Multiple sequence alignment - TraesCS5A01G292400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G292400 chr5A 100.000 3947 0 0 504 4450 502580344 502584290 0.000000e+00 7289.0
1 TraesCS5A01G292400 chr5A 100.000 329 0 0 1 329 502579841 502580169 3.810000e-170 608.0
2 TraesCS5A01G292400 chr5A 94.828 174 1 5 2667 2834 457431848 457431677 9.490000e-67 265.0
3 TraesCS5A01G292400 chr5A 94.318 176 2 5 2667 2836 219578901 219579074 3.410000e-66 263.0
4 TraesCS5A01G292400 chr5A 95.918 98 3 1 842 938 702637727 702637630 1.660000e-34 158.0
5 TraesCS5A01G292400 chr5D 92.268 1914 108 15 1756 3663 397027925 397029804 0.000000e+00 2678.0
6 TraesCS5A01G292400 chr5D 89.645 1014 83 13 737 1746 397026887 397027882 0.000000e+00 1271.0
7 TraesCS5A01G292400 chr5D 80.213 470 48 17 3828 4293 397030588 397031016 1.200000e-80 311.0
8 TraesCS5A01G292400 chr5D 86.434 258 32 1 525 779 397026570 397026827 3.390000e-71 279.0
9 TraesCS5A01G292400 chr5D 100.000 28 0 0 4011 4038 397030687 397030714 8.000000e-03 52.8
10 TraesCS5A01G292400 chr5B 86.732 1025 93 28 737 1746 477422733 477423729 0.000000e+00 1099.0
11 TraesCS5A01G292400 chr5B 79.734 903 104 42 1756 2626 477423772 477424627 8.300000e-162 580.0
12 TraesCS5A01G292400 chr5B 81.004 558 77 18 2852 3398 477424678 477425217 2.480000e-112 416.0
13 TraesCS5A01G292400 chr5B 86.312 263 28 6 523 779 477422421 477422681 3.390000e-71 279.0
14 TraesCS5A01G292400 chr7D 95.973 298 12 0 32 329 34979441 34979738 6.690000e-133 484.0
15 TraesCS5A01G292400 chrUn 95.973 298 9 1 32 329 134273772 134274066 8.660000e-132 481.0
16 TraesCS5A01G292400 chr7B 95.286 297 14 0 32 328 328490466 328490170 5.210000e-129 472.0
17 TraesCS5A01G292400 chr7B 92.670 191 6 5 2667 2850 220990624 220990813 7.340000e-68 268.0
18 TraesCS5A01G292400 chr7B 93.443 183 3 6 2667 2842 134048620 134048440 3.410000e-66 263.0
19 TraesCS5A01G292400 chr1D 95.270 296 14 0 32 327 15676701 15676996 1.870000e-128 470.0
20 TraesCS5A01G292400 chr6D 94.966 298 15 0 32 329 37450955 37451252 6.740000e-128 468.0
21 TraesCS5A01G292400 chr1B 94.631 298 16 0 32 329 550750747 550751044 3.140000e-126 462.0
22 TraesCS5A01G292400 chr1B 89.076 119 9 4 814 929 63085193 63085076 1.290000e-30 145.0
23 TraesCS5A01G292400 chr7A 94.631 298 15 1 32 329 191175816 191175520 1.130000e-125 460.0
24 TraesCS5A01G292400 chr7A 94.295 298 17 0 32 329 210690553 210690256 1.460000e-124 457.0
25 TraesCS5A01G292400 chr7A 92.513 187 5 5 2667 2847 721921154 721920971 4.420000e-65 259.0
26 TraesCS5A01G292400 chr6B 94.295 298 17 0 32 329 653216860 653216563 1.460000e-124 457.0
27 TraesCS5A01G292400 chr6A 94.737 228 10 2 71 298 370605109 370604884 1.970000e-93 353.0
28 TraesCS5A01G292400 chr4A 95.294 170 1 4 2666 2829 564649500 564649668 3.410000e-66 263.0
29 TraesCS5A01G292400 chr2B 94.798 173 1 5 2667 2833 244915602 244915772 3.410000e-66 263.0
30 TraesCS5A01G292400 chr2B 94.059 101 2 2 834 934 183651710 183651614 2.770000e-32 150.0
31 TraesCS5A01G292400 chr2A 93.855 179 2 6 2667 2838 706218315 706218139 1.230000e-65 261.0
32 TraesCS5A01G292400 chr2D 100.000 88 0 0 851 938 371161172 371161085 3.560000e-36 163.0
33 TraesCS5A01G292400 chr4D 96.000 100 2 2 846 945 482238094 482238191 1.280000e-35 161.0
34 TraesCS5A01G292400 chr4D 94.898 98 4 1 838 934 506899225 506899322 7.710000e-33 152.0
35 TraesCS5A01G292400 chr4B 97.826 92 1 1 846 937 612029770 612029860 1.660000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G292400 chr5A 502579841 502584290 4449 False 3948.50 7289 100.0000 1 4450 2 chr5A.!!$F2 4449
1 TraesCS5A01G292400 chr5D 397026570 397031016 4446 False 918.36 2678 89.7120 525 4293 5 chr5D.!!$F1 3768
2 TraesCS5A01G292400 chr5B 477422421 477425217 2796 False 593.50 1099 83.4455 523 3398 4 chr5B.!!$F1 2875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.043485 GAGGAGGGGAAGGGAGAGTT 59.957 60.0 0.00 0.0 0.00 3.01 F
275 276 0.252927 AGGAGGGGAAGGGAGAGTTG 60.253 60.0 0.00 0.0 0.00 3.16 F
1471 1618 0.255890 GATACTTCAGCCAGGGCCAA 59.744 55.0 6.18 0.0 43.17 4.52 F
2788 3002 0.269782 TATAACCCCTCCCAGACCCC 59.730 60.0 0.00 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1992 0.555769 ACCAAGCCCCTCTCACAAAA 59.444 50.000 0.00 0.0 0.0 2.44 R
1816 1996 1.303643 CCAACCAAGCCCCTCTCAC 60.304 63.158 0.00 0.0 0.0 3.51 R
3309 3536 0.450184 ACACTTTGCACAACACCGTC 59.550 50.000 0.00 0.0 0.0 4.79 R
4186 5036 0.033601 TCATTATGCCGGGCCTTGTT 60.034 50.000 17.97 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.220658 TGTGTCACGAGCGGACCA 61.221 61.111 0.00 4.79 34.36 4.02
18 19 2.430921 GTGTCACGAGCGGACCAG 60.431 66.667 0.00 0.00 34.36 4.00
19 20 2.596338 TGTCACGAGCGGACCAGA 60.596 61.111 0.00 0.00 34.36 3.86
20 21 2.197605 TGTCACGAGCGGACCAGAA 61.198 57.895 0.00 0.00 34.36 3.02
21 22 1.733399 GTCACGAGCGGACCAGAAC 60.733 63.158 0.00 0.00 0.00 3.01
22 23 2.197605 TCACGAGCGGACCAGAACA 61.198 57.895 0.00 0.00 0.00 3.18
23 24 2.022129 CACGAGCGGACCAGAACAC 61.022 63.158 0.00 0.00 0.00 3.32
24 25 2.432628 CGAGCGGACCAGAACACC 60.433 66.667 0.00 0.00 0.00 4.16
25 26 2.932234 CGAGCGGACCAGAACACCT 61.932 63.158 0.00 0.00 0.00 4.00
26 27 1.079750 GAGCGGACCAGAACACCTC 60.080 63.158 0.00 0.00 0.00 3.85
27 28 1.816863 GAGCGGACCAGAACACCTCA 61.817 60.000 0.00 0.00 0.00 3.86
28 29 1.374758 GCGGACCAGAACACCTCAG 60.375 63.158 0.00 0.00 0.00 3.35
29 30 1.816863 GCGGACCAGAACACCTCAGA 61.817 60.000 0.00 0.00 0.00 3.27
30 31 0.898320 CGGACCAGAACACCTCAGAT 59.102 55.000 0.00 0.00 0.00 2.90
31 32 1.134965 CGGACCAGAACACCTCAGATC 60.135 57.143 0.00 0.00 0.00 2.75
32 33 1.208293 GGACCAGAACACCTCAGATCC 59.792 57.143 0.00 0.00 0.00 3.36
33 34 1.902508 GACCAGAACACCTCAGATCCA 59.097 52.381 0.00 0.00 0.00 3.41
34 35 1.625818 ACCAGAACACCTCAGATCCAC 59.374 52.381 0.00 0.00 0.00 4.02
35 36 1.404717 CCAGAACACCTCAGATCCACG 60.405 57.143 0.00 0.00 0.00 4.94
36 37 1.546029 CAGAACACCTCAGATCCACGA 59.454 52.381 0.00 0.00 0.00 4.35
37 38 1.546476 AGAACACCTCAGATCCACGAC 59.454 52.381 0.00 0.00 0.00 4.34
38 39 0.608640 AACACCTCAGATCCACGACC 59.391 55.000 0.00 0.00 0.00 4.79
39 40 0.541998 ACACCTCAGATCCACGACCA 60.542 55.000 0.00 0.00 0.00 4.02
40 41 0.174389 CACCTCAGATCCACGACCAG 59.826 60.000 0.00 0.00 0.00 4.00
41 42 1.142748 CCTCAGATCCACGACCAGC 59.857 63.158 0.00 0.00 0.00 4.85
43 44 2.887568 CAGATCCACGACCAGCGC 60.888 66.667 0.00 0.00 46.04 5.92
44 45 4.148825 AGATCCACGACCAGCGCC 62.149 66.667 2.29 0.00 46.04 6.53
93 94 4.717313 GGACCCGGCCAACCTCAC 62.717 72.222 2.24 0.00 0.00 3.51
94 95 4.717313 GACCCGGCCAACCTCACC 62.717 72.222 2.24 0.00 0.00 4.02
99 100 3.998672 GGCCAACCTCACCGACGA 61.999 66.667 0.00 0.00 0.00 4.20
100 101 2.432628 GCCAACCTCACCGACGAG 60.433 66.667 0.00 0.00 0.00 4.18
101 102 2.432628 CCAACCTCACCGACGAGC 60.433 66.667 0.00 0.00 0.00 5.03
102 103 2.338620 CAACCTCACCGACGAGCA 59.661 61.111 0.00 0.00 0.00 4.26
103 104 2.022129 CAACCTCACCGACGAGCAC 61.022 63.158 0.00 0.00 0.00 4.40
104 105 2.201022 AACCTCACCGACGAGCACT 61.201 57.895 0.00 0.00 0.00 4.40
105 106 2.143594 AACCTCACCGACGAGCACTC 62.144 60.000 0.00 0.00 0.00 3.51
106 107 2.179517 CTCACCGACGAGCACTCC 59.820 66.667 0.00 0.00 0.00 3.85
107 108 3.343788 CTCACCGACGAGCACTCCC 62.344 68.421 0.00 0.00 0.00 4.30
108 109 4.436998 CACCGACGAGCACTCCCC 62.437 72.222 0.00 0.00 0.00 4.81
165 166 3.237741 CCTCAGATCCGGGCCCTC 61.238 72.222 22.43 11.27 0.00 4.30
166 167 2.444706 CTCAGATCCGGGCCCTCA 60.445 66.667 22.43 6.02 0.00 3.86
167 168 2.764128 TCAGATCCGGGCCCTCAC 60.764 66.667 22.43 8.62 0.00 3.51
168 169 3.866582 CAGATCCGGGCCCTCACC 61.867 72.222 22.43 6.61 0.00 4.02
169 170 4.414956 AGATCCGGGCCCTCACCA 62.415 66.667 22.43 0.00 0.00 4.17
170 171 4.176752 GATCCGGGCCCTCACCAC 62.177 72.222 22.43 2.36 0.00 4.16
175 176 3.961414 GGGCCCTCACCACCGAAA 61.961 66.667 17.04 0.00 0.00 3.46
176 177 2.359975 GGCCCTCACCACCGAAAG 60.360 66.667 0.00 0.00 0.00 2.62
188 189 2.047274 CGAAAGGAAGCGGCCAGA 60.047 61.111 2.24 0.00 0.00 3.86
189 190 2.103042 CGAAAGGAAGCGGCCAGAG 61.103 63.158 2.24 0.00 0.00 3.35
190 191 1.746991 GAAAGGAAGCGGCCAGAGG 60.747 63.158 2.24 0.00 0.00 3.69
266 267 3.157949 GGCGAGGAGGAGGGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
267 268 3.157949 GCGAGGAGGAGGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
268 269 2.444895 CGAGGAGGAGGGGAAGGG 60.445 72.222 0.00 0.00 0.00 3.95
269 270 3.010226 CGAGGAGGAGGGGAAGGGA 62.010 68.421 0.00 0.00 0.00 4.20
270 271 1.074850 GAGGAGGAGGGGAAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
271 272 1.550374 AGGAGGAGGGGAAGGGAGA 60.550 63.158 0.00 0.00 0.00 3.71
272 273 1.074850 GGAGGAGGGGAAGGGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
273 274 1.707200 GAGGAGGGGAAGGGAGAGT 59.293 63.158 0.00 0.00 0.00 3.24
274 275 0.043485 GAGGAGGGGAAGGGAGAGTT 59.957 60.000 0.00 0.00 0.00 3.01
275 276 0.252927 AGGAGGGGAAGGGAGAGTTG 60.253 60.000 0.00 0.00 0.00 3.16
276 277 1.275421 GGAGGGGAAGGGAGAGTTGG 61.275 65.000 0.00 0.00 0.00 3.77
277 278 1.916206 GAGGGGAAGGGAGAGTTGGC 61.916 65.000 0.00 0.00 0.00 4.52
278 279 2.269241 GGGAAGGGAGAGTTGGCG 59.731 66.667 0.00 0.00 0.00 5.69
279 280 2.269241 GGAAGGGAGAGTTGGCGG 59.731 66.667 0.00 0.00 0.00 6.13
280 281 2.436824 GAAGGGAGAGTTGGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
281 282 4.394712 AAGGGAGAGTTGGCGGCG 62.395 66.667 0.51 0.51 0.00 6.46
294 295 3.602677 CGGCGCGAGGGAATCCTA 61.603 66.667 12.10 0.00 45.05 2.94
295 296 2.340443 GGCGCGAGGGAATCCTAG 59.660 66.667 12.10 0.00 45.05 3.02
296 297 2.340443 GCGCGAGGGAATCCTAGG 59.660 66.667 12.10 0.82 45.05 3.02
297 298 2.499827 GCGCGAGGGAATCCTAGGT 61.500 63.158 12.10 0.00 45.05 3.08
298 299 1.660917 CGCGAGGGAATCCTAGGTC 59.339 63.158 9.08 0.00 45.05 3.85
299 300 1.660917 GCGAGGGAATCCTAGGTCG 59.339 63.158 9.08 10.66 45.05 4.79
300 301 1.660917 CGAGGGAATCCTAGGTCGC 59.339 63.158 9.08 8.47 45.05 5.19
301 302 1.807495 CGAGGGAATCCTAGGTCGCC 61.807 65.000 9.08 8.24 45.05 5.54
302 303 1.459730 AGGGAATCCTAGGTCGCCC 60.460 63.158 20.90 20.90 42.75 6.13
303 304 2.517798 GGGAATCCTAGGTCGCCCC 61.518 68.421 18.92 15.95 0.00 5.80
304 305 2.517798 GGAATCCTAGGTCGCCCCC 61.518 68.421 9.08 0.00 0.00 5.40
305 306 1.764854 GAATCCTAGGTCGCCCCCA 60.765 63.158 9.08 0.00 0.00 4.96
306 307 1.307517 AATCCTAGGTCGCCCCCAA 60.308 57.895 9.08 0.00 0.00 4.12
307 308 1.345715 AATCCTAGGTCGCCCCCAAG 61.346 60.000 9.08 0.00 0.00 3.61
308 309 2.547123 ATCCTAGGTCGCCCCCAAGT 62.547 60.000 9.08 0.00 0.00 3.16
309 310 2.732619 CCTAGGTCGCCCCCAAGTC 61.733 68.421 0.00 0.00 0.00 3.01
310 311 3.072468 TAGGTCGCCCCCAAGTCG 61.072 66.667 0.00 0.00 0.00 4.18
320 321 4.148825 CCAAGTCGCCCTCGGGAG 62.149 72.222 6.08 2.12 37.50 4.30
321 322 3.068691 CAAGTCGCCCTCGGGAGA 61.069 66.667 6.08 5.06 41.69 3.71
544 545 8.463930 TCTTTTCATGTGATAAAAGACCAAGT 57.536 30.769 13.28 0.00 43.34 3.16
550 551 8.590204 TCATGTGATAAAAGACCAAGTAGTACA 58.410 33.333 2.52 0.00 0.00 2.90
585 586 4.037327 GGAAAGCCCTCAAGCTCATTTATC 59.963 45.833 0.00 0.00 44.11 1.75
599 600 6.267014 AGCTCATTTATCCATTCCCAATGAAG 59.733 38.462 0.00 0.00 41.46 3.02
602 603 7.590907 TCATTTATCCATTCCCAATGAAGGTA 58.409 34.615 0.00 0.00 41.46 3.08
632 633 7.218963 CGTTTATAAGAGCATTCAAAAGGAAGC 59.781 37.037 0.00 0.00 39.30 3.86
633 634 3.949842 AAGAGCATTCAAAAGGAAGCC 57.050 42.857 0.00 0.00 39.30 4.35
656 661 2.777692 AGGGGTTCATCGACCATACAAT 59.222 45.455 0.00 0.00 41.65 2.71
660 665 4.398044 GGGTTCATCGACCATACAATGTTT 59.602 41.667 0.00 0.00 41.65 2.83
661 666 5.331902 GGTTCATCGACCATACAATGTTTG 58.668 41.667 0.00 0.00 39.57 2.93
717 723 7.007725 GTGAGACATGCAATATTTTTGAACGAG 59.992 37.037 0.00 0.00 0.00 4.18
721 727 6.305399 ACATGCAATATTTTTGAACGAGAACG 59.695 34.615 0.00 0.00 45.75 3.95
725 731 6.523201 GCAATATTTTTGAACGAGAACGACAT 59.477 34.615 0.00 0.00 42.66 3.06
753 759 5.281693 GGCAACAAAAATAGTTTGGATGC 57.718 39.130 14.76 14.76 41.42 3.91
757 763 7.361894 GCAACAAAAATAGTTTGGATGCAAAT 58.638 30.769 17.31 7.59 41.59 2.32
774 780 4.944930 TGCAAATGACATCTCATGTGATGA 59.055 37.500 33.41 18.88 42.82 2.92
779 785 6.679327 ATGACATCTCATGTGATGACAAAG 57.321 37.500 33.41 14.33 46.02 2.77
780 786 5.797051 TGACATCTCATGTGATGACAAAGA 58.203 37.500 33.41 15.64 45.03 2.52
781 787 6.232692 TGACATCTCATGTGATGACAAAGAA 58.767 36.000 33.41 15.35 45.03 2.52
824 936 3.228188 TCTGAAGTGATGGCAAAAGGT 57.772 42.857 0.00 0.00 0.00 3.50
830 942 6.045955 TGAAGTGATGGCAAAAGGTAAAAAC 58.954 36.000 0.00 0.00 0.00 2.43
832 944 5.600696 AGTGATGGCAAAAGGTAAAAACTG 58.399 37.500 0.00 0.00 0.00 3.16
834 946 6.045955 GTGATGGCAAAAGGTAAAAACTGAA 58.954 36.000 0.00 0.00 0.00 3.02
945 1070 2.545742 CCAGCTTTGTTGGTTAGTTGCC 60.546 50.000 0.00 0.00 0.00 4.52
963 1088 7.486802 AGTTGCCGTGGTAAACATTATATAC 57.513 36.000 8.61 0.00 0.00 1.47
965 1090 5.307204 TGCCGTGGTAAACATTATATACCC 58.693 41.667 0.00 0.00 38.64 3.69
966 1091 5.072058 TGCCGTGGTAAACATTATATACCCT 59.928 40.000 0.00 0.00 38.64 4.34
971 1096 9.985730 CGTGGTAAACATTATATACCCTTAGAA 57.014 33.333 0.00 0.00 38.64 2.10
1001 1138 2.943978 CGGAAGGAAGTCGCTGGGT 61.944 63.158 0.00 0.00 0.00 4.51
1039 1176 1.344942 CGGTTTGCTTCTCGTCTCGG 61.345 60.000 0.00 0.00 0.00 4.63
1094 1231 4.201679 CGCCCGCCGTAGATCACA 62.202 66.667 0.00 0.00 0.00 3.58
1110 1247 2.536066 TCACAAGGAGAAAGGGATCGA 58.464 47.619 0.00 0.00 0.00 3.59
1112 1249 1.555533 ACAAGGAGAAAGGGATCGACC 59.444 52.381 0.00 0.00 38.08 4.79
1146 1283 0.878416 GCCGAGAGACGATGAGCTAT 59.122 55.000 0.00 0.00 45.77 2.97
1238 1385 3.966543 CCCCAAACCCTCCGTGCT 61.967 66.667 0.00 0.00 0.00 4.40
1239 1386 2.115266 CCCAAACCCTCCGTGCTT 59.885 61.111 0.00 0.00 0.00 3.91
1240 1387 1.971695 CCCAAACCCTCCGTGCTTC 60.972 63.158 0.00 0.00 0.00 3.86
1241 1388 1.971695 CCAAACCCTCCGTGCTTCC 60.972 63.158 0.00 0.00 0.00 3.46
1242 1389 1.971695 CAAACCCTCCGTGCTTCCC 60.972 63.158 0.00 0.00 0.00 3.97
1243 1390 3.205851 AAACCCTCCGTGCTTCCCC 62.206 63.158 0.00 0.00 0.00 4.81
1267 1414 4.314440 TCGGCACCGAAGCAGCTT 62.314 61.111 7.60 7.60 46.01 3.74
1270 1417 1.081175 GGCACCGAAGCAGCTTTTC 60.081 57.895 9.62 0.00 35.83 2.29
1271 1418 1.518903 GGCACCGAAGCAGCTTTTCT 61.519 55.000 9.62 0.00 35.83 2.52
1273 1420 1.517242 CACCGAAGCAGCTTTTCTCT 58.483 50.000 9.62 0.00 0.00 3.10
1287 1434 1.040646 TTCTCTCGATCGATTGGGGG 58.959 55.000 19.78 9.56 0.00 5.40
1329 1476 0.986527 TGCCATGGTCTGATCTGTGT 59.013 50.000 14.67 0.00 0.00 3.72
1347 1494 3.587933 TTTTTGTTCCGCGCGGCT 61.588 55.556 42.78 0.00 34.68 5.52
1471 1618 0.255890 GATACTTCAGCCAGGGCCAA 59.744 55.000 6.18 0.00 43.17 4.52
1585 1732 2.990967 CACCACCACCACCATGGC 60.991 66.667 13.04 0.00 44.33 4.40
1655 1802 7.093945 GCTTCCTCAAAGGATGGTAATGTTAAA 60.094 37.037 10.01 0.00 45.34 1.52
1685 1832 6.393990 GCCTTCTCTCGACATGTATTATGAT 58.606 40.000 0.00 0.00 0.00 2.45
1704 1851 4.849518 TGATTTTGGGGTATGTGATTCGA 58.150 39.130 0.00 0.00 0.00 3.71
1706 1853 5.124776 TGATTTTGGGGTATGTGATTCGAAC 59.875 40.000 0.00 0.00 0.00 3.95
1707 1854 3.704800 TTGGGGTATGTGATTCGAACA 57.295 42.857 0.00 0.00 0.00 3.18
1709 1856 3.804036 TGGGGTATGTGATTCGAACATC 58.196 45.455 0.00 0.00 39.05 3.06
1715 1862 6.481976 GGGTATGTGATTCGAACATCATGTTA 59.518 38.462 2.04 0.00 41.28 2.41
1716 1863 7.173218 GGGTATGTGATTCGAACATCATGTTAT 59.827 37.037 2.04 0.00 41.28 1.89
1746 1893 8.200792 TGGTTAATTTCTTGTTTACATTGCACT 58.799 29.630 0.00 0.00 0.00 4.40
1747 1894 8.487176 GGTTAATTTCTTGTTTACATTGCACTG 58.513 33.333 1.95 1.95 0.00 3.66
1748 1895 9.030301 GTTAATTTCTTGTTTACATTGCACTGT 57.970 29.630 14.59 14.59 0.00 3.55
1750 1897 6.884096 TTTCTTGTTTACATTGCACTGTTG 57.116 33.333 15.41 0.00 0.00 3.33
1752 1899 5.820131 TCTTGTTTACATTGCACTGTTGAG 58.180 37.500 15.41 6.78 0.00 3.02
1753 1900 5.588246 TCTTGTTTACATTGCACTGTTGAGA 59.412 36.000 15.41 8.74 0.00 3.27
1773 1953 8.890718 GTTGAGATTTGAGAATTGAGATCATCA 58.109 33.333 0.00 0.00 35.62 3.07
1788 1968 6.988580 TGAGATCATCAGGTTATGCTTAGTTG 59.011 38.462 0.00 0.00 32.77 3.16
1793 1973 6.595326 TCATCAGGTTATGCTTAGTTGTTCTG 59.405 38.462 0.00 0.00 0.00 3.02
1810 1990 1.827969 TCTGGAGCTAGCTCTTTGGTC 59.172 52.381 36.76 22.82 42.38 4.02
1812 1992 2.235898 CTGGAGCTAGCTCTTTGGTCTT 59.764 50.000 36.76 5.05 42.38 3.01
1816 1996 4.083057 GGAGCTAGCTCTTTGGTCTTTTTG 60.083 45.833 36.76 0.00 42.38 2.44
1938 2119 5.801947 GTGCTGGCTGAATTTGTGTAATAAG 59.198 40.000 0.00 0.00 0.00 1.73
1986 2168 9.753669 CCTAAACAAAAACTTCACAATGAAAAC 57.246 29.630 0.00 0.00 35.73 2.43
2009 2191 8.770010 AACTCTTGTATCTACTAGCACCTAAT 57.230 34.615 0.00 0.00 0.00 1.73
2010 2192 9.863650 AACTCTTGTATCTACTAGCACCTAATA 57.136 33.333 0.00 0.00 0.00 0.98
2144 2335 0.535797 GTAGCAGGAGCCCGTAAAGT 59.464 55.000 0.00 0.00 43.56 2.66
2247 2438 5.771469 CACATCTTTGGAACACTGCATTTA 58.229 37.500 0.00 0.00 39.29 1.40
2248 2439 6.392354 CACATCTTTGGAACACTGCATTTAT 58.608 36.000 0.00 0.00 39.29 1.40
2249 2440 6.869913 CACATCTTTGGAACACTGCATTTATT 59.130 34.615 0.00 0.00 39.29 1.40
2363 2555 3.950794 TTGGCCTTAGACAGCGGCG 62.951 63.158 3.32 0.51 44.68 6.46
2594 2804 4.321750 CCTGTGGACTAGCGAAGAGTTTTA 60.322 45.833 0.00 0.00 0.00 1.52
2674 2884 1.146263 GTAATCACCCGAGGGCAGG 59.854 63.158 8.33 0.00 39.32 4.85
2675 2885 2.742116 TAATCACCCGAGGGCAGGC 61.742 63.158 8.33 0.00 39.32 4.85
2692 2902 2.675056 GCTCTGCGCAGTGGTGAAG 61.675 63.158 34.70 24.34 38.92 3.02
2707 2917 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
2714 2924 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
2726 2936 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2782 2996 1.660430 AGGTTCCTATAACCCCTCCCA 59.340 52.381 3.33 0.00 41.18 4.37
2783 2997 2.055579 GGTTCCTATAACCCCTCCCAG 58.944 57.143 0.00 0.00 34.26 4.45
2784 2998 2.361070 GGTTCCTATAACCCCTCCCAGA 60.361 54.545 0.00 0.00 34.26 3.86
2785 2999 2.704596 GTTCCTATAACCCCTCCCAGAC 59.295 54.545 0.00 0.00 0.00 3.51
2786 3000 1.222298 TCCTATAACCCCTCCCAGACC 59.778 57.143 0.00 0.00 0.00 3.85
2787 3001 1.730851 CTATAACCCCTCCCAGACCC 58.269 60.000 0.00 0.00 0.00 4.46
2788 3002 0.269782 TATAACCCCTCCCAGACCCC 59.730 60.000 0.00 0.00 0.00 4.95
2789 3003 1.844296 ATAACCCCTCCCAGACCCCA 61.844 60.000 0.00 0.00 0.00 4.96
2790 3004 2.776053 TAACCCCTCCCAGACCCCAC 62.776 65.000 0.00 0.00 0.00 4.61
2792 3006 4.354943 CCCTCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
2793 3007 2.204151 CCTCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
2794 3008 2.606587 CCTCCCAGACCCCACCTTG 61.607 68.421 0.00 0.00 0.00 3.61
2795 3009 1.847968 CTCCCAGACCCCACCTTGT 60.848 63.158 0.00 0.00 0.00 3.16
2796 3010 2.129555 CTCCCAGACCCCACCTTGTG 62.130 65.000 0.00 0.00 0.00 3.33
2829 3043 1.239347 GCACTGGGTCTGTCCTTTTC 58.761 55.000 0.00 0.00 36.25 2.29
2835 3049 4.256920 CTGGGTCTGTCCTTTTCTATGTG 58.743 47.826 0.00 0.00 36.25 3.21
2837 3051 4.020218 TGGGTCTGTCCTTTTCTATGTGAG 60.020 45.833 0.00 0.00 36.25 3.51
2845 3059 6.056236 GTCCTTTTCTATGTGAGGTAATCCC 58.944 44.000 0.00 0.00 0.00 3.85
2924 3140 5.263968 ACCGGAGTGTCAATTCATACTAG 57.736 43.478 9.46 0.00 0.00 2.57
2980 3200 9.863845 TTTGTTCGACAAAGATGTGTATAGATA 57.136 29.630 8.47 0.00 42.55 1.98
2983 3203 6.665465 TCGACAAAGATGTGTATAGATACCG 58.335 40.000 0.00 0.00 40.74 4.02
2984 3204 5.856986 CGACAAAGATGTGTATAGATACCGG 59.143 44.000 0.00 0.00 40.74 5.28
2986 3206 6.982852 ACAAAGATGTGTATAGATACCGGAG 58.017 40.000 9.46 0.00 38.69 4.63
2987 3207 6.550108 ACAAAGATGTGTATAGATACCGGAGT 59.450 38.462 9.46 0.00 38.69 3.85
2988 3208 6.576662 AAGATGTGTATAGATACCGGAGTG 57.423 41.667 9.46 0.00 32.33 3.51
2996 3216 2.747177 AGATACCGGAGTGTCAATGGA 58.253 47.619 9.46 0.00 36.63 3.41
3018 3238 5.292589 GGATGAAGCATTTTATTGCACAAGG 59.707 40.000 0.00 0.00 45.23 3.61
3037 3260 2.314549 AGGCCCCTGGTATTTTCATTCA 59.685 45.455 0.00 0.00 0.00 2.57
3062 3285 8.658609 CAATTTTCCTGTTTTCATCGCATTAAT 58.341 29.630 0.00 0.00 0.00 1.40
3234 3461 5.817296 TCTGGCTTGTTATTATGTGTAGCTG 59.183 40.000 0.00 0.00 0.00 4.24
3242 3469 8.347729 TGTTATTATGTGTAGCTGTATGAACG 57.652 34.615 0.00 0.00 0.00 3.95
3294 3521 5.804979 GTGTTTACATTGTTTGCTGAACTGT 59.195 36.000 0.00 5.00 39.08 3.55
3354 3581 6.016777 ACATGATCCAGACTTGACTGTTTTTC 60.017 38.462 0.00 0.00 36.30 2.29
3358 3585 6.377327 TCCAGACTTGACTGTTTTTCATTC 57.623 37.500 0.00 0.00 36.30 2.67
3408 3635 3.243334 TGCTCGTAGATGCAGATCTGAAG 60.243 47.826 27.04 7.39 39.44 3.02
3409 3636 3.856638 GCTCGTAGATGCAGATCTGAAGG 60.857 52.174 27.04 10.49 39.44 3.46
3410 3637 2.035193 TCGTAGATGCAGATCTGAAGGC 59.965 50.000 27.04 12.24 39.44 4.35
3411 3638 2.035704 CGTAGATGCAGATCTGAAGGCT 59.964 50.000 27.04 18.55 39.44 4.58
3412 3639 3.492309 CGTAGATGCAGATCTGAAGGCTT 60.492 47.826 27.04 8.81 39.44 4.35
3413 3640 2.920524 AGATGCAGATCTGAAGGCTTG 58.079 47.619 27.04 0.00 37.56 4.01
3452 3679 4.141846 ACAGTAACTGATAGGTCATGCTGG 60.142 45.833 0.00 0.00 35.18 4.85
3456 3683 4.408182 ACTGATAGGTCATGCTGGTAAC 57.592 45.455 0.00 0.00 32.98 2.50
3461 3688 5.838521 TGATAGGTCATGCTGGTAACTGATA 59.161 40.000 0.00 0.00 37.83 2.15
3462 3689 6.326323 TGATAGGTCATGCTGGTAACTGATAA 59.674 38.462 0.00 0.00 37.83 1.75
3521 3748 1.485066 TGGCGAATTAGAACTCTCCCC 59.515 52.381 0.00 0.00 0.00 4.81
3544 3771 7.343357 CCCTGACATATTCAAAAGTAGGGTTA 58.657 38.462 0.00 0.00 32.21 2.85
3548 3775 9.444600 TGACATATTCAAAAGTAGGGTTAGAAC 57.555 33.333 0.00 0.00 0.00 3.01
3567 3794 2.783135 ACCCTACACATCAAGCAAGTG 58.217 47.619 0.00 0.00 39.12 3.16
3598 3825 2.038952 ACAGCTGATTACTCTGTGCCAA 59.961 45.455 23.35 0.00 39.36 4.52
3602 3829 1.340017 TGATTACTCTGTGCCAAGGCC 60.340 52.381 8.89 0.00 41.09 5.19
3613 3840 0.888619 GCCAAGGCCCTAGTGTTTTC 59.111 55.000 0.00 0.00 34.56 2.29
3663 3890 3.840666 ACCAACACAGACACTCCTATGAT 59.159 43.478 0.00 0.00 0.00 2.45
3664 3891 4.081420 ACCAACACAGACACTCCTATGATC 60.081 45.833 0.00 0.00 0.00 2.92
3665 3892 4.161189 CCAACACAGACACTCCTATGATCT 59.839 45.833 0.00 0.00 0.00 2.75
3667 3894 6.460814 CCAACACAGACACTCCTATGATCTAG 60.461 46.154 0.00 0.00 0.00 2.43
3668 3895 5.761205 ACACAGACACTCCTATGATCTAGT 58.239 41.667 0.00 0.00 0.00 2.57
3693 4489 7.857885 GTGCATAGATTTCTTAGGAAAAATCCG 59.142 37.037 3.93 0.00 43.51 4.18
3700 4497 5.703730 TCTTAGGAAAAATCCGTATGGGT 57.296 39.130 0.00 0.00 37.00 4.51
3710 4507 6.503560 AAATCCGTATGGGTTGTAATCCTA 57.496 37.500 0.00 0.00 37.72 2.94
3711 4508 5.740290 ATCCGTATGGGTTGTAATCCTAG 57.260 43.478 0.00 0.00 37.00 3.02
3714 4511 4.021368 CCGTATGGGTTGTAATCCTAGAGG 60.021 50.000 0.00 0.00 0.00 3.69
3715 4512 4.587684 CGTATGGGTTGTAATCCTAGAGGT 59.412 45.833 0.00 0.00 36.34 3.85
3716 4513 5.070047 CGTATGGGTTGTAATCCTAGAGGTT 59.930 44.000 0.00 0.00 36.34 3.50
3717 4514 4.837093 TGGGTTGTAATCCTAGAGGTTG 57.163 45.455 0.00 0.00 36.34 3.77
3721 4518 5.045797 GGGTTGTAATCCTAGAGGTTGAACT 60.046 44.000 0.00 0.00 36.34 3.01
3723 4520 7.040494 GGTTGTAATCCTAGAGGTTGAACTAC 58.960 42.308 0.00 0.00 36.34 2.73
3726 4523 2.731572 TCCTAGAGGTTGAACTACCGG 58.268 52.381 0.00 0.00 43.21 5.28
3727 4524 1.136500 CCTAGAGGTTGAACTACCGGC 59.864 57.143 0.00 0.00 43.21 6.13
3744 4541 3.165606 GCTGCTGCCATGACTACTT 57.834 52.632 3.85 0.00 0.00 2.24
3823 4623 8.774890 TTTGTTTACTTTACACACACTAGTCA 57.225 30.769 0.00 0.00 0.00 3.41
3824 4624 7.997107 TGTTTACTTTACACACACTAGTCAG 57.003 36.000 0.00 0.00 0.00 3.51
3825 4625 6.982141 TGTTTACTTTACACACACTAGTCAGG 59.018 38.462 0.00 0.00 0.00 3.86
3826 4626 4.602340 ACTTTACACACACTAGTCAGGG 57.398 45.455 0.00 0.00 0.00 4.45
3827 4627 3.244112 ACTTTACACACACTAGTCAGGGC 60.244 47.826 0.00 0.00 0.00 5.19
3828 4628 2.003937 TACACACACTAGTCAGGGCA 57.996 50.000 0.00 0.00 0.00 5.36
3829 4629 0.681733 ACACACACTAGTCAGGGCAG 59.318 55.000 0.00 0.00 0.00 4.85
3831 4631 1.121407 ACACACTAGTCAGGGCAGCA 61.121 55.000 0.00 0.00 0.00 4.41
3832 4632 0.251354 CACACTAGTCAGGGCAGCAT 59.749 55.000 0.00 0.00 0.00 3.79
3833 4633 0.251354 ACACTAGTCAGGGCAGCATG 59.749 55.000 0.00 0.00 40.87 4.06
3834 4634 0.251354 CACTAGTCAGGGCAGCATGT 59.749 55.000 0.00 0.00 39.31 3.21
3836 4636 1.482593 ACTAGTCAGGGCAGCATGTAC 59.517 52.381 0.00 0.00 39.31 2.90
3960 4806 8.976986 AACTAGAAAGCAATTCAATGAATGTC 57.023 30.769 9.47 4.63 40.72 3.06
4040 4889 8.976986 ACTAGAAAACAATTCAATGAATGCTC 57.023 30.769 9.47 2.78 32.14 4.26
4041 4890 8.579006 ACTAGAAAACAATTCAATGAATGCTCA 58.421 29.630 9.47 0.00 32.14 4.26
4042 4891 9.582431 CTAGAAAACAATTCAATGAATGCTCAT 57.418 29.630 9.47 0.00 44.54 2.90
4050 4899 9.788960 CAATTCAATGAATGCTCATATAGATGG 57.211 33.333 9.47 0.00 41.66 3.51
4051 4900 9.749340 AATTCAATGAATGCTCATATAGATGGA 57.251 29.630 9.47 0.00 41.66 3.41
4053 4902 9.749340 TTCAATGAATGCTCATATAGATGGAAT 57.251 29.630 0.00 0.00 41.66 3.01
4054 4903 9.749340 TCAATGAATGCTCATATAGATGGAATT 57.251 29.630 0.00 0.00 41.66 2.17
4058 4907 9.676861 TGAATGCTCATATAGATGGAATTAAGG 57.323 33.333 0.00 0.00 33.49 2.69
4059 4908 9.896645 GAATGCTCATATAGATGGAATTAAGGA 57.103 33.333 0.00 0.00 33.49 3.36
4060 4909 9.902684 AATGCTCATATAGATGGAATTAAGGAG 57.097 33.333 0.00 0.00 33.49 3.69
4061 4910 8.441311 TGCTCATATAGATGGAATTAAGGAGT 57.559 34.615 0.00 0.00 33.49 3.85
4062 4911 8.884323 TGCTCATATAGATGGAATTAAGGAGTT 58.116 33.333 0.00 0.00 33.49 3.01
4063 4912 9.160496 GCTCATATAGATGGAATTAAGGAGTTG 57.840 37.037 0.00 0.00 33.49 3.16
4066 4915 9.442047 CATATAGATGGAATTAAGGAGTTGACC 57.558 37.037 0.00 0.00 0.00 4.02
4067 4916 5.117406 AGATGGAATTAAGGAGTTGACCC 57.883 43.478 0.00 0.00 0.00 4.46
4068 4917 4.540099 AGATGGAATTAAGGAGTTGACCCA 59.460 41.667 0.00 0.00 0.00 4.51
4079 4928 3.498661 GGAGTTGACCCACTTTCTCCAAT 60.499 47.826 0.00 0.00 40.51 3.16
4094 4943 8.907885 ACTTTCTCCAATTTCATATAAAGGAGC 58.092 33.333 0.00 0.00 40.66 4.70
4095 4944 9.129532 CTTTCTCCAATTTCATATAAAGGAGCT 57.870 33.333 0.00 0.00 40.66 4.09
4100 4949 9.672673 TCCAATTTCATATAAAGGAGCTATAGC 57.327 33.333 17.33 17.33 42.49 2.97
4114 4963 3.988819 GCTATAGCTCTTCACAAGGAGG 58.011 50.000 17.75 0.00 38.21 4.30
4126 4975 0.671781 CAAGGAGGTTGGCGTCTCAG 60.672 60.000 0.00 0.00 31.82 3.35
4127 4976 0.832135 AAGGAGGTTGGCGTCTCAGA 60.832 55.000 0.00 0.00 0.00 3.27
4130 4979 1.433534 GAGGTTGGCGTCTCAGAAAG 58.566 55.000 0.00 0.00 0.00 2.62
4131 4980 0.603975 AGGTTGGCGTCTCAGAAAGC 60.604 55.000 0.00 0.00 0.00 3.51
4135 4984 4.996976 GCGTCTCAGAAAGCCAGA 57.003 55.556 0.00 0.00 0.00 3.86
4137 4986 1.285578 GCGTCTCAGAAAGCCAGATC 58.714 55.000 0.00 0.00 0.00 2.75
4152 5002 2.749076 CCAGATCGTCTCAAATTTGCCA 59.251 45.455 13.54 0.00 0.00 4.92
4159 5009 4.333649 TCGTCTCAAATTTGCCATCAGATC 59.666 41.667 13.54 5.26 0.00 2.75
4171 5021 2.628178 CCATCAGATCGTAGTTAGCCCA 59.372 50.000 0.00 0.00 0.00 5.36
4181 5031 4.022935 TCGTAGTTAGCCCACGTATATTGG 60.023 45.833 0.00 0.00 37.02 3.16
4195 5045 4.457949 CGTATATTGGGATTAACAAGGCCC 59.542 45.833 0.00 0.00 41.08 5.80
4197 5047 0.323908 TTGGGATTAACAAGGCCCGG 60.324 55.000 0.00 0.00 43.70 5.73
4199 5049 1.379309 GGATTAACAAGGCCCGGCA 60.379 57.895 12.58 0.00 0.00 5.69
4204 5054 1.686355 TAACAAGGCCCGGCATAATG 58.314 50.000 12.58 2.66 0.00 1.90
4212 5062 0.883833 CCCGGCATAATGATCAAGGC 59.116 55.000 0.00 0.00 0.00 4.35
4218 5068 3.005155 GGCATAATGATCAAGGCCACTTC 59.995 47.826 16.29 0.00 41.02 3.01
4233 5083 2.341257 CACTTCTCCAGGTGTTCATCG 58.659 52.381 0.00 0.00 0.00 3.84
4253 5103 2.549754 CGTTTGTTCTTGCACTCTCCAT 59.450 45.455 0.00 0.00 0.00 3.41
4254 5104 3.003689 CGTTTGTTCTTGCACTCTCCATT 59.996 43.478 0.00 0.00 0.00 3.16
4255 5105 4.540824 GTTTGTTCTTGCACTCTCCATTC 58.459 43.478 0.00 0.00 0.00 2.67
4256 5106 3.777106 TGTTCTTGCACTCTCCATTCT 57.223 42.857 0.00 0.00 0.00 2.40
4257 5107 3.668447 TGTTCTTGCACTCTCCATTCTC 58.332 45.455 0.00 0.00 0.00 2.87
4258 5108 3.006247 GTTCTTGCACTCTCCATTCTCC 58.994 50.000 0.00 0.00 0.00 3.71
4259 5109 2.259917 TCTTGCACTCTCCATTCTCCA 58.740 47.619 0.00 0.00 0.00 3.86
4286 5136 0.034059 ATCGATGGTTCCGATCAGGC 59.966 55.000 0.00 0.00 42.35 4.85
4297 5147 3.595691 GATCAGGCGATCACGGAAT 57.404 52.632 12.36 0.00 46.33 3.01
4298 5148 1.423395 GATCAGGCGATCACGGAATC 58.577 55.000 12.36 0.00 46.33 2.52
4299 5149 0.034059 ATCAGGCGATCACGGAATCC 59.966 55.000 0.00 0.00 40.15 3.01
4315 5165 4.610945 GGAATCCGAAATTTACTGCATGG 58.389 43.478 0.00 0.00 0.00 3.66
4316 5166 4.097892 GGAATCCGAAATTTACTGCATGGT 59.902 41.667 0.00 0.00 0.00 3.55
4317 5167 4.900635 ATCCGAAATTTACTGCATGGTC 57.099 40.909 0.00 0.00 0.00 4.02
4318 5168 2.675844 TCCGAAATTTACTGCATGGTCG 59.324 45.455 0.00 0.00 0.00 4.79
4319 5169 2.418628 CCGAAATTTACTGCATGGTCGT 59.581 45.455 0.00 0.00 0.00 4.34
4320 5170 3.416277 CGAAATTTACTGCATGGTCGTG 58.584 45.455 0.00 0.00 0.00 4.35
4321 5171 3.120338 CGAAATTTACTGCATGGTCGTGT 60.120 43.478 0.00 0.00 0.00 4.49
4322 5172 4.612712 CGAAATTTACTGCATGGTCGTGTT 60.613 41.667 0.00 0.00 0.00 3.32
4323 5173 4.419522 AATTTACTGCATGGTCGTGTTC 57.580 40.909 0.00 0.00 0.00 3.18
4324 5174 2.535012 TTACTGCATGGTCGTGTTCA 57.465 45.000 0.00 0.00 0.00 3.18
4325 5175 1.790755 TACTGCATGGTCGTGTTCAC 58.209 50.000 0.00 0.00 0.00 3.18
4326 5176 0.179059 ACTGCATGGTCGTGTTCACA 60.179 50.000 0.00 0.00 0.00 3.58
4327 5177 0.943673 CTGCATGGTCGTGTTCACAA 59.056 50.000 0.00 0.00 0.00 3.33
4328 5178 1.333308 CTGCATGGTCGTGTTCACAAA 59.667 47.619 0.00 0.00 0.00 2.83
4329 5179 1.333308 TGCATGGTCGTGTTCACAAAG 59.667 47.619 0.00 0.00 0.00 2.77
4330 5180 1.334960 GCATGGTCGTGTTCACAAAGG 60.335 52.381 0.00 0.00 0.00 3.11
4331 5181 0.951558 ATGGTCGTGTTCACAAAGGC 59.048 50.000 3.87 0.00 0.00 4.35
4332 5182 0.393132 TGGTCGTGTTCACAAAGGCA 60.393 50.000 3.87 0.00 0.00 4.75
4333 5183 0.951558 GGTCGTGTTCACAAAGGCAT 59.048 50.000 3.87 0.00 0.00 4.40
4334 5184 2.147958 GGTCGTGTTCACAAAGGCATA 58.852 47.619 3.87 0.00 0.00 3.14
4335 5185 2.747446 GGTCGTGTTCACAAAGGCATAT 59.253 45.455 3.87 0.00 0.00 1.78
4336 5186 3.426159 GGTCGTGTTCACAAAGGCATATG 60.426 47.826 0.00 0.00 0.00 1.78
4337 5187 2.161410 TCGTGTTCACAAAGGCATATGC 59.839 45.455 19.79 19.79 41.14 3.14
4338 5188 2.162208 CGTGTTCACAAAGGCATATGCT 59.838 45.455 26.12 10.42 41.70 3.79
4339 5189 3.728864 CGTGTTCACAAAGGCATATGCTC 60.729 47.826 26.12 16.37 41.70 4.26
4340 5190 3.441572 GTGTTCACAAAGGCATATGCTCT 59.558 43.478 26.12 18.25 41.70 4.09
4341 5191 4.081406 TGTTCACAAAGGCATATGCTCTT 58.919 39.130 26.12 22.37 41.70 2.85
4342 5192 4.156556 TGTTCACAAAGGCATATGCTCTTC 59.843 41.667 26.12 10.39 41.70 2.87
4343 5193 3.954200 TCACAAAGGCATATGCTCTTCA 58.046 40.909 26.12 10.31 41.70 3.02
4344 5194 4.529897 TCACAAAGGCATATGCTCTTCAT 58.470 39.130 26.12 15.20 41.70 2.57
4345 5195 4.951715 TCACAAAGGCATATGCTCTTCATT 59.048 37.500 26.12 10.67 41.70 2.57
4346 5196 5.066893 TCACAAAGGCATATGCTCTTCATTC 59.933 40.000 26.12 7.85 41.70 2.67
4347 5197 5.067413 CACAAAGGCATATGCTCTTCATTCT 59.933 40.000 26.12 10.03 41.70 2.40
4348 5198 5.655532 ACAAAGGCATATGCTCTTCATTCTT 59.344 36.000 26.12 15.13 41.70 2.52
4349 5199 6.154021 ACAAAGGCATATGCTCTTCATTCTTT 59.846 34.615 26.12 19.46 41.70 2.52
4350 5200 6.388435 AAGGCATATGCTCTTCATTCTTTC 57.612 37.500 26.12 5.71 41.70 2.62
4351 5201 5.692928 AGGCATATGCTCTTCATTCTTTCT 58.307 37.500 26.12 7.92 41.70 2.52
4352 5202 5.531659 AGGCATATGCTCTTCATTCTTTCTG 59.468 40.000 26.12 0.00 41.70 3.02
4353 5203 5.298777 GGCATATGCTCTTCATTCTTTCTGT 59.701 40.000 26.12 0.00 41.70 3.41
4354 5204 6.200100 GCATATGCTCTTCATTCTTTCTGTG 58.800 40.000 20.64 0.00 36.63 3.66
4355 5205 4.698583 ATGCTCTTCATTCTTTCTGTGC 57.301 40.909 0.00 0.00 29.16 4.57
4356 5206 3.479489 TGCTCTTCATTCTTTCTGTGCA 58.521 40.909 0.00 0.00 0.00 4.57
4357 5207 4.077108 TGCTCTTCATTCTTTCTGTGCAT 58.923 39.130 0.00 0.00 0.00 3.96
4358 5208 4.155462 TGCTCTTCATTCTTTCTGTGCATC 59.845 41.667 0.00 0.00 0.00 3.91
4359 5209 4.438472 GCTCTTCATTCTTTCTGTGCATCC 60.438 45.833 0.00 0.00 0.00 3.51
4360 5210 4.654915 TCTTCATTCTTTCTGTGCATCCA 58.345 39.130 0.00 0.00 0.00 3.41
4361 5211 4.456911 TCTTCATTCTTTCTGTGCATCCAC 59.543 41.667 0.00 0.00 42.40 4.02
4375 5225 6.199937 GTGCATCCACAAAATGATTCTACT 57.800 37.500 0.00 0.00 41.67 2.57
4376 5226 6.624423 GTGCATCCACAAAATGATTCTACTT 58.376 36.000 0.00 0.00 41.67 2.24
4377 5227 6.529125 GTGCATCCACAAAATGATTCTACTTG 59.471 38.462 0.00 0.00 41.67 3.16
4378 5228 6.209192 TGCATCCACAAAATGATTCTACTTGT 59.791 34.615 0.00 0.00 0.00 3.16
4379 5229 6.529125 GCATCCACAAAATGATTCTACTTGTG 59.471 38.462 11.55 11.55 44.07 3.33
4380 5230 7.575532 GCATCCACAAAATGATTCTACTTGTGA 60.576 37.037 17.44 7.89 46.22 3.58
4381 5231 8.464404 CATCCACAAAATGATTCTACTTGTGAT 58.536 33.333 17.44 9.29 46.22 3.06
4382 5232 7.819644 TCCACAAAATGATTCTACTTGTGATG 58.180 34.615 17.44 6.32 46.22 3.07
4383 5233 7.665145 TCCACAAAATGATTCTACTTGTGATGA 59.335 33.333 17.44 8.02 46.22 2.92
4384 5234 8.464404 CCACAAAATGATTCTACTTGTGATGAT 58.536 33.333 17.44 0.00 46.22 2.45
4385 5235 9.850628 CACAAAATGATTCTACTTGTGATGATT 57.149 29.630 12.69 0.00 46.22 2.57
4386 5236 9.850628 ACAAAATGATTCTACTTGTGATGATTG 57.149 29.630 0.00 0.00 0.00 2.67
4390 5240 8.975663 ATGATTCTACTTGTGATGATTGATGT 57.024 30.769 0.00 0.00 0.00 3.06
4391 5241 8.797350 TGATTCTACTTGTGATGATTGATGTT 57.203 30.769 0.00 0.00 0.00 2.71
4392 5242 9.234827 TGATTCTACTTGTGATGATTGATGTTT 57.765 29.630 0.00 0.00 0.00 2.83
4393 5243 9.499585 GATTCTACTTGTGATGATTGATGTTTG 57.500 33.333 0.00 0.00 0.00 2.93
4394 5244 8.620116 TTCTACTTGTGATGATTGATGTTTGA 57.380 30.769 0.00 0.00 0.00 2.69
4395 5245 8.797350 TCTACTTGTGATGATTGATGTTTGAT 57.203 30.769 0.00 0.00 0.00 2.57
4396 5246 9.889128 TCTACTTGTGATGATTGATGTTTGATA 57.111 29.630 0.00 0.00 0.00 2.15
4397 5247 9.926751 CTACTTGTGATGATTGATGTTTGATAC 57.073 33.333 0.00 0.00 0.00 2.24
4398 5248 8.571461 ACTTGTGATGATTGATGTTTGATACT 57.429 30.769 0.00 0.00 0.00 2.12
4399 5249 9.017509 ACTTGTGATGATTGATGTTTGATACTT 57.982 29.630 0.00 0.00 0.00 2.24
4400 5250 9.850628 CTTGTGATGATTGATGTTTGATACTTT 57.149 29.630 0.00 0.00 0.00 2.66
4402 5252 9.628746 TGTGATGATTGATGTTTGATACTTTTG 57.371 29.630 0.00 0.00 0.00 2.44
4403 5253 9.844790 GTGATGATTGATGTTTGATACTTTTGA 57.155 29.630 0.00 0.00 0.00 2.69
4404 5254 9.844790 TGATGATTGATGTTTGATACTTTTGAC 57.155 29.630 0.00 0.00 0.00 3.18
4405 5255 9.844790 GATGATTGATGTTTGATACTTTTGACA 57.155 29.630 0.00 0.00 0.00 3.58
4441 5291 9.944376 TTATTGCTTCTAACAATCTGTACTTCT 57.056 29.630 0.00 0.00 38.62 2.85
4442 5292 7.658179 TTGCTTCTAACAATCTGTACTTCTG 57.342 36.000 0.00 0.00 0.00 3.02
4443 5293 5.639506 TGCTTCTAACAATCTGTACTTCTGC 59.360 40.000 0.00 0.00 0.00 4.26
4444 5294 5.064071 GCTTCTAACAATCTGTACTTCTGCC 59.936 44.000 0.00 0.00 0.00 4.85
4445 5295 5.738619 TCTAACAATCTGTACTTCTGCCA 57.261 39.130 0.00 0.00 0.00 4.92
4446 5296 5.479306 TCTAACAATCTGTACTTCTGCCAC 58.521 41.667 0.00 0.00 0.00 5.01
4447 5297 4.357918 AACAATCTGTACTTCTGCCACT 57.642 40.909 0.00 0.00 0.00 4.00
4448 5298 3.668447 ACAATCTGTACTTCTGCCACTG 58.332 45.455 0.00 0.00 0.00 3.66
4449 5299 3.005554 CAATCTGTACTTCTGCCACTGG 58.994 50.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.207547 CTGGTCCGCTCGTGACACA 62.208 63.158 6.37 0.00 34.36 3.72
1 2 2.416244 TTCTGGTCCGCTCGTGACAC 62.416 60.000 0.00 0.00 34.36 3.67
2 3 2.197605 TTCTGGTCCGCTCGTGACA 61.198 57.895 11.07 0.00 34.36 3.58
3 4 1.733399 GTTCTGGTCCGCTCGTGAC 60.733 63.158 0.00 3.44 0.00 3.67
4 5 2.197605 TGTTCTGGTCCGCTCGTGA 61.198 57.895 0.00 0.00 0.00 4.35
5 6 2.022129 GTGTTCTGGTCCGCTCGTG 61.022 63.158 0.00 0.00 0.00 4.35
6 7 2.338984 GTGTTCTGGTCCGCTCGT 59.661 61.111 0.00 0.00 0.00 4.18
7 8 2.432628 GGTGTTCTGGTCCGCTCG 60.433 66.667 0.00 0.00 0.00 5.03
8 9 1.079750 GAGGTGTTCTGGTCCGCTC 60.080 63.158 0.00 0.00 0.00 5.03
9 10 1.821061 CTGAGGTGTTCTGGTCCGCT 61.821 60.000 0.00 0.00 0.00 5.52
10 11 1.374758 CTGAGGTGTTCTGGTCCGC 60.375 63.158 0.00 0.00 0.00 5.54
11 12 0.898320 ATCTGAGGTGTTCTGGTCCG 59.102 55.000 0.00 0.00 0.00 4.79
12 13 1.208293 GGATCTGAGGTGTTCTGGTCC 59.792 57.143 0.00 0.00 44.63 4.46
13 14 1.902508 TGGATCTGAGGTGTTCTGGTC 59.097 52.381 0.00 0.00 34.94 4.02
14 15 1.625818 GTGGATCTGAGGTGTTCTGGT 59.374 52.381 0.00 0.00 0.00 4.00
15 16 1.404717 CGTGGATCTGAGGTGTTCTGG 60.405 57.143 0.00 0.00 0.00 3.86
16 17 1.546029 TCGTGGATCTGAGGTGTTCTG 59.454 52.381 0.00 0.00 0.00 3.02
17 18 1.546476 GTCGTGGATCTGAGGTGTTCT 59.454 52.381 0.00 0.00 0.00 3.01
18 19 1.404315 GGTCGTGGATCTGAGGTGTTC 60.404 57.143 0.00 0.00 0.00 3.18
19 20 0.608640 GGTCGTGGATCTGAGGTGTT 59.391 55.000 0.00 0.00 0.00 3.32
20 21 0.541998 TGGTCGTGGATCTGAGGTGT 60.542 55.000 0.00 0.00 0.00 4.16
21 22 0.174389 CTGGTCGTGGATCTGAGGTG 59.826 60.000 0.00 0.00 0.00 4.00
22 23 1.608717 GCTGGTCGTGGATCTGAGGT 61.609 60.000 0.00 0.00 0.00 3.85
23 24 1.142748 GCTGGTCGTGGATCTGAGG 59.857 63.158 0.00 0.00 0.00 3.86
24 25 1.226802 CGCTGGTCGTGGATCTGAG 60.227 63.158 0.00 0.00 0.00 3.35
25 26 2.885113 CGCTGGTCGTGGATCTGA 59.115 61.111 0.00 0.00 0.00 3.27
26 27 2.887568 GCGCTGGTCGTGGATCTG 60.888 66.667 0.00 0.00 41.07 2.90
27 28 4.148825 GGCGCTGGTCGTGGATCT 62.149 66.667 7.64 0.00 41.07 2.75
76 77 4.717313 GTGAGGTTGGCCGGGTCC 62.717 72.222 2.18 0.00 40.50 4.46
77 78 4.717313 GGTGAGGTTGGCCGGGTC 62.717 72.222 2.18 0.00 40.50 4.46
82 83 3.934391 CTCGTCGGTGAGGTTGGCC 62.934 68.421 0.00 0.00 32.18 5.36
83 84 2.432628 CTCGTCGGTGAGGTTGGC 60.433 66.667 0.00 0.00 32.18 4.52
84 85 2.432628 GCTCGTCGGTGAGGTTGG 60.433 66.667 6.90 0.00 36.47 3.77
85 86 2.022129 GTGCTCGTCGGTGAGGTTG 61.022 63.158 6.90 0.00 36.47 3.77
86 87 2.143594 GAGTGCTCGTCGGTGAGGTT 62.144 60.000 6.90 0.00 36.47 3.50
87 88 2.597805 AGTGCTCGTCGGTGAGGT 60.598 61.111 6.90 0.00 36.47 3.85
88 89 2.179517 GAGTGCTCGTCGGTGAGG 59.820 66.667 6.90 0.00 36.47 3.86
89 90 2.179517 GGAGTGCTCGTCGGTGAG 59.820 66.667 0.00 1.05 39.05 3.51
90 91 3.371063 GGGAGTGCTCGTCGGTGA 61.371 66.667 0.00 0.00 0.00 4.02
91 92 4.436998 GGGGAGTGCTCGTCGGTG 62.437 72.222 0.00 0.00 0.00 4.94
148 149 3.237741 GAGGGCCCGGATCTGAGG 61.238 72.222 18.44 3.88 0.00 3.86
149 150 2.444706 TGAGGGCCCGGATCTGAG 60.445 66.667 18.44 0.00 0.00 3.35
150 151 2.764128 GTGAGGGCCCGGATCTGA 60.764 66.667 18.44 0.00 0.00 3.27
151 152 3.866582 GGTGAGGGCCCGGATCTG 61.867 72.222 18.44 0.00 0.00 2.90
152 153 4.414956 TGGTGAGGGCCCGGATCT 62.415 66.667 18.44 0.00 0.00 2.75
153 154 4.176752 GTGGTGAGGGCCCGGATC 62.177 72.222 18.44 9.69 0.00 3.36
158 159 3.920093 CTTTCGGTGGTGAGGGCCC 62.920 68.421 16.46 16.46 0.00 5.80
159 160 2.359975 CTTTCGGTGGTGAGGGCC 60.360 66.667 0.00 0.00 0.00 5.80
160 161 2.359975 CCTTTCGGTGGTGAGGGC 60.360 66.667 0.00 0.00 0.00 5.19
161 162 0.321653 CTTCCTTTCGGTGGTGAGGG 60.322 60.000 0.00 0.00 0.00 4.30
162 163 0.955919 GCTTCCTTTCGGTGGTGAGG 60.956 60.000 0.00 0.00 0.00 3.86
163 164 1.291877 CGCTTCCTTTCGGTGGTGAG 61.292 60.000 0.00 0.00 0.00 3.51
164 165 1.301401 CGCTTCCTTTCGGTGGTGA 60.301 57.895 0.00 0.00 0.00 4.02
165 166 2.325082 CCGCTTCCTTTCGGTGGTG 61.325 63.158 0.00 0.00 40.72 4.17
166 167 2.032071 CCGCTTCCTTTCGGTGGT 59.968 61.111 0.00 0.00 40.72 4.16
167 168 3.431725 GCCGCTTCCTTTCGGTGG 61.432 66.667 2.58 0.00 46.79 4.61
168 169 3.431725 GGCCGCTTCCTTTCGGTG 61.432 66.667 2.58 0.00 46.79 4.94
169 170 3.901797 CTGGCCGCTTCCTTTCGGT 62.902 63.158 0.00 0.00 46.79 4.69
171 172 2.047274 TCTGGCCGCTTCCTTTCG 60.047 61.111 0.00 0.00 0.00 3.46
172 173 1.746991 CCTCTGGCCGCTTCCTTTC 60.747 63.158 0.00 0.00 0.00 2.62
173 174 2.352805 CCTCTGGCCGCTTCCTTT 59.647 61.111 0.00 0.00 0.00 3.11
174 175 4.416738 GCCTCTGGCCGCTTCCTT 62.417 66.667 0.00 0.00 44.06 3.36
249 250 3.157949 CTTCCCCTCCTCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
250 251 3.157949 CCTTCCCCTCCTCCTCGC 61.158 72.222 0.00 0.00 0.00 5.03
251 252 2.444895 CCCTTCCCCTCCTCCTCG 60.445 72.222 0.00 0.00 0.00 4.63
252 253 1.074850 CTCCCTTCCCCTCCTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
253 254 1.550374 TCTCCCTTCCCCTCCTCCT 60.550 63.158 0.00 0.00 0.00 3.69
254 255 1.074850 CTCTCCCTTCCCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
255 256 0.043485 AACTCTCCCTTCCCCTCCTC 59.957 60.000 0.00 0.00 0.00 3.71
256 257 0.252927 CAACTCTCCCTTCCCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
257 258 1.275421 CCAACTCTCCCTTCCCCTCC 61.275 65.000 0.00 0.00 0.00 4.30
258 259 1.916206 GCCAACTCTCCCTTCCCCTC 61.916 65.000 0.00 0.00 0.00 4.30
259 260 1.925972 GCCAACTCTCCCTTCCCCT 60.926 63.158 0.00 0.00 0.00 4.79
260 261 2.677848 GCCAACTCTCCCTTCCCC 59.322 66.667 0.00 0.00 0.00 4.81
261 262 2.269241 CGCCAACTCTCCCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
262 263 2.269241 CCGCCAACTCTCCCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
263 264 2.436824 GCCGCCAACTCTCCCTTC 60.437 66.667 0.00 0.00 0.00 3.46
264 265 4.394712 CGCCGCCAACTCTCCCTT 62.395 66.667 0.00 0.00 0.00 3.95
277 278 3.559657 CTAGGATTCCCTCGCGCCG 62.560 68.421 0.00 0.00 43.14 6.46
278 279 2.340443 CTAGGATTCCCTCGCGCC 59.660 66.667 0.00 0.00 43.14 6.53
279 280 2.340443 CCTAGGATTCCCTCGCGC 59.660 66.667 1.05 0.00 43.14 6.86
280 281 1.660917 GACCTAGGATTCCCTCGCG 59.339 63.158 17.98 0.00 43.14 5.87
281 282 1.660917 CGACCTAGGATTCCCTCGC 59.339 63.158 17.98 0.00 43.14 5.03
282 283 1.660917 GCGACCTAGGATTCCCTCG 59.339 63.158 17.98 14.22 43.14 4.63
283 284 2.051105 GGCGACCTAGGATTCCCTC 58.949 63.158 17.98 0.00 43.14 4.30
284 285 4.297207 GGCGACCTAGGATTCCCT 57.703 61.111 17.98 0.00 46.62 4.20
304 305 3.068691 TCTCCCGAGGGCGACTTG 61.069 66.667 2.58 0.00 40.82 3.16
305 306 2.756283 CTCTCCCGAGGGCGACTT 60.756 66.667 2.58 0.00 40.82 3.01
503 504 5.376625 TGAAAAGATATGGAATTCCGGGAG 58.623 41.667 19.57 0.00 39.43 4.30
504 505 5.381184 TGAAAAGATATGGAATTCCGGGA 57.619 39.130 19.57 7.57 39.43 5.14
505 506 5.536161 ACATGAAAAGATATGGAATTCCGGG 59.464 40.000 19.57 0.00 39.43 5.73
506 507 6.262944 TCACATGAAAAGATATGGAATTCCGG 59.737 38.462 19.57 0.00 39.43 5.14
507 508 7.263100 TCACATGAAAAGATATGGAATTCCG 57.737 36.000 19.57 3.05 39.43 4.30
519 520 8.463930 ACTTGGTCTTTTATCACATGAAAAGA 57.536 30.769 13.28 13.28 45.08 2.52
520 521 9.831737 CTACTTGGTCTTTTATCACATGAAAAG 57.168 33.333 0.00 5.36 41.83 2.27
521 522 9.349713 ACTACTTGGTCTTTTATCACATGAAAA 57.650 29.630 0.00 0.00 0.00 2.29
574 575 5.708544 TCATTGGGAATGGATAAATGAGCT 58.291 37.500 0.00 0.00 39.38 4.09
585 586 3.565482 CGATGTACCTTCATTGGGAATGG 59.435 47.826 0.00 0.00 39.38 3.16
599 600 7.709269 TGAATGCTCTTATAAACGATGTACC 57.291 36.000 0.00 0.00 0.00 3.34
602 603 8.184192 CCTTTTGAATGCTCTTATAAACGATGT 58.816 33.333 0.00 0.00 0.00 3.06
632 633 0.255890 ATGGTCGATGAACCCCTTGG 59.744 55.000 0.00 0.00 38.65 3.61
633 634 2.093181 TGTATGGTCGATGAACCCCTTG 60.093 50.000 0.00 0.00 38.65 3.61
656 661 7.514721 AGATACTACTTGGTCTTTTCCAAACA 58.485 34.615 0.00 0.00 45.26 2.83
660 665 8.660295 TTAGAGATACTACTTGGTCTTTTCCA 57.340 34.615 0.00 0.00 35.49 3.53
691 697 6.801377 TCGTTCAAAAATATTGCATGTCTCAC 59.199 34.615 0.00 0.00 0.00 3.51
695 701 7.460120 CGTTCTCGTTCAAAAATATTGCATGTC 60.460 37.037 0.00 0.00 0.00 3.06
698 704 6.523201 GTCGTTCTCGTTCAAAAATATTGCAT 59.477 34.615 0.00 0.00 38.33 3.96
699 705 5.849081 GTCGTTCTCGTTCAAAAATATTGCA 59.151 36.000 0.00 0.00 38.33 4.08
717 723 1.535028 TGTTGCCATGACATGTCGTTC 59.465 47.619 18.05 12.88 0.00 3.95
721 727 6.158598 ACTATTTTTGTTGCCATGACATGTC 58.841 36.000 19.27 19.27 0.00 3.06
725 731 5.757320 CCAAACTATTTTTGTTGCCATGACA 59.243 36.000 0.00 0.00 0.00 3.58
753 759 6.431198 TGTCATCACATGAGATGTCATTTG 57.569 37.500 25.99 11.73 40.84 2.32
757 763 5.797051 TCTTTGTCATCACATGAGATGTCA 58.203 37.500 25.99 23.97 44.46 3.58
799 909 2.408271 TGCCATCACTTCAGATGTCC 57.592 50.000 0.00 0.00 43.00 4.02
847 971 3.682999 GCCCTCCTTCTAGCGATTTTCTT 60.683 47.826 0.00 0.00 0.00 2.52
849 973 2.158885 AGCCCTCCTTCTAGCGATTTTC 60.159 50.000 0.00 0.00 0.00 2.29
945 1070 9.985730 TTCTAAGGGTATATAATGTTTACCACG 57.014 33.333 2.67 0.00 37.67 4.94
963 1088 0.252197 CTTCCCGTGGGTTCTAAGGG 59.748 60.000 4.53 0.00 43.32 3.95
965 1090 0.739813 CGCTTCCCGTGGGTTCTAAG 60.740 60.000 4.53 2.37 36.47 2.18
966 1091 1.294138 CGCTTCCCGTGGGTTCTAA 59.706 57.895 4.53 0.00 36.47 2.10
971 1096 4.016706 CTTCCGCTTCCCGTGGGT 62.017 66.667 4.53 0.00 43.71 4.51
1136 1273 1.336702 GGACCTGCTGATAGCTCATCG 60.337 57.143 0.00 0.00 42.97 3.84
1242 1389 4.418328 TCGGTGCCGATTTGGGGG 62.418 66.667 9.48 0.00 44.01 5.40
1287 1434 1.512156 CCTACCCAACAACACACGCC 61.512 60.000 0.00 0.00 0.00 5.68
1347 1494 2.124901 CCGGCGAATACCCTGCAA 60.125 61.111 9.30 0.00 0.00 4.08
1438 1585 2.122725 TATCCCTGGTACCCCGGC 60.123 66.667 10.07 0.00 35.58 6.13
1585 1732 1.603455 GTGGTGGTGGTGATGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
1655 1802 1.561643 TGTCGAGAGAAGGCCTGAAT 58.438 50.000 5.69 0.00 45.01 2.57
1685 1832 4.399219 TGTTCGAATCACATACCCCAAAA 58.601 39.130 0.00 0.00 0.00 2.44
1689 1836 3.804036 TGATGTTCGAATCACATACCCC 58.196 45.455 0.00 0.00 34.89 4.95
1709 1856 9.912634 AACAAGAAATTAACCACAGATAACATG 57.087 29.630 0.00 0.00 0.00 3.21
1716 1863 9.743057 CAATGTAAACAAGAAATTAACCACAGA 57.257 29.630 0.00 0.00 0.00 3.41
1738 1885 5.366829 TCTCAAATCTCAACAGTGCAATG 57.633 39.130 13.51 13.51 0.00 2.82
1746 1893 8.803397 ATGATCTCAATTCTCAAATCTCAACA 57.197 30.769 0.00 0.00 0.00 3.33
1747 1894 8.890718 TGATGATCTCAATTCTCAAATCTCAAC 58.109 33.333 0.00 0.00 0.00 3.18
1748 1895 9.110502 CTGATGATCTCAATTCTCAAATCTCAA 57.889 33.333 0.00 0.00 32.14 3.02
1750 1897 7.716123 ACCTGATGATCTCAATTCTCAAATCTC 59.284 37.037 0.00 0.00 32.14 2.75
1752 1899 7.804843 ACCTGATGATCTCAATTCTCAAATC 57.195 36.000 0.00 0.00 32.14 2.17
1753 1900 9.863650 ATAACCTGATGATCTCAATTCTCAAAT 57.136 29.630 0.00 0.00 32.14 2.32
1773 1953 5.491982 CTCCAGAACAACTAAGCATAACCT 58.508 41.667 0.00 0.00 0.00 3.50
1788 1968 2.027653 ACCAAAGAGCTAGCTCCAGAAC 60.028 50.000 35.58 15.21 43.70 3.01
1793 1973 3.342377 AAAGACCAAAGAGCTAGCTCC 57.658 47.619 35.58 21.57 43.70 4.70
1810 1990 1.615392 CCAAGCCCCTCTCACAAAAAG 59.385 52.381 0.00 0.00 0.00 2.27
1812 1992 0.555769 ACCAAGCCCCTCTCACAAAA 59.444 50.000 0.00 0.00 0.00 2.44
1816 1996 1.303643 CCAACCAAGCCCCTCTCAC 60.304 63.158 0.00 0.00 0.00 3.51
1863 2043 5.271625 TCGCGATTCAGACATACTTTAGTC 58.728 41.667 3.71 0.00 35.02 2.59
1910 2090 1.978617 AAATTCAGCCAGCACGGGG 60.979 57.895 0.00 0.00 34.06 5.73
1938 2119 7.668525 AGGCAACAACTACTGAACTATTTAC 57.331 36.000 0.00 0.00 41.41 2.01
1945 2126 5.744666 TGTTTAGGCAACAACTACTGAAC 57.255 39.130 0.00 0.00 42.76 3.18
2009 2191 7.990917 TCACTTCTACACAATGCTTTGTTTTA 58.009 30.769 14.80 8.76 43.57 1.52
2010 2192 6.862209 TCACTTCTACACAATGCTTTGTTTT 58.138 32.000 14.80 8.12 43.57 2.43
2037 2219 9.747293 CCAGCATATATCTGTGATTCTGTATAG 57.253 37.037 9.75 0.00 0.00 1.31
2200 2391 7.273381 GTGCAAACAATATGTCAACTAACCATC 59.727 37.037 0.00 0.00 0.00 3.51
2247 2438 6.398234 AGATGTCGACTTAGAGTGCATAAT 57.602 37.500 17.92 0.00 0.00 1.28
2248 2439 5.836821 AGATGTCGACTTAGAGTGCATAA 57.163 39.130 17.92 0.00 0.00 1.90
2249 2440 6.937436 TTAGATGTCGACTTAGAGTGCATA 57.063 37.500 17.92 0.00 0.00 3.14
2261 2452 5.751028 CCTCCATTCTCTTTTAGATGTCGAC 59.249 44.000 9.11 9.11 33.05 4.20
2348 2540 1.951631 GATCGCCGCTGTCTAAGGC 60.952 63.158 0.00 0.00 46.88 4.35
2363 2555 7.164122 TGAGCATCTATTGGTTATTCCAGATC 58.836 38.462 0.00 0.00 41.44 2.75
2496 2706 2.549754 GCTTGCATAACACACTGACTGT 59.450 45.455 0.00 0.00 0.00 3.55
2647 2857 3.386726 CCTCGGGTGATTACCTTACATCA 59.613 47.826 6.62 0.00 46.66 3.07
2675 2885 1.287730 GACTTCACCACTGCGCAGAG 61.288 60.000 42.03 33.60 0.00 3.35
2677 2887 2.320587 GGACTTCACCACTGCGCAG 61.321 63.158 34.89 34.89 0.00 5.18
2678 2888 2.280797 GGACTTCACCACTGCGCA 60.281 61.111 10.98 10.98 0.00 6.09
2692 2902 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
2707 2917 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2726 2936 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2777 2991 1.847968 ACAAGGTGGGGTCTGGGAG 60.848 63.158 0.00 0.00 0.00 4.30
2789 3003 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2790 3004 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2791 3005 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2792 3006 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2793 3007 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2794 3008 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2795 3009 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2796 3010 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2837 3051 6.572703 GCATGTAGACTTAGCTAGGGATTACC 60.573 46.154 7.87 0.00 40.67 2.85
2924 3140 6.573434 TGTATCAAGACATCATCCTGTGTAC 58.427 40.000 0.00 0.00 0.00 2.90
2960 3176 5.856986 CCGGTATCTATACACATCTTTGTCG 59.143 44.000 0.00 0.00 34.98 4.35
2980 3200 1.275666 TCATCCATTGACACTCCGGT 58.724 50.000 0.00 0.00 0.00 5.28
2983 3203 2.715046 TGCTTCATCCATTGACACTCC 58.285 47.619 0.00 0.00 32.84 3.85
2984 3204 4.978083 AATGCTTCATCCATTGACACTC 57.022 40.909 0.00 0.00 32.84 3.51
2986 3206 7.464977 GCAATAAAATGCTTCATCCATTGACAC 60.465 37.037 0.00 0.00 43.06 3.67
2987 3207 6.535865 GCAATAAAATGCTTCATCCATTGACA 59.464 34.615 0.00 0.00 43.06 3.58
2988 3208 6.535865 TGCAATAAAATGCTTCATCCATTGAC 59.464 34.615 0.67 0.00 46.54 3.18
2996 3216 4.632688 GCCTTGTGCAATAAAATGCTTCAT 59.367 37.500 0.00 0.00 46.54 2.57
3018 3238 5.357742 AATTGAATGAAAATACCAGGGGC 57.642 39.130 0.00 0.00 0.00 5.80
3037 3260 8.776376 ATTAATGCGATGAAAACAGGAAAATT 57.224 26.923 0.00 0.00 0.00 1.82
3062 3285 2.490328 CTGCAAAAGGAAACGCAAGA 57.510 45.000 0.00 0.00 43.62 3.02
3234 3461 6.810182 ACACAGGTAACAGAATACGTTCATAC 59.190 38.462 0.00 0.00 36.79 2.39
3242 3469 9.821662 GTTTATTTGACACAGGTAACAGAATAC 57.178 33.333 0.00 0.00 41.41 1.89
3309 3536 0.450184 ACACTTTGCACAACACCGTC 59.550 50.000 0.00 0.00 0.00 4.79
3354 3581 4.681025 CCAAGTTTCCACAATCAACGAATG 59.319 41.667 0.00 0.00 0.00 2.67
3358 3585 3.371168 CACCAAGTTTCCACAATCAACG 58.629 45.455 0.00 0.00 0.00 4.10
3408 3635 2.360801 TGCCAAAGTACAAACTCAAGCC 59.639 45.455 0.00 0.00 33.75 4.35
3409 3636 3.181491 TGTGCCAAAGTACAAACTCAAGC 60.181 43.478 0.00 0.00 35.49 4.01
3410 3637 4.096382 ACTGTGCCAAAGTACAAACTCAAG 59.904 41.667 0.00 0.00 38.20 3.02
3411 3638 4.013728 ACTGTGCCAAAGTACAAACTCAA 58.986 39.130 0.00 0.00 38.20 3.02
3412 3639 3.616219 ACTGTGCCAAAGTACAAACTCA 58.384 40.909 0.00 0.00 38.20 3.41
3413 3640 5.296035 AGTTACTGTGCCAAAGTACAAACTC 59.704 40.000 0.00 0.00 35.85 3.01
3498 3725 3.810386 GGGAGAGTTCTAATTCGCCAATC 59.190 47.826 9.53 0.00 36.55 2.67
3521 3748 9.667107 TTCTAACCCTACTTTTGAATATGTCAG 57.333 33.333 0.00 0.00 37.61 3.51
3544 3771 3.073062 ACTTGCTTGATGTGTAGGGTTCT 59.927 43.478 0.00 0.00 0.00 3.01
3548 3775 2.086869 CCACTTGCTTGATGTGTAGGG 58.913 52.381 0.00 0.00 0.00 3.53
3561 3788 2.126417 CTGTGACAGCAGCCACTTGC 62.126 60.000 0.00 0.00 44.41 4.01
3580 3807 2.012673 CCTTGGCACAGAGTAATCAGC 58.987 52.381 0.00 0.00 42.39 4.26
3585 3812 1.133809 AGGGCCTTGGCACAGAGTAA 61.134 55.000 16.85 0.00 42.39 2.24
3598 3825 1.073923 CAGGTGAAAACACTAGGGCCT 59.926 52.381 12.58 12.58 0.00 5.19
3602 3829 3.741344 CGTCTTCAGGTGAAAACACTAGG 59.259 47.826 0.00 0.00 33.07 3.02
3613 3840 1.276421 AGAACCCATCGTCTTCAGGTG 59.724 52.381 0.00 0.00 0.00 4.00
3638 3865 2.958818 AGGAGTGTCTGTGTTGGTAGA 58.041 47.619 0.00 0.00 0.00 2.59
3639 3866 4.462834 TCATAGGAGTGTCTGTGTTGGTAG 59.537 45.833 0.00 0.00 0.00 3.18
3645 3872 5.592282 CACTAGATCATAGGAGTGTCTGTGT 59.408 44.000 0.00 0.00 35.61 3.72
3646 3873 5.507149 GCACTAGATCATAGGAGTGTCTGTG 60.507 48.000 0.00 0.00 41.14 3.66
3648 3875 4.582240 TGCACTAGATCATAGGAGTGTCTG 59.418 45.833 0.00 0.00 41.14 3.51
3650 3877 5.720371 ATGCACTAGATCATAGGAGTGTC 57.280 43.478 0.00 0.00 41.14 3.67
3651 3878 6.547402 TCTATGCACTAGATCATAGGAGTGT 58.453 40.000 23.07 0.76 41.34 3.55
3667 3894 7.857885 CGGATTTTTCCTAAGAAATCTATGCAC 59.142 37.037 0.00 0.00 41.55 4.57
3668 3895 7.556275 ACGGATTTTTCCTAAGAAATCTATGCA 59.444 33.333 0.00 0.00 41.55 3.96
3689 4485 5.399991 TCTAGGATTACAACCCATACGGAT 58.600 41.667 0.00 0.00 34.64 4.18
3690 4486 4.806892 TCTAGGATTACAACCCATACGGA 58.193 43.478 0.00 0.00 34.64 4.69
3691 4487 4.021368 CCTCTAGGATTACAACCCATACGG 60.021 50.000 0.00 0.00 37.39 4.02
3693 4489 6.099269 TCAACCTCTAGGATTACAACCCATAC 59.901 42.308 2.23 0.00 38.94 2.39
3700 4497 6.127535 CGGTAGTTCAACCTCTAGGATTACAA 60.128 42.308 2.23 0.00 37.39 2.41
3710 4507 0.608640 CAGCCGGTAGTTCAACCTCT 59.391 55.000 1.90 0.00 37.39 3.69
3711 4508 1.019805 GCAGCCGGTAGTTCAACCTC 61.020 60.000 1.90 0.00 37.39 3.85
3714 4511 1.912371 GCAGCAGCCGGTAGTTCAAC 61.912 60.000 1.90 0.00 33.58 3.18
3715 4512 1.671054 GCAGCAGCCGGTAGTTCAA 60.671 57.895 1.90 0.00 33.58 2.69
3716 4513 2.047274 GCAGCAGCCGGTAGTTCA 60.047 61.111 1.90 0.00 33.58 3.18
3726 4523 0.731417 CAAGTAGTCATGGCAGCAGC 59.269 55.000 0.00 0.00 41.10 5.25
3727 4524 1.339438 ACCAAGTAGTCATGGCAGCAG 60.339 52.381 0.00 0.00 40.51 4.24
3744 4541 1.133809 AACCTAGAGCCTTGGCACCA 61.134 55.000 14.54 0.00 29.74 4.17
3769 4566 9.083422 ACTATGTGTATAATCTATCTGCTGTGT 57.917 33.333 0.00 0.00 0.00 3.72
3770 4567 9.920133 AACTATGTGTATAATCTATCTGCTGTG 57.080 33.333 0.00 0.00 0.00 3.66
3807 4607 2.701423 TGCCCTGACTAGTGTGTGTAAA 59.299 45.455 0.00 0.00 0.00 2.01
3811 4611 0.671781 GCTGCCCTGACTAGTGTGTG 60.672 60.000 0.00 0.00 0.00 3.82
3814 4614 0.251354 CATGCTGCCCTGACTAGTGT 59.749 55.000 0.00 0.00 0.00 3.55
3815 4615 0.251354 ACATGCTGCCCTGACTAGTG 59.749 55.000 0.00 0.00 0.00 2.74
3816 4616 1.482593 GTACATGCTGCCCTGACTAGT 59.517 52.381 0.00 0.00 0.00 2.57
3817 4617 1.536922 CGTACATGCTGCCCTGACTAG 60.537 57.143 0.00 0.00 0.00 2.57
3818 4618 0.459899 CGTACATGCTGCCCTGACTA 59.540 55.000 0.00 0.00 0.00 2.59
3820 4620 2.464459 GCGTACATGCTGCCCTGAC 61.464 63.158 0.00 0.00 0.00 3.51
3822 4622 2.124983 AGCGTACATGCTGCCCTG 60.125 61.111 0.00 0.00 45.28 4.45
3836 4636 6.494893 ATCTTAGTAGAATGCTCTAGAGCG 57.505 41.667 33.55 18.43 44.81 5.03
3893 4739 7.576236 ACTGTAATGTATTTATGCGAATCAGC 58.424 34.615 0.00 0.00 37.71 4.26
3944 4790 6.864685 TCAGTTTGAGACATTCATTGAATTGC 59.135 34.615 9.19 4.91 35.27 3.56
4015 4864 8.579006 TGAGCATTCATTGAATTGTTTTCTAGT 58.421 29.630 9.19 0.00 28.87 2.57
4036 4885 8.441311 ACTCCTTAATTCCATCTATATGAGCA 57.559 34.615 0.00 0.00 34.84 4.26
4037 4886 9.160496 CAACTCCTTAATTCCATCTATATGAGC 57.840 37.037 0.00 0.00 34.84 4.26
4040 4889 9.442047 GGTCAACTCCTTAATTCCATCTATATG 57.558 37.037 0.00 0.00 0.00 1.78
4041 4890 8.606830 GGGTCAACTCCTTAATTCCATCTATAT 58.393 37.037 0.00 0.00 0.00 0.86
4042 4891 7.570982 TGGGTCAACTCCTTAATTCCATCTATA 59.429 37.037 0.00 0.00 0.00 1.31
4043 4892 6.389869 TGGGTCAACTCCTTAATTCCATCTAT 59.610 38.462 0.00 0.00 0.00 1.98
4044 4893 5.729229 TGGGTCAACTCCTTAATTCCATCTA 59.271 40.000 0.00 0.00 0.00 1.98
4046 4895 4.640647 GTGGGTCAACTCCTTAATTCCATC 59.359 45.833 0.00 0.00 0.00 3.51
4048 4897 3.655777 AGTGGGTCAACTCCTTAATTCCA 59.344 43.478 0.00 0.00 0.00 3.53
4049 4898 4.302559 AGTGGGTCAACTCCTTAATTCC 57.697 45.455 0.00 0.00 0.00 3.01
4050 4899 6.004574 AGAAAGTGGGTCAACTCCTTAATTC 58.995 40.000 0.00 0.00 0.00 2.17
4051 4900 5.953571 AGAAAGTGGGTCAACTCCTTAATT 58.046 37.500 0.00 0.00 0.00 1.40
4053 4902 4.202430 GGAGAAAGTGGGTCAACTCCTTAA 60.202 45.833 0.00 0.00 40.20 1.85
4054 4903 3.326880 GGAGAAAGTGGGTCAACTCCTTA 59.673 47.826 0.00 0.00 40.20 2.69
4056 4905 1.700186 GGAGAAAGTGGGTCAACTCCT 59.300 52.381 0.00 0.00 40.20 3.69
4057 4906 1.420138 TGGAGAAAGTGGGTCAACTCC 59.580 52.381 0.00 0.00 42.64 3.85
4058 4907 2.930826 TGGAGAAAGTGGGTCAACTC 57.069 50.000 0.00 0.00 0.00 3.01
4059 4908 3.884037 ATTGGAGAAAGTGGGTCAACT 57.116 42.857 0.00 0.00 0.00 3.16
4060 4909 4.340950 TGAAATTGGAGAAAGTGGGTCAAC 59.659 41.667 0.00 0.00 0.00 3.18
4061 4910 4.541705 TGAAATTGGAGAAAGTGGGTCAA 58.458 39.130 0.00 0.00 0.00 3.18
4062 4911 4.177537 TGAAATTGGAGAAAGTGGGTCA 57.822 40.909 0.00 0.00 0.00 4.02
4063 4912 8.519799 TTATATGAAATTGGAGAAAGTGGGTC 57.480 34.615 0.00 0.00 0.00 4.46
4064 4913 8.893563 TTTATATGAAATTGGAGAAAGTGGGT 57.106 30.769 0.00 0.00 0.00 4.51
4065 4914 8.416329 CCTTTATATGAAATTGGAGAAAGTGGG 58.584 37.037 0.00 0.00 0.00 4.61
4066 4915 9.189156 TCCTTTATATGAAATTGGAGAAAGTGG 57.811 33.333 0.00 0.00 0.00 4.00
4068 4917 8.907885 GCTCCTTTATATGAAATTGGAGAAAGT 58.092 33.333 14.64 0.00 41.31 2.66
4094 4943 5.355596 CAACCTCCTTGTGAAGAGCTATAG 58.644 45.833 0.00 0.00 0.00 1.31
4095 4944 4.162320 CCAACCTCCTTGTGAAGAGCTATA 59.838 45.833 0.00 0.00 0.00 1.31
4096 4945 3.054802 CCAACCTCCTTGTGAAGAGCTAT 60.055 47.826 0.00 0.00 0.00 2.97
4097 4946 2.303022 CCAACCTCCTTGTGAAGAGCTA 59.697 50.000 0.00 0.00 0.00 3.32
4098 4947 1.072965 CCAACCTCCTTGTGAAGAGCT 59.927 52.381 0.00 0.00 0.00 4.09
4099 4948 1.528129 CCAACCTCCTTGTGAAGAGC 58.472 55.000 0.00 0.00 0.00 4.09
4100 4949 1.528129 GCCAACCTCCTTGTGAAGAG 58.472 55.000 0.00 0.00 0.00 2.85
4101 4950 0.250295 CGCCAACCTCCTTGTGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
4102 4951 0.535102 ACGCCAACCTCCTTGTGAAG 60.535 55.000 0.00 0.00 0.00 3.02
4103 4952 0.534203 GACGCCAACCTCCTTGTGAA 60.534 55.000 0.00 0.00 0.00 3.18
4104 4953 1.070786 GACGCCAACCTCCTTGTGA 59.929 57.895 0.00 0.00 0.00 3.58
4105 4954 0.951040 GAGACGCCAACCTCCTTGTG 60.951 60.000 0.00 0.00 0.00 3.33
4106 4955 1.371558 GAGACGCCAACCTCCTTGT 59.628 57.895 0.00 0.00 0.00 3.16
4107 4956 0.671781 CTGAGACGCCAACCTCCTTG 60.672 60.000 0.00 0.00 0.00 3.61
4108 4957 0.832135 TCTGAGACGCCAACCTCCTT 60.832 55.000 0.00 0.00 0.00 3.36
4109 4958 0.832135 TTCTGAGACGCCAACCTCCT 60.832 55.000 0.00 0.00 0.00 3.69
4110 4959 0.034896 TTTCTGAGACGCCAACCTCC 59.965 55.000 0.00 0.00 0.00 4.30
4111 4960 1.433534 CTTTCTGAGACGCCAACCTC 58.566 55.000 0.00 0.00 0.00 3.85
4112 4961 0.603975 GCTTTCTGAGACGCCAACCT 60.604 55.000 0.00 0.00 0.00 3.50
4113 4962 1.578206 GGCTTTCTGAGACGCCAACC 61.578 60.000 14.93 0.00 42.06 3.77
4114 4963 1.869690 GGCTTTCTGAGACGCCAAC 59.130 57.895 14.93 0.00 42.06 3.77
4126 4975 4.954092 AATTTGAGACGATCTGGCTTTC 57.046 40.909 0.00 0.00 0.00 2.62
4127 4976 4.616835 GCAAATTTGAGACGATCTGGCTTT 60.617 41.667 22.31 0.00 0.00 3.51
4130 4979 2.478539 GGCAAATTTGAGACGATCTGGC 60.479 50.000 22.31 1.35 0.00 4.85
4131 4980 2.749076 TGGCAAATTTGAGACGATCTGG 59.251 45.455 22.31 0.00 0.00 3.86
4133 4982 4.264253 TGATGGCAAATTTGAGACGATCT 58.736 39.130 22.31 0.00 0.00 2.75
4135 4984 4.264253 TCTGATGGCAAATTTGAGACGAT 58.736 39.130 22.31 6.90 0.00 3.73
4137 4986 4.595116 GATCTGATGGCAAATTTGAGACG 58.405 43.478 22.31 4.62 0.00 4.18
4171 5021 5.067954 GGCCTTGTTAATCCCAATATACGT 58.932 41.667 0.00 0.00 0.00 3.57
4181 5031 0.755327 ATGCCGGGCCTTGTTAATCC 60.755 55.000 17.97 0.00 0.00 3.01
4186 5036 0.033601 TCATTATGCCGGGCCTTGTT 60.034 50.000 17.97 0.00 0.00 2.83
4191 5041 0.883833 CTTGATCATTATGCCGGGCC 59.116 55.000 17.97 0.00 0.00 5.80
4195 5045 1.267806 GTGGCCTTGATCATTATGCCG 59.732 52.381 3.32 0.00 41.77 5.69
4197 5047 3.887716 AGAAGTGGCCTTGATCATTATGC 59.112 43.478 3.32 0.00 0.00 3.14
4199 5049 4.166725 TGGAGAAGTGGCCTTGATCATTAT 59.833 41.667 3.32 0.00 0.00 1.28
4204 5054 1.407989 CCTGGAGAAGTGGCCTTGATC 60.408 57.143 3.32 0.00 0.00 2.92
4212 5062 2.704572 GATGAACACCTGGAGAAGTGG 58.295 52.381 0.00 0.00 38.34 4.00
4218 5068 2.494059 ACAAACGATGAACACCTGGAG 58.506 47.619 0.00 0.00 0.00 3.86
4233 5083 4.276926 AGAATGGAGAGTGCAAGAACAAAC 59.723 41.667 0.00 0.00 0.00 2.93
4254 5104 4.826274 ACCATCGATTTCTCTTTGGAGA 57.174 40.909 4.50 0.00 45.75 3.71
4255 5105 4.333926 GGAACCATCGATTTCTCTTTGGAG 59.666 45.833 9.17 0.00 40.73 3.86
4256 5106 4.261801 GGAACCATCGATTTCTCTTTGGA 58.738 43.478 9.17 0.00 0.00 3.53
4257 5107 3.063997 CGGAACCATCGATTTCTCTTTGG 59.936 47.826 9.17 3.24 0.00 3.28
4258 5108 3.932710 TCGGAACCATCGATTTCTCTTTG 59.067 43.478 9.17 0.00 0.00 2.77
4259 5109 4.202245 TCGGAACCATCGATTTCTCTTT 57.798 40.909 9.17 0.00 0.00 2.52
4265 5115 2.838736 CCTGATCGGAACCATCGATTT 58.161 47.619 2.08 0.00 45.81 2.17
4268 5118 1.441729 GCCTGATCGGAACCATCGA 59.558 57.895 2.08 0.00 41.04 3.59
4270 5120 0.034059 ATCGCCTGATCGGAACCATC 59.966 55.000 2.08 0.00 33.16 3.51
4293 5143 4.097892 ACCATGCAGTAAATTTCGGATTCC 59.902 41.667 0.00 0.00 0.00 3.01
4294 5144 5.248870 ACCATGCAGTAAATTTCGGATTC 57.751 39.130 0.00 0.00 0.00 2.52
4295 5145 4.201910 CGACCATGCAGTAAATTTCGGATT 60.202 41.667 0.00 0.00 0.00 3.01
4296 5146 3.312421 CGACCATGCAGTAAATTTCGGAT 59.688 43.478 0.00 0.00 0.00 4.18
4297 5147 2.675844 CGACCATGCAGTAAATTTCGGA 59.324 45.455 0.00 0.00 0.00 4.55
4298 5148 2.418628 ACGACCATGCAGTAAATTTCGG 59.581 45.455 0.00 0.00 0.00 4.30
4299 5149 3.120338 ACACGACCATGCAGTAAATTTCG 60.120 43.478 0.00 0.00 0.00 3.46
4300 5150 4.419522 ACACGACCATGCAGTAAATTTC 57.580 40.909 0.00 0.00 0.00 2.17
4301 5151 4.277174 TGAACACGACCATGCAGTAAATTT 59.723 37.500 0.00 0.00 0.00 1.82
4302 5152 3.818210 TGAACACGACCATGCAGTAAATT 59.182 39.130 0.00 0.00 0.00 1.82
4303 5153 3.188460 GTGAACACGACCATGCAGTAAAT 59.812 43.478 0.00 0.00 0.00 1.40
4304 5154 2.546368 GTGAACACGACCATGCAGTAAA 59.454 45.455 0.00 0.00 0.00 2.01
4305 5155 2.139917 GTGAACACGACCATGCAGTAA 58.860 47.619 0.00 0.00 0.00 2.24
4306 5156 1.069358 TGTGAACACGACCATGCAGTA 59.931 47.619 0.00 0.00 0.00 2.74
4307 5157 0.179059 TGTGAACACGACCATGCAGT 60.179 50.000 0.00 0.00 0.00 4.40
4308 5158 0.943673 TTGTGAACACGACCATGCAG 59.056 50.000 0.00 0.00 0.00 4.41
4309 5159 1.333308 CTTTGTGAACACGACCATGCA 59.667 47.619 0.00 0.00 0.00 3.96
4310 5160 1.334960 CCTTTGTGAACACGACCATGC 60.335 52.381 0.00 0.00 0.00 4.06
4311 5161 1.334960 GCCTTTGTGAACACGACCATG 60.335 52.381 0.00 0.00 0.00 3.66
4312 5162 0.951558 GCCTTTGTGAACACGACCAT 59.048 50.000 0.00 0.00 0.00 3.55
4313 5163 0.393132 TGCCTTTGTGAACACGACCA 60.393 50.000 0.00 0.00 0.00 4.02
4314 5164 0.951558 ATGCCTTTGTGAACACGACC 59.048 50.000 0.00 0.00 0.00 4.79
4315 5165 3.747193 CATATGCCTTTGTGAACACGAC 58.253 45.455 0.00 0.00 0.00 4.34
4316 5166 2.161410 GCATATGCCTTTGTGAACACGA 59.839 45.455 17.26 0.00 34.31 4.35
4317 5167 2.162208 AGCATATGCCTTTGTGAACACG 59.838 45.455 23.96 0.00 43.38 4.49
4318 5168 3.441572 AGAGCATATGCCTTTGTGAACAC 59.558 43.478 23.96 0.00 43.38 3.32
4319 5169 3.689347 AGAGCATATGCCTTTGTGAACA 58.311 40.909 23.96 0.00 43.38 3.18
4320 5170 4.156556 TGAAGAGCATATGCCTTTGTGAAC 59.843 41.667 23.96 12.92 43.38 3.18
4321 5171 4.334552 TGAAGAGCATATGCCTTTGTGAA 58.665 39.130 23.96 8.77 43.38 3.18
4322 5172 3.954200 TGAAGAGCATATGCCTTTGTGA 58.046 40.909 23.96 9.43 43.38 3.58
4323 5173 4.913335 ATGAAGAGCATATGCCTTTGTG 57.087 40.909 23.96 0.00 43.38 3.33
4324 5174 5.198965 AGAATGAAGAGCATATGCCTTTGT 58.801 37.500 23.96 14.67 43.38 2.83
4325 5175 5.769484 AGAATGAAGAGCATATGCCTTTG 57.231 39.130 23.96 0.00 43.38 2.77
4326 5176 6.606395 AGAAAGAATGAAGAGCATATGCCTTT 59.394 34.615 23.96 20.54 43.38 3.11
4327 5177 6.039493 CAGAAAGAATGAAGAGCATATGCCTT 59.961 38.462 23.96 23.53 43.38 4.35
4328 5178 5.531659 CAGAAAGAATGAAGAGCATATGCCT 59.468 40.000 23.96 17.04 43.38 4.75
4329 5179 5.298777 ACAGAAAGAATGAAGAGCATATGCC 59.701 40.000 23.96 15.08 43.38 4.40
4330 5180 6.200100 CACAGAAAGAATGAAGAGCATATGC 58.800 40.000 20.36 20.36 35.78 3.14
4331 5181 6.183360 TGCACAGAAAGAATGAAGAGCATATG 60.183 38.462 0.00 0.00 35.78 1.78
4332 5182 5.884232 TGCACAGAAAGAATGAAGAGCATAT 59.116 36.000 0.00 0.00 35.78 1.78
4333 5183 5.247862 TGCACAGAAAGAATGAAGAGCATA 58.752 37.500 0.00 0.00 35.78 3.14
4334 5184 4.077108 TGCACAGAAAGAATGAAGAGCAT 58.923 39.130 0.00 0.00 39.43 3.79
4335 5185 3.479489 TGCACAGAAAGAATGAAGAGCA 58.521 40.909 0.00 0.00 0.00 4.26
4336 5186 4.438472 GGATGCACAGAAAGAATGAAGAGC 60.438 45.833 0.00 0.00 0.00 4.09
4337 5187 4.698780 TGGATGCACAGAAAGAATGAAGAG 59.301 41.667 0.00 0.00 0.00 2.85
4338 5188 4.456911 GTGGATGCACAGAAAGAATGAAGA 59.543 41.667 13.07 0.00 0.00 2.87
4339 5189 4.216902 TGTGGATGCACAGAAAGAATGAAG 59.783 41.667 16.89 0.00 0.00 3.02
4340 5190 4.143543 TGTGGATGCACAGAAAGAATGAA 58.856 39.130 16.89 0.00 0.00 2.57
4341 5191 3.753815 TGTGGATGCACAGAAAGAATGA 58.246 40.909 16.89 0.00 0.00 2.57
4342 5192 4.508461 TTGTGGATGCACAGAAAGAATG 57.492 40.909 19.83 0.00 36.35 2.67
4343 5193 5.534207 TTTTGTGGATGCACAGAAAGAAT 57.466 34.783 18.94 0.00 35.44 2.40
4344 5194 4.998671 TTTTGTGGATGCACAGAAAGAA 57.001 36.364 18.94 8.82 35.44 2.52
4345 5195 4.583907 TCATTTTGTGGATGCACAGAAAGA 59.416 37.500 23.67 21.56 35.44 2.52
4346 5196 4.873817 TCATTTTGTGGATGCACAGAAAG 58.126 39.130 23.67 19.87 35.44 2.62
4347 5197 4.933505 TCATTTTGTGGATGCACAGAAA 57.066 36.364 23.67 22.00 33.80 2.52
4348 5198 5.244402 AGAATCATTTTGTGGATGCACAGAA 59.756 36.000 22.46 22.46 36.35 3.02
4349 5199 4.768448 AGAATCATTTTGTGGATGCACAGA 59.232 37.500 19.83 13.40 36.35 3.41
4350 5200 5.068234 AGAATCATTTTGTGGATGCACAG 57.932 39.130 19.83 8.93 36.35 3.66
4351 5201 5.711506 AGTAGAATCATTTTGTGGATGCACA 59.288 36.000 16.89 16.89 0.00 4.57
4352 5202 6.199937 AGTAGAATCATTTTGTGGATGCAC 57.800 37.500 10.90 10.90 0.00 4.57
4353 5203 6.209192 ACAAGTAGAATCATTTTGTGGATGCA 59.791 34.615 0.00 0.00 31.34 3.96
4354 5204 6.529125 CACAAGTAGAATCATTTTGTGGATGC 59.471 38.462 12.66 0.00 42.84 3.91
4355 5205 7.819644 TCACAAGTAGAATCATTTTGTGGATG 58.180 34.615 17.28 0.00 45.21 3.51
4356 5206 8.464404 CATCACAAGTAGAATCATTTTGTGGAT 58.536 33.333 17.28 10.51 45.21 3.41
4357 5207 7.665145 TCATCACAAGTAGAATCATTTTGTGGA 59.335 33.333 17.28 9.46 45.21 4.02
4358 5208 7.819644 TCATCACAAGTAGAATCATTTTGTGG 58.180 34.615 17.28 7.97 45.21 4.17
4359 5209 9.850628 AATCATCACAAGTAGAATCATTTTGTG 57.149 29.630 13.69 13.69 46.03 3.33
4360 5210 9.850628 CAATCATCACAAGTAGAATCATTTTGT 57.149 29.630 0.00 0.00 32.60 2.83
4364 5214 9.404848 ACATCAATCATCACAAGTAGAATCATT 57.595 29.630 0.00 0.00 0.00 2.57
4365 5215 8.975663 ACATCAATCATCACAAGTAGAATCAT 57.024 30.769 0.00 0.00 0.00 2.45
4366 5216 8.797350 AACATCAATCATCACAAGTAGAATCA 57.203 30.769 0.00 0.00 0.00 2.57
4367 5217 9.499585 CAAACATCAATCATCACAAGTAGAATC 57.500 33.333 0.00 0.00 0.00 2.52
4368 5218 9.234827 TCAAACATCAATCATCACAAGTAGAAT 57.765 29.630 0.00 0.00 0.00 2.40
4369 5219 8.620116 TCAAACATCAATCATCACAAGTAGAA 57.380 30.769 0.00 0.00 0.00 2.10
4370 5220 8.797350 ATCAAACATCAATCATCACAAGTAGA 57.203 30.769 0.00 0.00 0.00 2.59
4371 5221 9.926751 GTATCAAACATCAATCATCACAAGTAG 57.073 33.333 0.00 0.00 0.00 2.57
4372 5222 9.671279 AGTATCAAACATCAATCATCACAAGTA 57.329 29.630 0.00 0.00 0.00 2.24
4373 5223 8.571461 AGTATCAAACATCAATCATCACAAGT 57.429 30.769 0.00 0.00 0.00 3.16
4374 5224 9.850628 AAAGTATCAAACATCAATCATCACAAG 57.149 29.630 0.00 0.00 0.00 3.16
4376 5226 9.628746 CAAAAGTATCAAACATCAATCATCACA 57.371 29.630 0.00 0.00 0.00 3.58
4377 5227 9.844790 TCAAAAGTATCAAACATCAATCATCAC 57.155 29.630 0.00 0.00 0.00 3.06
4378 5228 9.844790 GTCAAAAGTATCAAACATCAATCATCA 57.155 29.630 0.00 0.00 0.00 3.07
4379 5229 9.844790 TGTCAAAAGTATCAAACATCAATCATC 57.155 29.630 0.00 0.00 0.00 2.92
4415 5265 9.944376 AGAAGTACAGATTGTTAGAAGCAATAA 57.056 29.630 0.00 0.00 36.77 1.40
4416 5266 9.371136 CAGAAGTACAGATTGTTAGAAGCAATA 57.629 33.333 0.00 0.00 36.77 1.90
4417 5267 7.148340 GCAGAAGTACAGATTGTTAGAAGCAAT 60.148 37.037 0.00 0.00 39.04 3.56
4418 5268 6.147821 GCAGAAGTACAGATTGTTAGAAGCAA 59.852 38.462 0.00 0.00 0.00 3.91
4419 5269 5.639506 GCAGAAGTACAGATTGTTAGAAGCA 59.360 40.000 0.00 0.00 0.00 3.91
4420 5270 5.064071 GGCAGAAGTACAGATTGTTAGAAGC 59.936 44.000 0.00 0.00 0.00 3.86
4421 5271 6.091441 GTGGCAGAAGTACAGATTGTTAGAAG 59.909 42.308 0.00 0.00 0.00 2.85
4422 5272 5.932303 GTGGCAGAAGTACAGATTGTTAGAA 59.068 40.000 0.00 0.00 0.00 2.10
4423 5273 5.246203 AGTGGCAGAAGTACAGATTGTTAGA 59.754 40.000 0.00 0.00 0.00 2.10
4424 5274 5.349817 CAGTGGCAGAAGTACAGATTGTTAG 59.650 44.000 0.00 0.00 0.00 2.34
4425 5275 5.237815 CAGTGGCAGAAGTACAGATTGTTA 58.762 41.667 0.00 0.00 0.00 2.41
4426 5276 4.067896 CAGTGGCAGAAGTACAGATTGTT 58.932 43.478 0.00 0.00 0.00 2.83
4427 5277 3.557898 CCAGTGGCAGAAGTACAGATTGT 60.558 47.826 0.00 0.00 0.00 2.71
4428 5278 3.005554 CCAGTGGCAGAAGTACAGATTG 58.994 50.000 0.00 0.00 0.00 2.67
4429 5279 3.340814 CCAGTGGCAGAAGTACAGATT 57.659 47.619 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.