Multiple sequence alignment - TraesCS5A01G292900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G292900 chr5A 100.000 3531 0 0 1 3531 502788985 502785455 0.000000e+00 6521
1 TraesCS5A01G292900 chr5D 90.599 2319 118 44 10 2316 397427393 397425163 0.000000e+00 2983
2 TraesCS5A01G292900 chr5D 95.592 431 12 4 2702 3125 397424670 397424240 0.000000e+00 684
3 TraesCS5A01G292900 chr5D 94.444 342 15 4 2322 2660 397425109 397424769 1.120000e-144 523
4 TraesCS5A01G292900 chr5D 87.500 152 12 3 3381 3531 397424243 397424098 6.060000e-38 169
5 TraesCS5A01G292900 chr5B 90.944 1833 91 30 855 2660 477611750 477609966 0.000000e+00 2396
6 TraesCS5A01G292900 chr5B 90.107 748 46 16 69 793 477612999 477612257 0.000000e+00 946
7 TraesCS5A01G292900 chr5B 94.676 432 15 4 2698 3126 477609876 477609450 0.000000e+00 664
8 TraesCS5A01G292900 chr6A 96.591 264 9 0 3122 3385 511118743 511119006 4.180000e-119 438
9 TraesCS5A01G292900 chr6A 96.591 264 9 0 3122 3385 511149644 511149907 4.180000e-119 438
10 TraesCS5A01G292900 chr6A 93.885 278 17 0 3109 3386 97632097 97632374 1.520000e-113 420
11 TraesCS5A01G292900 chr1A 96.591 264 9 0 3122 3385 358543293 358543556 4.180000e-119 438
12 TraesCS5A01G292900 chr1A 95.833 264 11 0 3122 3385 144154368 144154105 9.060000e-116 427
13 TraesCS5A01G292900 chr7A 96.212 264 10 0 3122 3385 463707867 463707604 1.950000e-117 433
14 TraesCS5A01G292900 chr7A 76.512 281 39 19 1584 1852 261880431 261880166 1.030000e-25 128
15 TraesCS5A01G292900 chr7A 93.827 81 5 0 1404 1484 261880581 261880501 4.790000e-24 122
16 TraesCS5A01G292900 chr3A 96.212 264 10 0 3122 3385 58274814 58275077 1.950000e-117 433
17 TraesCS5A01G292900 chr3A 95.849 265 11 0 3121 3385 225920091 225919827 2.520000e-116 429
18 TraesCS5A01G292900 chrUn 95.833 264 11 0 3122 3385 1525431 1525694 9.060000e-116 427
19 TraesCS5A01G292900 chr7D 77.143 280 39 22 1584 1852 245484799 245484534 4.750000e-29 139
20 TraesCS5A01G292900 chr7D 93.827 81 5 0 1404 1484 245484947 245484867 4.790000e-24 122
21 TraesCS5A01G292900 chr7B 77.289 273 39 18 1584 1846 221914528 221914269 4.750000e-29 139
22 TraesCS5A01G292900 chr7B 92.593 81 6 0 1404 1484 221914678 221914598 2.230000e-22 117
23 TraesCS5A01G292900 chr7B 85.567 97 11 2 1939 2035 221914131 221914038 8.070000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G292900 chr5A 502785455 502788985 3530 True 6521.000000 6521 100.00000 1 3531 1 chr5A.!!$R1 3530
1 TraesCS5A01G292900 chr5D 397424098 397427393 3295 True 1089.750000 2983 92.03375 10 3531 4 chr5D.!!$R1 3521
2 TraesCS5A01G292900 chr5B 477609450 477612999 3549 True 1335.333333 2396 91.90900 69 3126 3 chr5B.!!$R1 3057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 100 1.141591 GAATTCTGCAAATGCGGGCG 61.142 55.000 13.90 0.00 46.99 6.13 F
808 839 1.273495 TGCATCTCTCTCCCACTTCCT 60.273 52.381 0.00 0.00 0.00 3.36 F
2186 2678 0.107752 TCCATGACGCAGCTGCATTA 60.108 50.000 36.03 21.21 42.21 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1668 0.977395 AGTTGAGGCTGGTAGTGTCC 59.023 55.0 0.00 0.00 0.00 4.02 R
2230 2722 0.184451 GGTGTCCATCATGGCCTGAT 59.816 55.0 3.32 8.11 45.78 2.90 R
3364 3969 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.0 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.969536 ACATGTCCTTAATCCTATTTCATCG 57.030 36.000 0.00 0.00 0.00 3.84
34 35 7.096023 CCTTAATCCTATTTCATCGAGACAACG 60.096 40.741 0.00 0.00 0.00 4.10
35 36 4.041740 TCCTATTTCATCGAGACAACGG 57.958 45.455 0.00 0.00 0.00 4.44
44 45 3.316573 GAGACAACGGCCCCTCCTG 62.317 68.421 0.00 0.00 0.00 3.86
45 46 3.319198 GACAACGGCCCCTCCTGA 61.319 66.667 0.00 0.00 0.00 3.86
47 48 2.190578 CAACGGCCCCTCCTGATC 59.809 66.667 0.00 0.00 0.00 2.92
49 50 1.923395 AACGGCCCCTCCTGATCAA 60.923 57.895 0.00 0.00 0.00 2.57
52 59 1.452108 GGCCCCTCCTGATCAAACG 60.452 63.158 0.00 0.00 0.00 3.60
67 74 3.827722 TCAAACGATTCCCAGGAAAGTT 58.172 40.909 14.23 14.23 39.14 2.66
71 78 4.473477 ACGATTCCCAGGAAAGTTCTAG 57.527 45.455 2.65 0.00 37.69 2.43
75 82 2.902608 TCCCAGGAAAGTTCTAGCTGA 58.097 47.619 0.00 0.00 0.00 4.26
83 90 4.697352 GGAAAGTTCTAGCTGAATTCTGCA 59.303 41.667 31.15 19.24 42.33 4.41
91 98 1.917273 CTGAATTCTGCAAATGCGGG 58.083 50.000 13.90 3.43 46.99 6.13
93 100 1.141591 GAATTCTGCAAATGCGGGCG 61.142 55.000 13.90 0.00 46.99 6.13
320 330 5.278266 GCACAGTGCACAGGTTATCTTTTAA 60.278 40.000 21.22 0.00 44.26 1.52
323 333 6.942576 ACAGTGCACAGGTTATCTTTTAAGAT 59.057 34.615 21.04 9.70 46.85 2.40
401 411 3.244353 TGCTTTTCTCTGAGACAAGAGGG 60.244 47.826 28.67 10.66 43.36 4.30
404 414 5.470047 TTTTCTCTGAGACAAGAGGGTAC 57.530 43.478 6.92 0.00 43.36 3.34
405 415 4.390129 TTCTCTGAGACAAGAGGGTACT 57.610 45.455 6.92 0.00 43.36 2.73
409 419 5.725338 TCTCTGAGACAAGAGGGTACTAGTA 59.275 44.000 2.58 0.00 43.36 1.82
410 420 5.743117 TCTGAGACAAGAGGGTACTAGTAC 58.257 45.833 22.53 22.53 35.40 2.73
435 445 3.193267 TCAATTGACCAAGCTAATGCACC 59.807 43.478 3.38 0.00 42.74 5.01
484 494 8.808092 ACTCCCTGTATAAAGACATATAAGAGC 58.192 37.037 0.00 0.00 0.00 4.09
485 495 7.827701 TCCCTGTATAAAGACATATAAGAGCG 58.172 38.462 0.00 0.00 0.00 5.03
486 496 7.450634 TCCCTGTATAAAGACATATAAGAGCGT 59.549 37.037 0.00 0.00 0.00 5.07
588 607 2.065799 AGAAAAGAGAAAGGGGCTCCA 58.934 47.619 4.79 0.00 34.83 3.86
643 662 5.163311 CCCCATCCCACAAAAATTTCCTATC 60.163 44.000 0.00 0.00 0.00 2.08
750 781 2.048603 GCCCACACTGCCATCTTCC 61.049 63.158 0.00 0.00 0.00 3.46
798 829 5.883685 TTGGTCTTATCATGCATCTCTCT 57.116 39.130 0.00 0.00 0.00 3.10
800 831 4.282957 TGGTCTTATCATGCATCTCTCTCC 59.717 45.833 0.00 0.00 0.00 3.71
802 833 4.282957 GTCTTATCATGCATCTCTCTCCCA 59.717 45.833 0.00 0.00 0.00 4.37
803 834 4.282957 TCTTATCATGCATCTCTCTCCCAC 59.717 45.833 0.00 0.00 0.00 4.61
804 835 2.171568 TCATGCATCTCTCTCCCACT 57.828 50.000 0.00 0.00 0.00 4.00
805 836 2.475155 TCATGCATCTCTCTCCCACTT 58.525 47.619 0.00 0.00 0.00 3.16
806 837 2.433604 TCATGCATCTCTCTCCCACTTC 59.566 50.000 0.00 0.00 0.00 3.01
808 839 1.273495 TGCATCTCTCTCCCACTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
809 840 1.412343 GCATCTCTCTCCCACTTCCTC 59.588 57.143 0.00 0.00 0.00 3.71
810 841 2.954539 GCATCTCTCTCCCACTTCCTCT 60.955 54.545 0.00 0.00 0.00 3.69
811 842 2.818751 TCTCTCTCCCACTTCCTCTC 57.181 55.000 0.00 0.00 0.00 3.20
812 843 2.283834 TCTCTCTCCCACTTCCTCTCT 58.716 52.381 0.00 0.00 0.00 3.10
813 844 2.241176 TCTCTCTCCCACTTCCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
814 845 2.242196 CTCTCTCCCACTTCCTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
815 846 2.241176 TCTCTCCCACTTCCTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
816 847 2.242196 CTCTCCCACTTCCTCTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
817 848 2.241176 TCTCCCACTTCCTCTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
818 849 2.242196 CTCCCACTTCCTCTCTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
819 850 2.241176 TCCCACTTCCTCTCTCTCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
820 851 2.242196 CCCACTTCCTCTCTCTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
821 852 3.545703 CCACTTCCTCTCTCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
822 853 3.200825 CCACTTCCTCTCTCTCTCTCTCT 59.799 52.174 0.00 0.00 0.00 3.10
823 854 4.446371 CACTTCCTCTCTCTCTCTCTCTC 58.554 52.174 0.00 0.00 0.00 3.20
824 855 4.163078 CACTTCCTCTCTCTCTCTCTCTCT 59.837 50.000 0.00 0.00 0.00 3.10
825 856 4.407296 ACTTCCTCTCTCTCTCTCTCTCTC 59.593 50.000 0.00 0.00 0.00 3.20
826 857 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
827 858 4.624913 TCCTCTCTCTCTCTCTCTCTCTT 58.375 47.826 0.00 0.00 0.00 2.85
828 859 5.032846 TCCTCTCTCTCTCTCTCTCTCTTT 58.967 45.833 0.00 0.00 0.00 2.52
829 860 5.129485 TCCTCTCTCTCTCTCTCTCTCTTTC 59.871 48.000 0.00 0.00 0.00 2.62
830 861 5.130145 CCTCTCTCTCTCTCTCTCTCTTTCT 59.870 48.000 0.00 0.00 0.00 2.52
831 862 6.227298 TCTCTCTCTCTCTCTCTCTTTCTC 57.773 45.833 0.00 0.00 0.00 2.87
832 863 5.960811 TCTCTCTCTCTCTCTCTCTTTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
833 864 6.097554 TCTCTCTCTCTCTCTCTCTTTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
834 865 5.960811 TCTCTCTCTCTCTCTCTTTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
884 1360 5.221165 CCCAACTTTTATATAAACCGGCAGG 60.221 44.000 7.43 0.00 45.13 4.85
910 1386 4.301628 GACATCAAGGAGCCAAAAACTTG 58.698 43.478 0.00 0.00 41.14 3.16
911 1387 2.888834 TCAAGGAGCCAAAAACTTGC 57.111 45.000 0.00 0.00 39.97 4.01
913 1389 2.101249 TCAAGGAGCCAAAAACTTGCTG 59.899 45.455 0.00 0.00 39.97 4.41
914 1390 1.780503 AGGAGCCAAAAACTTGCTGT 58.219 45.000 0.00 0.00 34.99 4.40
915 1391 2.110578 AGGAGCCAAAAACTTGCTGTT 58.889 42.857 0.00 0.00 41.29 3.16
916 1392 2.159057 AGGAGCCAAAAACTTGCTGTTG 60.159 45.455 0.00 0.00 39.13 3.33
917 1393 2.204237 GAGCCAAAAACTTGCTGTTGG 58.796 47.619 0.00 0.00 42.87 3.77
919 1395 2.314323 CCAAAAACTTGCTGTTGGCT 57.686 45.000 0.00 0.00 42.39 4.75
960 1436 3.192212 CCTTGCCAAGAAAACCTCATCTC 59.808 47.826 5.89 0.00 0.00 2.75
1089 1566 1.379044 CCATGGCAACCCTGAGGAC 60.379 63.158 0.00 0.00 36.73 3.85
1090 1567 1.746615 CATGGCAACCCTGAGGACG 60.747 63.158 0.00 0.00 36.73 4.79
1091 1568 3.628646 ATGGCAACCCTGAGGACGC 62.629 63.158 0.00 0.00 36.73 5.19
1092 1569 4.021925 GGCAACCCTGAGGACGCT 62.022 66.667 0.00 0.00 35.17 5.07
1093 1570 2.435059 GCAACCCTGAGGACGCTC 60.435 66.667 0.00 0.00 36.73 5.03
1094 1571 2.266055 CAACCCTGAGGACGCTCC 59.734 66.667 0.00 0.00 36.58 4.70
1095 1572 2.203788 AACCCTGAGGACGCTCCA 60.204 61.111 0.00 0.00 39.61 3.86
1096 1573 2.286523 AACCCTGAGGACGCTCCAG 61.287 63.158 0.00 0.00 39.61 3.86
1097 1574 4.154347 CCCTGAGGACGCTCCAGC 62.154 72.222 0.00 0.00 39.61 4.85
1098 1575 3.385384 CCTGAGGACGCTCCAGCA 61.385 66.667 0.00 4.03 39.61 4.41
1099 1576 2.183811 CTGAGGACGCTCCAGCAG 59.816 66.667 0.00 8.78 39.61 4.24
1100 1577 4.074526 TGAGGACGCTCCAGCAGC 62.075 66.667 0.00 0.00 45.85 5.25
1130 1607 2.039624 ACGGGAGGGCTCATCTGT 59.960 61.111 0.00 0.00 0.00 3.41
1131 1608 2.362369 ACGGGAGGGCTCATCTGTG 61.362 63.158 0.00 0.00 0.00 3.66
1143 1620 3.070018 CTCATCTGTGGTTCTTGACACC 58.930 50.000 0.00 0.00 36.80 4.16
1191 1668 1.284313 AGAAGAGGAAGCCCAAGGAG 58.716 55.000 0.00 0.00 33.88 3.69
1198 1675 1.276622 GAAGCCCAAGGAGGACACTA 58.723 55.000 0.00 0.00 41.22 2.74
1229 1706 1.198759 TCTGCCCACTCCAAGGTACC 61.199 60.000 2.73 2.73 0.00 3.34
1230 1707 1.462432 TGCCCACTCCAAGGTACCA 60.462 57.895 15.94 0.00 0.00 3.25
1231 1708 0.844661 TGCCCACTCCAAGGTACCAT 60.845 55.000 15.94 0.00 0.00 3.55
1235 1712 2.777692 CCCACTCCAAGGTACCATATGT 59.222 50.000 15.94 3.26 0.00 2.29
1236 1713 3.971305 CCCACTCCAAGGTACCATATGTA 59.029 47.826 15.94 0.00 0.00 2.29
1237 1714 4.597507 CCCACTCCAAGGTACCATATGTAT 59.402 45.833 15.94 0.00 0.00 2.29
1238 1715 5.783360 CCCACTCCAAGGTACCATATGTATA 59.217 44.000 15.94 0.00 0.00 1.47
1239 1716 6.070767 CCCACTCCAAGGTACCATATGTATAG 60.071 46.154 15.94 9.17 0.00 1.31
1240 1717 6.398918 CACTCCAAGGTACCATATGTATAGC 58.601 44.000 15.94 3.92 0.00 2.97
1241 1718 6.014584 CACTCCAAGGTACCATATGTATAGCA 60.015 42.308 15.94 0.00 0.00 3.49
1242 1719 6.211584 ACTCCAAGGTACCATATGTATAGCAG 59.788 42.308 15.94 6.59 0.00 4.24
1245 1722 7.457852 TCCAAGGTACCATATGTATAGCAGATT 59.542 37.037 15.94 0.00 0.00 2.40
1276 1753 7.027778 ACCTTCTATGTTTGTTCTGAAACAC 57.972 36.000 0.00 0.00 46.00 3.32
1280 1757 9.173939 CTTCTATGTTTGTTCTGAAACACATTC 57.826 33.333 12.79 0.00 46.00 2.67
1283 1760 9.467258 CTATGTTTGTTCTGAAACACATTCATT 57.533 29.630 12.79 0.00 46.00 2.57
1284 1761 8.721019 ATGTTTGTTCTGAAACACATTCATTT 57.279 26.923 0.00 0.00 46.00 2.32
1285 1762 9.814899 ATGTTTGTTCTGAAACACATTCATTTA 57.185 25.926 0.00 0.00 46.00 1.40
1286 1763 9.299963 TGTTTGTTCTGAAACACATTCATTTAG 57.700 29.630 0.00 0.00 46.62 1.85
1287 1764 7.928908 TTGTTCTGAAACACATTCATTTAGC 57.071 32.000 0.00 0.00 46.62 3.09
1288 1765 7.036996 TGTTCTGAAACACATTCATTTAGCA 57.963 32.000 0.00 0.00 46.62 3.49
1289 1766 7.140705 TGTTCTGAAACACATTCATTTAGCAG 58.859 34.615 0.00 0.00 46.62 4.24
1290 1767 6.882610 TCTGAAACACATTCATTTAGCAGT 57.117 33.333 0.00 0.00 46.62 4.40
1291 1768 7.977789 TCTGAAACACATTCATTTAGCAGTA 57.022 32.000 0.00 0.00 46.62 2.74
1292 1769 7.806690 TCTGAAACACATTCATTTAGCAGTAC 58.193 34.615 0.00 0.00 46.62 2.73
1293 1770 7.443879 TCTGAAACACATTCATTTAGCAGTACA 59.556 33.333 0.00 0.00 46.62 2.90
1294 1771 7.359595 TGAAACACATTCATTTAGCAGTACAC 58.640 34.615 0.00 0.00 43.08 2.90
1295 1772 6.875948 AACACATTCATTTAGCAGTACACA 57.124 33.333 0.00 0.00 0.00 3.72
1357 1834 6.954352 ATTTAGGAAACCAAGGAGAGTACT 57.046 37.500 0.00 0.00 0.00 2.73
1399 1876 1.424302 CAGGGCAAGGAGATGGATGAT 59.576 52.381 0.00 0.00 0.00 2.45
1402 1879 2.041350 GGGCAAGGAGATGGATGATGAT 59.959 50.000 0.00 0.00 0.00 2.45
1490 1967 3.702045 CCTTTCAGAGAGGGTACTACTGG 59.298 52.174 0.00 0.00 34.29 4.00
1492 1969 3.367646 TCAGAGAGGGTACTACTGGTG 57.632 52.381 0.00 0.00 34.29 4.17
1504 1981 6.604795 GGGTACTACTGGTGTTCTTCACTATA 59.395 42.308 0.00 0.00 45.50 1.31
1666 2144 1.174712 CCCTGGCTGTGACAAGGTTG 61.175 60.000 1.52 0.00 0.00 3.77
1726 2209 4.085619 GCACTTGAAATAACTTGTTGTGCG 60.086 41.667 0.00 0.00 38.73 5.34
1742 2225 2.632028 TGTGCGTGGGGTACTAACTTTA 59.368 45.455 0.00 0.00 31.78 1.85
1762 2245 3.375782 AGAAGGAAAAATGTGCACTGC 57.624 42.857 19.41 2.03 0.00 4.40
1848 2331 3.380004 TGCAAAACCAAGTTGAGGTACTG 59.620 43.478 3.87 0.00 41.55 2.74
1908 2396 3.620966 GCACTTAAGCCTTGGAGATGTCT 60.621 47.826 1.29 0.00 0.00 3.41
1910 2398 5.006386 CACTTAAGCCTTGGAGATGTCTTT 58.994 41.667 1.29 0.00 0.00 2.52
2004 2492 1.144708 TGGTTTTGGCATGGAGAGTGA 59.855 47.619 0.00 0.00 0.00 3.41
2180 2672 1.651240 GCATGTTCCATGACGCAGCT 61.651 55.000 8.34 0.00 0.00 4.24
2186 2678 0.107752 TCCATGACGCAGCTGCATTA 60.108 50.000 36.03 21.21 42.21 1.90
2230 2722 2.702270 TCATCTAGCCCAGCTCCATA 57.298 50.000 0.00 0.00 40.44 2.74
2271 2763 2.184631 ACCTCCTCCTCCTCCCCAA 61.185 63.158 0.00 0.00 0.00 4.12
2316 2847 3.008049 GGTTTGGCCACTTTCTCTCTCTA 59.992 47.826 3.88 0.00 37.17 2.43
2317 2848 4.249661 GTTTGGCCACTTTCTCTCTCTAG 58.750 47.826 3.88 0.00 0.00 2.43
2318 2849 3.458044 TGGCCACTTTCTCTCTCTAGA 57.542 47.619 0.00 0.00 0.00 2.43
2319 2850 8.735513 GGTTTGGCCACTTTCTCTCTCTAGAG 62.736 50.000 13.98 13.98 42.97 2.43
2388 2927 2.462125 TACATGCCTGCCGTGCTGAA 62.462 55.000 0.00 0.00 33.60 3.02
2470 3009 0.602638 TGCAAACAGTAGGTGAGCCG 60.603 55.000 0.00 0.00 40.50 5.52
2495 3034 3.849645 GCACGAACTGTTCAATCAAGTGG 60.850 47.826 19.56 3.50 0.00 4.00
2535 3074 1.349026 CTCCTTCCAGCAGTGAAAGGA 59.651 52.381 13.03 13.03 0.00 3.36
2578 3117 7.400599 ACGTCTAGGTAAAGTGACATGATTA 57.599 36.000 0.00 0.00 0.00 1.75
2623 3162 4.240881 AGGCATCATACCACTGTGAAAT 57.759 40.909 9.86 0.00 0.00 2.17
2624 3163 4.202441 AGGCATCATACCACTGTGAAATC 58.798 43.478 9.86 0.00 0.00 2.17
2634 3176 9.139174 CATACCACTGTGAAATCAAAATTAACC 57.861 33.333 9.86 0.00 0.00 2.85
2636 3178 6.983890 ACCACTGTGAAATCAAAATTAACCAC 59.016 34.615 9.86 0.00 0.00 4.16
2642 3184 7.865385 TGTGAAATCAAAATTAACCACTAGCAC 59.135 33.333 0.00 0.00 0.00 4.40
2644 3186 6.909550 AATCAAAATTAACCACTAGCACCA 57.090 33.333 0.00 0.00 0.00 4.17
2656 3198 2.304092 CTAGCACCATGTGGAATGCAT 58.696 47.619 14.65 0.00 39.03 3.96
2660 3202 2.166050 GCACCATGTGGAATGCATACAA 59.834 45.455 5.96 0.00 37.21 2.41
2661 3203 3.181473 GCACCATGTGGAATGCATACAAT 60.181 43.478 5.96 0.00 37.21 2.71
2662 3204 4.037803 GCACCATGTGGAATGCATACAATA 59.962 41.667 5.96 0.00 37.21 1.90
2663 3205 5.451659 GCACCATGTGGAATGCATACAATAA 60.452 40.000 5.96 0.00 37.21 1.40
2664 3206 6.571605 CACCATGTGGAATGCATACAATAAA 58.428 36.000 5.96 0.00 38.94 1.40
2665 3207 7.040494 CACCATGTGGAATGCATACAATAAAA 58.960 34.615 5.96 0.00 38.94 1.52
2666 3208 7.548427 CACCATGTGGAATGCATACAATAAAAA 59.452 33.333 5.96 0.00 38.94 1.94
2703 3245 9.726438 AATTTTTAGTACAGTACTTGATGCTCT 57.274 29.630 18.56 0.00 40.14 4.09
2704 3246 8.758633 TTTTTAGTACAGTACTTGATGCTCTC 57.241 34.615 18.56 0.00 40.14 3.20
2705 3247 7.704578 TTTAGTACAGTACTTGATGCTCTCT 57.295 36.000 18.56 0.00 40.14 3.10
2706 3248 5.828299 AGTACAGTACTTGATGCTCTCTC 57.172 43.478 7.48 0.00 34.86 3.20
2708 3250 5.949354 AGTACAGTACTTGATGCTCTCTCTT 59.051 40.000 7.48 0.00 34.86 2.85
2752 3355 2.423373 GGAGGAAATAATGCTGGCCAGA 60.423 50.000 37.21 21.13 0.00 3.86
2764 3367 1.053835 TGGCCAGAGTGGTGACTGAA 61.054 55.000 0.00 0.00 40.46 3.02
2765 3368 0.603975 GGCCAGAGTGGTGACTGAAC 60.604 60.000 0.00 0.00 40.46 3.18
2818 3421 5.354184 TGATCTAGTGATCCATCCCCTTA 57.646 43.478 0.00 0.00 46.34 2.69
3040 3645 2.397549 GCCATTTCTGCTGTGACAAAC 58.602 47.619 0.00 0.00 0.00 2.93
3078 3683 5.652014 TGGACAAAAACAGTCTCAGTTCATT 59.348 36.000 0.00 0.00 36.29 2.57
3098 3703 8.345565 GTTCATTTCACTTCTGAACATACAGTT 58.654 33.333 9.18 0.00 45.09 3.16
3127 3732 8.677148 TCATTTCAGCTCTAATATTTACACCC 57.323 34.615 0.00 0.00 0.00 4.61
3128 3733 8.494433 TCATTTCAGCTCTAATATTTACACCCT 58.506 33.333 0.00 0.00 0.00 4.34
3129 3734 9.125026 CATTTCAGCTCTAATATTTACACCCTT 57.875 33.333 0.00 0.00 0.00 3.95
3130 3735 8.732746 TTTCAGCTCTAATATTTACACCCTTC 57.267 34.615 0.00 0.00 0.00 3.46
3131 3736 6.513180 TCAGCTCTAATATTTACACCCTTCG 58.487 40.000 0.00 0.00 0.00 3.79
3132 3737 5.696724 CAGCTCTAATATTTACACCCTTCGG 59.303 44.000 0.00 0.00 0.00 4.30
3133 3738 5.365895 AGCTCTAATATTTACACCCTTCGGT 59.634 40.000 0.00 0.00 46.31 4.69
3134 3739 5.695363 GCTCTAATATTTACACCCTTCGGTC 59.305 44.000 0.00 0.00 42.04 4.79
3135 3740 6.165700 TCTAATATTTACACCCTTCGGTCC 57.834 41.667 0.00 0.00 42.04 4.46
3136 3741 5.901276 TCTAATATTTACACCCTTCGGTCCT 59.099 40.000 0.00 0.00 42.04 3.85
3137 3742 5.446260 AATATTTACACCCTTCGGTCCTT 57.554 39.130 0.00 0.00 42.04 3.36
3138 3743 3.801307 ATTTACACCCTTCGGTCCTTT 57.199 42.857 0.00 0.00 42.04 3.11
3139 3744 3.581265 TTTACACCCTTCGGTCCTTTT 57.419 42.857 0.00 0.00 42.04 2.27
3140 3745 3.581265 TTACACCCTTCGGTCCTTTTT 57.419 42.857 0.00 0.00 42.04 1.94
3141 3746 4.703379 TTACACCCTTCGGTCCTTTTTA 57.297 40.909 0.00 0.00 42.04 1.52
3142 3747 2.854963 ACACCCTTCGGTCCTTTTTAC 58.145 47.619 0.00 0.00 42.04 2.01
3143 3748 2.440627 ACACCCTTCGGTCCTTTTTACT 59.559 45.455 0.00 0.00 42.04 2.24
3144 3749 3.117776 ACACCCTTCGGTCCTTTTTACTT 60.118 43.478 0.00 0.00 42.04 2.24
3145 3750 3.501062 CACCCTTCGGTCCTTTTTACTTC 59.499 47.826 0.00 0.00 42.04 3.01
3146 3751 3.136992 ACCCTTCGGTCCTTTTTACTTCA 59.863 43.478 0.00 0.00 38.28 3.02
3147 3752 3.501062 CCCTTCGGTCCTTTTTACTTCAC 59.499 47.826 0.00 0.00 0.00 3.18
3148 3753 4.131596 CCTTCGGTCCTTTTTACTTCACA 58.868 43.478 0.00 0.00 0.00 3.58
3149 3754 4.760204 CCTTCGGTCCTTTTTACTTCACAT 59.240 41.667 0.00 0.00 0.00 3.21
3150 3755 5.935789 CCTTCGGTCCTTTTTACTTCACATA 59.064 40.000 0.00 0.00 0.00 2.29
3151 3756 6.598064 CCTTCGGTCCTTTTTACTTCACATAT 59.402 38.462 0.00 0.00 0.00 1.78
3152 3757 7.120726 CCTTCGGTCCTTTTTACTTCACATATT 59.879 37.037 0.00 0.00 0.00 1.28
3153 3758 9.158233 CTTCGGTCCTTTTTACTTCACATATTA 57.842 33.333 0.00 0.00 0.00 0.98
3154 3759 8.712285 TCGGTCCTTTTTACTTCACATATTAG 57.288 34.615 0.00 0.00 0.00 1.73
3155 3760 7.767198 TCGGTCCTTTTTACTTCACATATTAGG 59.233 37.037 0.00 0.00 0.00 2.69
3156 3761 7.551617 CGGTCCTTTTTACTTCACATATTAGGT 59.448 37.037 0.00 0.00 0.00 3.08
3157 3762 9.239551 GGTCCTTTTTACTTCACATATTAGGTT 57.760 33.333 0.00 0.00 0.00 3.50
3163 3768 7.837202 TTACTTCACATATTAGGTTTGTCCG 57.163 36.000 0.00 0.00 41.99 4.79
3164 3769 6.045072 ACTTCACATATTAGGTTTGTCCGA 57.955 37.500 0.00 0.00 41.99 4.55
3165 3770 6.469410 ACTTCACATATTAGGTTTGTCCGAA 58.531 36.000 0.00 0.00 41.99 4.30
3166 3771 6.594159 ACTTCACATATTAGGTTTGTCCGAAG 59.406 38.462 0.00 0.00 41.99 3.79
3167 3772 6.045072 TCACATATTAGGTTTGTCCGAAGT 57.955 37.500 0.00 0.00 41.99 3.01
3168 3773 6.103997 TCACATATTAGGTTTGTCCGAAGTC 58.896 40.000 0.00 0.00 41.99 3.01
3169 3774 5.872617 CACATATTAGGTTTGTCCGAAGTCA 59.127 40.000 0.00 0.00 41.99 3.41
3170 3775 6.370442 CACATATTAGGTTTGTCCGAAGTCAA 59.630 38.462 0.00 0.00 41.99 3.18
3171 3776 7.065803 CACATATTAGGTTTGTCCGAAGTCAAT 59.934 37.037 0.00 0.00 41.99 2.57
3172 3777 7.610305 ACATATTAGGTTTGTCCGAAGTCAATT 59.390 33.333 0.00 0.00 41.99 2.32
3173 3778 6.894339 ATTAGGTTTGTCCGAAGTCAATTT 57.106 33.333 0.00 0.00 41.99 1.82
3174 3779 4.830826 AGGTTTGTCCGAAGTCAATTTC 57.169 40.909 0.00 0.00 41.99 2.17
3175 3780 4.204012 AGGTTTGTCCGAAGTCAATTTCA 58.796 39.130 0.00 0.00 41.99 2.69
3176 3781 4.827284 AGGTTTGTCCGAAGTCAATTTCAT 59.173 37.500 0.00 0.00 41.99 2.57
3177 3782 5.048713 AGGTTTGTCCGAAGTCAATTTCATC 60.049 40.000 0.00 0.00 41.99 2.92
3178 3783 5.154222 GTTTGTCCGAAGTCAATTTCATCC 58.846 41.667 0.00 0.00 0.00 3.51
3179 3784 4.014569 TGTCCGAAGTCAATTTCATCCA 57.985 40.909 0.00 0.00 0.00 3.41
3180 3785 4.393834 TGTCCGAAGTCAATTTCATCCAA 58.606 39.130 0.00 0.00 0.00 3.53
3181 3786 4.215399 TGTCCGAAGTCAATTTCATCCAAC 59.785 41.667 0.00 0.00 0.00 3.77
3182 3787 4.455877 GTCCGAAGTCAATTTCATCCAACT 59.544 41.667 0.00 0.00 0.00 3.16
3183 3788 5.048713 GTCCGAAGTCAATTTCATCCAACTT 60.049 40.000 0.00 0.00 0.00 2.66
3184 3789 5.534654 TCCGAAGTCAATTTCATCCAACTTT 59.465 36.000 0.00 0.00 0.00 2.66
3185 3790 5.630680 CCGAAGTCAATTTCATCCAACTTTG 59.369 40.000 0.00 0.00 0.00 2.77
3186 3791 6.437928 CGAAGTCAATTTCATCCAACTTTGA 58.562 36.000 0.00 0.00 32.33 2.69
3187 3792 6.360681 CGAAGTCAATTTCATCCAACTTTGAC 59.639 38.462 5.67 5.67 41.88 3.18
3188 3793 6.089249 AGTCAATTTCATCCAACTTTGACC 57.911 37.500 9.31 0.00 42.29 4.02
3189 3794 5.598005 AGTCAATTTCATCCAACTTTGACCA 59.402 36.000 9.31 0.00 42.29 4.02
3190 3795 6.098124 AGTCAATTTCATCCAACTTTGACCAA 59.902 34.615 9.31 0.00 42.29 3.67
3191 3796 6.760770 GTCAATTTCATCCAACTTTGACCAAA 59.239 34.615 0.00 0.00 37.86 3.28
3192 3797 7.442062 GTCAATTTCATCCAACTTTGACCAAAT 59.558 33.333 0.00 0.00 37.86 2.32
3193 3798 8.646004 TCAATTTCATCCAACTTTGACCAAATA 58.354 29.630 0.00 0.00 0.00 1.40
3194 3799 9.439500 CAATTTCATCCAACTTTGACCAAATAT 57.561 29.630 0.00 0.00 0.00 1.28
3229 3834 8.677148 ATTATAGACATTCACATAACACCACC 57.323 34.615 0.00 0.00 0.00 4.61
3230 3835 4.365514 AGACATTCACATAACACCACCA 57.634 40.909 0.00 0.00 0.00 4.17
3231 3836 4.724399 AGACATTCACATAACACCACCAA 58.276 39.130 0.00 0.00 0.00 3.67
3232 3837 5.324409 AGACATTCACATAACACCACCAAT 58.676 37.500 0.00 0.00 0.00 3.16
3233 3838 6.480763 AGACATTCACATAACACCACCAATA 58.519 36.000 0.00 0.00 0.00 1.90
3234 3839 7.118723 AGACATTCACATAACACCACCAATAT 58.881 34.615 0.00 0.00 0.00 1.28
3235 3840 7.283127 AGACATTCACATAACACCACCAATATC 59.717 37.037 0.00 0.00 0.00 1.63
3236 3841 6.889177 ACATTCACATAACACCACCAATATCA 59.111 34.615 0.00 0.00 0.00 2.15
3237 3842 7.560991 ACATTCACATAACACCACCAATATCAT 59.439 33.333 0.00 0.00 0.00 2.45
3238 3843 7.953005 TTCACATAACACCACCAATATCATT 57.047 32.000 0.00 0.00 0.00 2.57
3239 3844 9.639563 ATTCACATAACACCACCAATATCATTA 57.360 29.630 0.00 0.00 0.00 1.90
3240 3845 8.675705 TCACATAACACCACCAATATCATTAG 57.324 34.615 0.00 0.00 0.00 1.73
3241 3846 8.490311 TCACATAACACCACCAATATCATTAGA 58.510 33.333 0.00 0.00 0.00 2.10
3242 3847 9.288576 CACATAACACCACCAATATCATTAGAT 57.711 33.333 0.00 0.00 38.29 1.98
3243 3848 9.866655 ACATAACACCACCAATATCATTAGATT 57.133 29.630 0.00 0.00 35.67 2.40
3247 3852 8.627208 ACACCACCAATATCATTAGATTCATC 57.373 34.615 0.00 0.00 35.67 2.92
3248 3853 8.443176 ACACCACCAATATCATTAGATTCATCT 58.557 33.333 0.00 0.00 40.86 2.90
3249 3854 9.293404 CACCACCAATATCATTAGATTCATCTT 57.707 33.333 0.00 0.00 38.32 2.40
3250 3855 9.293404 ACCACCAATATCATTAGATTCATCTTG 57.707 33.333 0.00 0.00 38.32 3.02
3251 3856 8.737175 CCACCAATATCATTAGATTCATCTTGG 58.263 37.037 0.00 0.00 38.32 3.61
3252 3857 9.511272 CACCAATATCATTAGATTCATCTTGGA 57.489 33.333 0.00 0.00 38.32 3.53
3342 3947 5.169836 ACTTAGCAAAGTTTGACTTTCGG 57.830 39.130 19.82 8.79 44.47 4.30
3343 3948 2.492019 AGCAAAGTTTGACTTTCGGC 57.508 45.000 19.82 5.65 44.47 5.54
3344 3949 1.748493 AGCAAAGTTTGACTTTCGGCA 59.252 42.857 19.82 0.00 44.47 5.69
3345 3950 2.165437 AGCAAAGTTTGACTTTCGGCAA 59.835 40.909 19.82 0.00 44.47 4.52
3346 3951 2.926838 GCAAAGTTTGACTTTCGGCAAA 59.073 40.909 19.82 0.00 44.47 3.68
3347 3952 3.555547 GCAAAGTTTGACTTTCGGCAAAT 59.444 39.130 19.82 0.00 44.47 2.32
3348 3953 4.318050 GCAAAGTTTGACTTTCGGCAAATC 60.318 41.667 19.82 0.00 44.47 2.17
3349 3954 3.643159 AGTTTGACTTTCGGCAAATCC 57.357 42.857 0.00 0.00 36.51 3.01
3350 3955 2.955660 AGTTTGACTTTCGGCAAATCCA 59.044 40.909 0.00 0.00 36.51 3.41
3351 3956 3.383185 AGTTTGACTTTCGGCAAATCCAA 59.617 39.130 0.00 0.00 36.51 3.53
3352 3957 4.039124 AGTTTGACTTTCGGCAAATCCAAT 59.961 37.500 0.00 0.00 36.51 3.16
3353 3958 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
3354 3959 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
3355 3960 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
3356 3961 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
3357 3962 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
3358 3963 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
3359 3964 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
3360 3965 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
3361 3966 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
3362 3967 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
3363 3968 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
3364 3969 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
3365 3970 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
3366 3971 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
3367 3972 6.128742 GCAAATCCAATGTGCAGAGTAAAAAG 60.129 38.462 0.00 0.00 38.19 2.27
3368 3973 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
3369 3974 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
3370 3975 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
3371 3976 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
3372 3977 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
3373 3978 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
3374 3979 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3375 3980 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3404 4009 5.556915 ACATGCACCTAGCTACTTGTAAAA 58.443 37.500 0.00 0.00 45.94 1.52
3408 4013 6.472887 TGCACCTAGCTACTTGTAAAATTCT 58.527 36.000 0.00 0.00 45.94 2.40
3455 4060 3.337694 TTACACGGAAATACCCAGTGG 57.662 47.619 0.63 0.63 36.09 4.00
3456 4061 1.354101 ACACGGAAATACCCAGTGGA 58.646 50.000 11.95 0.00 36.09 4.02
3489 4094 5.425196 CAATGGACCTGGATTGGAAATTT 57.575 39.130 0.00 0.00 0.00 1.82
3490 4095 5.422145 CAATGGACCTGGATTGGAAATTTC 58.578 41.667 9.83 9.83 0.00 2.17
3491 4096 4.402616 TGGACCTGGATTGGAAATTTCT 57.597 40.909 17.42 0.00 0.00 2.52
3492 4097 4.750941 TGGACCTGGATTGGAAATTTCTT 58.249 39.130 17.42 3.64 0.00 2.52
3498 4103 8.491045 ACCTGGATTGGAAATTTCTTTTTAGA 57.509 30.769 17.42 0.00 0.00 2.10
3500 4105 9.777297 CCTGGATTGGAAATTTCTTTTTAGAAA 57.223 29.630 17.42 3.12 41.33 2.52
3523 4128 8.579682 AAAATTCAAAGAGTCGAAAATTCCTG 57.420 30.769 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.926710 CGATGAAATAGGATTAAGGACATGTAC 58.073 37.037 0.00 0.00 0.00 2.90
1 2 8.866093 TCGATGAAATAGGATTAAGGACATGTA 58.134 33.333 0.00 0.00 0.00 2.29
2 3 7.735917 TCGATGAAATAGGATTAAGGACATGT 58.264 34.615 0.00 0.00 0.00 3.21
3 4 8.090831 TCTCGATGAAATAGGATTAAGGACATG 58.909 37.037 0.00 0.00 0.00 3.21
4 5 8.091449 GTCTCGATGAAATAGGATTAAGGACAT 58.909 37.037 0.00 0.00 0.00 3.06
5 6 7.069455 TGTCTCGATGAAATAGGATTAAGGACA 59.931 37.037 0.00 0.00 0.00 4.02
6 7 7.434492 TGTCTCGATGAAATAGGATTAAGGAC 58.566 38.462 0.00 0.00 0.00 3.85
7 8 7.597288 TGTCTCGATGAAATAGGATTAAGGA 57.403 36.000 0.00 0.00 0.00 3.36
8 9 7.096023 CGTTGTCTCGATGAAATAGGATTAAGG 60.096 40.741 0.00 0.00 0.00 2.69
26 27 3.003763 AGGAGGGGCCGTTGTCTC 61.004 66.667 0.00 0.00 43.43 3.36
34 35 1.452108 CGTTTGATCAGGAGGGGCC 60.452 63.158 0.00 0.00 0.00 5.80
35 36 0.181350 ATCGTTTGATCAGGAGGGGC 59.819 55.000 0.00 0.00 0.00 5.80
44 45 4.010349 ACTTTCCTGGGAATCGTTTGATC 58.990 43.478 2.69 0.00 32.24 2.92
45 46 4.034285 ACTTTCCTGGGAATCGTTTGAT 57.966 40.909 2.69 0.00 35.98 2.57
47 48 3.821033 AGAACTTTCCTGGGAATCGTTTG 59.179 43.478 14.32 0.00 32.36 2.93
49 50 3.790089 AGAACTTTCCTGGGAATCGTT 57.210 42.857 13.53 13.53 33.76 3.85
52 59 4.080863 TCAGCTAGAACTTTCCTGGGAATC 60.081 45.833 2.69 0.00 33.79 2.52
67 74 3.064408 CGCATTTGCAGAATTCAGCTAGA 59.936 43.478 21.58 9.42 42.21 2.43
71 78 1.274596 CCGCATTTGCAGAATTCAGC 58.725 50.000 15.36 15.36 42.21 4.26
75 82 1.153784 CGCCCGCATTTGCAGAATT 60.154 52.632 3.13 0.00 42.21 2.17
83 90 1.739338 TTGTGGTTTCGCCCGCATTT 61.739 50.000 3.26 0.00 44.11 2.32
91 98 1.064357 TCTTTCCGTTTGTGGTTTCGC 59.936 47.619 0.00 0.00 0.00 4.70
93 100 6.656314 AATTTTCTTTCCGTTTGTGGTTTC 57.344 33.333 0.00 0.00 0.00 2.78
320 330 6.485171 ACCTGCAAAGGTAATTAAGTGATCT 58.515 36.000 0.00 0.00 41.04 2.75
323 333 7.668052 ACATAACCTGCAAAGGTAATTAAGTGA 59.332 33.333 0.00 0.00 42.20 3.41
401 411 6.310711 GCTTGGTCAATTGACTGTACTAGTAC 59.689 42.308 31.81 23.58 44.20 2.73
404 414 5.482908 AGCTTGGTCAATTGACTGTACTAG 58.517 41.667 31.81 22.33 44.20 2.57
405 415 5.483685 AGCTTGGTCAATTGACTGTACTA 57.516 39.130 31.81 14.98 44.20 1.82
409 419 4.082571 GCATTAGCTTGGTCAATTGACTGT 60.083 41.667 31.81 17.22 40.31 3.55
410 420 4.082625 TGCATTAGCTTGGTCAATTGACTG 60.083 41.667 31.81 21.94 42.26 3.51
462 472 9.477484 AAACGCTCTTATATGTCTTTATACAGG 57.523 33.333 0.00 0.00 31.70 4.00
493 503 9.289303 GCCACATACTACACATTTTAGATTTTG 57.711 33.333 0.00 0.00 0.00 2.44
494 504 8.466798 GGCCACATACTACACATTTTAGATTTT 58.533 33.333 0.00 0.00 0.00 1.82
495 505 7.613801 TGGCCACATACTACACATTTTAGATTT 59.386 33.333 0.00 0.00 0.00 2.17
497 507 6.658849 TGGCCACATACTACACATTTTAGAT 58.341 36.000 0.00 0.00 0.00 1.98
499 509 6.751514 TTGGCCACATACTACACATTTTAG 57.248 37.500 3.88 0.00 0.00 1.85
500 510 6.717540 ACTTTGGCCACATACTACACATTTTA 59.282 34.615 3.88 0.00 0.00 1.52
513 532 4.592778 ACATTTTTCCTACTTTGGCCACAT 59.407 37.500 3.88 0.00 0.00 3.21
517 536 4.600692 ACACATTTTTCCTACTTTGGCC 57.399 40.909 0.00 0.00 0.00 5.36
588 607 6.147437 TGGGGTGTTTTAATCTGATAGGTT 57.853 37.500 0.00 0.00 0.00 3.50
624 643 7.789202 TGATTGATAGGAAATTTTTGTGGGA 57.211 32.000 0.00 0.00 0.00 4.37
750 781 6.470278 TCATCACTGCATCTCTATTAATGGG 58.530 40.000 0.00 0.00 0.00 4.00
798 829 2.241176 GAGAGAGAGAGAGGAAGTGGGA 59.759 54.545 0.00 0.00 0.00 4.37
800 831 3.200825 AGAGAGAGAGAGAGAGGAAGTGG 59.799 52.174 0.00 0.00 0.00 4.00
802 833 4.366267 AGAGAGAGAGAGAGAGAGGAAGT 58.634 47.826 0.00 0.00 0.00 3.01
803 834 4.653341 AGAGAGAGAGAGAGAGAGAGGAAG 59.347 50.000 0.00 0.00 0.00 3.46
804 835 4.624913 AGAGAGAGAGAGAGAGAGAGGAA 58.375 47.826 0.00 0.00 0.00 3.36
805 836 4.271807 AGAGAGAGAGAGAGAGAGAGGA 57.728 50.000 0.00 0.00 0.00 3.71
806 837 5.130145 AGAAAGAGAGAGAGAGAGAGAGAGG 59.870 48.000 0.00 0.00 0.00 3.69
808 839 5.960811 AGAGAAAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
809 840 6.098124 AGAGAGAAAGAGAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
810 841 5.960811 AGAGAGAAAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
811 842 6.098124 AGAGAGAGAAAGAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
812 843 5.960811 AGAGAGAGAAAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
813 844 6.098124 AGAGAGAGAGAAAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
814 845 5.960811 AGAGAGAGAGAAAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
815 846 6.098124 AGAGAGAGAGAGAAAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
816 847 5.960811 AGAGAGAGAGAGAAAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
817 848 6.098124 AGAGAGAGAGAGAGAAAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
818 849 5.960811 AGAGAGAGAGAGAGAAAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
819 850 6.098124 AGAGAGAGAGAGAGAGAAAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
820 851 5.960811 AGAGAGAGAGAGAGAGAAAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
821 852 6.232581 AGAGAGAGAGAGAGAGAAAGAGAG 57.767 45.833 0.00 0.00 0.00 3.20
822 853 6.098409 GGTAGAGAGAGAGAGAGAGAAAGAGA 59.902 46.154 0.00 0.00 0.00 3.10
823 854 6.127054 TGGTAGAGAGAGAGAGAGAGAAAGAG 60.127 46.154 0.00 0.00 0.00 2.85
824 855 5.724370 TGGTAGAGAGAGAGAGAGAGAAAGA 59.276 44.000 0.00 0.00 0.00 2.52
825 856 5.989477 TGGTAGAGAGAGAGAGAGAGAAAG 58.011 45.833 0.00 0.00 0.00 2.62
826 857 6.575244 ATGGTAGAGAGAGAGAGAGAGAAA 57.425 41.667 0.00 0.00 0.00 2.52
827 858 6.575244 AATGGTAGAGAGAGAGAGAGAGAA 57.425 41.667 0.00 0.00 0.00 2.87
828 859 7.872061 ATAATGGTAGAGAGAGAGAGAGAGA 57.128 40.000 0.00 0.00 0.00 3.10
829 860 8.041323 GGTATAATGGTAGAGAGAGAGAGAGAG 58.959 44.444 0.00 0.00 0.00 3.20
830 861 7.037873 GGGTATAATGGTAGAGAGAGAGAGAGA 60.038 44.444 0.00 0.00 0.00 3.10
831 862 7.110155 GGGTATAATGGTAGAGAGAGAGAGAG 58.890 46.154 0.00 0.00 0.00 3.20
832 863 6.012333 GGGGTATAATGGTAGAGAGAGAGAGA 60.012 46.154 0.00 0.00 0.00 3.10
833 864 6.011981 AGGGGTATAATGGTAGAGAGAGAGAG 60.012 46.154 0.00 0.00 0.00 3.20
834 865 5.858408 AGGGGTATAATGGTAGAGAGAGAGA 59.142 44.000 0.00 0.00 0.00 3.10
884 1360 0.620556 TTGGCTCCTTGATGTCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
910 1386 1.803555 GTTCAGAGAAGAGCCAACAGC 59.196 52.381 0.00 0.00 44.25 4.40
911 1387 2.421619 GGTTCAGAGAAGAGCCAACAG 58.578 52.381 0.00 0.00 38.61 3.16
913 1389 1.611936 GGGGTTCAGAGAAGAGCCAAC 60.612 57.143 0.00 0.00 40.31 3.77
914 1390 0.693049 GGGGTTCAGAGAAGAGCCAA 59.307 55.000 0.00 0.00 40.31 4.52
915 1391 0.178891 AGGGGTTCAGAGAAGAGCCA 60.179 55.000 0.00 0.00 40.31 4.75
916 1392 0.539518 GAGGGGTTCAGAGAAGAGCC 59.460 60.000 0.00 0.00 38.09 4.70
917 1393 0.539518 GGAGGGGTTCAGAGAAGAGC 59.460 60.000 0.00 0.00 0.00 4.09
918 1394 2.107366 GAGGAGGGGTTCAGAGAAGAG 58.893 57.143 0.00 0.00 0.00 2.85
919 1395 1.273324 GGAGGAGGGGTTCAGAGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
960 1436 1.279271 AGCTAGCTACCCTTGTGTTGG 59.721 52.381 17.69 0.00 0.00 3.77
985 1462 2.208619 CCATTGCCCAACAGCCACA 61.209 57.895 0.00 0.00 0.00 4.17
1091 1568 3.128188 CTGCTGCTGCTGCTGGAG 61.128 66.667 27.67 23.82 46.01 3.86
1097 1574 3.432588 GTGAGGCTGCTGCTGCTG 61.433 66.667 26.79 16.73 40.48 4.41
1115 1592 1.566298 AACCACAGATGAGCCCTCCC 61.566 60.000 0.00 0.00 0.00 4.30
1125 1602 1.073923 GGGGTGTCAAGAACCACAGAT 59.926 52.381 0.00 0.00 41.10 2.90
1130 1607 1.142870 CAAGAGGGGTGTCAAGAACCA 59.857 52.381 0.00 0.00 39.65 3.67
1131 1608 1.143073 ACAAGAGGGGTGTCAAGAACC 59.857 52.381 0.00 0.00 36.94 3.62
1143 1620 2.674380 GCAGTGGCCACAAGAGGG 60.674 66.667 36.39 18.64 0.00 4.30
1191 1668 0.977395 AGTTGAGGCTGGTAGTGTCC 59.023 55.000 0.00 0.00 0.00 4.02
1198 1675 2.753029 GGCAGAGTTGAGGCTGGT 59.247 61.111 0.00 0.00 32.83 4.00
1237 1714 9.905713 AACATAGAAGGTTCAATAAATCTGCTA 57.094 29.630 0.00 0.00 40.02 3.49
1238 1715 8.814038 AACATAGAAGGTTCAATAAATCTGCT 57.186 30.769 0.00 0.00 37.73 4.24
1239 1716 9.294030 CAAACATAGAAGGTTCAATAAATCTGC 57.706 33.333 0.00 0.00 0.00 4.26
1245 1722 9.567776 TCAGAACAAACATAGAAGGTTCAATAA 57.432 29.630 0.00 0.00 40.11 1.40
1249 1726 7.338196 TGTTTCAGAACAAACATAGAAGGTTCA 59.662 33.333 0.00 0.00 42.54 3.18
1253 1730 7.026631 TGTGTTTCAGAACAAACATAGAAGG 57.973 36.000 2.31 0.00 46.62 3.46
1276 1753 6.252015 GCAACATGTGTACTGCTAAATGAATG 59.748 38.462 12.04 0.00 31.14 2.67
1280 1757 5.300969 AGCAACATGTGTACTGCTAAATG 57.699 39.130 18.79 1.59 39.52 2.32
1283 1760 5.353956 CCATAAGCAACATGTGTACTGCTAA 59.646 40.000 20.14 0.00 40.17 3.09
1284 1761 4.875536 CCATAAGCAACATGTGTACTGCTA 59.124 41.667 20.14 10.90 40.17 3.49
1285 1762 3.691118 CCATAAGCAACATGTGTACTGCT 59.309 43.478 15.42 15.42 42.12 4.24
1286 1763 3.689161 TCCATAAGCAACATGTGTACTGC 59.311 43.478 11.49 11.49 33.28 4.40
1287 1764 6.763135 ACTATCCATAAGCAACATGTGTACTG 59.237 38.462 0.00 0.00 0.00 2.74
1288 1765 6.889198 ACTATCCATAAGCAACATGTGTACT 58.111 36.000 0.00 0.00 0.00 2.73
1289 1766 8.833231 ATACTATCCATAAGCAACATGTGTAC 57.167 34.615 0.00 0.00 0.00 2.90
1290 1767 9.271828 CAATACTATCCATAAGCAACATGTGTA 57.728 33.333 0.00 0.00 0.00 2.90
1291 1768 7.775093 ACAATACTATCCATAAGCAACATGTGT 59.225 33.333 0.00 0.00 0.00 3.72
1292 1769 8.158169 ACAATACTATCCATAAGCAACATGTG 57.842 34.615 0.00 0.00 0.00 3.21
1293 1770 8.752005 AACAATACTATCCATAAGCAACATGT 57.248 30.769 0.00 0.00 0.00 3.21
1294 1771 9.454585 CAAACAATACTATCCATAAGCAACATG 57.545 33.333 0.00 0.00 0.00 3.21
1295 1772 9.189156 ACAAACAATACTATCCATAAGCAACAT 57.811 29.630 0.00 0.00 0.00 2.71
1357 1834 2.053747 TTTTGCCTCCCCTCTTCCTA 57.946 50.000 0.00 0.00 0.00 2.94
1399 1876 1.635487 CCCTTTGGTTCCTCCTCATCA 59.365 52.381 0.00 0.00 37.07 3.07
1402 1879 2.474924 CCCCTTTGGTTCCTCCTCA 58.525 57.895 0.00 0.00 37.07 3.86
1504 1981 5.133221 AGCTACAACCACACAAGAGAAAAT 58.867 37.500 0.00 0.00 0.00 1.82
1666 2144 9.583765 CTAATTAGGAGTGGTCAACTAACTTAC 57.416 37.037 4.42 0.00 40.07 2.34
1726 2209 6.364568 TTCCTTCTAAAGTTAGTACCCCAC 57.635 41.667 0.00 0.00 32.61 4.61
1742 2225 2.961062 AGCAGTGCACATTTTTCCTTCT 59.039 40.909 21.04 0.00 0.00 2.85
1762 2245 6.106673 CCTTACCAGTGACCTATACACAAAG 58.893 44.000 0.00 0.00 40.25 2.77
1873 2361 7.388638 AGGCTTAAGTGCTTTCCCTATATAA 57.611 36.000 4.02 0.00 0.00 0.98
1882 2370 3.412386 TCTCCAAGGCTTAAGTGCTTTC 58.588 45.455 0.00 0.00 29.69 2.62
1891 2379 6.374417 AACTAAAGACATCTCCAAGGCTTA 57.626 37.500 0.00 0.00 0.00 3.09
2004 2492 1.708993 TTGGTCACTGAAGGCAGCCT 61.709 55.000 8.70 8.70 46.26 4.58
2120 2612 9.513727 AACAACAAATTTATTTCCAAAATGTGC 57.486 25.926 0.00 0.00 35.72 4.57
2137 2629 6.703165 GCCTTCAATCTTCTGAAACAACAAAT 59.297 34.615 0.00 0.00 34.96 2.32
2230 2722 0.184451 GGTGTCCATCATGGCCTGAT 59.816 55.000 3.32 8.11 45.78 2.90
2249 2741 3.151022 GAGGAGGAGGAGGTGCCG 61.151 72.222 0.00 0.00 43.43 5.69
2271 2763 1.348036 GGTGCCTTGAAGTGAGTAGGT 59.652 52.381 0.00 0.00 0.00 3.08
2319 2850 6.751425 GTCCTGAATGATCGATCATGTAGATC 59.249 42.308 35.14 27.84 46.22 2.75
2320 2851 6.350864 GGTCCTGAATGATCGATCATGTAGAT 60.351 42.308 35.14 22.31 46.22 1.98
2388 2927 1.379443 CACACATGGGCAGCCTCAT 60.379 57.895 12.43 10.44 0.00 2.90
2470 3009 2.143122 TGATTGAACAGTTCGTGCCTC 58.857 47.619 8.80 2.03 0.00 4.70
2495 3034 4.389077 GGAGCACATGTAGTTACTGAACAC 59.611 45.833 0.00 0.00 38.10 3.32
2535 3074 3.181448 ACGTTGTCAAATGTAGGGTCCTT 60.181 43.478 0.00 0.00 33.64 3.36
2578 3117 8.784043 CCTACTTTTACTGAAACTTAAGTGCAT 58.216 33.333 9.34 0.00 0.00 3.96
2623 3162 5.772672 ACATGGTGCTAGTGGTTAATTTTGA 59.227 36.000 0.00 0.00 0.00 2.69
2624 3163 5.863397 CACATGGTGCTAGTGGTTAATTTTG 59.137 40.000 0.00 0.00 0.00 2.44
2634 3176 1.402968 GCATTCCACATGGTGCTAGTG 59.597 52.381 6.31 0.00 35.17 2.74
2636 3178 1.753930 TGCATTCCACATGGTGCTAG 58.246 50.000 13.04 0.00 37.87 3.42
2680 3222 8.123639 AGAGAGCATCAAGTACTGTACTAAAA 57.876 34.615 19.97 9.54 38.26 1.52
2681 3223 7.612244 AGAGAGAGCATCAAGTACTGTACTAAA 59.388 37.037 19.97 11.83 38.26 1.85
2682 3224 7.113437 AGAGAGAGCATCAAGTACTGTACTAA 58.887 38.462 19.97 12.16 38.26 2.24
2685 3227 5.828299 AGAGAGAGCATCAAGTACTGTAC 57.172 43.478 9.93 9.93 37.82 2.90
2708 3250 5.279910 CCCCTGCTAATCACAAATCCAAAAA 60.280 40.000 0.00 0.00 0.00 1.94
2714 3315 3.117888 TCCTCCCCTGCTAATCACAAATC 60.118 47.826 0.00 0.00 0.00 2.17
2715 3316 2.852449 TCCTCCCCTGCTAATCACAAAT 59.148 45.455 0.00 0.00 0.00 2.32
2752 3355 1.486310 TGCTTCAGTTCAGTCACCACT 59.514 47.619 0.00 0.00 0.00 4.00
2764 3367 3.144506 CAAACTCATCTGGTGCTTCAGT 58.855 45.455 6.73 0.00 36.25 3.41
2765 3368 3.405831 TCAAACTCATCTGGTGCTTCAG 58.594 45.455 1.28 1.28 36.17 3.02
3040 3645 4.811555 TTTGTCCAAGAGTCAATTGTCG 57.188 40.909 5.13 0.00 0.00 4.35
3078 3683 7.714813 TGATCAAACTGTATGTTCAGAAGTGAA 59.285 33.333 0.00 0.00 40.55 3.18
3127 3732 5.941948 ATGTGAAGTAAAAAGGACCGAAG 57.058 39.130 0.00 0.00 0.00 3.79
3128 3733 7.989416 AATATGTGAAGTAAAAAGGACCGAA 57.011 32.000 0.00 0.00 0.00 4.30
3129 3734 7.767198 CCTAATATGTGAAGTAAAAAGGACCGA 59.233 37.037 0.00 0.00 0.00 4.69
3130 3735 7.551617 ACCTAATATGTGAAGTAAAAAGGACCG 59.448 37.037 0.00 0.00 0.00 4.79
3131 3736 8.803397 ACCTAATATGTGAAGTAAAAAGGACC 57.197 34.615 0.00 0.00 0.00 4.46
3137 3742 8.723311 CGGACAAACCTAATATGTGAAGTAAAA 58.277 33.333 0.00 0.00 36.31 1.52
3138 3743 8.095792 TCGGACAAACCTAATATGTGAAGTAAA 58.904 33.333 0.00 0.00 36.31 2.01
3139 3744 7.613585 TCGGACAAACCTAATATGTGAAGTAA 58.386 34.615 0.00 0.00 36.31 2.24
3140 3745 7.172868 TCGGACAAACCTAATATGTGAAGTA 57.827 36.000 0.00 0.00 36.31 2.24
3141 3746 6.045072 TCGGACAAACCTAATATGTGAAGT 57.955 37.500 0.00 0.00 36.31 3.01
3142 3747 6.594159 ACTTCGGACAAACCTAATATGTGAAG 59.406 38.462 0.00 0.00 35.18 3.02
3143 3748 6.469410 ACTTCGGACAAACCTAATATGTGAA 58.531 36.000 0.00 0.00 36.31 3.18
3144 3749 6.045072 ACTTCGGACAAACCTAATATGTGA 57.955 37.500 0.00 0.00 36.31 3.58
3145 3750 5.872617 TGACTTCGGACAAACCTAATATGTG 59.127 40.000 0.00 0.00 36.31 3.21
3146 3751 6.045072 TGACTTCGGACAAACCTAATATGT 57.955 37.500 0.00 0.00 36.31 2.29
3147 3752 6.978343 TTGACTTCGGACAAACCTAATATG 57.022 37.500 0.00 0.00 36.31 1.78
3148 3753 8.575649 AAATTGACTTCGGACAAACCTAATAT 57.424 30.769 0.00 0.00 33.90 1.28
3149 3754 7.662258 TGAAATTGACTTCGGACAAACCTAATA 59.338 33.333 0.00 0.00 33.90 0.98
3150 3755 6.488683 TGAAATTGACTTCGGACAAACCTAAT 59.511 34.615 0.00 0.00 33.90 1.73
3151 3756 5.823570 TGAAATTGACTTCGGACAAACCTAA 59.176 36.000 0.00 0.00 33.90 2.69
3152 3757 5.369833 TGAAATTGACTTCGGACAAACCTA 58.630 37.500 0.00 0.00 33.90 3.08
3153 3758 4.204012 TGAAATTGACTTCGGACAAACCT 58.796 39.130 0.00 0.00 33.90 3.50
3154 3759 4.561735 TGAAATTGACTTCGGACAAACC 57.438 40.909 0.00 0.00 33.90 3.27
3155 3760 5.154222 GGATGAAATTGACTTCGGACAAAC 58.846 41.667 0.00 0.00 33.90 2.93
3156 3761 4.824537 TGGATGAAATTGACTTCGGACAAA 59.175 37.500 0.00 0.00 33.90 2.83
3157 3762 4.393834 TGGATGAAATTGACTTCGGACAA 58.606 39.130 0.00 0.00 34.59 3.18
3158 3763 4.014569 TGGATGAAATTGACTTCGGACA 57.985 40.909 0.00 0.00 0.00 4.02
3159 3764 4.455877 AGTTGGATGAAATTGACTTCGGAC 59.544 41.667 0.00 0.00 0.00 4.79
3160 3765 4.651778 AGTTGGATGAAATTGACTTCGGA 58.348 39.130 0.00 0.00 0.00 4.55
3161 3766 5.376854 AAGTTGGATGAAATTGACTTCGG 57.623 39.130 0.00 0.00 0.00 4.30
3162 3767 6.360681 GTCAAAGTTGGATGAAATTGACTTCG 59.639 38.462 8.70 0.00 38.47 3.79
3163 3768 6.642540 GGTCAAAGTTGGATGAAATTGACTTC 59.357 38.462 13.97 0.00 39.91 3.01
3164 3769 6.098124 TGGTCAAAGTTGGATGAAATTGACTT 59.902 34.615 13.97 0.00 39.91 3.01
3165 3770 5.598005 TGGTCAAAGTTGGATGAAATTGACT 59.402 36.000 13.97 0.00 39.91 3.41
3166 3771 5.841810 TGGTCAAAGTTGGATGAAATTGAC 58.158 37.500 7.68 7.68 39.61 3.18
3167 3772 6.477053 TTGGTCAAAGTTGGATGAAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
3168 3773 7.733402 ATTTGGTCAAAGTTGGATGAAATTG 57.267 32.000 2.55 0.00 33.32 2.32
3203 3808 9.120538 GGTGGTGTTATGTGAATGTCTATAATT 57.879 33.333 0.00 0.00 0.00 1.40
3204 3809 8.271458 TGGTGGTGTTATGTGAATGTCTATAAT 58.729 33.333 0.00 0.00 0.00 1.28
3205 3810 7.625469 TGGTGGTGTTATGTGAATGTCTATAA 58.375 34.615 0.00 0.00 0.00 0.98
3206 3811 7.189079 TGGTGGTGTTATGTGAATGTCTATA 57.811 36.000 0.00 0.00 0.00 1.31
3207 3812 6.061022 TGGTGGTGTTATGTGAATGTCTAT 57.939 37.500 0.00 0.00 0.00 1.98
3208 3813 5.491323 TGGTGGTGTTATGTGAATGTCTA 57.509 39.130 0.00 0.00 0.00 2.59
3209 3814 4.365514 TGGTGGTGTTATGTGAATGTCT 57.634 40.909 0.00 0.00 0.00 3.41
3210 3815 5.643379 ATTGGTGGTGTTATGTGAATGTC 57.357 39.130 0.00 0.00 0.00 3.06
3211 3816 6.889177 TGATATTGGTGGTGTTATGTGAATGT 59.111 34.615 0.00 0.00 0.00 2.71
3212 3817 7.332213 TGATATTGGTGGTGTTATGTGAATG 57.668 36.000 0.00 0.00 0.00 2.67
3213 3818 8.537728 AATGATATTGGTGGTGTTATGTGAAT 57.462 30.769 0.00 0.00 0.00 2.57
3214 3819 7.953005 AATGATATTGGTGGTGTTATGTGAA 57.047 32.000 0.00 0.00 0.00 3.18
3215 3820 8.490311 TCTAATGATATTGGTGGTGTTATGTGA 58.510 33.333 0.00 0.00 0.00 3.58
3216 3821 8.675705 TCTAATGATATTGGTGGTGTTATGTG 57.324 34.615 0.00 0.00 0.00 3.21
3217 3822 9.866655 AATCTAATGATATTGGTGGTGTTATGT 57.133 29.630 0.00 0.00 31.70 2.29
3221 3826 9.071276 GATGAATCTAATGATATTGGTGGTGTT 57.929 33.333 0.00 0.00 31.70 3.32
3222 3827 8.443176 AGATGAATCTAATGATATTGGTGGTGT 58.557 33.333 0.00 0.00 34.85 4.16
3223 3828 8.859236 AGATGAATCTAATGATATTGGTGGTG 57.141 34.615 0.00 0.00 34.85 4.17
3224 3829 9.293404 CAAGATGAATCTAATGATATTGGTGGT 57.707 33.333 0.00 0.00 35.76 4.16
3225 3830 8.737175 CCAAGATGAATCTAATGATATTGGTGG 58.263 37.037 0.00 0.00 35.76 4.61
3226 3831 9.511272 TCCAAGATGAATCTAATGATATTGGTG 57.489 33.333 0.00 0.00 35.76 4.17
3326 3931 6.190408 TGGATTTGCCGAAAGTCAAACTTTG 61.190 40.000 9.65 0.00 42.50 2.77
3327 3932 4.142049 TGGATTTGCCGAAAGTCAAACTTT 60.142 37.500 4.82 4.82 41.99 2.66
3328 3933 3.383185 TGGATTTGCCGAAAGTCAAACTT 59.617 39.130 0.00 0.00 38.90 2.66
3329 3934 2.955660 TGGATTTGCCGAAAGTCAAACT 59.044 40.909 0.00 0.00 40.66 2.66
3330 3935 3.363341 TGGATTTGCCGAAAGTCAAAC 57.637 42.857 0.00 0.00 40.66 2.93
3331 3936 4.202202 ACATTGGATTTGCCGAAAGTCAAA 60.202 37.500 0.00 0.00 40.66 2.69
3332 3937 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
3333 3938 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
3334 3939 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
3335 3940 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
3336 3941 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
3337 3942 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
3338 3943 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
3339 3944 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
3340 3945 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
3341 3946 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
3342 3947 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
3343 3948 6.366877 CCTTTTTACTCTGCACATTGGATTTG 59.633 38.462 0.00 0.00 0.00 2.32
3344 3949 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
3345 3950 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
3346 3951 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
3347 3952 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
3348 3953 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
3349 3954 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
3350 3955 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
3351 3956 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
3352 3957 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
3353 3958 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
3354 3959 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3355 3960 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3356 3961 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
3357 3962 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
3358 3963 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
3359 3964 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
3360 3965 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
3361 3966 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3362 3967 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
3363 3968 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
3364 3969 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
3365 3970 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
3366 3971 0.397254 CATGTACTCCCTCCGGTCCT 60.397 60.000 0.00 0.00 0.00 3.85
3367 3972 2.029307 GCATGTACTCCCTCCGGTCC 62.029 65.000 0.00 0.00 0.00 4.46
3368 3973 1.327690 TGCATGTACTCCCTCCGGTC 61.328 60.000 0.00 0.00 0.00 4.79
3369 3974 1.305802 TGCATGTACTCCCTCCGGT 60.306 57.895 0.00 0.00 0.00 5.28
3370 3975 1.144057 GTGCATGTACTCCCTCCGG 59.856 63.158 6.69 0.00 0.00 5.14
3371 3976 1.144057 GGTGCATGTACTCCCTCCG 59.856 63.158 13.86 0.00 0.00 4.63
3372 3977 1.689273 CTAGGTGCATGTACTCCCTCC 59.311 57.143 13.86 0.00 0.00 4.30
3373 3978 1.069358 GCTAGGTGCATGTACTCCCTC 59.931 57.143 13.86 0.00 42.31 4.30
3374 3979 1.123928 GCTAGGTGCATGTACTCCCT 58.876 55.000 13.86 5.34 42.31 4.20
3375 3980 1.123928 AGCTAGGTGCATGTACTCCC 58.876 55.000 13.86 0.00 45.94 4.30
3376 3981 2.959707 AGTAGCTAGGTGCATGTACTCC 59.040 50.000 13.86 0.00 45.94 3.85
3377 3982 4.142138 ACAAGTAGCTAGGTGCATGTACTC 60.142 45.833 17.32 4.28 45.94 2.59
3378 3983 3.769844 ACAAGTAGCTAGGTGCATGTACT 59.230 43.478 17.32 3.28 45.94 2.73
3379 3984 4.124851 ACAAGTAGCTAGGTGCATGTAC 57.875 45.455 17.32 5.22 45.94 2.90
3439 4044 2.434702 GAGATCCACTGGGTATTTCCGT 59.565 50.000 0.00 0.00 37.00 4.69
3455 4060 2.528134 TCCATTGGGACCCGAGATC 58.472 57.895 6.61 0.00 38.64 2.75
3456 4061 4.829388 TCCATTGGGACCCGAGAT 57.171 55.556 6.61 0.00 38.64 2.75
3498 4103 7.169813 GCAGGAATTTTCGACTCTTTGAATTTT 59.830 33.333 0.00 0.00 0.00 1.82
3500 4105 6.152379 GCAGGAATTTTCGACTCTTTGAATT 58.848 36.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.