chr5D 88.235 51 6 0 3483 3533 375407240 375407190 1.380000e-05 62.1
12 TraesCS5A01G293200 chr5B 94.469 1374 67 3 1982 3346 477965192 477966565 0.000000e+00 2108.0
13 TraesCS5A01G293200 chr5B 87.150 1323 101 35 582 1866 477962880 477964171 0.000000e+00 1437.0
14 TraesCS5A01G293200 chr5B 90.027 752 52 14 3391 4127 477966563 477967306 0.000000e+00 952.0
15 TraesCS5A01G293200 chr5B 77.750 1600 289 43 1982 3546 47122494 47124061 0.000000e+00 920.0
16 TraesCS5A01G293200 chr5B 77.175 1586 310 39 1985 3546 476917775 476916218 0.000000e+00 876.0
17 TraesCS5A01G293200 chr5B 78.162 925 141 40 2267 3144 477984388 477985298 2.430000e-147 532.0
18 TraesCS5A01G293200 chr6B 84.943 352 42 7 201 550 444910941 444910599 3.400000e-91 346.0
19 TraesCS5A01G293200 chr6B 84.943 352 42 7 201 550 444921821 444921479 3.400000e-91 346.0
20 TraesCS5A01G293200 chr6B 81.951 205 32 2 548 751 133693720 133693520 7.910000e-38 169.0
21 TraesCS5A01G293200 chr6A 93.237 207 13 1 1 206 384090077 384090283 2.080000e-78 303.0
22 TraesCS5A01G293200 chr6A 91.346 208 15 3 1 206 10139282 10139076 9.740000e-72 281.0
23 TraesCS5A01G293200 chr6A 89.855 207 19 2 1 206 592358918 592358713 9.800000e-67 265.0
24 TraesCS5A01G293200 chr6A 83.415 205 28 3 550 753 76516079 76515880 7.850000e-43 185.0
25 TraesCS5A01G293200 chr6A 80.000 210 39 3 545 753 549454950 549454743 7.960000e-33 152.0
26 TraesCS5A01G293200 chr7B 82.535 355 45 12 201 547 35313839 35314184 3.480000e-76 296.0
27 TraesCS5A01G293200 chr7B 82.405 341 48 7 201 539 704277449 704277779 2.090000e-73 287.0
28 TraesCS5A01G293200 chr7B 82.436 353 37 15 199 539 554172078 554172417 7.530000e-73 285.0
29 TraesCS5A01G293200 chr7A 82.749 342 48 9 201 539 208122985 208123318 1.250000e-75 294.0
30 TraesCS5A01G293200 chr3D 82.507 343 52 6 201 542 587933627 587933962 1.250000e-75 294.0
31 TraesCS5A01G293200 chr3D 89.231 65 7 0 615 679 591603783 591603847 1.060000e-11 82.4
32 TraesCS5A01G293200 chr7D 82.507 343 47 10 201 539 232817282 232816949 5.820000e-74 289.0
33 TraesCS5A01G293200 chr7D 90.865 208 15 4 1 206 527466954 527466749 4.530000e-70 276.0
34 TraesCS5A01G293200 chr1A 82.544 338 49 8 201 537 532712560 532712888 5.820000e-74 289.0
35 TraesCS5A01G293200 chr2A 91.787 207 15 2 1 206 75640808 75640603 2.090000e-73 287.0
36 TraesCS5A01G293200 chr2A 90.821 207 14 5 2 206 565815350 565815553 5.860000e-69 272.0
37 TraesCS5A01G293200 chr2A 85.938 64 9 0 615 678 652858687 652858750 8.250000e-08 69.4
38 TraesCS5A01G293200 chr6D 90.909 209 14 3 3 207 141922644 141922437 4.530000e-70 276.0
39 TraesCS5A01G293200 chr4A 90.000 210 20 1 1 209 736486901 736486692 2.110000e-68 270.0
40 TraesCS5A01G293200 chr2B 95.238 42 2 0 615 656 392615357 392615398 2.970000e-07 67.6
41 TraesCS5A01G293200 chr2B 95.238 42 2 0 615 656 392648899 392648940 2.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G293200 chr5A 503048113 503052708 4595 False 8488 8488 100.000000 1 4596 1 chr5A.!!$F2 4595
1 TraesCS5A01G293200 chr5A 37081214 37082777 1563 False 867 867 77.173000 1982 3546 1 chr5A.!!$F1 1564
2 TraesCS5A01G293200 chr5A 528269249 528270352 1103 False 691 691 78.246000 1982 3114 1 chr5A.!!$F3 1132
3 TraesCS5A01G293200 chr5A 502499433 502500126 693 True 403 403 77.574000 2843 3538 1 chr5A.!!$R3 695
4 TraesCS5A01G293200 chr5D 397927645 397932410 4765 False 1566 3343 87.800000 685 4591 3 chr5D.!!$F3 3906
5 TraesCS5A01G293200 chr5D 46067432 46068991 1559 False 946 946 78.015000 1982 3546 1 chr5D.!!$F1 1564
6 TraesCS5A01G293200 chr5D 415629640 415630283 643 False 409 409 78.495000 1982 2619 1 chr5D.!!$F2 637
7 TraesCS5A01G293200 chr5B 477962880 477967306 4426 False 1499 2108 90.548667 582 4127 3 chr5B.!!$F3 3545
8 TraesCS5A01G293200 chr5B 47122494 47124061 1567 False 920 920 77.750000 1982 3546 1 chr5B.!!$F1 1564
9 TraesCS5A01G293200 chr5B 476916218 476917775 1557 True 876 876 77.175000 1985 3546 1 chr5B.!!$R1 1561
10 TraesCS5A01G293200 chr5B 477984388 477985298 910 False 532 532 78.162000 2267 3144 1 chr5B.!!$F2 877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.033503 ATTTTAAGGGGTGAGGCCGG 60.034 55.0 0.0 0.0 38.44 6.13 F
209 210 0.034059 CAGGCAAGTCTCGTCCACTT 59.966 55.0 0.0 0.0 34.24 3.16 F
1653 1981 0.105658 AAGTCGGCCCCTGAGCTATA 60.106 55.0 0.0 0.0 0.00 1.31 F
2428 3740 0.038166 TTGACTGTGGCTTCCATCCC 59.962 55.0 0.0 0.0 35.28 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2090 3380 0.035458 CTCCAGGAACGCAGAAAGGT 59.965 55.000 0.0 0.0 0.00 3.50 R
2098 3388 2.268920 TGGCATCTCCAGGAACGC 59.731 61.111 0.0 0.0 40.72 4.84 R
2740 4056 1.001048 CGGAGGACGTTGTTACACAGA 60.001 52.381 0.0 0.0 37.93 3.41 R
3932 5323 0.037697 TGCCGTGTGTCTATGTGTCC 60.038 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
20 21 2.124778 GCTTGCCTGCTCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
21 22 2.588989 CTTGCCTGCTCCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
22 23 2.203983 TTGCCTGCTCCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
23 24 1.617536 TTGCCTGCTCCCTCTCCAT 60.618 57.895 0.00 0.00 0.00 3.41
24 25 0.326522 TTGCCTGCTCCCTCTCCATA 60.327 55.000 0.00 0.00 0.00 2.74
25 26 1.050988 TGCCTGCTCCCTCTCCATAC 61.051 60.000 0.00 0.00 0.00 2.39
26 27 0.762461 GCCTGCTCCCTCTCCATACT 60.762 60.000 0.00 0.00 0.00 2.12
27 28 1.337118 CCTGCTCCCTCTCCATACTC 58.663 60.000 0.00 0.00 0.00 2.59
28 29 1.337118 CTGCTCCCTCTCCATACTCC 58.663 60.000 0.00 0.00 0.00 3.85
29 30 0.105453 TGCTCCCTCTCCATACTCCC 60.105 60.000 0.00 0.00 0.00 4.30
30 31 1.182385 GCTCCCTCTCCATACTCCCG 61.182 65.000 0.00 0.00 0.00 5.14
31 32 0.186386 CTCCCTCTCCATACTCCCGT 59.814 60.000 0.00 0.00 0.00 5.28
32 33 0.185416 TCCCTCTCCATACTCCCGTC 59.815 60.000 0.00 0.00 0.00 4.79
33 34 0.828343 CCCTCTCCATACTCCCGTCC 60.828 65.000 0.00 0.00 0.00 4.79
34 35 1.173444 CCTCTCCATACTCCCGTCCG 61.173 65.000 0.00 0.00 0.00 4.79
35 36 0.465824 CTCTCCATACTCCCGTCCGT 60.466 60.000 0.00 0.00 0.00 4.69
36 37 0.750546 TCTCCATACTCCCGTCCGTG 60.751 60.000 0.00 0.00 0.00 4.94
37 38 2.106332 CCATACTCCCGTCCGTGC 59.894 66.667 0.00 0.00 0.00 5.34
38 39 2.423898 CCATACTCCCGTCCGTGCT 61.424 63.158 0.00 0.00 0.00 4.40
39 40 1.065928 CATACTCCCGTCCGTGCTC 59.934 63.158 0.00 0.00 0.00 4.26
40 41 2.125961 ATACTCCCGTCCGTGCTCC 61.126 63.158 0.00 0.00 0.00 4.70
44 45 4.096003 CCCGTCCGTGCTCCCATT 62.096 66.667 0.00 0.00 0.00 3.16
45 46 2.046314 CCGTCCGTGCTCCCATTT 60.046 61.111 0.00 0.00 0.00 2.32
46 47 2.106683 CCGTCCGTGCTCCCATTTC 61.107 63.158 0.00 0.00 0.00 2.17
47 48 1.375396 CGTCCGTGCTCCCATTTCA 60.375 57.895 0.00 0.00 0.00 2.69
48 49 0.744414 CGTCCGTGCTCCCATTTCAT 60.744 55.000 0.00 0.00 0.00 2.57
49 50 1.017387 GTCCGTGCTCCCATTTCATC 58.983 55.000 0.00 0.00 0.00 2.92
50 51 0.911769 TCCGTGCTCCCATTTCATCT 59.088 50.000 0.00 0.00 0.00 2.90
51 52 1.281867 TCCGTGCTCCCATTTCATCTT 59.718 47.619 0.00 0.00 0.00 2.40
52 53 2.503765 TCCGTGCTCCCATTTCATCTTA 59.496 45.455 0.00 0.00 0.00 2.10
53 54 2.614057 CCGTGCTCCCATTTCATCTTAC 59.386 50.000 0.00 0.00 0.00 2.34
54 55 2.285220 CGTGCTCCCATTTCATCTTACG 59.715 50.000 0.00 0.00 0.00 3.18
55 56 2.614057 GTGCTCCCATTTCATCTTACGG 59.386 50.000 0.00 0.00 0.00 4.02
56 57 1.604278 GCTCCCATTTCATCTTACGGC 59.396 52.381 0.00 0.00 0.00 5.68
57 58 2.746472 GCTCCCATTTCATCTTACGGCT 60.746 50.000 0.00 0.00 0.00 5.52
58 59 2.874701 CTCCCATTTCATCTTACGGCTG 59.125 50.000 0.00 0.00 0.00 4.85
59 60 2.238646 TCCCATTTCATCTTACGGCTGT 59.761 45.455 2.42 2.42 0.00 4.40
60 61 2.614057 CCCATTTCATCTTACGGCTGTC 59.386 50.000 0.00 0.00 0.00 3.51
61 62 3.535561 CCATTTCATCTTACGGCTGTCT 58.464 45.455 0.00 0.00 0.00 3.41
62 63 3.941483 CCATTTCATCTTACGGCTGTCTT 59.059 43.478 0.00 0.00 0.00 3.01
63 64 4.396166 CCATTTCATCTTACGGCTGTCTTT 59.604 41.667 0.00 0.00 0.00 2.52
64 65 5.106157 CCATTTCATCTTACGGCTGTCTTTT 60.106 40.000 0.00 0.00 0.00 2.27
65 66 6.381801 CATTTCATCTTACGGCTGTCTTTTT 58.618 36.000 0.00 0.00 0.00 1.94
66 67 5.607119 TTCATCTTACGGCTGTCTTTTTC 57.393 39.130 0.00 0.00 0.00 2.29
67 68 4.894784 TCATCTTACGGCTGTCTTTTTCT 58.105 39.130 0.00 0.00 0.00 2.52
68 69 4.929808 TCATCTTACGGCTGTCTTTTTCTC 59.070 41.667 0.00 0.00 0.00 2.87
69 70 4.602340 TCTTACGGCTGTCTTTTTCTCT 57.398 40.909 0.00 0.00 0.00 3.10
70 71 4.957296 TCTTACGGCTGTCTTTTTCTCTT 58.043 39.130 0.00 0.00 0.00 2.85
71 72 5.365619 TCTTACGGCTGTCTTTTTCTCTTT 58.634 37.500 0.00 0.00 0.00 2.52
72 73 5.820947 TCTTACGGCTGTCTTTTTCTCTTTT 59.179 36.000 0.00 0.00 0.00 2.27
73 74 4.983671 ACGGCTGTCTTTTTCTCTTTTT 57.016 36.364 0.00 0.00 0.00 1.94
98 99 9.838339 TTTCTTTCTAATCTAATCATCTCACCC 57.162 33.333 0.00 0.00 0.00 4.61
99 100 7.967908 TCTTTCTAATCTAATCATCTCACCCC 58.032 38.462 0.00 0.00 0.00 4.95
100 101 6.688073 TTCTAATCTAATCATCTCACCCCC 57.312 41.667 0.00 0.00 0.00 5.40
101 102 5.982391 TCTAATCTAATCATCTCACCCCCT 58.018 41.667 0.00 0.00 0.00 4.79
102 103 4.989875 AATCTAATCATCTCACCCCCTG 57.010 45.455 0.00 0.00 0.00 4.45
103 104 3.706389 TCTAATCATCTCACCCCCTGA 57.294 47.619 0.00 0.00 0.00 3.86
104 105 4.219392 TCTAATCATCTCACCCCCTGAT 57.781 45.455 0.00 0.00 0.00 2.90
105 106 4.570926 TCTAATCATCTCACCCCCTGATT 58.429 43.478 0.00 0.00 40.44 2.57
106 107 4.977739 TCTAATCATCTCACCCCCTGATTT 59.022 41.667 2.37 0.00 38.77 2.17
107 108 4.614967 AATCATCTCACCCCCTGATTTT 57.385 40.909 0.00 0.00 35.38 1.82
108 109 5.732331 AATCATCTCACCCCCTGATTTTA 57.268 39.130 0.00 0.00 35.38 1.52
109 110 5.732331 ATCATCTCACCCCCTGATTTTAA 57.268 39.130 0.00 0.00 0.00 1.52
110 111 5.116084 TCATCTCACCCCCTGATTTTAAG 57.884 43.478 0.00 0.00 0.00 1.85
111 112 4.079787 TCATCTCACCCCCTGATTTTAAGG 60.080 45.833 0.00 0.00 34.31 2.69
119 120 2.379005 CCTGATTTTAAGGGGTGAGGC 58.621 52.381 0.00 0.00 0.00 4.70
120 121 2.379005 CTGATTTTAAGGGGTGAGGCC 58.621 52.381 0.00 0.00 0.00 5.19
121 122 1.340600 TGATTTTAAGGGGTGAGGCCG 60.341 52.381 0.00 0.00 38.44 6.13
122 123 0.033503 ATTTTAAGGGGTGAGGCCGG 60.034 55.000 0.00 0.00 38.44 6.13
123 124 2.144859 TTTTAAGGGGTGAGGCCGGG 62.145 60.000 2.18 0.00 38.44 5.73
134 135 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
135 136 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
136 137 0.174845 GGCCGGGCCTTATTTTGTTC 59.825 55.000 30.86 0.00 46.69 3.18
137 138 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
138 139 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
139 140 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
140 141 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
141 142 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
142 143 3.447229 CGGGCCTTATTTTGTTCCAATCT 59.553 43.478 0.84 0.00 0.00 2.40
143 144 4.642885 CGGGCCTTATTTTGTTCCAATCTA 59.357 41.667 0.84 0.00 0.00 1.98
144 145 5.126384 CGGGCCTTATTTTGTTCCAATCTAA 59.874 40.000 0.84 0.00 0.00 2.10
145 146 6.183360 CGGGCCTTATTTTGTTCCAATCTAAT 60.183 38.462 0.84 0.00 0.00 1.73
146 147 7.210174 GGGCCTTATTTTGTTCCAATCTAATC 58.790 38.462 0.84 0.00 0.00 1.75
147 148 7.147742 GGGCCTTATTTTGTTCCAATCTAATCA 60.148 37.037 0.84 0.00 0.00 2.57
148 149 8.424133 GGCCTTATTTTGTTCCAATCTAATCAT 58.576 33.333 0.00 0.00 0.00 2.45
149 150 9.252962 GCCTTATTTTGTTCCAATCTAATCATG 57.747 33.333 0.00 0.00 0.00 3.07
154 155 6.421377 TTGTTCCAATCTAATCATGTCACG 57.579 37.500 0.00 0.00 0.00 4.35
155 156 5.487433 TGTTCCAATCTAATCATGTCACGT 58.513 37.500 0.00 0.00 0.00 4.49
156 157 6.635755 TGTTCCAATCTAATCATGTCACGTA 58.364 36.000 0.00 0.00 0.00 3.57
157 158 7.272244 TGTTCCAATCTAATCATGTCACGTAT 58.728 34.615 0.00 0.00 0.00 3.06
158 159 7.224557 TGTTCCAATCTAATCATGTCACGTATG 59.775 37.037 0.00 0.00 0.00 2.39
159 160 5.696270 TCCAATCTAATCATGTCACGTATGC 59.304 40.000 0.00 0.00 0.00 3.14
160 161 5.388786 CCAATCTAATCATGTCACGTATGCG 60.389 44.000 0.19 0.19 44.93 4.73
161 162 3.638484 TCTAATCATGTCACGTATGCGG 58.362 45.455 8.39 0.00 43.45 5.69
162 163 1.581934 AATCATGTCACGTATGCGGG 58.418 50.000 8.39 2.85 44.11 6.13
196 197 4.697756 CGTCGGGGAAGCAGGCAA 62.698 66.667 0.00 0.00 0.00 4.52
197 198 2.747855 GTCGGGGAAGCAGGCAAG 60.748 66.667 0.00 0.00 0.00 4.01
198 199 3.249189 TCGGGGAAGCAGGCAAGT 61.249 61.111 0.00 0.00 0.00 3.16
199 200 2.747855 CGGGGAAGCAGGCAAGTC 60.748 66.667 0.00 0.00 0.00 3.01
200 201 2.759795 GGGGAAGCAGGCAAGTCT 59.240 61.111 0.00 0.00 0.00 3.24
201 202 1.377856 GGGGAAGCAGGCAAGTCTC 60.378 63.158 0.00 0.00 0.00 3.36
202 203 1.743252 GGGAAGCAGGCAAGTCTCG 60.743 63.158 0.00 0.00 0.00 4.04
203 204 1.004440 GGAAGCAGGCAAGTCTCGT 60.004 57.895 0.00 0.00 0.00 4.18
204 205 1.016653 GGAAGCAGGCAAGTCTCGTC 61.017 60.000 0.00 0.00 0.00 4.20
205 206 1.004440 AAGCAGGCAAGTCTCGTCC 60.004 57.895 0.00 0.00 0.00 4.79
206 207 1.758440 AAGCAGGCAAGTCTCGTCCA 61.758 55.000 0.00 0.00 0.00 4.02
207 208 2.029844 GCAGGCAAGTCTCGTCCAC 61.030 63.158 0.00 0.00 0.00 4.02
208 209 1.668294 CAGGCAAGTCTCGTCCACT 59.332 57.895 0.00 0.00 0.00 4.00
209 210 0.034059 CAGGCAAGTCTCGTCCACTT 59.966 55.000 0.00 0.00 34.24 3.16
210 211 0.759346 AGGCAAGTCTCGTCCACTTT 59.241 50.000 0.00 0.00 31.40 2.66
211 212 1.141053 AGGCAAGTCTCGTCCACTTTT 59.859 47.619 0.00 0.00 31.40 2.27
212 213 1.531578 GGCAAGTCTCGTCCACTTTTC 59.468 52.381 0.00 0.00 31.40 2.29
213 214 2.484889 GCAAGTCTCGTCCACTTTTCT 58.515 47.619 0.00 0.00 31.40 2.52
214 215 2.872858 GCAAGTCTCGTCCACTTTTCTT 59.127 45.455 0.00 0.00 31.40 2.52
215 216 4.056050 GCAAGTCTCGTCCACTTTTCTTA 58.944 43.478 0.00 0.00 31.40 2.10
216 217 4.691216 GCAAGTCTCGTCCACTTTTCTTAT 59.309 41.667 0.00 0.00 31.40 1.73
217 218 5.867716 GCAAGTCTCGTCCACTTTTCTTATA 59.132 40.000 0.00 0.00 31.40 0.98
218 219 6.535508 GCAAGTCTCGTCCACTTTTCTTATAT 59.464 38.462 0.00 0.00 31.40 0.86
219 220 7.705325 GCAAGTCTCGTCCACTTTTCTTATATA 59.295 37.037 0.00 0.00 31.40 0.86
220 221 9.021863 CAAGTCTCGTCCACTTTTCTTATATAC 57.978 37.037 0.00 0.00 31.40 1.47
221 222 7.416022 AGTCTCGTCCACTTTTCTTATATACG 58.584 38.462 0.00 0.00 0.00 3.06
222 223 7.066766 AGTCTCGTCCACTTTTCTTATATACGT 59.933 37.037 0.00 0.00 0.00 3.57
223 224 7.375544 GTCTCGTCCACTTTTCTTATATACGTC 59.624 40.741 0.00 0.00 0.00 4.34
224 225 6.498304 TCGTCCACTTTTCTTATATACGTCC 58.502 40.000 0.00 0.00 0.00 4.79
225 226 5.689068 CGTCCACTTTTCTTATATACGTCCC 59.311 44.000 0.00 0.00 0.00 4.46
226 227 6.576185 GTCCACTTTTCTTATATACGTCCCA 58.424 40.000 0.00 0.00 0.00 4.37
227 228 6.478016 GTCCACTTTTCTTATATACGTCCCAC 59.522 42.308 0.00 0.00 0.00 4.61
228 229 5.756833 CCACTTTTCTTATATACGTCCCACC 59.243 44.000 0.00 0.00 0.00 4.61
229 230 5.756833 CACTTTTCTTATATACGTCCCACCC 59.243 44.000 0.00 0.00 0.00 4.61
230 231 5.664457 ACTTTTCTTATATACGTCCCACCCT 59.336 40.000 0.00 0.00 0.00 4.34
231 232 6.157471 ACTTTTCTTATATACGTCCCACCCTT 59.843 38.462 0.00 0.00 0.00 3.95
232 233 6.564557 TTTCTTATATACGTCCCACCCTTT 57.435 37.500 0.00 0.00 0.00 3.11
233 234 5.796424 TCTTATATACGTCCCACCCTTTC 57.204 43.478 0.00 0.00 0.00 2.62
234 235 4.590222 TCTTATATACGTCCCACCCTTTCC 59.410 45.833 0.00 0.00 0.00 3.13
235 236 2.555732 TATACGTCCCACCCTTTCCT 57.444 50.000 0.00 0.00 0.00 3.36
236 237 1.665137 ATACGTCCCACCCTTTCCTT 58.335 50.000 0.00 0.00 0.00 3.36
237 238 1.437397 TACGTCCCACCCTTTCCTTT 58.563 50.000 0.00 0.00 0.00 3.11
238 239 0.554305 ACGTCCCACCCTTTCCTTTT 59.446 50.000 0.00 0.00 0.00 2.27
239 240 1.244816 CGTCCCACCCTTTCCTTTTC 58.755 55.000 0.00 0.00 0.00 2.29
240 241 1.629043 GTCCCACCCTTTCCTTTTCC 58.371 55.000 0.00 0.00 0.00 3.13
241 242 1.147191 GTCCCACCCTTTCCTTTTCCT 59.853 52.381 0.00 0.00 0.00 3.36
242 243 2.377531 GTCCCACCCTTTCCTTTTCCTA 59.622 50.000 0.00 0.00 0.00 2.94
243 244 3.011369 GTCCCACCCTTTCCTTTTCCTAT 59.989 47.826 0.00 0.00 0.00 2.57
244 245 3.665618 TCCCACCCTTTCCTTTTCCTATT 59.334 43.478 0.00 0.00 0.00 1.73
245 246 4.108942 TCCCACCCTTTCCTTTTCCTATTT 59.891 41.667 0.00 0.00 0.00 1.40
246 247 4.222810 CCCACCCTTTCCTTTTCCTATTTG 59.777 45.833 0.00 0.00 0.00 2.32
247 248 5.083821 CCACCCTTTCCTTTTCCTATTTGA 58.916 41.667 0.00 0.00 0.00 2.69
248 249 5.721480 CCACCCTTTCCTTTTCCTATTTGAT 59.279 40.000 0.00 0.00 0.00 2.57
249 250 6.213397 CCACCCTTTCCTTTTCCTATTTGATT 59.787 38.462 0.00 0.00 0.00 2.57
250 251 7.256655 CCACCCTTTCCTTTTCCTATTTGATTT 60.257 37.037 0.00 0.00 0.00 2.17
251 252 8.156820 CACCCTTTCCTTTTCCTATTTGATTTT 58.843 33.333 0.00 0.00 0.00 1.82
252 253 8.723365 ACCCTTTCCTTTTCCTATTTGATTTTT 58.277 29.630 0.00 0.00 0.00 1.94
271 272 5.333566 TTTTTCCCTACCATCTCAGGTTT 57.666 39.130 0.00 0.00 43.08 3.27
272 273 5.333566 TTTTCCCTACCATCTCAGGTTTT 57.666 39.130 0.00 0.00 43.08 2.43
273 274 5.333566 TTTCCCTACCATCTCAGGTTTTT 57.666 39.130 0.00 0.00 43.08 1.94
274 275 4.569719 TCCCTACCATCTCAGGTTTTTC 57.430 45.455 0.00 0.00 43.08 2.29
275 276 3.913799 TCCCTACCATCTCAGGTTTTTCA 59.086 43.478 0.00 0.00 43.08 2.69
276 277 4.010349 CCCTACCATCTCAGGTTTTTCAC 58.990 47.826 0.00 0.00 43.08 3.18
289 290 4.820897 GGTTTTTCACCCATTCATTCTCC 58.179 43.478 0.00 0.00 40.19 3.71
290 291 4.322725 GGTTTTTCACCCATTCATTCTCCC 60.323 45.833 0.00 0.00 40.19 4.30
291 292 4.402616 TTTTCACCCATTCATTCTCCCT 57.597 40.909 0.00 0.00 0.00 4.20
292 293 5.528600 TTTTCACCCATTCATTCTCCCTA 57.471 39.130 0.00 0.00 0.00 3.53
293 294 5.528600 TTTCACCCATTCATTCTCCCTAA 57.471 39.130 0.00 0.00 0.00 2.69
294 295 5.528600 TTCACCCATTCATTCTCCCTAAA 57.471 39.130 0.00 0.00 0.00 1.85
295 296 5.528600 TCACCCATTCATTCTCCCTAAAA 57.471 39.130 0.00 0.00 0.00 1.52
296 297 6.091076 TCACCCATTCATTCTCCCTAAAAT 57.909 37.500 0.00 0.00 0.00 1.82
297 298 7.219601 TCACCCATTCATTCTCCCTAAAATA 57.780 36.000 0.00 0.00 0.00 1.40
298 299 7.290061 TCACCCATTCATTCTCCCTAAAATAG 58.710 38.462 0.00 0.00 0.00 1.73
299 300 7.128728 TCACCCATTCATTCTCCCTAAAATAGA 59.871 37.037 0.00 0.00 0.00 1.98
300 301 7.779798 CACCCATTCATTCTCCCTAAAATAGAA 59.220 37.037 0.00 0.00 34.00 2.10
301 302 8.514504 ACCCATTCATTCTCCCTAAAATAGAAT 58.485 33.333 0.00 0.00 39.87 2.40
302 303 9.018582 CCCATTCATTCTCCCTAAAATAGAATC 57.981 37.037 0.00 0.00 37.76 2.52
303 304 9.578576 CCATTCATTCTCCCTAAAATAGAATCA 57.421 33.333 0.00 0.00 37.76 2.57
311 312 9.838339 TCTCCCTAAAATAGAATCAATTGTCTC 57.162 33.333 5.13 3.56 0.00 3.36
312 313 9.618890 CTCCCTAAAATAGAATCAATTGTCTCA 57.381 33.333 5.13 0.00 0.00 3.27
383 384 8.276252 TCATTAAATCCTTACCAAGTAAGTGC 57.724 34.615 12.25 0.00 42.56 4.40
384 385 8.107095 TCATTAAATCCTTACCAAGTAAGTGCT 58.893 33.333 12.25 0.00 42.56 4.40
385 386 8.739972 CATTAAATCCTTACCAAGTAAGTGCTT 58.260 33.333 12.25 5.90 42.56 3.91
386 387 9.969001 ATTAAATCCTTACCAAGTAAGTGCTTA 57.031 29.630 12.25 5.16 42.56 3.09
387 388 9.796180 TTAAATCCTTACCAAGTAAGTGCTTAA 57.204 29.630 12.25 9.42 42.56 1.85
388 389 7.683437 AATCCTTACCAAGTAAGTGCTTAAC 57.317 36.000 12.25 0.00 42.56 2.01
389 390 6.177310 TCCTTACCAAGTAAGTGCTTAACA 57.823 37.500 12.25 0.00 42.56 2.41
390 391 6.593807 TCCTTACCAAGTAAGTGCTTAACAA 58.406 36.000 12.25 0.00 42.56 2.83
391 392 7.228590 TCCTTACCAAGTAAGTGCTTAACAAT 58.771 34.615 12.25 0.00 42.56 2.71
392 393 8.377034 TCCTTACCAAGTAAGTGCTTAACAATA 58.623 33.333 12.25 0.00 42.56 1.90
393 394 9.005777 CCTTACCAAGTAAGTGCTTAACAATAA 57.994 33.333 12.25 0.00 42.56 1.40
397 398 9.691362 ACCAAGTAAGTGCTTAACAATAAAATG 57.309 29.630 0.00 0.00 0.00 2.32
398 399 9.139174 CCAAGTAAGTGCTTAACAATAAAATGG 57.861 33.333 0.00 0.00 0.00 3.16
399 400 8.647226 CAAGTAAGTGCTTAACAATAAAATGGC 58.353 33.333 0.00 0.00 0.00 4.40
400 401 7.891561 AGTAAGTGCTTAACAATAAAATGGCA 58.108 30.769 0.00 0.00 0.00 4.92
401 402 8.028938 AGTAAGTGCTTAACAATAAAATGGCAG 58.971 33.333 0.00 0.00 0.00 4.85
402 403 6.345096 AGTGCTTAACAATAAAATGGCAGT 57.655 33.333 0.00 0.00 0.00 4.40
403 404 6.758254 AGTGCTTAACAATAAAATGGCAGTT 58.242 32.000 0.00 0.00 0.00 3.16
404 405 7.891561 AGTGCTTAACAATAAAATGGCAGTTA 58.108 30.769 0.00 0.00 0.00 2.24
405 406 8.364142 AGTGCTTAACAATAAAATGGCAGTTAA 58.636 29.630 0.00 3.41 32.50 2.01
406 407 8.983724 GTGCTTAACAATAAAATGGCAGTTAAA 58.016 29.630 0.00 0.00 32.91 1.52
407 408 9.547753 TGCTTAACAATAAAATGGCAGTTAAAA 57.452 25.926 0.00 0.00 32.91 1.52
420 421 9.567848 AATGGCAGTTAAAAATTATAACGACTG 57.432 29.630 0.00 0.00 38.11 3.51
432 433 9.783256 AAATTATAACGACTGCATAGAAAAACC 57.217 29.630 0.00 0.00 0.00 3.27
433 434 8.732746 ATTATAACGACTGCATAGAAAAACCT 57.267 30.769 0.00 0.00 0.00 3.50
434 435 4.749245 AACGACTGCATAGAAAAACCTG 57.251 40.909 0.00 0.00 0.00 4.00
435 436 2.484264 ACGACTGCATAGAAAAACCTGC 59.516 45.455 0.00 0.00 35.21 4.85
436 437 2.744202 CGACTGCATAGAAAAACCTGCT 59.256 45.455 0.00 0.00 35.66 4.24
437 438 3.932710 CGACTGCATAGAAAAACCTGCTA 59.067 43.478 0.00 0.00 35.66 3.49
438 439 4.391830 CGACTGCATAGAAAAACCTGCTAA 59.608 41.667 0.00 0.00 35.66 3.09
439 440 5.446473 CGACTGCATAGAAAAACCTGCTAAG 60.446 44.000 0.00 0.00 35.66 2.18
440 441 5.560724 ACTGCATAGAAAAACCTGCTAAGA 58.439 37.500 0.00 0.00 35.66 2.10
441 442 6.183347 ACTGCATAGAAAAACCTGCTAAGAT 58.817 36.000 0.00 0.00 35.66 2.40
442 443 6.660949 ACTGCATAGAAAAACCTGCTAAGATT 59.339 34.615 0.00 0.00 35.66 2.40
443 444 7.177392 ACTGCATAGAAAAACCTGCTAAGATTT 59.823 33.333 0.00 0.00 35.66 2.17
444 445 7.895759 TGCATAGAAAAACCTGCTAAGATTTT 58.104 30.769 0.00 0.00 35.66 1.82
445 446 9.019656 TGCATAGAAAAACCTGCTAAGATTTTA 57.980 29.630 0.00 0.00 35.66 1.52
446 447 9.508567 GCATAGAAAAACCTGCTAAGATTTTAG 57.491 33.333 0.00 0.00 39.44 1.85
485 486 8.718102 ATAATAATAGATGTACATTCACGGGC 57.282 34.615 10.30 0.00 0.00 6.13
486 487 4.689612 AATAGATGTACATTCACGGGCT 57.310 40.909 10.30 3.10 0.00 5.19
487 488 5.801531 AATAGATGTACATTCACGGGCTA 57.198 39.130 10.30 5.31 0.00 3.93
488 489 5.801531 ATAGATGTACATTCACGGGCTAA 57.198 39.130 10.30 0.00 0.00 3.09
489 490 4.689612 AGATGTACATTCACGGGCTAAT 57.310 40.909 10.30 0.00 0.00 1.73
490 491 4.632153 AGATGTACATTCACGGGCTAATC 58.368 43.478 10.30 0.00 0.00 1.75
491 492 4.345257 AGATGTACATTCACGGGCTAATCT 59.655 41.667 10.30 0.00 0.00 2.40
492 493 5.538813 AGATGTACATTCACGGGCTAATCTA 59.461 40.000 10.30 0.00 0.00 1.98
493 494 4.940463 TGTACATTCACGGGCTAATCTAC 58.060 43.478 0.00 0.00 0.00 2.59
494 495 4.647853 TGTACATTCACGGGCTAATCTACT 59.352 41.667 0.00 0.00 0.00 2.57
495 496 5.829391 TGTACATTCACGGGCTAATCTACTA 59.171 40.000 0.00 0.00 0.00 1.82
496 497 5.455056 ACATTCACGGGCTAATCTACTAG 57.545 43.478 0.00 0.00 0.00 2.57
497 498 5.138276 ACATTCACGGGCTAATCTACTAGA 58.862 41.667 0.00 0.00 0.00 2.43
498 499 5.009811 ACATTCACGGGCTAATCTACTAGAC 59.990 44.000 0.00 0.00 0.00 2.59
499 500 4.434545 TCACGGGCTAATCTACTAGACT 57.565 45.455 0.00 0.00 0.00 3.24
500 501 5.557576 TCACGGGCTAATCTACTAGACTA 57.442 43.478 0.00 0.00 0.00 2.59
501 502 6.124316 TCACGGGCTAATCTACTAGACTAT 57.876 41.667 0.00 0.00 0.00 2.12
502 503 6.540995 TCACGGGCTAATCTACTAGACTATT 58.459 40.000 0.00 0.00 0.00 1.73
503 504 7.002879 TCACGGGCTAATCTACTAGACTATTT 58.997 38.462 0.00 0.00 0.00 1.40
504 505 8.159447 TCACGGGCTAATCTACTAGACTATTTA 58.841 37.037 0.00 0.00 0.00 1.40
505 506 8.958506 CACGGGCTAATCTACTAGACTATTTAT 58.041 37.037 0.00 0.00 0.00 1.40
506 507 9.531158 ACGGGCTAATCTACTAGACTATTTATT 57.469 33.333 0.00 0.00 0.00 1.40
518 519 9.826574 ACTAGACTATTTATTATTCCGTTGCAA 57.173 29.630 0.00 0.00 0.00 4.08
521 522 8.076178 AGACTATTTATTATTCCGTTGCAATGC 58.924 33.333 13.42 0.00 0.00 3.56
522 523 7.711846 ACTATTTATTATTCCGTTGCAATGCA 58.288 30.769 13.42 2.72 36.47 3.96
523 524 8.359642 ACTATTTATTATTCCGTTGCAATGCAT 58.640 29.630 9.39 9.53 38.76 3.96
524 525 9.838975 CTATTTATTATTCCGTTGCAATGCATA 57.161 29.630 9.39 8.60 38.76 3.14
525 526 8.746922 ATTTATTATTCCGTTGCAATGCATAG 57.253 30.769 9.39 6.10 38.76 2.23
526 527 7.503521 TTATTATTCCGTTGCAATGCATAGA 57.496 32.000 9.39 3.36 38.76 1.98
527 528 3.698029 ATTCCGTTGCAATGCATAGAC 57.302 42.857 9.39 3.30 38.76 2.59
528 529 2.106477 TCCGTTGCAATGCATAGACA 57.894 45.000 9.39 0.00 38.76 3.41
529 530 2.431454 TCCGTTGCAATGCATAGACAA 58.569 42.857 9.39 1.97 38.76 3.18
530 531 3.016031 TCCGTTGCAATGCATAGACAAT 58.984 40.909 9.39 0.00 38.76 2.71
531 532 3.443329 TCCGTTGCAATGCATAGACAATT 59.557 39.130 9.39 0.00 38.76 2.32
532 533 3.548668 CCGTTGCAATGCATAGACAATTG 59.451 43.478 9.39 3.24 38.76 2.32
533 534 4.168014 CGTTGCAATGCATAGACAATTGT 58.832 39.130 11.78 11.78 38.76 2.71
534 535 4.263677 CGTTGCAATGCATAGACAATTGTC 59.736 41.667 27.69 27.69 40.97 3.18
535 536 5.404946 GTTGCAATGCATAGACAATTGTCT 58.595 37.500 36.21 36.21 45.34 3.41
574 575 0.600057 AACGTAGGGTTCTGTCGTCC 59.400 55.000 0.00 0.00 35.30 4.79
575 576 0.538057 ACGTAGGGTTCTGTCGTCCA 60.538 55.000 0.00 0.00 32.72 4.02
576 577 0.815734 CGTAGGGTTCTGTCGTCCAT 59.184 55.000 0.00 0.00 0.00 3.41
577 578 1.202268 CGTAGGGTTCTGTCGTCCATC 60.202 57.143 0.00 0.00 0.00 3.51
578 579 2.100989 GTAGGGTTCTGTCGTCCATCT 58.899 52.381 0.00 0.00 0.00 2.90
579 580 1.187087 AGGGTTCTGTCGTCCATCTC 58.813 55.000 0.00 0.00 0.00 2.75
580 581 0.179134 GGGTTCTGTCGTCCATCTCG 60.179 60.000 0.00 0.00 0.00 4.04
601 602 7.158697 TCTCGTTCTTCATCTAACATTTTCCA 58.841 34.615 0.00 0.00 0.00 3.53
715 719 6.918892 AAATCCAAGTTTTGTTTTGGTAGC 57.081 33.333 3.46 0.00 43.43 3.58
717 721 5.669164 TCCAAGTTTTGTTTTGGTAGCTT 57.331 34.783 0.00 0.00 43.43 3.74
720 724 7.787028 TCCAAGTTTTGTTTTGGTAGCTTAAT 58.213 30.769 0.00 0.00 43.43 1.40
728 732 0.179094 TGGTAGCTTAATCACGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
770 779 6.500589 TTTAGAGGGAAGGTAATCATGAGG 57.499 41.667 0.09 0.00 0.00 3.86
779 788 6.270231 GGAAGGTAATCATGAGGTACCATACT 59.730 42.308 27.84 15.82 39.89 2.12
811 1107 4.243008 TCTGTTGCAACCCGCGGA 62.243 61.111 30.73 9.56 46.97 5.54
851 1147 3.136626 CGGGATCCCTCTCCTGTTAATTT 59.863 47.826 28.42 0.00 36.99 1.82
854 1150 5.607171 GGGATCCCTCTCCTGTTAATTTCTA 59.393 44.000 24.69 0.00 35.50 2.10
855 1151 6.101296 GGGATCCCTCTCCTGTTAATTTCTAA 59.899 42.308 24.69 0.00 35.50 2.10
916 1215 1.268794 CCTCGTCTTATCTGCGACTGG 60.269 57.143 0.00 0.00 0.00 4.00
933 1232 4.452733 GACTGAGGTTCGGGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
970 1269 3.719144 GGGTTTTGACGCGACGGG 61.719 66.667 15.93 10.72 0.00 5.28
1100 1399 2.742372 CCTTCCTCGCCCGTTGTG 60.742 66.667 0.00 0.00 0.00 3.33
1211 1510 6.046593 TGCTATTGCATGTACTAGTAACCAC 58.953 40.000 3.61 0.00 45.31 4.16
1224 1523 7.198306 ACTAGTAACCACAACTATTTTGTGC 57.802 36.000 10.95 0.00 46.11 4.57
1264 1570 4.513318 GCTTCATCACTGGCTATAGGAAAC 59.487 45.833 1.04 0.00 0.00 2.78
1305 1611 3.733337 AGGATAATTCTCGTGATGGCAC 58.267 45.455 0.00 0.00 41.67 5.01
1371 1677 2.005971 ACGCGAGTAATGAAAGACCC 57.994 50.000 15.93 0.00 46.88 4.46
1373 1679 1.664873 GCGAGTAATGAAAGACCCCC 58.335 55.000 0.00 0.00 0.00 5.40
1385 1691 1.136329 AGACCCCCACTGCACAGATT 61.136 55.000 4.31 0.00 0.00 2.40
1386 1692 0.962356 GACCCCCACTGCACAGATTG 60.962 60.000 4.31 0.00 0.00 2.67
1394 1700 2.094906 CACTGCACAGATTGGATTGGTG 60.095 50.000 4.31 0.00 0.00 4.17
1445 1759 3.919804 TGATTGTTTTAGCGCTGCAATTC 59.080 39.130 22.90 16.43 30.96 2.17
1446 1760 3.361794 TTGTTTTAGCGCTGCAATTCA 57.638 38.095 22.90 11.80 0.00 2.57
1462 1780 6.554419 TGCAATTCATACATTACTGCTTGTC 58.446 36.000 0.00 0.00 0.00 3.18
1478 1796 4.141711 TGCTTGTCTTCTGTTCCAACTACT 60.142 41.667 0.00 0.00 0.00 2.57
1502 1820 4.163427 TCTCTGTTCCCAGATTCAACTCT 58.837 43.478 0.00 0.00 46.38 3.24
1511 1829 1.902508 AGATTCAACTCTCCGGCAGAA 59.097 47.619 0.00 0.00 0.00 3.02
1542 1860 9.847224 ACCCCTTGTTATCACATTATTAAGTAG 57.153 33.333 0.00 0.00 31.06 2.57
1557 1875 3.470645 AAGTAGTTTTGAGACAGGCGT 57.529 42.857 0.00 0.00 0.00 5.68
1616 1944 7.392393 AGCATGCATCATAAAGCTTCACATATA 59.608 33.333 21.98 0.00 0.00 0.86
1653 1981 0.105658 AAGTCGGCCCCTGAGCTATA 60.106 55.000 0.00 0.00 0.00 1.31
1655 1983 0.977395 GTCGGCCCCTGAGCTATAAT 59.023 55.000 0.00 0.00 0.00 1.28
1658 1986 2.565834 TCGGCCCCTGAGCTATAATTAC 59.434 50.000 0.00 0.00 0.00 1.89
1680 2008 6.893020 ACAAGGGTAGATTTCTAGATTGGT 57.107 37.500 0.00 0.00 0.00 3.67
1722 2050 9.309516 CATCCATCAAGTTTCATTTTTATCAGG 57.690 33.333 0.00 0.00 0.00 3.86
1739 2067 9.483489 TTTTATCAGGACAGTAACTATGACCTA 57.517 33.333 0.00 0.00 40.20 3.08
1740 2068 9.483489 TTTATCAGGACAGTAACTATGACCTAA 57.517 33.333 0.00 0.00 40.20 2.69
1741 2069 9.656323 TTATCAGGACAGTAACTATGACCTAAT 57.344 33.333 0.00 0.00 40.20 1.73
1793 2121 4.530875 ACTTGACATCATGATTCCCTTCC 58.469 43.478 5.16 0.00 0.00 3.46
1843 2177 3.772025 ACAATACCTCCCTTCTCTGTGAG 59.228 47.826 0.00 0.00 0.00 3.51
1844 2178 4.026744 CAATACCTCCCTTCTCTGTGAGA 58.973 47.826 0.00 0.00 36.86 3.27
1845 2179 1.931635 ACCTCCCTTCTCTGTGAGAC 58.068 55.000 0.00 0.00 38.51 3.36
1866 2200 2.357009 CTGTGATCCATTTGGCTACAGC 59.643 50.000 11.84 0.00 35.26 4.40
1867 2201 2.290832 TGTGATCCATTTGGCTACAGCA 60.291 45.455 3.24 0.00 44.36 4.41
1868 2202 2.357009 GTGATCCATTTGGCTACAGCAG 59.643 50.000 3.24 0.00 44.36 4.24
1869 2203 2.239402 TGATCCATTTGGCTACAGCAGA 59.761 45.455 3.24 0.00 44.36 4.26
1870 2204 3.117776 TGATCCATTTGGCTACAGCAGAT 60.118 43.478 3.24 0.00 44.36 2.90
1871 2205 4.102996 TGATCCATTTGGCTACAGCAGATA 59.897 41.667 3.24 0.00 44.36 1.98
1872 2206 4.712051 TCCATTTGGCTACAGCAGATAT 57.288 40.909 3.24 0.00 44.36 1.63
1873 2207 5.052693 TCCATTTGGCTACAGCAGATATT 57.947 39.130 3.24 0.00 44.36 1.28
1874 2208 5.065914 TCCATTTGGCTACAGCAGATATTC 58.934 41.667 3.24 0.00 44.36 1.75
1875 2209 4.823442 CCATTTGGCTACAGCAGATATTCA 59.177 41.667 3.24 0.00 44.36 2.57
1876 2210 5.475909 CCATTTGGCTACAGCAGATATTCAT 59.524 40.000 3.24 0.00 44.36 2.57
1877 2211 6.379386 CATTTGGCTACAGCAGATATTCATG 58.621 40.000 3.24 0.00 44.36 3.07
1878 2212 4.694760 TGGCTACAGCAGATATTCATGT 57.305 40.909 3.24 0.00 44.36 3.21
1879 2213 5.806654 TGGCTACAGCAGATATTCATGTA 57.193 39.130 3.24 0.00 44.36 2.29
1880 2214 5.541845 TGGCTACAGCAGATATTCATGTAC 58.458 41.667 3.24 0.00 44.36 2.90
1881 2215 5.070313 TGGCTACAGCAGATATTCATGTACA 59.930 40.000 0.00 0.00 44.36 2.90
1882 2216 6.169094 GGCTACAGCAGATATTCATGTACAT 58.831 40.000 1.41 1.41 44.36 2.29
1883 2217 7.039082 TGGCTACAGCAGATATTCATGTACATA 60.039 37.037 8.32 0.00 44.36 2.29
1884 2218 7.984050 GGCTACAGCAGATATTCATGTACATAT 59.016 37.037 8.32 2.04 44.36 1.78
1885 2219 9.029243 GCTACAGCAGATATTCATGTACATATC 57.971 37.037 8.32 8.05 41.59 1.63
1909 2402 8.877864 TCCTTCTATGTGTATTGGAAATTTGT 57.122 30.769 0.00 0.00 0.00 2.83
1918 2411 7.601886 TGTGTATTGGAAATTTGTAATGCTTGG 59.398 33.333 0.00 0.00 0.00 3.61
1933 2430 9.910267 TGTAATGCTTGGCAATAGATATATCAT 57.090 29.630 15.08 4.05 43.62 2.45
1947 2444 7.710676 AGATATATCATAGGACTGTCACCAC 57.289 40.000 15.08 0.00 0.00 4.16
1948 2445 7.241628 AGATATATCATAGGACTGTCACCACA 58.758 38.462 15.08 0.00 0.00 4.17
1949 2446 7.898100 AGATATATCATAGGACTGTCACCACAT 59.102 37.037 15.08 0.00 0.00 3.21
1950 2447 6.753913 ATATCATAGGACTGTCACCACATT 57.246 37.500 10.38 0.00 0.00 2.71
1952 2449 6.560003 ATCATAGGACTGTCACCACATTTA 57.440 37.500 10.38 0.00 0.00 1.40
1955 2452 8.262601 TCATAGGACTGTCACCACATTTATAT 57.737 34.615 10.38 0.00 0.00 0.86
1960 2457 7.565398 AGGACTGTCACCACATTTATATAGTCT 59.435 37.037 10.38 0.00 0.00 3.24
1963 2460 9.642343 ACTGTCACCACATTTATATAGTCTAGA 57.358 33.333 0.00 0.00 0.00 2.43
2090 3380 0.391228 TGCTGCCTGTTTGTCTCGTA 59.609 50.000 0.00 0.00 0.00 3.43
2098 3388 3.741344 CCTGTTTGTCTCGTACCTTTCTG 59.259 47.826 0.00 0.00 0.00 3.02
2129 3422 4.260170 GAGATGCCATCCCAATCTCATAC 58.740 47.826 0.00 0.00 38.06 2.39
2385 3697 3.587498 TCCTATCTGATGGGAACGGAAT 58.413 45.455 19.12 0.00 36.94 3.01
2428 3740 0.038166 TTGACTGTGGCTTCCATCCC 59.962 55.000 0.00 0.00 35.28 3.85
2740 4056 3.258372 TGCGACTGAAGAACCTAGATGTT 59.742 43.478 0.00 0.00 0.00 2.71
2869 4232 8.462016 ACCTTTTGTGATTATTCAGTAGCATTC 58.538 33.333 0.00 0.00 30.85 2.67
3061 4433 1.841302 ATGCTGCTCCGTCCTTGGAA 61.841 55.000 0.00 0.00 37.64 3.53
3441 4824 2.234143 CAGATCTACCAGATGCTCCGA 58.766 52.381 0.00 0.00 34.53 4.55
3641 5025 5.824421 AGGAAAGACAACATTCAGATCCAT 58.176 37.500 0.00 0.00 0.00 3.41
3643 5027 7.405292 AGGAAAGACAACATTCAGATCCATAA 58.595 34.615 0.00 0.00 0.00 1.90
3676 5060 3.973657 GCGTTACTAATGCTAGCTGGTA 58.026 45.455 17.23 6.19 40.27 3.25
3747 5131 1.133513 AGGGAGTGGCATGTTGTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
3801 5190 0.365523 CTGTTGTACATCGAACCGCG 59.634 55.000 0.00 0.00 42.69 6.46
3815 5204 0.460284 ACCGCGATTTCGAGATGCTT 60.460 50.000 8.23 0.00 41.67 3.91
3856 5245 1.084289 GGGTGTTTGATAGCGGTCAC 58.916 55.000 0.00 0.00 0.00 3.67
3895 5284 2.743636 TGAGAAACAAGACCTAGCGG 57.256 50.000 0.00 0.00 0.00 5.52
3896 5285 1.337823 TGAGAAACAAGACCTAGCGGC 60.338 52.381 0.00 0.00 0.00 6.53
3897 5286 0.036294 AGAAACAAGACCTAGCGGCC 60.036 55.000 0.00 0.00 0.00 6.13
3898 5287 0.036294 GAAACAAGACCTAGCGGCCT 60.036 55.000 0.00 0.00 0.00 5.19
3907 5298 1.750930 CTAGCGGCCTGATGTGGAT 59.249 57.895 0.00 0.00 0.00 3.41
3932 5323 5.618056 AATATGCATCTAATTGCTCGTGG 57.382 39.130 0.19 0.00 43.18 4.94
3951 5343 0.037697 GGACACATAGACACACGGCA 60.038 55.000 0.00 0.00 0.00 5.69
3964 5356 3.068873 ACACACGGCACCATTGTTTTAAT 59.931 39.130 0.00 0.00 0.00 1.40
3965 5357 4.054671 CACACGGCACCATTGTTTTAATT 58.945 39.130 0.00 0.00 0.00 1.40
3967 5359 4.747605 ACACGGCACCATTGTTTTAATTTC 59.252 37.500 0.00 0.00 0.00 2.17
3971 5366 6.540551 ACGGCACCATTGTTTTAATTTCTTTT 59.459 30.769 0.00 0.00 0.00 2.27
4082 5477 4.982916 AGACGGTTGAATATACGAGCAATC 59.017 41.667 0.00 0.00 0.00 2.67
4083 5478 4.056050 ACGGTTGAATATACGAGCAATCC 58.944 43.478 0.00 0.00 0.00 3.01
4211 5610 4.481368 TGGGTTCTTATTGCGACATACT 57.519 40.909 0.00 0.00 0.00 2.12
4213 5612 5.353938 TGGGTTCTTATTGCGACATACTAC 58.646 41.667 0.00 0.00 0.00 2.73
4231 5638 0.618458 ACTAGGCAGGCATTTTCGGA 59.382 50.000 0.00 0.00 0.00 4.55
4234 5641 1.378514 GGCAGGCATTTTCGGAGGA 60.379 57.895 0.00 0.00 0.00 3.71
4238 5645 2.436417 CAGGCATTTTCGGAGGAAAGA 58.564 47.619 0.00 0.00 42.72 2.52
4241 5648 2.159382 GCATTTTCGGAGGAAAGACCA 58.841 47.619 0.00 0.00 42.72 4.02
4257 5664 3.834732 CCAGTAGGTTTCGACCCTG 57.165 57.895 12.14 3.50 33.35 4.45
4258 5665 0.974383 CCAGTAGGTTTCGACCCTGT 59.026 55.000 12.14 0.00 33.35 4.00
4259 5666 1.346722 CCAGTAGGTTTCGACCCTGTT 59.653 52.381 12.14 0.00 33.35 3.16
4260 5667 2.612221 CCAGTAGGTTTCGACCCTGTTC 60.612 54.545 12.14 4.27 33.35 3.18
4261 5668 1.271656 AGTAGGTTTCGACCCTGTTCG 59.728 52.381 12.14 0.00 40.53 3.95
4262 5669 1.270550 GTAGGTTTCGACCCTGTTCGA 59.729 52.381 12.14 0.00 46.12 3.71
4270 5677 2.163815 TCGACCCTGTTCGAATTCTCTC 59.836 50.000 0.00 0.00 44.86 3.20
4271 5678 2.164624 CGACCCTGTTCGAATTCTCTCT 59.835 50.000 0.00 0.00 41.78 3.10
4272 5679 3.516615 GACCCTGTTCGAATTCTCTCTG 58.483 50.000 0.00 0.00 0.00 3.35
4273 5680 2.275318 CCCTGTTCGAATTCTCTCTGC 58.725 52.381 0.00 0.00 0.00 4.26
4275 5682 3.186119 CCTGTTCGAATTCTCTCTGCTC 58.814 50.000 0.00 0.00 0.00 4.26
4276 5683 3.186119 CTGTTCGAATTCTCTCTGCTCC 58.814 50.000 0.00 0.00 0.00 4.70
4277 5684 2.562738 TGTTCGAATTCTCTCTGCTCCA 59.437 45.455 0.00 0.00 0.00 3.86
4278 5685 2.926838 GTTCGAATTCTCTCTGCTCCAC 59.073 50.000 0.00 0.00 0.00 4.02
4279 5686 2.171003 TCGAATTCTCTCTGCTCCACA 58.829 47.619 3.52 0.00 0.00 4.17
4280 5687 2.562738 TCGAATTCTCTCTGCTCCACAA 59.437 45.455 3.52 0.00 0.00 3.33
4281 5688 3.006859 TCGAATTCTCTCTGCTCCACAAA 59.993 43.478 3.52 0.00 0.00 2.83
4283 5690 4.201792 CGAATTCTCTCTGCTCCACAAATG 60.202 45.833 3.52 0.00 0.00 2.32
4284 5691 2.105006 TCTCTCTGCTCCACAAATGC 57.895 50.000 0.00 0.00 0.00 3.56
4285 5692 1.348696 TCTCTCTGCTCCACAAATGCA 59.651 47.619 0.00 0.00 35.30 3.96
4288 5695 2.264124 CTGCTCCACAAATGCAGCT 58.736 52.632 0.00 0.00 45.76 4.24
4289 5696 0.601558 CTGCTCCACAAATGCAGCTT 59.398 50.000 0.00 0.00 45.76 3.74
4290 5697 0.599558 TGCTCCACAAATGCAGCTTC 59.400 50.000 0.00 0.00 32.76 3.86
4291 5698 0.108945 GCTCCACAAATGCAGCTTCC 60.109 55.000 0.00 0.00 0.00 3.46
4292 5699 0.169672 CTCCACAAATGCAGCTTCCG 59.830 55.000 0.00 0.00 0.00 4.30
4295 5702 1.401931 CCACAAATGCAGCTTCCGAAG 60.402 52.381 3.56 3.56 0.00 3.79
4310 5717 3.724914 GAAGCGGAGGGAGCGGAAG 62.725 68.421 0.00 0.00 40.04 3.46
4323 5730 3.231734 CGGAAGCACAATGACAGGA 57.768 52.632 0.00 0.00 0.00 3.86
4324 5731 1.081892 CGGAAGCACAATGACAGGAG 58.918 55.000 0.00 0.00 0.00 3.69
4325 5732 1.609061 CGGAAGCACAATGACAGGAGT 60.609 52.381 0.00 0.00 0.00 3.85
4326 5733 1.808945 GGAAGCACAATGACAGGAGTG 59.191 52.381 0.00 0.00 35.19 3.51
4327 5734 1.808945 GAAGCACAATGACAGGAGTGG 59.191 52.381 6.78 0.00 32.80 4.00
4330 5737 1.446907 CACAATGACAGGAGTGGCTC 58.553 55.000 0.00 0.00 30.05 4.70
4361 5768 0.165511 GAGTGCTGCTCTGCTTTTCG 59.834 55.000 9.20 0.00 40.98 3.46
4481 5889 1.799258 CTTGTTGCGGGCTTTCAGCT 61.799 55.000 0.00 0.00 41.99 4.24
4503 5911 2.541288 GACAGAGAGGTGTCGACGA 58.459 57.895 11.62 0.00 37.69 4.20
4504 5912 0.166379 GACAGAGAGGTGTCGACGAC 59.834 60.000 20.97 20.97 37.69 4.34
4505 5913 1.132844 CAGAGAGGTGTCGACGACG 59.867 63.158 22.06 0.00 34.95 5.12
4507 5915 3.664223 GAGAGGTGTCGACGACGGC 62.664 68.421 22.06 16.71 44.90 5.68
4508 5916 4.773117 GAGGTGTCGACGACGGCC 62.773 72.222 24.87 24.87 43.97 6.13
4537 5945 4.114997 CGGCGGCCTTGCGAAATT 62.115 61.111 18.34 0.00 35.06 1.82
4577 5985 3.122323 GCCCGTCGCGAAAATCCA 61.122 61.111 12.06 0.00 0.00 3.41
4586 5994 0.594110 GCGAAAATCCACACCCGAAA 59.406 50.000 0.00 0.00 0.00 3.46
4591 5999 5.462405 CGAAAATCCACACCCGAAAATTTA 58.538 37.500 0.00 0.00 0.00 1.40
4592 6000 5.921408 CGAAAATCCACACCCGAAAATTTAA 59.079 36.000 0.00 0.00 0.00 1.52
4593 6001 6.129035 CGAAAATCCACACCCGAAAATTTAAC 60.129 38.462 0.00 0.00 0.00 2.01
4594 6002 4.794278 ATCCACACCCGAAAATTTAACC 57.206 40.909 0.00 0.00 0.00 2.85
4595 6003 2.892215 TCCACACCCGAAAATTTAACCC 59.108 45.455 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.695747 GAGAGGGAGCAGGCAAGCC 62.696 68.421 2.02 2.02 34.23 4.35
3 4 2.124778 GAGAGGGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
5 6 0.326522 TATGGAGAGGGAGCAGGCAA 60.327 55.000 0.00 0.00 0.00 4.52
6 7 1.050988 GTATGGAGAGGGAGCAGGCA 61.051 60.000 0.00 0.00 0.00 4.75
7 8 0.762461 AGTATGGAGAGGGAGCAGGC 60.762 60.000 0.00 0.00 0.00 4.85
8 9 1.337118 GAGTATGGAGAGGGAGCAGG 58.663 60.000 0.00 0.00 0.00 4.85
9 10 1.337118 GGAGTATGGAGAGGGAGCAG 58.663 60.000 0.00 0.00 0.00 4.24
10 11 0.105453 GGGAGTATGGAGAGGGAGCA 60.105 60.000 0.00 0.00 0.00 4.26
11 12 1.182385 CGGGAGTATGGAGAGGGAGC 61.182 65.000 0.00 0.00 0.00 4.70
12 13 0.186386 ACGGGAGTATGGAGAGGGAG 59.814 60.000 0.00 0.00 44.60 4.30
13 14 2.329111 ACGGGAGTATGGAGAGGGA 58.671 57.895 0.00 0.00 44.60 4.20
27 28 3.622060 AAATGGGAGCACGGACGGG 62.622 63.158 0.00 0.00 0.00 5.28
28 29 2.046314 AAATGGGAGCACGGACGG 60.046 61.111 0.00 0.00 0.00 4.79
29 30 0.744414 ATGAAATGGGAGCACGGACG 60.744 55.000 0.00 0.00 0.00 4.79
30 31 1.017387 GATGAAATGGGAGCACGGAC 58.983 55.000 0.00 0.00 0.00 4.79
31 32 0.911769 AGATGAAATGGGAGCACGGA 59.088 50.000 0.00 0.00 0.00 4.69
32 33 1.755179 AAGATGAAATGGGAGCACGG 58.245 50.000 0.00 0.00 0.00 4.94
33 34 2.285220 CGTAAGATGAAATGGGAGCACG 59.715 50.000 0.00 0.00 43.02 5.34
34 35 2.614057 CCGTAAGATGAAATGGGAGCAC 59.386 50.000 0.00 0.00 43.02 4.40
35 36 2.917933 CCGTAAGATGAAATGGGAGCA 58.082 47.619 0.00 0.00 43.02 4.26
36 37 1.604278 GCCGTAAGATGAAATGGGAGC 59.396 52.381 0.00 0.00 43.02 4.70
37 38 2.874701 CAGCCGTAAGATGAAATGGGAG 59.125 50.000 0.00 0.00 43.02 4.30
38 39 2.238646 ACAGCCGTAAGATGAAATGGGA 59.761 45.455 0.00 0.00 43.02 4.37
39 40 2.614057 GACAGCCGTAAGATGAAATGGG 59.386 50.000 0.00 0.00 43.02 4.00
40 41 3.535561 AGACAGCCGTAAGATGAAATGG 58.464 45.455 0.00 0.00 43.02 3.16
41 42 5.551760 AAAGACAGCCGTAAGATGAAATG 57.448 39.130 0.00 0.00 43.02 2.32
42 43 6.431234 AGAAAAAGACAGCCGTAAGATGAAAT 59.569 34.615 0.00 0.00 43.02 2.17
43 44 5.763204 AGAAAAAGACAGCCGTAAGATGAAA 59.237 36.000 0.00 0.00 43.02 2.69
44 45 5.305585 AGAAAAAGACAGCCGTAAGATGAA 58.694 37.500 0.00 0.00 43.02 2.57
45 46 4.894784 AGAAAAAGACAGCCGTAAGATGA 58.105 39.130 0.00 0.00 43.02 2.92
46 47 4.932200 AGAGAAAAAGACAGCCGTAAGATG 59.068 41.667 0.00 0.00 43.02 2.90
47 48 5.153950 AGAGAAAAAGACAGCCGTAAGAT 57.846 39.130 0.00 0.00 43.02 2.40
48 49 4.602340 AGAGAAAAAGACAGCCGTAAGA 57.398 40.909 0.00 0.00 43.02 2.10
49 50 5.674933 AAAGAGAAAAAGACAGCCGTAAG 57.325 39.130 0.00 0.00 0.00 2.34
50 51 6.445357 AAAAAGAGAAAAAGACAGCCGTAA 57.555 33.333 0.00 0.00 0.00 3.18
52 53 4.983671 AAAAAGAGAAAAAGACAGCCGT 57.016 36.364 0.00 0.00 0.00 5.68
72 73 9.838339 GGGTGAGATGATTAGATTAGAAAGAAA 57.162 33.333 0.00 0.00 0.00 2.52
73 74 8.432805 GGGGTGAGATGATTAGATTAGAAAGAA 58.567 37.037 0.00 0.00 0.00 2.52
74 75 7.016661 GGGGGTGAGATGATTAGATTAGAAAGA 59.983 40.741 0.00 0.00 0.00 2.52
75 76 7.017056 AGGGGGTGAGATGATTAGATTAGAAAG 59.983 40.741 0.00 0.00 0.00 2.62
76 77 6.851836 AGGGGGTGAGATGATTAGATTAGAAA 59.148 38.462 0.00 0.00 0.00 2.52
77 78 6.270927 CAGGGGGTGAGATGATTAGATTAGAA 59.729 42.308 0.00 0.00 0.00 2.10
78 79 5.782331 CAGGGGGTGAGATGATTAGATTAGA 59.218 44.000 0.00 0.00 0.00 2.10
79 80 5.782331 TCAGGGGGTGAGATGATTAGATTAG 59.218 44.000 0.00 0.00 0.00 1.73
80 81 5.726560 TCAGGGGGTGAGATGATTAGATTA 58.273 41.667 0.00 0.00 0.00 1.75
81 82 4.570926 TCAGGGGGTGAGATGATTAGATT 58.429 43.478 0.00 0.00 0.00 2.40
82 83 4.219392 TCAGGGGGTGAGATGATTAGAT 57.781 45.455 0.00 0.00 0.00 1.98
83 84 3.706389 TCAGGGGGTGAGATGATTAGA 57.294 47.619 0.00 0.00 0.00 2.10
84 85 4.989875 AATCAGGGGGTGAGATGATTAG 57.010 45.455 0.00 0.00 39.85 1.73
85 86 5.732331 AAAATCAGGGGGTGAGATGATTA 57.268 39.130 0.15 0.00 40.54 1.75
86 87 4.614967 AAAATCAGGGGGTGAGATGATT 57.385 40.909 0.00 0.00 42.61 2.57
87 88 5.399497 CCTTAAAATCAGGGGGTGAGATGAT 60.399 44.000 0.00 0.00 39.07 2.45
88 89 4.079787 CCTTAAAATCAGGGGGTGAGATGA 60.080 45.833 0.00 0.00 39.07 2.92
89 90 4.210331 CCTTAAAATCAGGGGGTGAGATG 58.790 47.826 0.00 0.00 39.07 2.90
90 91 3.205282 CCCTTAAAATCAGGGGGTGAGAT 59.795 47.826 0.00 0.00 46.90 2.75
91 92 2.580783 CCCTTAAAATCAGGGGGTGAGA 59.419 50.000 0.00 0.00 46.90 3.27
92 93 3.018423 CCCTTAAAATCAGGGGGTGAG 57.982 52.381 0.00 0.00 46.90 3.51
99 100 2.379005 GCCTCACCCCTTAAAATCAGG 58.621 52.381 0.00 0.00 0.00 3.86
100 101 2.379005 GGCCTCACCCCTTAAAATCAG 58.621 52.381 0.00 0.00 0.00 2.90
101 102 1.340600 CGGCCTCACCCCTTAAAATCA 60.341 52.381 0.00 0.00 33.26 2.57
102 103 1.389555 CGGCCTCACCCCTTAAAATC 58.610 55.000 0.00 0.00 33.26 2.17
103 104 0.033503 CCGGCCTCACCCCTTAAAAT 60.034 55.000 0.00 0.00 33.26 1.82
104 105 1.381076 CCGGCCTCACCCCTTAAAA 59.619 57.895 0.00 0.00 33.26 1.52
105 106 2.608550 CCCGGCCTCACCCCTTAAA 61.609 63.158 0.00 0.00 33.26 1.52
106 107 3.012722 CCCGGCCTCACCCCTTAA 61.013 66.667 0.00 0.00 33.26 1.85
118 119 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
119 120 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
132 133 5.487433 ACGTGACATGATTAGATTGGAACA 58.513 37.500 0.00 0.00 0.00 3.18
133 134 7.567571 CATACGTGACATGATTAGATTGGAAC 58.432 38.462 0.00 0.00 0.00 3.62
134 135 6.202762 GCATACGTGACATGATTAGATTGGAA 59.797 38.462 0.00 0.00 0.00 3.53
135 136 5.696270 GCATACGTGACATGATTAGATTGGA 59.304 40.000 0.00 0.00 0.00 3.53
136 137 5.388786 CGCATACGTGACATGATTAGATTGG 60.389 44.000 0.00 0.00 33.53 3.16
137 138 5.388786 CCGCATACGTGACATGATTAGATTG 60.389 44.000 0.00 0.00 37.70 2.67
138 139 4.686091 CCGCATACGTGACATGATTAGATT 59.314 41.667 0.00 0.00 37.70 2.40
139 140 4.237724 CCGCATACGTGACATGATTAGAT 58.762 43.478 0.00 0.00 37.70 1.98
140 141 3.552068 CCCGCATACGTGACATGATTAGA 60.552 47.826 0.00 0.00 37.70 2.10
141 142 2.731451 CCCGCATACGTGACATGATTAG 59.269 50.000 0.00 0.00 37.70 1.73
142 143 2.362717 TCCCGCATACGTGACATGATTA 59.637 45.455 0.00 0.00 37.70 1.75
143 144 1.138069 TCCCGCATACGTGACATGATT 59.862 47.619 0.00 0.00 37.70 2.57
144 145 0.750249 TCCCGCATACGTGACATGAT 59.250 50.000 0.00 0.00 37.70 2.45
145 146 0.102300 CTCCCGCATACGTGACATGA 59.898 55.000 0.00 0.00 37.70 3.07
146 147 1.490693 GCTCCCGCATACGTGACATG 61.491 60.000 0.00 0.00 37.70 3.21
147 148 1.227263 GCTCCCGCATACGTGACAT 60.227 57.895 0.00 0.00 37.70 3.06
148 149 2.183300 GCTCCCGCATACGTGACA 59.817 61.111 0.00 0.00 37.70 3.58
149 150 2.183300 TGCTCCCGCATACGTGAC 59.817 61.111 0.00 0.00 42.25 3.67
179 180 4.697756 TTGCCTGCTTCCCCGACG 62.698 66.667 0.00 0.00 0.00 5.12
180 181 2.747855 CTTGCCTGCTTCCCCGAC 60.748 66.667 0.00 0.00 0.00 4.79
181 182 3.249189 ACTTGCCTGCTTCCCCGA 61.249 61.111 0.00 0.00 0.00 5.14
182 183 2.747855 GACTTGCCTGCTTCCCCG 60.748 66.667 0.00 0.00 0.00 5.73
183 184 1.377856 GAGACTTGCCTGCTTCCCC 60.378 63.158 0.00 0.00 0.00 4.81
184 185 1.743252 CGAGACTTGCCTGCTTCCC 60.743 63.158 0.00 0.00 0.00 3.97
185 186 1.004440 ACGAGACTTGCCTGCTTCC 60.004 57.895 0.00 0.00 0.00 3.46
186 187 1.016653 GGACGAGACTTGCCTGCTTC 61.017 60.000 0.00 0.00 0.00 3.86
187 188 1.004440 GGACGAGACTTGCCTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
188 189 2.210013 TGGACGAGACTTGCCTGCT 61.210 57.895 0.00 0.00 0.00 4.24
189 190 2.029844 GTGGACGAGACTTGCCTGC 61.030 63.158 0.00 0.00 0.00 4.85
190 191 0.034059 AAGTGGACGAGACTTGCCTG 59.966 55.000 0.00 0.00 32.30 4.85
191 192 0.759346 AAAGTGGACGAGACTTGCCT 59.241 50.000 0.00 0.00 33.85 4.75
192 193 1.531578 GAAAAGTGGACGAGACTTGCC 59.468 52.381 0.00 0.00 33.85 4.52
193 194 2.484889 AGAAAAGTGGACGAGACTTGC 58.515 47.619 0.00 0.00 33.85 4.01
194 195 9.021863 GTATATAAGAAAAGTGGACGAGACTTG 57.978 37.037 0.00 0.00 33.85 3.16
195 196 7.914346 CGTATATAAGAAAAGTGGACGAGACTT 59.086 37.037 0.00 0.00 35.08 3.01
196 197 7.066766 ACGTATATAAGAAAAGTGGACGAGACT 59.933 37.037 2.47 0.00 0.00 3.24
197 198 7.192232 ACGTATATAAGAAAAGTGGACGAGAC 58.808 38.462 2.47 0.00 0.00 3.36
198 199 7.325660 ACGTATATAAGAAAAGTGGACGAGA 57.674 36.000 2.47 0.00 0.00 4.04
199 200 6.636044 GGACGTATATAAGAAAAGTGGACGAG 59.364 42.308 2.47 0.00 0.00 4.18
200 201 6.460123 GGGACGTATATAAGAAAAGTGGACGA 60.460 42.308 2.47 0.00 0.00 4.20
201 202 5.689068 GGGACGTATATAAGAAAAGTGGACG 59.311 44.000 2.47 0.00 0.00 4.79
202 203 6.478016 GTGGGACGTATATAAGAAAAGTGGAC 59.522 42.308 2.47 0.00 0.00 4.02
203 204 6.407299 GGTGGGACGTATATAAGAAAAGTGGA 60.407 42.308 2.47 0.00 0.00 4.02
204 205 5.756833 GGTGGGACGTATATAAGAAAAGTGG 59.243 44.000 2.47 0.00 0.00 4.00
205 206 5.756833 GGGTGGGACGTATATAAGAAAAGTG 59.243 44.000 2.47 0.00 0.00 3.16
206 207 5.664457 AGGGTGGGACGTATATAAGAAAAGT 59.336 40.000 2.47 0.00 0.00 2.66
207 208 6.170846 AGGGTGGGACGTATATAAGAAAAG 57.829 41.667 2.47 0.00 0.00 2.27
208 209 6.564557 AAGGGTGGGACGTATATAAGAAAA 57.435 37.500 2.47 0.00 0.00 2.29
209 210 6.408434 GGAAAGGGTGGGACGTATATAAGAAA 60.408 42.308 2.47 0.00 0.00 2.52
210 211 5.070847 GGAAAGGGTGGGACGTATATAAGAA 59.929 44.000 2.47 0.00 0.00 2.52
211 212 4.590222 GGAAAGGGTGGGACGTATATAAGA 59.410 45.833 2.47 0.00 0.00 2.10
212 213 4.591924 AGGAAAGGGTGGGACGTATATAAG 59.408 45.833 0.00 0.00 0.00 1.73
213 214 4.559726 AGGAAAGGGTGGGACGTATATAA 58.440 43.478 0.00 0.00 0.00 0.98
214 215 4.203342 AGGAAAGGGTGGGACGTATATA 57.797 45.455 0.00 0.00 0.00 0.86
215 216 3.056201 AGGAAAGGGTGGGACGTATAT 57.944 47.619 0.00 0.00 0.00 0.86
216 217 2.555732 AGGAAAGGGTGGGACGTATA 57.444 50.000 0.00 0.00 0.00 1.47
217 218 1.665137 AAGGAAAGGGTGGGACGTAT 58.335 50.000 0.00 0.00 0.00 3.06
218 219 1.437397 AAAGGAAAGGGTGGGACGTA 58.563 50.000 0.00 0.00 0.00 3.57
219 220 0.554305 AAAAGGAAAGGGTGGGACGT 59.446 50.000 0.00 0.00 0.00 4.34
220 221 1.244816 GAAAAGGAAAGGGTGGGACG 58.755 55.000 0.00 0.00 0.00 4.79
221 222 1.147191 AGGAAAAGGAAAGGGTGGGAC 59.853 52.381 0.00 0.00 0.00 4.46
222 223 1.541275 AGGAAAAGGAAAGGGTGGGA 58.459 50.000 0.00 0.00 0.00 4.37
223 224 3.757947 ATAGGAAAAGGAAAGGGTGGG 57.242 47.619 0.00 0.00 0.00 4.61
224 225 5.083821 TCAAATAGGAAAAGGAAAGGGTGG 58.916 41.667 0.00 0.00 0.00 4.61
225 226 6.857437 ATCAAATAGGAAAAGGAAAGGGTG 57.143 37.500 0.00 0.00 0.00 4.61
226 227 7.872061 AAATCAAATAGGAAAAGGAAAGGGT 57.128 32.000 0.00 0.00 0.00 4.34
249 250 5.333566 AAACCTGAGATGGTAGGGAAAAA 57.666 39.130 0.00 0.00 39.83 1.94
250 251 5.333566 AAAACCTGAGATGGTAGGGAAAA 57.666 39.130 0.00 0.00 39.83 2.29
251 252 5.163034 TGAAAAACCTGAGATGGTAGGGAAA 60.163 40.000 0.00 0.00 39.83 3.13
252 253 4.352595 TGAAAAACCTGAGATGGTAGGGAA 59.647 41.667 0.00 0.00 39.83 3.97
253 254 3.913799 TGAAAAACCTGAGATGGTAGGGA 59.086 43.478 0.00 0.00 39.83 4.20
254 255 4.010349 GTGAAAAACCTGAGATGGTAGGG 58.990 47.826 0.00 0.00 39.83 3.53
255 256 4.010349 GGTGAAAAACCTGAGATGGTAGG 58.990 47.826 0.00 0.00 46.55 3.18
268 269 4.528206 AGGGAGAATGAATGGGTGAAAAAC 59.472 41.667 0.00 0.00 0.00 2.43
269 270 4.750941 AGGGAGAATGAATGGGTGAAAAA 58.249 39.130 0.00 0.00 0.00 1.94
270 271 4.402616 AGGGAGAATGAATGGGTGAAAA 57.597 40.909 0.00 0.00 0.00 2.29
271 272 5.528600 TTAGGGAGAATGAATGGGTGAAA 57.471 39.130 0.00 0.00 0.00 2.69
272 273 5.528600 TTTAGGGAGAATGAATGGGTGAA 57.471 39.130 0.00 0.00 0.00 3.18
273 274 5.528600 TTTTAGGGAGAATGAATGGGTGA 57.471 39.130 0.00 0.00 0.00 4.02
274 275 7.290061 TCTATTTTAGGGAGAATGAATGGGTG 58.710 38.462 0.00 0.00 0.00 4.61
275 276 7.465900 TCTATTTTAGGGAGAATGAATGGGT 57.534 36.000 0.00 0.00 0.00 4.51
276 277 8.946797 ATTCTATTTTAGGGAGAATGAATGGG 57.053 34.615 0.00 0.00 38.26 4.00
277 278 9.578576 TGATTCTATTTTAGGGAGAATGAATGG 57.421 33.333 1.27 0.00 39.46 3.16
285 286 9.838339 GAGACAATTGATTCTATTTTAGGGAGA 57.162 33.333 13.59 0.00 0.00 3.71
286 287 9.618890 TGAGACAATTGATTCTATTTTAGGGAG 57.381 33.333 13.59 0.00 0.00 4.30
357 358 8.903820 GCACTTACTTGGTAAGGATTTAATGAT 58.096 33.333 17.91 0.00 46.69 2.45
358 359 8.107095 AGCACTTACTTGGTAAGGATTTAATGA 58.893 33.333 17.91 0.00 46.69 2.57
359 360 8.281212 AGCACTTACTTGGTAAGGATTTAATG 57.719 34.615 17.91 8.93 46.69 1.90
360 361 8.879427 AAGCACTTACTTGGTAAGGATTTAAT 57.121 30.769 17.91 0.00 46.69 1.40
361 362 9.796180 TTAAGCACTTACTTGGTAAGGATTTAA 57.204 29.630 17.91 14.81 46.69 1.52
362 363 9.223099 GTTAAGCACTTACTTGGTAAGGATTTA 57.777 33.333 17.91 11.30 46.69 1.40
363 364 7.722285 TGTTAAGCACTTACTTGGTAAGGATTT 59.278 33.333 17.91 11.99 46.69 2.17
364 365 7.228590 TGTTAAGCACTTACTTGGTAAGGATT 58.771 34.615 17.91 14.11 46.69 3.01
365 366 6.775708 TGTTAAGCACTTACTTGGTAAGGAT 58.224 36.000 17.91 6.62 46.69 3.24
366 367 6.177310 TGTTAAGCACTTACTTGGTAAGGA 57.823 37.500 17.91 0.00 46.69 3.36
367 368 6.870971 TTGTTAAGCACTTACTTGGTAAGG 57.129 37.500 17.91 10.24 46.69 2.69
371 372 9.691362 CATTTTATTGTTAAGCACTTACTTGGT 57.309 29.630 0.00 0.00 0.00 3.67
372 373 9.139174 CCATTTTATTGTTAAGCACTTACTTGG 57.861 33.333 0.00 0.00 0.00 3.61
373 374 8.647226 GCCATTTTATTGTTAAGCACTTACTTG 58.353 33.333 0.00 0.00 0.00 3.16
374 375 8.364142 TGCCATTTTATTGTTAAGCACTTACTT 58.636 29.630 0.00 0.00 0.00 2.24
375 376 7.891561 TGCCATTTTATTGTTAAGCACTTACT 58.108 30.769 0.00 0.00 0.00 2.24
376 377 7.812669 ACTGCCATTTTATTGTTAAGCACTTAC 59.187 33.333 0.00 0.00 0.00 2.34
377 378 7.891561 ACTGCCATTTTATTGTTAAGCACTTA 58.108 30.769 0.00 0.00 0.00 2.24
378 379 6.758254 ACTGCCATTTTATTGTTAAGCACTT 58.242 32.000 0.00 0.00 0.00 3.16
379 380 6.345096 ACTGCCATTTTATTGTTAAGCACT 57.655 33.333 0.00 0.00 0.00 4.40
380 381 8.527567 TTAACTGCCATTTTATTGTTAAGCAC 57.472 30.769 0.00 0.00 0.00 4.40
381 382 9.547753 TTTTAACTGCCATTTTATTGTTAAGCA 57.452 25.926 0.00 0.00 33.42 3.91
394 395 9.567848 CAGTCGTTATAATTTTTAACTGCCATT 57.432 29.630 7.75 0.00 0.00 3.16
406 407 9.783256 GGTTTTTCTATGCAGTCGTTATAATTT 57.217 29.630 0.00 0.00 0.00 1.82
407 408 9.174166 AGGTTTTTCTATGCAGTCGTTATAATT 57.826 29.630 0.00 0.00 0.00 1.40
408 409 8.612619 CAGGTTTTTCTATGCAGTCGTTATAAT 58.387 33.333 0.00 0.00 0.00 1.28
409 410 7.413657 GCAGGTTTTTCTATGCAGTCGTTATAA 60.414 37.037 0.00 0.00 38.54 0.98
410 411 6.036735 GCAGGTTTTTCTATGCAGTCGTTATA 59.963 38.462 0.00 0.00 38.54 0.98
411 412 5.163754 GCAGGTTTTTCTATGCAGTCGTTAT 60.164 40.000 0.00 0.00 38.54 1.89
412 413 4.153475 GCAGGTTTTTCTATGCAGTCGTTA 59.847 41.667 0.00 0.00 38.54 3.18
413 414 3.058224 GCAGGTTTTTCTATGCAGTCGTT 60.058 43.478 0.00 0.00 38.54 3.85
414 415 2.484264 GCAGGTTTTTCTATGCAGTCGT 59.516 45.455 0.00 0.00 38.54 4.34
415 416 2.744202 AGCAGGTTTTTCTATGCAGTCG 59.256 45.455 0.00 0.00 41.14 4.18
416 417 5.643777 TCTTAGCAGGTTTTTCTATGCAGTC 59.356 40.000 0.00 0.00 41.14 3.51
417 418 5.560724 TCTTAGCAGGTTTTTCTATGCAGT 58.439 37.500 0.00 0.00 41.14 4.40
418 419 6.690194 ATCTTAGCAGGTTTTTCTATGCAG 57.310 37.500 0.00 0.00 41.14 4.41
419 420 7.466746 AAATCTTAGCAGGTTTTTCTATGCA 57.533 32.000 0.00 0.00 41.14 3.96
420 421 9.508567 CTAAAATCTTAGCAGGTTTTTCTATGC 57.491 33.333 0.84 0.00 39.91 3.14
459 460 9.811995 GCCCGTGAATGTACATCTATTATTATA 57.188 33.333 9.23 0.00 0.00 0.98
460 461 8.540388 AGCCCGTGAATGTACATCTATTATTAT 58.460 33.333 9.23 0.00 0.00 1.28
461 462 7.903145 AGCCCGTGAATGTACATCTATTATTA 58.097 34.615 9.23 0.00 0.00 0.98
462 463 6.769512 AGCCCGTGAATGTACATCTATTATT 58.230 36.000 9.23 0.00 0.00 1.40
463 464 6.360370 AGCCCGTGAATGTACATCTATTAT 57.640 37.500 9.23 0.00 0.00 1.28
464 465 5.801531 AGCCCGTGAATGTACATCTATTA 57.198 39.130 9.23 0.00 0.00 0.98
465 466 4.689612 AGCCCGTGAATGTACATCTATT 57.310 40.909 9.23 0.00 0.00 1.73
466 467 5.801531 TTAGCCCGTGAATGTACATCTAT 57.198 39.130 9.23 0.00 0.00 1.98
467 468 5.538813 AGATTAGCCCGTGAATGTACATCTA 59.461 40.000 9.23 1.57 0.00 1.98
468 469 4.345257 AGATTAGCCCGTGAATGTACATCT 59.655 41.667 9.23 2.57 0.00 2.90
469 470 4.632153 AGATTAGCCCGTGAATGTACATC 58.368 43.478 9.23 3.74 0.00 3.06
470 471 4.689612 AGATTAGCCCGTGAATGTACAT 57.310 40.909 1.41 1.41 0.00 2.29
471 472 4.647853 AGTAGATTAGCCCGTGAATGTACA 59.352 41.667 0.00 0.00 35.37 2.90
472 473 5.197682 AGTAGATTAGCCCGTGAATGTAC 57.802 43.478 0.00 0.00 33.92 2.90
473 474 6.206243 GTCTAGTAGATTAGCCCGTGAATGTA 59.794 42.308 2.51 0.00 0.00 2.29
474 475 5.009811 GTCTAGTAGATTAGCCCGTGAATGT 59.990 44.000 2.51 0.00 0.00 2.71
475 476 5.241949 AGTCTAGTAGATTAGCCCGTGAATG 59.758 44.000 2.51 0.00 0.00 2.67
476 477 5.386924 AGTCTAGTAGATTAGCCCGTGAAT 58.613 41.667 2.51 0.00 0.00 2.57
477 478 4.789807 AGTCTAGTAGATTAGCCCGTGAA 58.210 43.478 2.51 0.00 0.00 3.18
478 479 4.434545 AGTCTAGTAGATTAGCCCGTGA 57.565 45.455 2.51 0.00 0.00 4.35
479 480 6.821031 AATAGTCTAGTAGATTAGCCCGTG 57.179 41.667 2.51 0.00 0.00 4.94
480 481 9.531158 AATAAATAGTCTAGTAGATTAGCCCGT 57.469 33.333 2.51 0.00 0.00 5.28
492 493 9.826574 TTGCAACGGAATAATAAATAGTCTAGT 57.173 29.630 0.00 0.00 0.00 2.57
495 496 8.076178 GCATTGCAACGGAATAATAAATAGTCT 58.924 33.333 0.00 0.00 0.00 3.24
496 497 7.860373 TGCATTGCAACGGAATAATAAATAGTC 59.140 33.333 9.33 0.00 34.76 2.59
497 498 7.711846 TGCATTGCAACGGAATAATAAATAGT 58.288 30.769 9.33 0.00 34.76 2.12
498 499 8.746922 ATGCATTGCAACGGAATAATAAATAG 57.253 30.769 16.46 0.00 43.62 1.73
499 500 9.838975 CTATGCATTGCAACGGAATAATAAATA 57.161 29.630 16.46 0.00 43.62 1.40
500 501 8.575589 TCTATGCATTGCAACGGAATAATAAAT 58.424 29.630 16.46 0.00 43.62 1.40
501 502 7.860373 GTCTATGCATTGCAACGGAATAATAAA 59.140 33.333 16.46 0.00 43.62 1.40
502 503 7.012799 TGTCTATGCATTGCAACGGAATAATAA 59.987 33.333 16.46 0.00 43.62 1.40
503 504 6.484977 TGTCTATGCATTGCAACGGAATAATA 59.515 34.615 16.46 0.00 43.62 0.98
504 505 5.299028 TGTCTATGCATTGCAACGGAATAAT 59.701 36.000 16.46 0.00 43.62 1.28
505 506 4.637977 TGTCTATGCATTGCAACGGAATAA 59.362 37.500 16.46 1.85 43.62 1.40
506 507 4.195416 TGTCTATGCATTGCAACGGAATA 58.805 39.130 16.46 0.59 43.62 1.75
507 508 3.016031 TGTCTATGCATTGCAACGGAAT 58.984 40.909 16.46 0.00 43.62 3.01
508 509 2.431454 TGTCTATGCATTGCAACGGAA 58.569 42.857 16.46 0.00 43.62 4.30
509 510 2.106477 TGTCTATGCATTGCAACGGA 57.894 45.000 16.46 10.89 43.62 4.69
510 511 2.917701 TTGTCTATGCATTGCAACGG 57.082 45.000 16.46 8.75 43.62 4.44
511 512 4.168014 ACAATTGTCTATGCATTGCAACG 58.832 39.130 16.46 9.62 43.62 4.10
512 513 5.691508 GACAATTGTCTATGCATTGCAAC 57.308 39.130 27.66 10.11 41.05 4.17
555 556 0.600057 GGACGACAGAACCCTACGTT 59.400 55.000 0.00 0.00 35.77 3.99
556 557 0.538057 TGGACGACAGAACCCTACGT 60.538 55.000 0.00 0.00 37.33 3.57
557 558 0.815734 ATGGACGACAGAACCCTACG 59.184 55.000 0.00 0.00 0.00 3.51
558 559 2.099427 GAGATGGACGACAGAACCCTAC 59.901 54.545 0.00 0.00 0.00 3.18
559 560 2.376109 GAGATGGACGACAGAACCCTA 58.624 52.381 0.00 0.00 0.00 3.53
560 561 1.187087 GAGATGGACGACAGAACCCT 58.813 55.000 0.00 0.00 0.00 4.34
561 562 0.179134 CGAGATGGACGACAGAACCC 60.179 60.000 0.00 0.00 0.00 4.11
562 563 0.526662 ACGAGATGGACGACAGAACC 59.473 55.000 0.00 0.00 34.70 3.62
563 564 2.095161 AGAACGAGATGGACGACAGAAC 60.095 50.000 0.00 0.00 34.70 3.01
564 565 2.160205 AGAACGAGATGGACGACAGAA 58.840 47.619 0.00 0.00 34.70 3.02
565 566 1.822506 AGAACGAGATGGACGACAGA 58.177 50.000 0.00 0.00 34.70 3.41
566 567 2.095212 TGAAGAACGAGATGGACGACAG 60.095 50.000 0.00 0.00 34.70 3.51
567 568 1.883926 TGAAGAACGAGATGGACGACA 59.116 47.619 0.00 0.00 34.70 4.35
568 569 2.631418 TGAAGAACGAGATGGACGAC 57.369 50.000 0.00 0.00 34.70 4.34
569 570 3.017442 AGATGAAGAACGAGATGGACGA 58.983 45.455 0.00 0.00 34.70 4.20
570 571 3.428746 AGATGAAGAACGAGATGGACG 57.571 47.619 0.00 0.00 0.00 4.79
571 572 5.651530 TGTTAGATGAAGAACGAGATGGAC 58.348 41.667 0.00 0.00 0.00 4.02
572 573 5.914898 TGTTAGATGAAGAACGAGATGGA 57.085 39.130 0.00 0.00 0.00 3.41
573 574 7.545362 AAATGTTAGATGAAGAACGAGATGG 57.455 36.000 0.00 0.00 0.00 3.51
574 575 8.119226 GGAAAATGTTAGATGAAGAACGAGATG 58.881 37.037 0.00 0.00 0.00 2.90
575 576 7.824289 TGGAAAATGTTAGATGAAGAACGAGAT 59.176 33.333 0.00 0.00 0.00 2.75
576 577 7.158697 TGGAAAATGTTAGATGAAGAACGAGA 58.841 34.615 0.00 0.00 0.00 4.04
577 578 7.364522 TGGAAAATGTTAGATGAAGAACGAG 57.635 36.000 0.00 0.00 0.00 4.18
578 579 7.921786 ATGGAAAATGTTAGATGAAGAACGA 57.078 32.000 0.00 0.00 0.00 3.85
579 580 8.454106 AGAATGGAAAATGTTAGATGAAGAACG 58.546 33.333 0.00 0.00 0.00 3.95
580 581 9.780413 GAGAATGGAAAATGTTAGATGAAGAAC 57.220 33.333 0.00 0.00 0.00 3.01
698 700 7.434013 CGTGATTAAGCTACCAAAACAAAACTT 59.566 33.333 0.00 0.00 0.00 2.66
700 702 6.143278 CCGTGATTAAGCTACCAAAACAAAAC 59.857 38.462 0.00 0.00 0.00 2.43
701 703 6.210078 CCGTGATTAAGCTACCAAAACAAAA 58.790 36.000 0.00 0.00 0.00 2.44
779 788 8.682710 GGTTGCAACAGAGGTAAATATTTCATA 58.317 33.333 29.55 0.00 0.00 2.15
811 1107 7.718314 GGGATCCCGAAACTTTATATTTACTGT 59.282 37.037 17.02 0.00 0.00 3.55
916 1215 4.452733 CGCCCCCGAACCTCAGTC 62.453 72.222 0.00 0.00 36.29 3.51
970 1269 2.817396 GGCGCCTCTCTTGTCTGC 60.817 66.667 22.15 0.00 0.00 4.26
1085 1384 2.035237 AACTCACAACGGGCGAGGAA 62.035 55.000 0.00 0.00 0.00 3.36
1100 1399 4.957164 GGTTCCATCCCCGAACTC 57.043 61.111 0.00 0.00 39.65 3.01
1211 1510 6.741992 TCCATCTGTAGCACAAAATAGTTG 57.258 37.500 0.00 0.00 0.00 3.16
1224 1523 0.678395 AGCAGCCGATCCATCTGTAG 59.322 55.000 0.00 0.00 0.00 2.74
1264 1570 1.361668 CTTGTTGGCAGACCGATCCG 61.362 60.000 0.00 0.00 39.70 4.18
1305 1611 1.074566 GCCCTGAATATTCCCCTCCTG 59.925 57.143 12.90 0.00 0.00 3.86
1360 1666 0.482446 TGCAGTGGGGGTCTTTCATT 59.518 50.000 0.00 0.00 0.00 2.57
1371 1677 1.475280 CAATCCAATCTGTGCAGTGGG 59.525 52.381 8.40 5.14 0.00 4.61
1373 1679 2.094906 CACCAATCCAATCTGTGCAGTG 60.095 50.000 0.00 0.00 0.00 3.66
1385 1691 3.561960 GCCAGCATATATCCACCAATCCA 60.562 47.826 0.00 0.00 0.00 3.41
1386 1692 3.019564 GCCAGCATATATCCACCAATCC 58.980 50.000 0.00 0.00 0.00 3.01
1394 1700 8.705594 TCTTATTTAGGTAGCCAGCATATATCC 58.294 37.037 0.00 0.00 0.00 2.59
1445 1759 6.974932 ACAGAAGACAAGCAGTAATGTATG 57.025 37.500 0.00 0.00 0.00 2.39
1446 1760 6.595716 GGAACAGAAGACAAGCAGTAATGTAT 59.404 38.462 0.00 0.00 0.00 2.29
1462 1780 7.164230 ACAGAGATAGTAGTTGGAACAGAAG 57.836 40.000 0.00 0.00 42.39 2.85
1502 1820 2.582436 GGGTCGATTTCTGCCGGA 59.418 61.111 5.05 0.00 0.00 5.14
1511 1829 3.992943 TGTGATAACAAGGGGTCGATT 57.007 42.857 0.00 0.00 0.00 3.34
1542 1860 2.716398 GACAAACGCCTGTCTCAAAAC 58.284 47.619 9.60 0.00 42.11 2.43
1564 1882 0.683412 AGAAGGTGACCCACGGTAAC 59.317 55.000 0.00 0.00 36.34 2.50
1616 1944 6.926272 GCCGACTTGTGAAGAGATATAAGAAT 59.074 38.462 0.00 0.00 0.00 2.40
1619 1947 4.985409 GGCCGACTTGTGAAGAGATATAAG 59.015 45.833 0.00 0.00 0.00 1.73
1623 1951 1.480954 GGGCCGACTTGTGAAGAGATA 59.519 52.381 0.00 0.00 0.00 1.98
1633 1961 1.690219 ATAGCTCAGGGGCCGACTTG 61.690 60.000 0.00 0.00 0.00 3.16
1639 1967 4.327680 CTTGTAATTATAGCTCAGGGGCC 58.672 47.826 0.00 0.00 0.00 5.80
1653 1981 9.853177 CCAATCTAGAAATCTACCCTTGTAATT 57.147 33.333 0.00 0.00 0.00 1.40
1655 1983 8.388656 ACCAATCTAGAAATCTACCCTTGTAA 57.611 34.615 0.00 0.00 0.00 2.41
1658 1986 6.889198 TGACCAATCTAGAAATCTACCCTTG 58.111 40.000 0.00 0.00 0.00 3.61
1680 2008 5.189539 TGATGGATGTTGTAAGGTCTGATGA 59.810 40.000 0.00 0.00 0.00 2.92
1699 2027 8.306038 TGTCCTGATAAAAATGAAACTTGATGG 58.694 33.333 0.00 0.00 0.00 3.51
1722 2050 7.048512 AGGCAAATTAGGTCATAGTTACTGTC 58.951 38.462 0.00 0.00 0.00 3.51
1763 2091 8.469200 GGGAATCATGATGTCAAGTTTATCAAA 58.531 33.333 9.46 0.00 34.80 2.69
1768 2096 6.603201 GGAAGGGAATCATGATGTCAAGTTTA 59.397 38.462 9.46 0.00 0.00 2.01
1769 2097 5.420104 GGAAGGGAATCATGATGTCAAGTTT 59.580 40.000 9.46 0.00 0.00 2.66
1807 2141 6.657541 GGGAGGTATTGTGATTTTAGACAACA 59.342 38.462 0.00 0.00 34.98 3.33
1808 2142 6.884836 AGGGAGGTATTGTGATTTTAGACAAC 59.115 38.462 0.00 0.00 34.98 3.32
1843 2177 3.609853 TGTAGCCAAATGGATCACAGTC 58.390 45.455 2.98 0.00 37.39 3.51
1844 2178 3.614092 CTGTAGCCAAATGGATCACAGT 58.386 45.455 2.98 0.00 34.06 3.55
1845 2179 2.357009 GCTGTAGCCAAATGGATCACAG 59.643 50.000 17.37 17.37 37.79 3.66
1876 2210 9.374711 TCCAATACACATAGAAGGATATGTACA 57.625 33.333 0.00 0.00 43.01 2.90
1883 2217 9.479549 ACAAATTTCCAATACACATAGAAGGAT 57.520 29.630 0.00 0.00 0.00 3.24
1884 2218 8.877864 ACAAATTTCCAATACACATAGAAGGA 57.122 30.769 0.00 0.00 0.00 3.36
1918 2411 9.743057 GTGACAGTCCTATGATATATCTATTGC 57.257 37.037 13.79 1.10 0.00 3.56
1933 2430 8.777578 ACTATATAAATGTGGTGACAGTCCTA 57.222 34.615 0.00 0.00 44.46 2.94
1968 2465 9.868277 TTGAAACATTAGAACACACTCAAAAAT 57.132 25.926 0.00 0.00 0.00 1.82
1971 2468 9.515020 GAATTGAAACATTAGAACACACTCAAA 57.485 29.630 0.00 0.00 0.00 2.69
1972 2469 8.902806 AGAATTGAAACATTAGAACACACTCAA 58.097 29.630 0.00 0.00 0.00 3.02
1973 2470 8.450578 AGAATTGAAACATTAGAACACACTCA 57.549 30.769 0.00 0.00 0.00 3.41
1974 2471 9.387123 GAAGAATTGAAACATTAGAACACACTC 57.613 33.333 0.00 0.00 0.00 3.51
1975 2472 9.125026 AGAAGAATTGAAACATTAGAACACACT 57.875 29.630 0.00 0.00 0.00 3.55
1976 2473 9.387123 GAGAAGAATTGAAACATTAGAACACAC 57.613 33.333 0.00 0.00 0.00 3.82
1978 2475 8.023706 GGGAGAAGAATTGAAACATTAGAACAC 58.976 37.037 0.00 0.00 0.00 3.32
1979 2476 7.723616 TGGGAGAAGAATTGAAACATTAGAACA 59.276 33.333 0.00 0.00 0.00 3.18
2045 3335 1.409064 AGCATCTCGGAGCGTCATTAA 59.591 47.619 0.00 0.00 35.48 1.40
2090 3380 0.035458 CTCCAGGAACGCAGAAAGGT 59.965 55.000 0.00 0.00 0.00 3.50
2098 3388 2.268920 TGGCATCTCCAGGAACGC 59.731 61.111 0.00 0.00 40.72 4.84
2129 3422 8.781196 CAACTGGAATAGTATTCCATGATCAAG 58.219 37.037 34.48 25.33 46.47 3.02
2385 3697 1.134699 GGTGAAGATGCTGGATCGTGA 60.135 52.381 1.94 0.00 36.04 4.35
2428 3740 3.313249 TCATGCAAACAAGACTGACTGTG 59.687 43.478 0.00 0.00 0.00 3.66
2576 3888 2.468831 CTGCAGCTCGAAAGGTATCTC 58.531 52.381 0.00 0.00 0.00 2.75
2740 4056 1.001048 CGGAGGACGTTGTTACACAGA 60.001 52.381 0.00 0.00 37.93 3.41
2768 4084 3.743521 CACTGGATGGAAACTCTTCACA 58.256 45.455 0.00 0.00 32.75 3.58
2869 4232 9.088512 GTACCACTTTGTCTATGAAGTATGAAG 57.911 37.037 0.00 0.00 34.52 3.02
2915 4279 1.802636 CCTGCATAAAGGTGGCACG 59.197 57.895 12.17 0.00 33.34 5.34
2957 4321 1.192146 TGGAGGAACTTGCTAGGCGT 61.192 55.000 0.00 0.00 41.55 5.68
3061 4433 4.691685 TGACTTACACACAGTTTGAACGTT 59.308 37.500 0.00 0.00 0.00 3.99
3138 4515 8.331022 CAATTAATCGTTCAACCATAGAGACTG 58.669 37.037 0.00 0.00 0.00 3.51
3441 4824 1.985895 CTTCCCAGGGTCTAACCAAGT 59.014 52.381 5.01 0.00 41.02 3.16
3641 5025 7.010183 GCATTAGTAACGCTCTCAAGATGTTTA 59.990 37.037 0.00 0.00 0.00 2.01
3643 5027 5.292101 GCATTAGTAACGCTCTCAAGATGTT 59.708 40.000 0.00 4.04 0.00 2.71
3719 5103 0.706433 ATGCCACTCCCTCACCATTT 59.294 50.000 0.00 0.00 0.00 2.32
3747 5131 2.998949 GGGCCGGAGTGGAAAGAT 59.001 61.111 5.05 0.00 42.00 2.40
3798 5187 0.923403 TCAAGCATCTCGAAATCGCG 59.077 50.000 0.00 0.00 39.60 5.87
3799 5188 2.286294 ACATCAAGCATCTCGAAATCGC 59.714 45.455 0.00 0.00 39.60 4.58
3801 5190 5.973651 TGTACATCAAGCATCTCGAAATC 57.026 39.130 0.00 0.00 0.00 2.17
3815 5204 4.214545 CCGCCACTTTTTACTTGTACATCA 59.785 41.667 0.00 0.00 0.00 3.07
3856 5245 5.182570 TCTCAAGATGAAACAATGAGCAAGG 59.817 40.000 0.00 0.00 37.89 3.61
3888 5277 1.762522 ATCCACATCAGGCCGCTAGG 61.763 60.000 0.00 0.00 41.62 3.02
3892 5281 0.106708 TTAGATCCACATCAGGCCGC 59.893 55.000 0.00 0.00 0.00 6.53
3893 5282 2.847327 ATTAGATCCACATCAGGCCG 57.153 50.000 0.00 0.00 0.00 6.13
3895 5284 4.582869 TGCATATTAGATCCACATCAGGC 58.417 43.478 0.00 0.00 0.00 4.85
3896 5285 6.651086 AGATGCATATTAGATCCACATCAGG 58.349 40.000 0.00 0.00 35.91 3.86
3897 5286 9.833917 ATTAGATGCATATTAGATCCACATCAG 57.166 33.333 0.00 0.00 35.91 2.90
3932 5323 0.037697 TGCCGTGTGTCTATGTGTCC 60.038 55.000 0.00 0.00 0.00 4.02
4048 5443 9.419297 GTATATTCAACCGTCTTTGCATCTATA 57.581 33.333 0.00 0.00 0.00 1.31
4063 5458 3.751698 GGGGATTGCTCGTATATTCAACC 59.248 47.826 0.00 0.00 0.00 3.77
4190 5589 4.481368 AGTATGTCGCAATAAGAACCCA 57.519 40.909 0.00 0.00 0.00 4.51
4199 5598 3.005897 CCTGCCTAGTAGTATGTCGCAAT 59.994 47.826 0.00 0.00 0.00 3.56
4203 5602 1.954382 TGCCTGCCTAGTAGTATGTCG 59.046 52.381 0.00 0.00 0.00 4.35
4205 5604 5.368989 GAAAATGCCTGCCTAGTAGTATGT 58.631 41.667 0.00 0.00 0.00 2.29
4211 5610 1.834896 TCCGAAAATGCCTGCCTAGTA 59.165 47.619 0.00 0.00 0.00 1.82
4213 5612 1.303309 CTCCGAAAATGCCTGCCTAG 58.697 55.000 0.00 0.00 0.00 3.02
4241 5648 1.271656 CGAACAGGGTCGAAACCTACT 59.728 52.381 9.40 0.74 45.66 2.57
4251 5658 3.516615 CAGAGAGAATTCGAACAGGGTC 58.483 50.000 0.00 0.00 0.00 4.46
4252 5659 2.354203 GCAGAGAGAATTCGAACAGGGT 60.354 50.000 0.00 0.00 0.00 4.34
4254 5661 3.186119 GAGCAGAGAGAATTCGAACAGG 58.814 50.000 0.00 0.00 0.00 4.00
4255 5662 3.186119 GGAGCAGAGAGAATTCGAACAG 58.814 50.000 0.00 0.00 0.00 3.16
4256 5663 2.562738 TGGAGCAGAGAGAATTCGAACA 59.437 45.455 0.00 0.00 0.00 3.18
4257 5664 2.926838 GTGGAGCAGAGAGAATTCGAAC 59.073 50.000 0.00 0.00 0.00 3.95
4258 5665 2.562738 TGTGGAGCAGAGAGAATTCGAA 59.437 45.455 0.00 0.00 0.00 3.71
4259 5666 2.171003 TGTGGAGCAGAGAGAATTCGA 58.829 47.619 0.00 0.00 0.00 3.71
4260 5667 2.662006 TGTGGAGCAGAGAGAATTCG 57.338 50.000 0.00 0.00 0.00 3.34
4261 5668 4.438472 GCATTTGTGGAGCAGAGAGAATTC 60.438 45.833 0.00 0.00 0.00 2.17
4262 5669 3.442977 GCATTTGTGGAGCAGAGAGAATT 59.557 43.478 0.00 0.00 0.00 2.17
4263 5670 3.015327 GCATTTGTGGAGCAGAGAGAAT 58.985 45.455 0.00 0.00 0.00 2.40
4264 5671 2.224597 TGCATTTGTGGAGCAGAGAGAA 60.225 45.455 0.00 0.00 33.75 2.87
4273 5680 0.169672 CGGAAGCTGCATTTGTGGAG 59.830 55.000 1.02 0.00 0.00 3.86
4275 5682 0.597568 TTCGGAAGCTGCATTTGTGG 59.402 50.000 1.02 0.00 0.00 4.17
4276 5683 1.973138 CTTCGGAAGCTGCATTTGTG 58.027 50.000 4.57 0.00 0.00 3.33
4292 5699 3.724914 CTTCCGCTCCCTCCGCTTC 62.725 68.421 0.00 0.00 0.00 3.86
4296 5703 4.821589 GTGCTTCCGCTCCCTCCG 62.822 72.222 0.00 0.00 36.97 4.63
4298 5705 1.078143 ATTGTGCTTCCGCTCCCTC 60.078 57.895 0.00 0.00 36.97 4.30
4300 5707 1.377202 TCATTGTGCTTCCGCTCCC 60.377 57.895 0.00 0.00 36.97 4.30
4302 5709 0.445436 CTGTCATTGTGCTTCCGCTC 59.555 55.000 0.00 0.00 36.97 5.03
4303 5710 0.957395 CCTGTCATTGTGCTTCCGCT 60.957 55.000 0.00 0.00 36.97 5.52
4304 5711 0.955428 TCCTGTCATTGTGCTTCCGC 60.955 55.000 0.00 0.00 0.00 5.54
4305 5712 1.081892 CTCCTGTCATTGTGCTTCCG 58.918 55.000 0.00 0.00 0.00 4.30
4306 5713 1.808945 CACTCCTGTCATTGTGCTTCC 59.191 52.381 0.00 0.00 0.00 3.46
4307 5714 1.808945 CCACTCCTGTCATTGTGCTTC 59.191 52.381 0.00 0.00 0.00 3.86
4310 5717 0.607489 AGCCACTCCTGTCATTGTGC 60.607 55.000 0.00 0.00 0.00 4.57
4311 5718 1.446907 GAGCCACTCCTGTCATTGTG 58.553 55.000 0.00 0.00 0.00 3.33
4312 5719 0.326264 GGAGCCACTCCTGTCATTGT 59.674 55.000 6.38 0.00 46.41 2.71
4313 5720 3.165606 GGAGCCACTCCTGTCATTG 57.834 57.895 6.38 0.00 46.41 2.82
4322 5729 1.068250 GCGGTAGATGGAGCCACTC 59.932 63.158 0.00 0.00 0.00 3.51
4323 5730 2.786495 CGCGGTAGATGGAGCCACT 61.786 63.158 0.00 0.00 0.00 4.00
4324 5731 2.279517 CGCGGTAGATGGAGCCAC 60.280 66.667 0.00 0.00 0.00 5.01
4325 5732 3.536917 CCGCGGTAGATGGAGCCA 61.537 66.667 19.50 0.00 0.00 4.75
4326 5733 3.214250 CTCCGCGGTAGATGGAGCC 62.214 68.421 27.15 0.00 42.53 4.70
4327 5734 2.336809 CTCCGCGGTAGATGGAGC 59.663 66.667 27.15 0.00 42.53 4.70
4330 5737 2.279517 GCACTCCGCGGTAGATGG 60.280 66.667 27.15 15.55 0.00 3.51
4413 5821 2.475111 CAGTTTCGCTTTAACGCAGAGA 59.525 45.455 4.70 0.00 0.00 3.10
4473 5881 2.339418 CTCTCTGTCTGCAGCTGAAAG 58.661 52.381 20.43 14.20 42.29 2.62
4481 5889 0.537371 TCGACACCTCTCTGTCTGCA 60.537 55.000 0.00 0.00 38.79 4.41
4557 5965 1.155424 GGATTTTCGCGACGGGCATA 61.155 55.000 9.15 0.00 43.84 3.14
4569 5977 6.146510 GGTTAAATTTTCGGGTGTGGATTTTC 59.853 38.462 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.