Multiple sequence alignment - TraesCS5A01G291500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G291500 | chr5A | 100.000 | 9337 | 0 | 0 | 1 | 9337 | 502288734 | 502298070 | 0.000000e+00 | 17243.0 |
1 | TraesCS5A01G291500 | chr5A | 90.775 | 271 | 14 | 8 | 7911 | 8177 | 193890587 | 193890850 | 1.490000e-92 | 351.0 |
2 | TraesCS5A01G291500 | chr5A | 88.530 | 279 | 21 | 7 | 7903 | 8177 | 219060888 | 219060617 | 2.510000e-85 | 327.0 |
3 | TraesCS5A01G291500 | chr5A | 98.864 | 176 | 2 | 0 | 2957 | 3132 | 177619418 | 177619243 | 1.960000e-81 | 315.0 |
4 | TraesCS5A01G291500 | chr5B | 93.566 | 2207 | 75 | 21 | 4953 | 7135 | 476627532 | 476629695 | 0.000000e+00 | 3227.0 |
5 | TraesCS5A01G291500 | chr5B | 95.748 | 1811 | 57 | 10 | 3131 | 4927 | 476625730 | 476627534 | 0.000000e+00 | 2900.0 |
6 | TraesCS5A01G291500 | chr5B | 99.621 | 1055 | 3 | 1 | 6847 | 7900 | 351934610 | 351933556 | 0.000000e+00 | 1925.0 |
7 | TraesCS5A01G291500 | chr5B | 90.816 | 1263 | 64 | 21 | 7130 | 8352 | 476629793 | 476631043 | 0.000000e+00 | 1642.0 |
8 | TraesCS5A01G291500 | chr5B | 93.381 | 846 | 39 | 9 | 875 | 1717 | 476624015 | 476624846 | 0.000000e+00 | 1236.0 |
9 | TraesCS5A01G291500 | chr5B | 87.928 | 671 | 73 | 7 | 10 | 677 | 660722704 | 660722039 | 0.000000e+00 | 784.0 |
10 | TraesCS5A01G291500 | chr5B | 92.661 | 545 | 20 | 8 | 1971 | 2504 | 476624994 | 476625529 | 0.000000e+00 | 767.0 |
11 | TraesCS5A01G291500 | chr5B | 88.649 | 370 | 11 | 13 | 8553 | 8914 | 476631355 | 476631701 | 1.120000e-113 | 422.0 |
12 | TraesCS5A01G291500 | chr5B | 95.261 | 211 | 10 | 0 | 2744 | 2954 | 476625525 | 476625735 | 1.500000e-87 | 335.0 |
13 | TraesCS5A01G291500 | chr5B | 98.864 | 176 | 2 | 0 | 2957 | 3132 | 215888249 | 215888074 | 1.960000e-81 | 315.0 |
14 | TraesCS5A01G291500 | chr5B | 98.857 | 175 | 2 | 0 | 2957 | 3131 | 418812323 | 418812149 | 7.040000e-81 | 313.0 |
15 | TraesCS5A01G291500 | chr5B | 98.851 | 174 | 2 | 0 | 2957 | 3130 | 291789120 | 291789293 | 2.530000e-80 | 311.0 |
16 | TraesCS5A01G291500 | chr5B | 94.479 | 163 | 8 | 1 | 2230 | 2391 | 455170701 | 455170863 | 5.600000e-62 | 250.0 |
17 | TraesCS5A01G291500 | chr5B | 86.818 | 220 | 11 | 11 | 8935 | 9139 | 476631690 | 476631906 | 7.290000e-56 | 230.0 |
18 | TraesCS5A01G291500 | chr5B | 89.189 | 185 | 12 | 4 | 9153 | 9329 | 476631959 | 476632143 | 3.390000e-54 | 224.0 |
19 | TraesCS5A01G291500 | chr5B | 93.836 | 146 | 3 | 4 | 1790 | 1933 | 476624852 | 476624993 | 2.040000e-51 | 215.0 |
20 | TraesCS5A01G291500 | chr5B | 95.556 | 90 | 4 | 0 | 8351 | 8440 | 476631096 | 476631185 | 2.720000e-30 | 145.0 |
21 | TraesCS5A01G291500 | chr5B | 88.235 | 119 | 13 | 1 | 2503 | 2620 | 61558980 | 61558862 | 3.520000e-29 | 141.0 |
22 | TraesCS5A01G291500 | chr5B | 88.793 | 116 | 12 | 1 | 2506 | 2620 | 604227882 | 604227767 | 3.520000e-29 | 141.0 |
23 | TraesCS5A01G291500 | chr5B | 95.745 | 47 | 2 | 0 | 762 | 808 | 476623938 | 476623984 | 1.010000e-09 | 76.8 |
24 | TraesCS5A01G291500 | chr5D | 94.275 | 1904 | 57 | 17 | 4542 | 6431 | 396684945 | 396686810 | 0.000000e+00 | 2865.0 |
25 | TraesCS5A01G291500 | chr5D | 91.027 | 2151 | 83 | 40 | 6429 | 8518 | 396686912 | 396689013 | 0.000000e+00 | 2802.0 |
26 | TraesCS5A01G291500 | chr5D | 93.446 | 1419 | 78 | 12 | 3133 | 4545 | 396683378 | 396684787 | 0.000000e+00 | 2091.0 |
27 | TraesCS5A01G291500 | chr5D | 90.020 | 982 | 59 | 24 | 747 | 1717 | 396681660 | 396682613 | 0.000000e+00 | 1234.0 |
28 | TraesCS5A01G291500 | chr5D | 88.279 | 674 | 70 | 9 | 10 | 679 | 360908418 | 360909086 | 0.000000e+00 | 798.0 |
29 | TraesCS5A01G291500 | chr5D | 90.640 | 609 | 11 | 14 | 8553 | 9139 | 396689144 | 396689728 | 0.000000e+00 | 767.0 |
30 | TraesCS5A01G291500 | chr5D | 94.773 | 440 | 17 | 3 | 1790 | 2224 | 396682619 | 396683057 | 0.000000e+00 | 680.0 |
31 | TraesCS5A01G291500 | chr5D | 92.488 | 213 | 15 | 1 | 2744 | 2956 | 396683172 | 396683383 | 4.240000e-78 | 303.0 |
32 | TraesCS5A01G291500 | chr5D | 89.071 | 183 | 12 | 3 | 9154 | 9329 | 396689779 | 396689960 | 4.390000e-53 | 220.0 |
33 | TraesCS5A01G291500 | chr5D | 83.721 | 129 | 7 | 7 | 2389 | 2504 | 396683049 | 396683176 | 9.910000e-20 | 110.0 |
34 | TraesCS5A01G291500 | chr6A | 99.810 | 1055 | 1 | 1 | 6847 | 7900 | 45257555 | 45258609 | 0.000000e+00 | 1936.0 |
35 | TraesCS5A01G291500 | chr6A | 87.481 | 671 | 76 | 6 | 10 | 677 | 18578297 | 18578962 | 0.000000e+00 | 767.0 |
36 | TraesCS5A01G291500 | chr6A | 89.892 | 277 | 17 | 7 | 7905 | 8177 | 390566780 | 390567049 | 6.940000e-91 | 346.0 |
37 | TraesCS5A01G291500 | chr6A | 98.851 | 174 | 2 | 0 | 2957 | 3130 | 168007205 | 168007032 | 2.530000e-80 | 311.0 |
38 | TraesCS5A01G291500 | chrUn | 99.621 | 1055 | 3 | 1 | 6847 | 7900 | 415418994 | 415417940 | 0.000000e+00 | 1925.0 |
39 | TraesCS5A01G291500 | chrUn | 99.800 | 1002 | 2 | 0 | 6899 | 7900 | 390867478 | 390866477 | 0.000000e+00 | 1840.0 |
40 | TraesCS5A01G291500 | chrUn | 87.173 | 421 | 44 | 6 | 6206 | 6625 | 112169277 | 112169688 | 3.950000e-128 | 470.0 |
41 | TraesCS5A01G291500 | chr7A | 99.621 | 1055 | 3 | 1 | 6847 | 7900 | 424985767 | 424984713 | 0.000000e+00 | 1925.0 |
42 | TraesCS5A01G291500 | chr7A | 99.621 | 1055 | 3 | 1 | 6847 | 7900 | 723172516 | 723173570 | 0.000000e+00 | 1925.0 |
43 | TraesCS5A01G291500 | chr7A | 99.621 | 1055 | 3 | 1 | 6847 | 7900 | 728863164 | 728862110 | 0.000000e+00 | 1925.0 |
44 | TraesCS5A01G291500 | chr7A | 83.333 | 198 | 21 | 9 | 2508 | 2693 | 735723429 | 735723626 | 1.250000e-38 | 172.0 |
45 | TraesCS5A01G291500 | chr6B | 99.431 | 1055 | 5 | 1 | 6847 | 7900 | 700869062 | 700870116 | 0.000000e+00 | 1914.0 |
46 | TraesCS5A01G291500 | chr6B | 88.793 | 116 | 12 | 1 | 2506 | 2620 | 560702988 | 560702873 | 3.520000e-29 | 141.0 |
47 | TraesCS5A01G291500 | chr2B | 99.242 | 1055 | 7 | 1 | 6847 | 7900 | 747993451 | 747994505 | 0.000000e+00 | 1903.0 |
48 | TraesCS5A01G291500 | chr2B | 91.496 | 682 | 51 | 6 | 1 | 679 | 55911222 | 55911899 | 0.000000e+00 | 931.0 |
49 | TraesCS5A01G291500 | chr2B | 91.137 | 677 | 57 | 1 | 1 | 677 | 546302147 | 546301474 | 0.000000e+00 | 915.0 |
50 | TraesCS5A01G291500 | chr2B | 96.226 | 159 | 6 | 0 | 2230 | 2388 | 209091312 | 209091154 | 2.590000e-65 | 261.0 |
51 | TraesCS5A01G291500 | chr2B | 95.000 | 160 | 8 | 0 | 2230 | 2389 | 601187849 | 601187690 | 1.560000e-62 | 252.0 |
52 | TraesCS5A01G291500 | chr2B | 95.484 | 155 | 7 | 0 | 2230 | 2384 | 578264698 | 578264852 | 2.010000e-61 | 248.0 |
53 | TraesCS5A01G291500 | chr2B | 100.000 | 40 | 0 | 0 | 704 | 743 | 448904773 | 448904734 | 3.620000e-09 | 75.0 |
54 | TraesCS5A01G291500 | chr2A | 95.000 | 680 | 31 | 3 | 1 | 678 | 606528723 | 606528045 | 0.000000e+00 | 1064.0 |
55 | TraesCS5A01G291500 | chr2A | 96.277 | 188 | 6 | 1 | 2948 | 3135 | 713193181 | 713193367 | 3.280000e-79 | 307.0 |
56 | TraesCS5A01G291500 | chr2A | 95.597 | 159 | 7 | 0 | 2230 | 2388 | 449270941 | 449271099 | 1.200000e-63 | 255.0 |
57 | TraesCS5A01G291500 | chr2A | 88.235 | 119 | 13 | 1 | 2503 | 2620 | 705528390 | 705528272 | 3.520000e-29 | 141.0 |
58 | TraesCS5A01G291500 | chr2A | 95.918 | 49 | 1 | 1 | 696 | 743 | 511474200 | 511474152 | 2.800000e-10 | 78.7 |
59 | TraesCS5A01G291500 | chr7D | 87.630 | 671 | 76 | 6 | 10 | 677 | 501027963 | 501027297 | 0.000000e+00 | 773.0 |
60 | TraesCS5A01G291500 | chr7D | 97.297 | 37 | 1 | 0 | 2705 | 2741 | 383335820 | 383335784 | 7.830000e-06 | 63.9 |
61 | TraesCS5A01G291500 | chr4A | 86.736 | 671 | 82 | 7 | 10 | 677 | 603833114 | 603832448 | 0.000000e+00 | 739.0 |
62 | TraesCS5A01G291500 | chr4A | 84.708 | 497 | 65 | 7 | 6131 | 6626 | 219798920 | 219798434 | 3.920000e-133 | 486.0 |
63 | TraesCS5A01G291500 | chr4A | 98.870 | 177 | 2 | 0 | 2955 | 3131 | 733434357 | 733434533 | 5.440000e-82 | 316.0 |
64 | TraesCS5A01G291500 | chr4A | 96.129 | 155 | 6 | 0 | 2230 | 2384 | 115567080 | 115567234 | 4.330000e-63 | 254.0 |
65 | TraesCS5A01G291500 | chr4A | 94.000 | 50 | 2 | 1 | 5988 | 6036 | 721917126 | 721917175 | 3.620000e-09 | 75.0 |
66 | TraesCS5A01G291500 | chr3B | 88.247 | 519 | 34 | 8 | 7535 | 8051 | 706502536 | 706502043 | 6.240000e-166 | 595.0 |
67 | TraesCS5A01G291500 | chr1D | 88.163 | 490 | 52 | 5 | 6128 | 6616 | 454501738 | 454502222 | 6.290000e-161 | 579.0 |
68 | TraesCS5A01G291500 | chr1D | 94.000 | 50 | 2 | 1 | 5988 | 6036 | 454501677 | 454501726 | 3.620000e-09 | 75.0 |
69 | TraesCS5A01G291500 | chr3A | 86.061 | 495 | 59 | 7 | 6123 | 6616 | 237364770 | 237364285 | 2.990000e-144 | 523.0 |
70 | TraesCS5A01G291500 | chr3A | 81.250 | 640 | 110 | 8 | 1 | 634 | 33211918 | 33212553 | 8.360000e-140 | 508.0 |
71 | TraesCS5A01G291500 | chr3A | 98.305 | 177 | 3 | 0 | 2955 | 3131 | 290424120 | 290423944 | 2.530000e-80 | 311.0 |
72 | TraesCS5A01G291500 | chr3A | 95.597 | 159 | 7 | 0 | 2230 | 2388 | 375018096 | 375018254 | 1.200000e-63 | 255.0 |
73 | TraesCS5A01G291500 | chr3A | 89.655 | 116 | 11 | 1 | 2506 | 2620 | 545893313 | 545893198 | 7.560000e-31 | 147.0 |
74 | TraesCS5A01G291500 | chr3A | 88.793 | 116 | 12 | 1 | 2506 | 2620 | 334785346 | 334785231 | 3.520000e-29 | 141.0 |
75 | TraesCS5A01G291500 | chr7B | 88.586 | 403 | 40 | 5 | 6215 | 6616 | 1013931 | 1013534 | 1.410000e-132 | 484.0 |
76 | TraesCS5A01G291500 | chr7B | 98.857 | 175 | 2 | 0 | 2956 | 3130 | 672656196 | 672656370 | 7.040000e-81 | 313.0 |
77 | TraesCS5A01G291500 | chr2D | 88.060 | 402 | 44 | 3 | 6215 | 6616 | 508071642 | 508071245 | 3.050000e-129 | 473.0 |
78 | TraesCS5A01G291500 | chr2D | 78.571 | 630 | 120 | 12 | 52 | 675 | 480579743 | 480579123 | 1.460000e-107 | 401.0 |
79 | TraesCS5A01G291500 | chr2D | 95.918 | 49 | 1 | 1 | 696 | 743 | 377303432 | 377303384 | 2.800000e-10 | 78.7 |
80 | TraesCS5A01G291500 | chr6D | 88.329 | 377 | 27 | 6 | 7682 | 8058 | 42971105 | 42971464 | 4.000000e-118 | 436.0 |
81 | TraesCS5A01G291500 | chr1A | 87.368 | 380 | 31 | 6 | 7682 | 8061 | 18773847 | 18773485 | 4.030000e-113 | 420.0 |
82 | TraesCS5A01G291500 | chr1A | 87.097 | 124 | 14 | 2 | 2498 | 2620 | 492810433 | 492810311 | 1.260000e-28 | 139.0 |
83 | TraesCS5A01G291500 | chr1B | 89.552 | 268 | 18 | 6 | 7914 | 8177 | 129378704 | 129378443 | 1.940000e-86 | 331.0 |
84 | TraesCS5A01G291500 | chr1B | 95.597 | 159 | 7 | 0 | 2230 | 2388 | 326922838 | 326922996 | 1.200000e-63 | 255.0 |
85 | TraesCS5A01G291500 | chr3D | 88.889 | 117 | 12 | 1 | 2505 | 2620 | 420484419 | 420484303 | 9.770000e-30 | 143.0 |
86 | TraesCS5A01G291500 | chr3D | 97.059 | 34 | 1 | 0 | 3191 | 3224 | 595107064 | 595107097 | 3.640000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G291500 | chr5A | 502288734 | 502298070 | 9336 | False | 17243.000000 | 17243 | 100.000000 | 1 | 9337 | 1 | chr5A.!!$F2 | 9336 |
1 | TraesCS5A01G291500 | chr5B | 351933556 | 351934610 | 1054 | True | 1925.000000 | 1925 | 99.621000 | 6847 | 7900 | 1 | chr5B.!!$R3 | 1053 |
2 | TraesCS5A01G291500 | chr5B | 476623938 | 476632143 | 8205 | False | 951.650000 | 3227 | 92.602167 | 762 | 9329 | 12 | chr5B.!!$F3 | 8567 |
3 | TraesCS5A01G291500 | chr5B | 660722039 | 660722704 | 665 | True | 784.000000 | 784 | 87.928000 | 10 | 677 | 1 | chr5B.!!$R6 | 667 |
4 | TraesCS5A01G291500 | chr5D | 396681660 | 396689960 | 8300 | False | 1230.222222 | 2865 | 91.051222 | 747 | 9329 | 9 | chr5D.!!$F2 | 8582 |
5 | TraesCS5A01G291500 | chr5D | 360908418 | 360909086 | 668 | False | 798.000000 | 798 | 88.279000 | 10 | 679 | 1 | chr5D.!!$F1 | 669 |
6 | TraesCS5A01G291500 | chr6A | 45257555 | 45258609 | 1054 | False | 1936.000000 | 1936 | 99.810000 | 6847 | 7900 | 1 | chr6A.!!$F2 | 1053 |
7 | TraesCS5A01G291500 | chr6A | 18578297 | 18578962 | 665 | False | 767.000000 | 767 | 87.481000 | 10 | 677 | 1 | chr6A.!!$F1 | 667 |
8 | TraesCS5A01G291500 | chrUn | 415417940 | 415418994 | 1054 | True | 1925.000000 | 1925 | 99.621000 | 6847 | 7900 | 1 | chrUn.!!$R2 | 1053 |
9 | TraesCS5A01G291500 | chrUn | 390866477 | 390867478 | 1001 | True | 1840.000000 | 1840 | 99.800000 | 6899 | 7900 | 1 | chrUn.!!$R1 | 1001 |
10 | TraesCS5A01G291500 | chr7A | 424984713 | 424985767 | 1054 | True | 1925.000000 | 1925 | 99.621000 | 6847 | 7900 | 1 | chr7A.!!$R1 | 1053 |
11 | TraesCS5A01G291500 | chr7A | 723172516 | 723173570 | 1054 | False | 1925.000000 | 1925 | 99.621000 | 6847 | 7900 | 1 | chr7A.!!$F1 | 1053 |
12 | TraesCS5A01G291500 | chr7A | 728862110 | 728863164 | 1054 | True | 1925.000000 | 1925 | 99.621000 | 6847 | 7900 | 1 | chr7A.!!$R2 | 1053 |
13 | TraesCS5A01G291500 | chr6B | 700869062 | 700870116 | 1054 | False | 1914.000000 | 1914 | 99.431000 | 6847 | 7900 | 1 | chr6B.!!$F1 | 1053 |
14 | TraesCS5A01G291500 | chr2B | 747993451 | 747994505 | 1054 | False | 1903.000000 | 1903 | 99.242000 | 6847 | 7900 | 1 | chr2B.!!$F3 | 1053 |
15 | TraesCS5A01G291500 | chr2B | 55911222 | 55911899 | 677 | False | 931.000000 | 931 | 91.496000 | 1 | 679 | 1 | chr2B.!!$F1 | 678 |
16 | TraesCS5A01G291500 | chr2B | 546301474 | 546302147 | 673 | True | 915.000000 | 915 | 91.137000 | 1 | 677 | 1 | chr2B.!!$R3 | 676 |
17 | TraesCS5A01G291500 | chr2A | 606528045 | 606528723 | 678 | True | 1064.000000 | 1064 | 95.000000 | 1 | 678 | 1 | chr2A.!!$R2 | 677 |
18 | TraesCS5A01G291500 | chr7D | 501027297 | 501027963 | 666 | True | 773.000000 | 773 | 87.630000 | 10 | 677 | 1 | chr7D.!!$R2 | 667 |
19 | TraesCS5A01G291500 | chr4A | 603832448 | 603833114 | 666 | True | 739.000000 | 739 | 86.736000 | 10 | 677 | 1 | chr4A.!!$R2 | 667 |
20 | TraesCS5A01G291500 | chr1D | 454501677 | 454502222 | 545 | False | 327.000000 | 579 | 91.081500 | 5988 | 6616 | 2 | chr1D.!!$F1 | 628 |
21 | TraesCS5A01G291500 | chr3A | 33211918 | 33212553 | 635 | False | 508.000000 | 508 | 81.250000 | 1 | 634 | 1 | chr3A.!!$F1 | 633 |
22 | TraesCS5A01G291500 | chr2D | 480579123 | 480579743 | 620 | True | 401.000000 | 401 | 78.571000 | 52 | 675 | 1 | chr2D.!!$R2 | 623 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
709 | 719 | 0.036010 | GCACTTTAGCTGCCTCCAGA | 60.036 | 55.000 | 0.00 | 0.00 | 41.77 | 3.86 | F |
1754 | 1781 | 0.181587 | TGGTTTCGGAGGCTGTTTGA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 | F |
2549 | 2602 | 0.171455 | AATCAGTCCAGTCGACGAGC | 59.829 | 55.000 | 10.46 | 2.21 | 46.92 | 5.03 | F |
3068 | 3121 | 0.170339 | CCCAAAGCGGTCGATTTTCC | 59.830 | 55.000 | 3.79 | 0.00 | 30.80 | 3.13 | F |
3120 | 3173 | 0.174162 | GTCGCCTTAGGGACGCTTTA | 59.826 | 55.000 | 0.00 | 0.00 | 44.82 | 1.85 | F |
3121 | 3174 | 0.896923 | TCGCCTTAGGGACGCTTTAA | 59.103 | 50.000 | 0.00 | 0.00 | 34.09 | 1.52 | F |
3849 | 3904 | 0.965439 | TTACAGGCATTGGTGTTGGC | 59.035 | 50.000 | 0.00 | 0.00 | 39.77 | 4.52 | F |
4887 | 5125 | 1.532316 | AAATGGTGCTGCTGCTGGT | 60.532 | 52.632 | 17.00 | 0.00 | 40.48 | 4.00 | F |
5994 | 6254 | 1.135915 | CTATGCTCTTCAGGTGCGTCT | 59.864 | 52.381 | 0.00 | 0.00 | 37.26 | 4.18 | F |
6030 | 6290 | 1.348064 | ACAACGTGGGAGGAAGATGA | 58.652 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 | F |
6808 | 7187 | 1.546323 | CCACAGGTCCTGCAACATCTT | 60.546 | 52.381 | 19.40 | 0.00 | 34.37 | 2.40 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2530 | 2583 | 0.171455 | GCTCGTCGACTGGACTGATT | 59.829 | 55.000 | 14.70 | 0.00 | 43.79 | 2.57 | R |
3049 | 3102 | 0.170339 | GGAAAATCGACCGCTTTGGG | 59.830 | 55.000 | 0.00 | 0.00 | 44.64 | 4.12 | R |
4321 | 4390 | 0.322322 | CAACACCATTGGCAAGCCAT | 59.678 | 50.000 | 15.49 | 2.48 | 46.64 | 4.40 | R |
4323 | 4392 | 1.668793 | GCAACACCATTGGCAAGCC | 60.669 | 57.895 | 5.96 | 3.61 | 0.00 | 4.35 | R |
4324 | 4393 | 1.668793 | GGCAACACCATTGGCAAGC | 60.669 | 57.895 | 5.96 | 1.12 | 43.47 | 4.01 | R |
4926 | 5164 | 6.412362 | ACTAAGAAGAACTGACACATGAGT | 57.588 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 | R |
5144 | 5382 | 0.756294 | CACACACACACACCTCCCTA | 59.244 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 | R |
6051 | 6311 | 0.034616 | CAGCAAATTCCCCCGCAAAA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 | R |
7952 | 8468 | 5.193679 | ACAAGAACAAGAGTAAGTTTGGCT | 58.806 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 | R |
7953 | 8469 | 5.500645 | ACAAGAACAAGAGTAAGTTTGGC | 57.499 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 | R |
8800 | 9510 | 0.459489 | GGGCTGAGAGACACTGCTAG | 59.541 | 60.000 | 0.00 | 0.00 | 33.80 | 3.42 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
223 | 224 | 0.677731 | CCGAGGCAGGAGAATTGCAA | 60.678 | 55.000 | 0.00 | 0.00 | 43.28 | 4.08 |
250 | 251 | 0.036388 | AGATTTTCTTCGAGCGGCCA | 60.036 | 50.000 | 2.24 | 0.00 | 0.00 | 5.36 |
486 | 487 | 4.570663 | CGGACGTCGAGCCCATCC | 62.571 | 72.222 | 9.92 | 0.00 | 42.43 | 3.51 |
549 | 554 | 2.597578 | GGAGGTTCCCTAAGCCAAAA | 57.402 | 50.000 | 0.00 | 0.00 | 31.76 | 2.44 |
679 | 689 | 4.279326 | CCTAACGAGAGGGGAGGG | 57.721 | 66.667 | 0.00 | 0.00 | 32.39 | 4.30 |
680 | 690 | 2.134933 | CCTAACGAGAGGGGAGGGC | 61.135 | 68.421 | 0.00 | 0.00 | 32.39 | 5.19 |
681 | 691 | 2.441532 | TAACGAGAGGGGAGGGCG | 60.442 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
699 | 709 | 3.890674 | CCCGACAGGCACTTTAGC | 58.109 | 61.111 | 0.00 | 0.00 | 34.60 | 3.09 |
700 | 710 | 1.296715 | CCCGACAGGCACTTTAGCT | 59.703 | 57.895 | 0.00 | 0.00 | 34.60 | 3.32 |
701 | 711 | 1.021390 | CCCGACAGGCACTTTAGCTG | 61.021 | 60.000 | 0.00 | 0.00 | 34.60 | 4.24 |
702 | 712 | 1.639298 | CCGACAGGCACTTTAGCTGC | 61.639 | 60.000 | 0.00 | 0.00 | 34.60 | 5.25 |
707 | 717 | 4.722193 | GCACTTTAGCTGCCTCCA | 57.278 | 55.556 | 0.00 | 0.00 | 0.00 | 3.86 |
708 | 718 | 2.475666 | GCACTTTAGCTGCCTCCAG | 58.524 | 57.895 | 0.00 | 0.00 | 42.13 | 3.86 |
709 | 719 | 0.036010 | GCACTTTAGCTGCCTCCAGA | 60.036 | 55.000 | 0.00 | 0.00 | 41.77 | 3.86 |
710 | 720 | 1.407989 | GCACTTTAGCTGCCTCCAGAT | 60.408 | 52.381 | 0.00 | 0.00 | 41.77 | 2.90 |
711 | 721 | 2.158900 | GCACTTTAGCTGCCTCCAGATA | 60.159 | 50.000 | 0.00 | 0.00 | 41.77 | 1.98 |
712 | 722 | 3.726607 | CACTTTAGCTGCCTCCAGATAG | 58.273 | 50.000 | 0.00 | 0.00 | 40.66 | 2.08 |
713 | 723 | 3.386078 | CACTTTAGCTGCCTCCAGATAGA | 59.614 | 47.826 | 0.00 | 0.00 | 40.66 | 1.98 |
714 | 724 | 4.040217 | CACTTTAGCTGCCTCCAGATAGAT | 59.960 | 45.833 | 0.00 | 0.00 | 40.66 | 1.98 |
715 | 725 | 5.244851 | CACTTTAGCTGCCTCCAGATAGATA | 59.755 | 44.000 | 0.00 | 0.00 | 40.66 | 1.98 |
716 | 726 | 5.480073 | ACTTTAGCTGCCTCCAGATAGATAG | 59.520 | 44.000 | 0.00 | 0.00 | 40.66 | 2.08 |
717 | 727 | 2.818921 | AGCTGCCTCCAGATAGATAGG | 58.181 | 52.381 | 0.00 | 0.00 | 41.77 | 2.57 |
718 | 728 | 1.830477 | GCTGCCTCCAGATAGATAGGG | 59.170 | 57.143 | 0.00 | 0.00 | 41.77 | 3.53 |
719 | 729 | 2.825072 | GCTGCCTCCAGATAGATAGGGT | 60.825 | 54.545 | 0.00 | 0.00 | 41.77 | 4.34 |
720 | 730 | 3.515562 | CTGCCTCCAGATAGATAGGGTT | 58.484 | 50.000 | 0.00 | 0.00 | 41.77 | 4.11 |
721 | 731 | 3.511477 | TGCCTCCAGATAGATAGGGTTC | 58.489 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
722 | 732 | 2.835156 | GCCTCCAGATAGATAGGGTTCC | 59.165 | 54.545 | 0.00 | 0.00 | 0.00 | 3.62 |
723 | 733 | 3.445987 | CCTCCAGATAGATAGGGTTCCC | 58.554 | 54.545 | 0.00 | 0.00 | 0.00 | 3.97 |
724 | 734 | 3.093057 | CTCCAGATAGATAGGGTTCCCG | 58.907 | 54.545 | 1.91 | 0.00 | 0.00 | 5.14 |
725 | 735 | 2.720254 | TCCAGATAGATAGGGTTCCCGA | 59.280 | 50.000 | 1.91 | 0.00 | 0.00 | 5.14 |
726 | 736 | 3.141460 | TCCAGATAGATAGGGTTCCCGAA | 59.859 | 47.826 | 1.91 | 0.00 | 0.00 | 4.30 |
727 | 737 | 4.097418 | CCAGATAGATAGGGTTCCCGAAT | 58.903 | 47.826 | 1.91 | 0.67 | 0.00 | 3.34 |
728 | 738 | 5.015924 | TCCAGATAGATAGGGTTCCCGAATA | 59.984 | 44.000 | 1.91 | 0.00 | 0.00 | 1.75 |
729 | 739 | 5.900123 | CCAGATAGATAGGGTTCCCGAATAT | 59.100 | 44.000 | 1.91 | 1.39 | 0.00 | 1.28 |
730 | 740 | 6.183360 | CCAGATAGATAGGGTTCCCGAATATG | 60.183 | 46.154 | 1.91 | 1.72 | 0.00 | 1.78 |
731 | 741 | 6.607600 | CAGATAGATAGGGTTCCCGAATATGA | 59.392 | 42.308 | 1.91 | 0.00 | 0.00 | 2.15 |
732 | 742 | 7.124298 | CAGATAGATAGGGTTCCCGAATATGAA | 59.876 | 40.741 | 1.91 | 0.00 | 0.00 | 2.57 |
733 | 743 | 5.746990 | AGATAGGGTTCCCGAATATGAAG | 57.253 | 43.478 | 1.91 | 0.00 | 0.00 | 3.02 |
734 | 744 | 5.403512 | AGATAGGGTTCCCGAATATGAAGA | 58.596 | 41.667 | 1.91 | 0.00 | 0.00 | 2.87 |
735 | 745 | 5.482175 | AGATAGGGTTCCCGAATATGAAGAG | 59.518 | 44.000 | 1.91 | 0.00 | 0.00 | 2.85 |
736 | 746 | 2.706190 | AGGGTTCCCGAATATGAAGAGG | 59.294 | 50.000 | 1.91 | 0.00 | 0.00 | 3.69 |
737 | 747 | 2.495084 | GGTTCCCGAATATGAAGAGGC | 58.505 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
738 | 748 | 2.495084 | GTTCCCGAATATGAAGAGGCC | 58.505 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
739 | 749 | 0.679505 | TCCCGAATATGAAGAGGCCG | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
740 | 750 | 0.393077 | CCCGAATATGAAGAGGCCGT | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
741 | 751 | 1.202651 | CCCGAATATGAAGAGGCCGTT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
742 | 752 | 2.561569 | CCGAATATGAAGAGGCCGTTT | 58.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
743 | 753 | 2.943033 | CCGAATATGAAGAGGCCGTTTT | 59.057 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
744 | 754 | 3.377172 | CCGAATATGAAGAGGCCGTTTTT | 59.623 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
812 | 822 | 3.967332 | AATCTTGGTGGGCTCATTTTG | 57.033 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
817 | 827 | 1.337118 | GGTGGGCTCATTTTGAACCA | 58.663 | 50.000 | 0.00 | 0.00 | 34.38 | 3.67 |
862 | 886 | 5.813157 | GGCCACTCTGTCTCTAAAAAGATAC | 59.187 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
863 | 887 | 5.517054 | GCCACTCTGTCTCTAAAAAGATACG | 59.483 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
864 | 888 | 6.622549 | CCACTCTGTCTCTAAAAAGATACGT | 58.377 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
865 | 889 | 7.627939 | GCCACTCTGTCTCTAAAAAGATACGTA | 60.628 | 40.741 | 0.00 | 0.00 | 0.00 | 3.57 |
866 | 890 | 7.697291 | CCACTCTGTCTCTAAAAAGATACGTAC | 59.303 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
867 | 891 | 7.425882 | CACTCTGTCTCTAAAAAGATACGTACG | 59.574 | 40.741 | 15.01 | 15.01 | 0.00 | 3.67 |
868 | 892 | 7.118971 | ACTCTGTCTCTAAAAAGATACGTACGT | 59.881 | 37.037 | 25.98 | 25.98 | 0.00 | 3.57 |
869 | 893 | 8.479313 | TCTGTCTCTAAAAAGATACGTACGTA | 57.521 | 34.615 | 28.62 | 28.62 | 34.87 | 3.57 |
870 | 894 | 8.383619 | TCTGTCTCTAAAAAGATACGTACGTAC | 58.616 | 37.037 | 28.99 | 21.22 | 33.01 | 3.67 |
871 | 895 | 8.256611 | TGTCTCTAAAAAGATACGTACGTACT | 57.743 | 34.615 | 28.99 | 22.85 | 33.01 | 2.73 |
872 | 896 | 8.171196 | TGTCTCTAAAAAGATACGTACGTACTG | 58.829 | 37.037 | 28.99 | 17.55 | 33.01 | 2.74 |
873 | 897 | 8.171840 | GTCTCTAAAAAGATACGTACGTACTGT | 58.828 | 37.037 | 28.99 | 19.22 | 33.01 | 3.55 |
874 | 898 | 9.366216 | TCTCTAAAAAGATACGTACGTACTGTA | 57.634 | 33.333 | 28.99 | 22.80 | 33.01 | 2.74 |
888 | 912 | 9.502145 | CGTACGTACTGTATAAGTTAATTTGGA | 57.498 | 33.333 | 22.55 | 0.00 | 40.56 | 3.53 |
922 | 946 | 3.548818 | GGCCTACAAAGCATCATTAAGCG | 60.549 | 47.826 | 0.00 | 0.00 | 35.48 | 4.68 |
1011 | 1036 | 3.016613 | TATCCACGCCCTCCTCCCA | 62.017 | 63.158 | 0.00 | 0.00 | 0.00 | 4.37 |
1072 | 1097 | 2.501610 | GTCTGCGTCTCATCCCCC | 59.498 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
1278 | 1303 | 1.014352 | CGATCATTTCCCCACGTTCC | 58.986 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1279 | 1304 | 1.389555 | GATCATTTCCCCACGTTCCC | 58.610 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
1454 | 1479 | 2.978824 | GCGTGGCAGAACCCTAGA | 59.021 | 61.111 | 0.00 | 0.00 | 37.83 | 2.43 |
1499 | 1524 | 0.249398 | GGCCTGTAATGACGTGGTCT | 59.751 | 55.000 | 0.00 | 0.00 | 33.15 | 3.85 |
1503 | 1528 | 2.263077 | CTGTAATGACGTGGTCTGCTC | 58.737 | 52.381 | 0.00 | 0.00 | 33.15 | 4.26 |
1547 | 1572 | 1.757682 | TTTGACGGGCTGTTTTGACT | 58.242 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1548 | 1573 | 1.305201 | TTGACGGGCTGTTTTGACTC | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1563 | 1588 | 1.719725 | GACTCGAGATCGGCTGCTGA | 61.720 | 60.000 | 21.68 | 14.42 | 40.29 | 4.26 |
1570 | 1595 | 3.304726 | CGAGATCGGCTGCTGATTAGTTA | 60.305 | 47.826 | 23.77 | 0.00 | 35.37 | 2.24 |
1574 | 1599 | 6.940739 | AGATCGGCTGCTGATTAGTTATATT | 58.059 | 36.000 | 23.77 | 0.00 | 28.51 | 1.28 |
1575 | 1600 | 8.067751 | AGATCGGCTGCTGATTAGTTATATTA | 57.932 | 34.615 | 23.77 | 0.00 | 28.51 | 0.98 |
1576 | 1601 | 7.976734 | AGATCGGCTGCTGATTAGTTATATTAC | 59.023 | 37.037 | 23.77 | 7.67 | 28.51 | 1.89 |
1577 | 1602 | 6.988522 | TCGGCTGCTGATTAGTTATATTACA | 58.011 | 36.000 | 7.16 | 0.00 | 0.00 | 2.41 |
1578 | 1603 | 7.611770 | TCGGCTGCTGATTAGTTATATTACAT | 58.388 | 34.615 | 7.16 | 0.00 | 0.00 | 2.29 |
1579 | 1604 | 7.759886 | TCGGCTGCTGATTAGTTATATTACATC | 59.240 | 37.037 | 7.16 | 0.00 | 0.00 | 3.06 |
1609 | 1634 | 2.239201 | GGCGATTACGACTTTTGTTGC | 58.761 | 47.619 | 0.00 | 0.00 | 45.04 | 4.17 |
1617 | 1642 | 7.322699 | CGATTACGACTTTTGTTGCTGTTATTT | 59.677 | 33.333 | 0.00 | 0.00 | 42.66 | 1.40 |
1618 | 1643 | 9.601971 | GATTACGACTTTTGTTGCTGTTATTTA | 57.398 | 29.630 | 0.00 | 0.00 | 37.33 | 1.40 |
1620 | 1645 | 9.953697 | TTACGACTTTTGTTGCTGTTATTTATT | 57.046 | 25.926 | 0.00 | 0.00 | 37.33 | 1.40 |
1650 | 1677 | 1.674359 | TGGTGACACAGCGATTGTTT | 58.326 | 45.000 | 8.08 | 0.00 | 38.16 | 2.83 |
1652 | 1679 | 3.206964 | TGGTGACACAGCGATTGTTTTA | 58.793 | 40.909 | 8.08 | 0.00 | 38.16 | 1.52 |
1661 | 1688 | 3.425193 | CAGCGATTGTTTTAGTTTGGTGC | 59.575 | 43.478 | 0.00 | 0.00 | 0.00 | 5.01 |
1730 | 1757 | 7.926674 | ATGTAGTTTTGTCATGATGTGATGA | 57.073 | 32.000 | 0.00 | 0.00 | 39.48 | 2.92 |
1731 | 1758 | 7.742556 | TGTAGTTTTGTCATGATGTGATGAA | 57.257 | 32.000 | 0.00 | 0.00 | 39.48 | 2.57 |
1732 | 1759 | 7.584108 | TGTAGTTTTGTCATGATGTGATGAAC | 58.416 | 34.615 | 0.00 | 0.00 | 39.48 | 3.18 |
1733 | 1760 | 6.889301 | AGTTTTGTCATGATGTGATGAACT | 57.111 | 33.333 | 0.00 | 0.76 | 39.48 | 3.01 |
1734 | 1761 | 7.281040 | AGTTTTGTCATGATGTGATGAACTT | 57.719 | 32.000 | 0.00 | 0.00 | 39.48 | 2.66 |
1735 | 1762 | 7.719483 | AGTTTTGTCATGATGTGATGAACTTT | 58.281 | 30.769 | 0.00 | 0.00 | 39.48 | 2.66 |
1736 | 1763 | 7.650504 | AGTTTTGTCATGATGTGATGAACTTTG | 59.349 | 33.333 | 0.00 | 0.00 | 39.48 | 2.77 |
1737 | 1764 | 5.632244 | TGTCATGATGTGATGAACTTTGG | 57.368 | 39.130 | 0.00 | 0.00 | 39.48 | 3.28 |
1738 | 1765 | 5.072055 | TGTCATGATGTGATGAACTTTGGT | 58.928 | 37.500 | 0.00 | 0.00 | 39.48 | 3.67 |
1739 | 1766 | 5.535783 | TGTCATGATGTGATGAACTTTGGTT | 59.464 | 36.000 | 0.00 | 0.00 | 39.48 | 3.67 |
1740 | 1767 | 6.040729 | TGTCATGATGTGATGAACTTTGGTTT | 59.959 | 34.615 | 0.00 | 0.00 | 39.48 | 3.27 |
1741 | 1768 | 6.583806 | GTCATGATGTGATGAACTTTGGTTTC | 59.416 | 38.462 | 0.00 | 0.00 | 39.48 | 2.78 |
1742 | 1769 | 5.107109 | TGATGTGATGAACTTTGGTTTCG | 57.893 | 39.130 | 0.00 | 0.00 | 35.58 | 3.46 |
1743 | 1770 | 3.980646 | TGTGATGAACTTTGGTTTCGG | 57.019 | 42.857 | 0.00 | 0.00 | 35.58 | 4.30 |
1744 | 1771 | 3.546724 | TGTGATGAACTTTGGTTTCGGA | 58.453 | 40.909 | 0.00 | 0.00 | 35.58 | 4.55 |
1745 | 1772 | 3.563808 | TGTGATGAACTTTGGTTTCGGAG | 59.436 | 43.478 | 0.00 | 0.00 | 35.58 | 4.63 |
1746 | 1773 | 3.058224 | GTGATGAACTTTGGTTTCGGAGG | 60.058 | 47.826 | 0.00 | 0.00 | 35.58 | 4.30 |
1747 | 1774 | 1.314730 | TGAACTTTGGTTTCGGAGGC | 58.685 | 50.000 | 0.00 | 0.00 | 35.58 | 4.70 |
1748 | 1775 | 1.133915 | TGAACTTTGGTTTCGGAGGCT | 60.134 | 47.619 | 0.00 | 0.00 | 35.58 | 4.58 |
1749 | 1776 | 1.266989 | GAACTTTGGTTTCGGAGGCTG | 59.733 | 52.381 | 0.00 | 0.00 | 35.58 | 4.85 |
1750 | 1777 | 0.182775 | ACTTTGGTTTCGGAGGCTGT | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1751 | 1778 | 1.318576 | CTTTGGTTTCGGAGGCTGTT | 58.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1752 | 1779 | 1.681264 | CTTTGGTTTCGGAGGCTGTTT | 59.319 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1753 | 1780 | 1.028905 | TTGGTTTCGGAGGCTGTTTG | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1754 | 1781 | 0.181587 | TGGTTTCGGAGGCTGTTTGA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1755 | 1782 | 1.202879 | TGGTTTCGGAGGCTGTTTGAT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1756 | 1783 | 2.039216 | TGGTTTCGGAGGCTGTTTGATA | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
1757 | 1784 | 3.078837 | GGTTTCGGAGGCTGTTTGATAA | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
1758 | 1785 | 3.119955 | GGTTTCGGAGGCTGTTTGATAAC | 60.120 | 47.826 | 0.00 | 0.00 | 34.75 | 1.89 |
1759 | 1786 | 3.695830 | TTCGGAGGCTGTTTGATAACT | 57.304 | 42.857 | 0.00 | 0.00 | 35.24 | 2.24 |
1760 | 1787 | 4.811969 | TTCGGAGGCTGTTTGATAACTA | 57.188 | 40.909 | 0.00 | 0.00 | 35.24 | 2.24 |
1761 | 1788 | 4.119442 | TCGGAGGCTGTTTGATAACTAC | 57.881 | 45.455 | 0.00 | 0.00 | 35.24 | 2.73 |
1762 | 1789 | 3.767673 | TCGGAGGCTGTTTGATAACTACT | 59.232 | 43.478 | 0.00 | 0.00 | 35.24 | 2.57 |
1763 | 1790 | 4.222145 | TCGGAGGCTGTTTGATAACTACTT | 59.778 | 41.667 | 0.00 | 0.00 | 35.24 | 2.24 |
1764 | 1791 | 4.935808 | CGGAGGCTGTTTGATAACTACTTT | 59.064 | 41.667 | 0.00 | 0.00 | 35.24 | 2.66 |
1765 | 1792 | 5.411669 | CGGAGGCTGTTTGATAACTACTTTT | 59.588 | 40.000 | 0.00 | 0.00 | 35.24 | 2.27 |
1766 | 1793 | 6.592607 | CGGAGGCTGTTTGATAACTACTTTTA | 59.407 | 38.462 | 0.00 | 0.00 | 35.24 | 1.52 |
1767 | 1794 | 7.201530 | CGGAGGCTGTTTGATAACTACTTTTAG | 60.202 | 40.741 | 0.00 | 0.00 | 35.24 | 1.85 |
1768 | 1795 | 7.379098 | AGGCTGTTTGATAACTACTTTTAGC | 57.621 | 36.000 | 0.00 | 0.00 | 35.24 | 3.09 |
1769 | 1796 | 7.168905 | AGGCTGTTTGATAACTACTTTTAGCT | 58.831 | 34.615 | 0.00 | 0.00 | 35.24 | 3.32 |
1770 | 1797 | 7.665974 | AGGCTGTTTGATAACTACTTTTAGCTT | 59.334 | 33.333 | 0.00 | 0.00 | 35.24 | 3.74 |
1771 | 1798 | 8.297426 | GGCTGTTTGATAACTACTTTTAGCTTT | 58.703 | 33.333 | 0.00 | 0.00 | 35.24 | 3.51 |
1888 | 1918 | 7.934120 | GTGGTTAGTGGCTATCTTAGAATTGAT | 59.066 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1897 | 1927 | 7.446625 | GGCTATCTTAGAATTGATGTCACCATT | 59.553 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1910 | 1940 | 5.155278 | TGTCACCATTGTTTCCTACGTAT | 57.845 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
1946 | 1976 | 0.904649 | TGTGACTACCTGCTGATGGG | 59.095 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1997 | 2027 | 2.640184 | GCCGGTTGCTTTATCCTTAGT | 58.360 | 47.619 | 1.90 | 0.00 | 36.87 | 2.24 |
2144 | 2174 | 5.064558 | TGACGGTAGACTTCCTCATAGATC | 58.935 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
2202 | 2236 | 7.625498 | TGGGGTTCATATATCATGTGACTTA | 57.375 | 36.000 | 0.00 | 0.00 | 29.73 | 2.24 |
2226 | 2260 | 3.895232 | TGGCAAGACATTCTCCTAGTC | 57.105 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
2227 | 2261 | 2.501723 | TGGCAAGACATTCTCCTAGTCC | 59.498 | 50.000 | 0.00 | 0.00 | 32.82 | 3.85 |
2265 | 2299 | 5.431765 | AGTATCACCAAAGAACTAGCCATG | 58.568 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2266 | 2300 | 3.071874 | TCACCAAAGAACTAGCCATGG | 57.928 | 47.619 | 7.63 | 7.63 | 0.00 | 3.66 |
2313 | 2347 | 1.741706 | CATGTGCCAGAACCATGAGTC | 59.258 | 52.381 | 0.00 | 0.00 | 38.56 | 3.36 |
2319 | 2353 | 1.021390 | CAGAACCATGAGTCGGTGGC | 61.021 | 60.000 | 12.85 | 0.55 | 39.13 | 5.01 |
2323 | 2358 | 2.573869 | CATGAGTCGGTGGCGAGT | 59.426 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
2333 | 2368 | 1.095807 | GGTGGCGAGTTCTTATGGGC | 61.096 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2341 | 2376 | 3.536570 | GAGTTCTTATGGGCTTCACCTC | 58.463 | 50.000 | 0.00 | 0.00 | 39.10 | 3.85 |
2342 | 2377 | 3.185455 | AGTTCTTATGGGCTTCACCTCT | 58.815 | 45.455 | 0.00 | 0.00 | 39.10 | 3.69 |
2384 | 2419 | 3.381045 | GGACTAAAGGCTTTGTTGTTGC | 58.619 | 45.455 | 22.32 | 7.49 | 0.00 | 4.17 |
2503 | 2556 | 3.173151 | ACTGAGTGACCATGTGTCCATA | 58.827 | 45.455 | 10.60 | 0.00 | 43.78 | 2.74 |
2504 | 2557 | 3.196469 | ACTGAGTGACCATGTGTCCATAG | 59.804 | 47.826 | 10.60 | 7.29 | 43.78 | 2.23 |
2505 | 2558 | 3.173151 | TGAGTGACCATGTGTCCATAGT | 58.827 | 45.455 | 10.60 | 0.00 | 43.78 | 2.12 |
2506 | 2559 | 4.349365 | TGAGTGACCATGTGTCCATAGTA | 58.651 | 43.478 | 10.60 | 0.00 | 43.78 | 1.82 |
2507 | 2560 | 4.962362 | TGAGTGACCATGTGTCCATAGTAT | 59.038 | 41.667 | 10.60 | 0.00 | 43.78 | 2.12 |
2508 | 2561 | 6.133356 | TGAGTGACCATGTGTCCATAGTATA | 58.867 | 40.000 | 10.60 | 0.00 | 43.78 | 1.47 |
2509 | 2562 | 6.265422 | TGAGTGACCATGTGTCCATAGTATAG | 59.735 | 42.308 | 10.60 | 0.00 | 43.78 | 1.31 |
2510 | 2563 | 5.011125 | AGTGACCATGTGTCCATAGTATAGC | 59.989 | 44.000 | 10.60 | 0.00 | 43.78 | 2.97 |
2511 | 2564 | 5.011125 | GTGACCATGTGTCCATAGTATAGCT | 59.989 | 44.000 | 10.60 | 0.00 | 43.78 | 3.32 |
2512 | 2565 | 5.011023 | TGACCATGTGTCCATAGTATAGCTG | 59.989 | 44.000 | 0.00 | 0.00 | 43.78 | 4.24 |
2513 | 2566 | 4.284490 | ACCATGTGTCCATAGTATAGCTGG | 59.716 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
2514 | 2567 | 4.248859 | CATGTGTCCATAGTATAGCTGGC | 58.751 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
2515 | 2568 | 2.632996 | TGTGTCCATAGTATAGCTGGCC | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2516 | 2569 | 2.028020 | GTGTCCATAGTATAGCTGGCCC | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 5.80 |
2517 | 2570 | 2.257207 | GTCCATAGTATAGCTGGCCCA | 58.743 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2518 | 2571 | 2.637872 | GTCCATAGTATAGCTGGCCCAA | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2519 | 2572 | 2.637872 | TCCATAGTATAGCTGGCCCAAC | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2520 | 2573 | 2.371841 | CCATAGTATAGCTGGCCCAACA | 59.628 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2521 | 2574 | 3.557898 | CCATAGTATAGCTGGCCCAACAG | 60.558 | 52.174 | 0.00 | 0.00 | 41.41 | 3.16 |
2522 | 2575 | 0.839946 | AGTATAGCTGGCCCAACAGG | 59.160 | 55.000 | 0.00 | 0.00 | 38.90 | 4.00 |
2539 | 2592 | 4.424711 | GCCGGGCCAATCAGTCCA | 62.425 | 66.667 | 8.12 | 0.00 | 0.00 | 4.02 |
2540 | 2593 | 2.124570 | CCGGGCCAATCAGTCCAG | 60.125 | 66.667 | 4.39 | 0.00 | 0.00 | 3.86 |
2541 | 2594 | 2.671070 | CGGGCCAATCAGTCCAGT | 59.329 | 61.111 | 4.39 | 0.00 | 0.00 | 4.00 |
2542 | 2595 | 1.450312 | CGGGCCAATCAGTCCAGTC | 60.450 | 63.158 | 4.39 | 0.00 | 0.00 | 3.51 |
2543 | 2596 | 1.450312 | GGGCCAATCAGTCCAGTCG | 60.450 | 63.158 | 4.39 | 0.00 | 0.00 | 4.18 |
2544 | 2597 | 1.596934 | GGCCAATCAGTCCAGTCGA | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
2545 | 2598 | 0.741221 | GGCCAATCAGTCCAGTCGAC | 60.741 | 60.000 | 7.70 | 7.70 | 42.32 | 4.20 |
2546 | 2599 | 1.078759 | GCCAATCAGTCCAGTCGACG | 61.079 | 60.000 | 10.46 | 5.16 | 46.92 | 5.12 |
2547 | 2600 | 0.526211 | CCAATCAGTCCAGTCGACGA | 59.474 | 55.000 | 10.46 | 0.00 | 46.92 | 4.20 |
2548 | 2601 | 1.468224 | CCAATCAGTCCAGTCGACGAG | 60.468 | 57.143 | 10.46 | 7.00 | 46.92 | 4.18 |
2549 | 2602 | 0.171455 | AATCAGTCCAGTCGACGAGC | 59.829 | 55.000 | 10.46 | 2.21 | 46.92 | 5.03 |
2550 | 2603 | 0.960861 | ATCAGTCCAGTCGACGAGCA | 60.961 | 55.000 | 10.46 | 0.00 | 46.92 | 4.26 |
2551 | 2604 | 0.960861 | TCAGTCCAGTCGACGAGCAT | 60.961 | 55.000 | 10.46 | 0.00 | 46.92 | 3.79 |
2552 | 2605 | 0.799917 | CAGTCCAGTCGACGAGCATG | 60.800 | 60.000 | 10.46 | 2.08 | 46.92 | 4.06 |
2553 | 2606 | 2.161486 | GTCCAGTCGACGAGCATGC | 61.161 | 63.158 | 10.51 | 10.51 | 0.00 | 4.06 |
2554 | 2607 | 2.887568 | CCAGTCGACGAGCATGCC | 60.888 | 66.667 | 15.66 | 4.99 | 0.00 | 4.40 |
2555 | 2608 | 2.125952 | CAGTCGACGAGCATGCCA | 60.126 | 61.111 | 15.66 | 0.00 | 0.00 | 4.92 |
2556 | 2609 | 2.163390 | CAGTCGACGAGCATGCCAG | 61.163 | 63.158 | 15.66 | 11.43 | 0.00 | 4.85 |
2557 | 2610 | 3.558411 | GTCGACGAGCATGCCAGC | 61.558 | 66.667 | 15.66 | 3.18 | 0.00 | 4.85 |
2558 | 2611 | 4.067913 | TCGACGAGCATGCCAGCA | 62.068 | 61.111 | 15.66 | 0.00 | 36.85 | 4.41 |
2559 | 2612 | 3.857854 | CGACGAGCATGCCAGCAC | 61.858 | 66.667 | 15.66 | 5.97 | 36.85 | 4.40 |
2659 | 2712 | 4.222105 | GGCACGGCCCGTTTATTA | 57.778 | 55.556 | 5.76 | 0.00 | 44.06 | 0.98 |
2660 | 2713 | 1.723273 | GGCACGGCCCGTTTATTAC | 59.277 | 57.895 | 5.76 | 0.00 | 44.06 | 1.89 |
2661 | 2714 | 0.745486 | GGCACGGCCCGTTTATTACT | 60.745 | 55.000 | 5.76 | 0.00 | 44.06 | 2.24 |
2662 | 2715 | 1.089112 | GCACGGCCCGTTTATTACTT | 58.911 | 50.000 | 5.76 | 0.00 | 38.32 | 2.24 |
2663 | 2716 | 2.278854 | GCACGGCCCGTTTATTACTTA | 58.721 | 47.619 | 5.76 | 0.00 | 38.32 | 2.24 |
2664 | 2717 | 2.874086 | GCACGGCCCGTTTATTACTTAT | 59.126 | 45.455 | 5.76 | 0.00 | 38.32 | 1.73 |
2665 | 2718 | 3.313249 | GCACGGCCCGTTTATTACTTATT | 59.687 | 43.478 | 5.76 | 0.00 | 38.32 | 1.40 |
2666 | 2719 | 4.511082 | GCACGGCCCGTTTATTACTTATTA | 59.489 | 41.667 | 5.76 | 0.00 | 38.32 | 0.98 |
2667 | 2720 | 5.179929 | GCACGGCCCGTTTATTACTTATTAT | 59.820 | 40.000 | 5.76 | 0.00 | 38.32 | 1.28 |
2668 | 2721 | 6.293571 | GCACGGCCCGTTTATTACTTATTATT | 60.294 | 38.462 | 5.76 | 0.00 | 38.32 | 1.40 |
2669 | 2722 | 7.641760 | CACGGCCCGTTTATTACTTATTATTT | 58.358 | 34.615 | 5.76 | 0.00 | 38.32 | 1.40 |
2670 | 2723 | 8.130469 | CACGGCCCGTTTATTACTTATTATTTT | 58.870 | 33.333 | 5.76 | 0.00 | 38.32 | 1.82 |
2671 | 2724 | 8.685427 | ACGGCCCGTTTATTACTTATTATTTTT | 58.315 | 29.630 | 1.02 | 0.00 | 36.35 | 1.94 |
2704 | 2757 | 7.938140 | TTTTTATATATATGACCAGCTGGCC | 57.062 | 36.000 | 33.06 | 23.59 | 39.32 | 5.36 |
2705 | 2758 | 5.630415 | TTATATATATGACCAGCTGGCCC | 57.370 | 43.478 | 33.06 | 23.84 | 39.32 | 5.80 |
2706 | 2759 | 0.615331 | ATATATGACCAGCTGGCCCG | 59.385 | 55.000 | 33.06 | 9.57 | 39.32 | 6.13 |
2707 | 2760 | 0.762842 | TATATGACCAGCTGGCCCGT | 60.763 | 55.000 | 33.06 | 25.51 | 39.32 | 5.28 |
2708 | 2761 | 2.329539 | ATATGACCAGCTGGCCCGTG | 62.330 | 60.000 | 33.06 | 8.35 | 39.32 | 4.94 |
2740 | 2793 | 3.612251 | CCCATTTGGCCAGCTCTG | 58.388 | 61.111 | 5.11 | 2.11 | 0.00 | 3.35 |
2783 | 2836 | 7.450074 | TGTATTGGCACTATTTCGGAGAATAT | 58.550 | 34.615 | 0.00 | 0.00 | 45.90 | 1.28 |
2889 | 2942 | 7.194278 | TCGCTATTACTTGAGTACATCAGAAC | 58.806 | 38.462 | 0.00 | 0.00 | 39.68 | 3.01 |
2936 | 2989 | 4.834496 | AGTGGTCATTGGTGTGATTGATTT | 59.166 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2948 | 3001 | 9.636879 | TGGTGTGATTGATTTTGTATGTTATTG | 57.363 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2949 | 3002 | 8.594687 | GGTGTGATTGATTTTGTATGTTATTGC | 58.405 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2950 | 3003 | 8.594687 | GTGTGATTGATTTTGTATGTTATTGCC | 58.405 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
2951 | 3004 | 8.530311 | TGTGATTGATTTTGTATGTTATTGCCT | 58.470 | 29.630 | 0.00 | 0.00 | 0.00 | 4.75 |
2952 | 3005 | 9.023967 | GTGATTGATTTTGTATGTTATTGCCTC | 57.976 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
2953 | 3006 | 8.196771 | TGATTGATTTTGTATGTTATTGCCTCC | 58.803 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
2954 | 3007 | 7.716799 | TTGATTTTGTATGTTATTGCCTCCT | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2955 | 3008 | 7.716799 | TGATTTTGTATGTTATTGCCTCCTT | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2956 | 3009 | 7.771183 | TGATTTTGTATGTTATTGCCTCCTTC | 58.229 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
2957 | 3010 | 7.615365 | TGATTTTGTATGTTATTGCCTCCTTCT | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2958 | 3011 | 9.120538 | GATTTTGTATGTTATTGCCTCCTTCTA | 57.879 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2959 | 3012 | 9.646522 | ATTTTGTATGTTATTGCCTCCTTCTAT | 57.353 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
2960 | 3013 | 8.450578 | TTTGTATGTTATTGCCTCCTTCTATG | 57.549 | 34.615 | 0.00 | 0.00 | 0.00 | 2.23 |
2961 | 3014 | 7.136822 | TGTATGTTATTGCCTCCTTCTATGT | 57.863 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2962 | 3015 | 7.573710 | TGTATGTTATTGCCTCCTTCTATGTT | 58.426 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2963 | 3016 | 8.052748 | TGTATGTTATTGCCTCCTTCTATGTTT | 58.947 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2964 | 3017 | 7.961326 | ATGTTATTGCCTCCTTCTATGTTTT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2965 | 3018 | 7.775053 | TGTTATTGCCTCCTTCTATGTTTTT | 57.225 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2966 | 3019 | 8.871629 | TGTTATTGCCTCCTTCTATGTTTTTA | 57.128 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
2967 | 3020 | 9.303116 | TGTTATTGCCTCCTTCTATGTTTTTAA | 57.697 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
2968 | 3021 | 9.788960 | GTTATTGCCTCCTTCTATGTTTTTAAG | 57.211 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2969 | 3022 | 6.834168 | TTGCCTCCTTCTATGTTTTTAAGG | 57.166 | 37.500 | 0.00 | 0.00 | 39.93 | 2.69 |
2970 | 3023 | 4.705023 | TGCCTCCTTCTATGTTTTTAAGGC | 59.295 | 41.667 | 0.00 | 0.00 | 45.46 | 4.35 |
2971 | 3024 | 4.201920 | GCCTCCTTCTATGTTTTTAAGGCG | 60.202 | 45.833 | 0.00 | 0.00 | 38.70 | 5.52 |
2972 | 3025 | 5.183228 | CCTCCTTCTATGTTTTTAAGGCGA | 58.817 | 41.667 | 0.00 | 0.00 | 38.70 | 5.54 |
2973 | 3026 | 5.064834 | CCTCCTTCTATGTTTTTAAGGCGAC | 59.935 | 44.000 | 0.00 | 0.00 | 38.70 | 5.19 |
2974 | 3027 | 4.628333 | TCCTTCTATGTTTTTAAGGCGACG | 59.372 | 41.667 | 0.00 | 0.00 | 38.70 | 5.12 |
2975 | 3028 | 4.330740 | TTCTATGTTTTTAAGGCGACGC | 57.669 | 40.909 | 12.43 | 12.43 | 0.00 | 5.19 |
2987 | 3040 | 2.491152 | CGACGCCTTACCGCCTTA | 59.509 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
2988 | 3041 | 1.588139 | CGACGCCTTACCGCCTTAG | 60.588 | 63.158 | 0.00 | 0.00 | 0.00 | 2.18 |
2989 | 3042 | 1.227176 | GACGCCTTACCGCCTTAGG | 60.227 | 63.158 | 0.00 | 0.00 | 37.30 | 2.69 |
2990 | 3043 | 2.108362 | CGCCTTACCGCCTTAGGG | 59.892 | 66.667 | 0.00 | 0.00 | 35.02 | 3.53 |
2991 | 3044 | 2.428925 | CGCCTTACCGCCTTAGGGA | 61.429 | 63.158 | 0.00 | 0.00 | 35.02 | 4.20 |
2992 | 3045 | 1.446366 | GCCTTACCGCCTTAGGGAG | 59.554 | 63.158 | 0.00 | 0.00 | 35.02 | 4.30 |
3038 | 3091 | 4.467084 | CTAGGCGGGCGCTTTGGA | 62.467 | 66.667 | 7.64 | 0.00 | 41.60 | 3.53 |
3039 | 3092 | 4.770874 | TAGGCGGGCGCTTTGGAC | 62.771 | 66.667 | 7.64 | 0.00 | 41.60 | 4.02 |
3047 | 3100 | 3.195698 | CGCTTTGGACGCCTAGGC | 61.196 | 66.667 | 24.75 | 24.75 | 37.85 | 3.93 |
3065 | 3118 | 3.274067 | GCCCAAAGCGGTCGATTT | 58.726 | 55.556 | 0.55 | 0.55 | 33.72 | 2.17 |
3066 | 3119 | 1.584495 | GCCCAAAGCGGTCGATTTT | 59.416 | 52.632 | 3.79 | 0.00 | 30.80 | 1.82 |
3067 | 3120 | 0.456142 | GCCCAAAGCGGTCGATTTTC | 60.456 | 55.000 | 3.79 | 0.00 | 30.80 | 2.29 |
3068 | 3121 | 0.170339 | CCCAAAGCGGTCGATTTTCC | 59.830 | 55.000 | 3.79 | 0.00 | 30.80 | 3.13 |
3069 | 3122 | 0.878416 | CCAAAGCGGTCGATTTTCCA | 59.122 | 50.000 | 3.79 | 0.00 | 30.80 | 3.53 |
3070 | 3123 | 1.268352 | CCAAAGCGGTCGATTTTCCAA | 59.732 | 47.619 | 3.79 | 0.00 | 30.80 | 3.53 |
3071 | 3124 | 2.287909 | CCAAAGCGGTCGATTTTCCAAA | 60.288 | 45.455 | 3.79 | 0.00 | 30.80 | 3.28 |
3072 | 3125 | 2.979813 | CAAAGCGGTCGATTTTCCAAAG | 59.020 | 45.455 | 3.79 | 0.00 | 30.80 | 2.77 |
3073 | 3126 | 0.521735 | AGCGGTCGATTTTCCAAAGC | 59.478 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3074 | 3127 | 0.793104 | GCGGTCGATTTTCCAAAGCG | 60.793 | 55.000 | 0.54 | 0.54 | 0.00 | 4.68 |
3075 | 3128 | 0.179200 | CGGTCGATTTTCCAAAGCGG | 60.179 | 55.000 | 7.00 | 0.00 | 0.00 | 5.52 |
3076 | 3129 | 1.161843 | GGTCGATTTTCCAAAGCGGA | 58.838 | 50.000 | 7.00 | 0.00 | 44.40 | 5.54 |
3083 | 3136 | 3.077907 | TCCAAAGCGGAAGGGGAG | 58.922 | 61.111 | 0.00 | 0.00 | 42.52 | 4.30 |
3084 | 3137 | 2.751837 | CCAAAGCGGAAGGGGAGC | 60.752 | 66.667 | 0.00 | 0.00 | 36.56 | 4.70 |
3085 | 3138 | 3.127533 | CAAAGCGGAAGGGGAGCG | 61.128 | 66.667 | 0.00 | 0.00 | 35.78 | 5.03 |
3092 | 3145 | 2.509561 | GAAGGGGAGCGCTTCGAC | 60.510 | 66.667 | 13.26 | 6.07 | 41.95 | 4.20 |
3093 | 3146 | 4.436998 | AAGGGGAGCGCTTCGACG | 62.437 | 66.667 | 13.26 | 0.00 | 30.91 | 5.12 |
3118 | 3171 | 2.577593 | GTCGCCTTAGGGACGCTT | 59.422 | 61.111 | 0.00 | 0.00 | 44.82 | 4.68 |
3119 | 3172 | 1.079336 | GTCGCCTTAGGGACGCTTT | 60.079 | 57.895 | 0.00 | 0.00 | 44.82 | 3.51 |
3120 | 3173 | 0.174162 | GTCGCCTTAGGGACGCTTTA | 59.826 | 55.000 | 0.00 | 0.00 | 44.82 | 1.85 |
3121 | 3174 | 0.896923 | TCGCCTTAGGGACGCTTTAA | 59.103 | 50.000 | 0.00 | 0.00 | 34.09 | 1.52 |
3122 | 3175 | 1.275856 | TCGCCTTAGGGACGCTTTAAA | 59.724 | 47.619 | 0.00 | 0.00 | 34.09 | 1.52 |
3123 | 3176 | 2.078392 | CGCCTTAGGGACGCTTTAAAA | 58.922 | 47.619 | 0.00 | 0.00 | 33.58 | 1.52 |
3124 | 3177 | 2.485038 | CGCCTTAGGGACGCTTTAAAAA | 59.515 | 45.455 | 0.00 | 0.00 | 33.58 | 1.94 |
3125 | 3178 | 3.668757 | CGCCTTAGGGACGCTTTAAAAAC | 60.669 | 47.826 | 0.00 | 0.00 | 33.58 | 2.43 |
3126 | 3179 | 3.253921 | GCCTTAGGGACGCTTTAAAAACA | 59.746 | 43.478 | 0.00 | 0.00 | 33.58 | 2.83 |
3127 | 3180 | 4.082408 | GCCTTAGGGACGCTTTAAAAACAT | 60.082 | 41.667 | 0.00 | 0.00 | 33.58 | 2.71 |
3128 | 3181 | 5.124297 | GCCTTAGGGACGCTTTAAAAACATA | 59.876 | 40.000 | 0.00 | 0.00 | 33.58 | 2.29 |
3129 | 3182 | 6.677187 | GCCTTAGGGACGCTTTAAAAACATAG | 60.677 | 42.308 | 0.00 | 0.00 | 33.58 | 2.23 |
3151 | 3204 | 1.025041 | CTCCTTTATCCTTTGGCCGC | 58.975 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
3192 | 3245 | 4.498346 | TGGACCAACCAGCACATG | 57.502 | 55.556 | 0.00 | 0.00 | 44.64 | 3.21 |
3225 | 3278 | 5.349817 | CAGTTCTGTGTGGTCAGATATGTTC | 59.650 | 44.000 | 0.00 | 0.00 | 42.84 | 3.18 |
3226 | 3279 | 5.012046 | AGTTCTGTGTGGTCAGATATGTTCA | 59.988 | 40.000 | 0.00 | 0.00 | 42.84 | 3.18 |
3314 | 3367 | 4.420522 | AAAAAGGGAAAGCTGCATTCAA | 57.579 | 36.364 | 17.98 | 0.00 | 0.00 | 2.69 |
3577 | 3632 | 7.918643 | AGGTGTGCAAAGAATTATTGTTTTTG | 58.081 | 30.769 | 0.00 | 0.85 | 33.18 | 2.44 |
3789 | 3844 | 8.537223 | CATTTTCAGACTGAAACAATTCTGTTG | 58.463 | 33.333 | 26.51 | 11.31 | 45.03 | 3.33 |
3849 | 3904 | 0.965439 | TTACAGGCATTGGTGTTGGC | 59.035 | 50.000 | 0.00 | 0.00 | 39.77 | 4.52 |
3973 | 4028 | 7.398829 | TGGTTTAAAGTCCTTATGCACATAGA | 58.601 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
3988 | 4043 | 5.980715 | TGCACATAGATTTTATGCTGCAATG | 59.019 | 36.000 | 6.36 | 5.77 | 38.12 | 2.82 |
3996 | 4051 | 1.836802 | TATGCTGCAATGCCTGTTGA | 58.163 | 45.000 | 6.36 | 0.00 | 0.00 | 3.18 |
4009 | 4065 | 2.490903 | GCCTGTTGATTCAGATGCAAGT | 59.509 | 45.455 | 0.00 | 0.00 | 37.61 | 3.16 |
4077 | 4134 | 2.301346 | CTGCACTTCTGTGTTTTCCCT | 58.699 | 47.619 | 0.00 | 0.00 | 45.44 | 4.20 |
4088 | 4145 | 6.698380 | TCTGTGTTTTCCCTAGTATGAGAAC | 58.302 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4155 | 4212 | 8.565896 | TTAATGCATGTAATCACTTCTCAAGT | 57.434 | 30.769 | 0.00 | 0.00 | 44.06 | 3.16 |
4280 | 4345 | 4.292977 | GCACTTTGCTGTATACCCATTC | 57.707 | 45.455 | 0.00 | 0.00 | 40.96 | 2.67 |
4282 | 4347 | 4.201950 | GCACTTTGCTGTATACCCATTCTG | 60.202 | 45.833 | 0.00 | 0.00 | 40.96 | 3.02 |
4283 | 4348 | 5.185454 | CACTTTGCTGTATACCCATTCTGA | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
4284 | 4349 | 5.824624 | CACTTTGCTGTATACCCATTCTGAT | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4285 | 4350 | 6.319658 | CACTTTGCTGTATACCCATTCTGATT | 59.680 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4286 | 4351 | 7.498900 | CACTTTGCTGTATACCCATTCTGATTA | 59.501 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
4324 | 4393 | 9.955208 | TGTTTACAGTCGTGTAGTTATATATGG | 57.045 | 33.333 | 0.00 | 0.00 | 40.33 | 2.74 |
4356 | 4425 | 3.191371 | GGTGTTGCCAAGATCCTAGTTTG | 59.809 | 47.826 | 0.00 | 0.00 | 37.17 | 2.93 |
4477 | 4546 | 6.287589 | TCTTGCCAGTTAACTTTTTGGAAA | 57.712 | 33.333 | 14.15 | 9.60 | 32.34 | 3.13 |
4736 | 4974 | 6.862209 | TCCATTATAACAACTGCACATTTCC | 58.138 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
4887 | 5125 | 1.532316 | AAATGGTGCTGCTGCTGGT | 60.532 | 52.632 | 17.00 | 0.00 | 40.48 | 4.00 |
4926 | 5164 | 4.349636 | TCACAGGTTTGTAAGAGGGAATCA | 59.650 | 41.667 | 0.00 | 0.00 | 35.25 | 2.57 |
4937 | 5175 | 3.176411 | AGAGGGAATCACTCATGTGTCA | 58.824 | 45.455 | 15.65 | 0.00 | 44.14 | 3.58 |
5144 | 5382 | 4.071423 | GCCAAAATGGTTATGCAAGGTTT | 58.929 | 39.130 | 0.00 | 0.00 | 40.46 | 3.27 |
5232 | 5492 | 8.034215 | CCAACAGACCTAAATTATCATTTTGCA | 58.966 | 33.333 | 0.00 | 0.00 | 34.29 | 4.08 |
5292 | 5552 | 1.650528 | ACCAGCTCCTAGGATATGCC | 58.349 | 55.000 | 13.12 | 0.00 | 0.00 | 4.40 |
5298 | 5558 | 2.092699 | GCTCCTAGGATATGCCCAATCC | 60.093 | 54.545 | 13.12 | 1.74 | 42.85 | 3.01 |
5312 | 5572 | 4.341806 | TGCCCAATCCATGTTCAATACATC | 59.658 | 41.667 | 0.00 | 0.00 | 45.71 | 3.06 |
5563 | 5823 | 7.962441 | TGAGGTATTCATACTTTATAGCTGCA | 58.038 | 34.615 | 1.02 | 0.00 | 33.94 | 4.41 |
5590 | 5850 | 9.955208 | TGTTATCATTTCATTGAGATGTTATGC | 57.045 | 29.630 | 14.74 | 8.93 | 34.77 | 3.14 |
5687 | 5947 | 3.181496 | GGCAAAGCTAAGGTATGCTGTTC | 60.181 | 47.826 | 0.00 | 0.00 | 39.71 | 3.18 |
5749 | 6009 | 5.997385 | TGCTTTTAAGTCCTTGACGATTTC | 58.003 | 37.500 | 0.00 | 0.00 | 37.67 | 2.17 |
5850 | 6110 | 6.632909 | AGATCAGATGCATGCTCTTAGATAC | 58.367 | 40.000 | 20.33 | 11.47 | 0.00 | 2.24 |
5854 | 6114 | 7.374272 | TCAGATGCATGCTCTTAGATACTTAC | 58.626 | 38.462 | 20.33 | 0.00 | 0.00 | 2.34 |
5907 | 6167 | 5.163447 | GCAGTATGTACTTACCTGTGGATCA | 60.163 | 44.000 | 13.70 | 0.00 | 39.31 | 2.92 |
5994 | 6254 | 1.135915 | CTATGCTCTTCAGGTGCGTCT | 59.864 | 52.381 | 0.00 | 0.00 | 37.26 | 4.18 |
6029 | 6289 | 2.185004 | AACAACGTGGGAGGAAGATG | 57.815 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
6030 | 6290 | 1.348064 | ACAACGTGGGAGGAAGATGA | 58.652 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
6031 | 6291 | 1.697432 | ACAACGTGGGAGGAAGATGAA | 59.303 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
6032 | 6292 | 2.305927 | ACAACGTGGGAGGAAGATGAAT | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
6033 | 6293 | 3.244911 | ACAACGTGGGAGGAAGATGAATT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
6034 | 6294 | 3.721087 | ACGTGGGAGGAAGATGAATTT | 57.279 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
6035 | 6295 | 3.347216 | ACGTGGGAGGAAGATGAATTTG | 58.653 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
6036 | 6296 | 2.098117 | CGTGGGAGGAAGATGAATTTGC | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
6037 | 6297 | 3.359950 | GTGGGAGGAAGATGAATTTGCT | 58.640 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
6038 | 6298 | 3.129988 | GTGGGAGGAAGATGAATTTGCTG | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
6039 | 6299 | 3.245371 | TGGGAGGAAGATGAATTTGCTGT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
6040 | 6300 | 3.129988 | GGGAGGAAGATGAATTTGCTGTG | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
6041 | 6301 | 3.760684 | GGAGGAAGATGAATTTGCTGTGT | 59.239 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
6042 | 6302 | 4.219288 | GGAGGAAGATGAATTTGCTGTGTT | 59.781 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
6043 | 6303 | 5.130292 | AGGAAGATGAATTTGCTGTGTTG | 57.870 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
6044 | 6304 | 4.586001 | AGGAAGATGAATTTGCTGTGTTGT | 59.414 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
6045 | 6305 | 4.919754 | GGAAGATGAATTTGCTGTGTTGTC | 59.080 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
6046 | 6306 | 5.278660 | GGAAGATGAATTTGCTGTGTTGTCT | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6047 | 6307 | 5.779529 | AGATGAATTTGCTGTGTTGTCTT | 57.220 | 34.783 | 0.00 | 0.00 | 0.00 | 3.01 |
6048 | 6308 | 6.152932 | AGATGAATTTGCTGTGTTGTCTTT | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
6049 | 6309 | 6.576185 | AGATGAATTTGCTGTGTTGTCTTTT | 58.424 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
6050 | 6310 | 7.043565 | AGATGAATTTGCTGTGTTGTCTTTTT | 58.956 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
6103 | 6371 | 5.817816 | ACCTTATAGGATTTGACAGCTTTCG | 59.182 | 40.000 | 0.00 | 0.00 | 37.67 | 3.46 |
6182 | 6450 | 9.605275 | TGCTACATTGATATGCTTATCCTATTC | 57.395 | 33.333 | 15.03 | 2.44 | 34.45 | 1.75 |
6209 | 6477 | 4.599041 | AGTTGATATGCAAAGTGCCCTTA | 58.401 | 39.130 | 0.00 | 0.00 | 44.23 | 2.69 |
6211 | 6479 | 5.300286 | AGTTGATATGCAAAGTGCCCTTATC | 59.700 | 40.000 | 0.00 | 3.59 | 44.23 | 1.75 |
6369 | 6637 | 2.354259 | GAAGGAATCAGTGCTGAGGTG | 58.646 | 52.381 | 7.96 | 0.00 | 43.61 | 4.00 |
6384 | 6652 | 7.014615 | AGTGCTGAGGTGATTTCTTTTGTAAAT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6625 | 6997 | 1.912043 | CTCTTTCTCTCCCCACCACAT | 59.088 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
6627 | 6999 | 3.519510 | CTCTTTCTCTCCCCACCACATAA | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
6638 | 7017 | 3.380142 | CCACCACATAAACAACTTGTGC | 58.620 | 45.455 | 0.00 | 0.00 | 39.48 | 4.57 |
6800 | 7179 | 1.968540 | GCTGTTCCACAGGTCCTGC | 60.969 | 63.158 | 19.40 | 2.59 | 46.01 | 4.85 |
6808 | 7187 | 1.546323 | CCACAGGTCCTGCAACATCTT | 60.546 | 52.381 | 19.40 | 0.00 | 34.37 | 2.40 |
7901 | 8413 | 5.438761 | ACATGCTTTCCTGTGTACTTTTC | 57.561 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
7906 | 8418 | 5.008613 | TGCTTTCCTGTGTACTTTTCATGAC | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
7909 | 8421 | 3.392947 | TCCTGTGTACTTTTCATGACCCA | 59.607 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
7912 | 8424 | 5.241403 | TGTGTACTTTTCATGACCCATCT | 57.759 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
7951 | 8467 | 7.649370 | AGCTGATCATCTTATTAATGTGACG | 57.351 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
7952 | 8468 | 7.436933 | AGCTGATCATCTTATTAATGTGACGA | 58.563 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
7953 | 8469 | 7.598118 | AGCTGATCATCTTATTAATGTGACGAG | 59.402 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
7954 | 8470 | 7.621013 | GCTGATCATCTTATTAATGTGACGAGC | 60.621 | 40.741 | 0.00 | 5.23 | 0.00 | 5.03 |
7975 | 8492 | 5.193679 | AGCCAAACTTACTCTTGTTCTTGT | 58.806 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
8058 | 8575 | 1.695893 | CGGCAACTGCGTGATCGAAT | 61.696 | 55.000 | 0.00 | 0.00 | 43.26 | 3.34 |
8071 | 8588 | 6.077838 | GCGTGATCGAATTTTCACTTTACTT | 58.922 | 36.000 | 13.41 | 0.00 | 40.05 | 2.24 |
8089 | 8609 | 1.104577 | TTTGCCGCTTTTTCCCGTCT | 61.105 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
8189 | 8713 | 3.556843 | GGTGTGCCTTTGCCATGTTATTT | 60.557 | 43.478 | 0.00 | 0.00 | 36.33 | 1.40 |
8258 | 8788 | 5.351465 | CCACTGTCTTGTGAATTATTACGCT | 59.649 | 40.000 | 0.00 | 0.00 | 40.12 | 5.07 |
8268 | 8798 | 5.003778 | GTGAATTATTACGCTTGCAGCTTTG | 59.996 | 40.000 | 0.00 | 0.00 | 39.60 | 2.77 |
8330 | 8860 | 6.748132 | ACATAAATGGAAAACTGAGGTGTTG | 58.252 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
8333 | 8863 | 2.285083 | TGGAAAACTGAGGTGTTGTCG | 58.715 | 47.619 | 0.00 | 0.00 | 35.57 | 4.35 |
8337 | 8867 | 0.178068 | AACTGAGGTGTTGTCGTGCT | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
8393 | 8977 | 3.250744 | TCGCCTCGTGTATCTTTGAAAG | 58.749 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
8398 | 8982 | 5.178797 | CCTCGTGTATCTTTGAAAGACCAT | 58.821 | 41.667 | 10.18 | 0.00 | 41.01 | 3.55 |
8433 | 9018 | 1.197721 | GTGGCTCGTGGATTTGAACAG | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
8452 | 9037 | 1.779061 | GCTTCACCCTGGAACCTGGA | 61.779 | 60.000 | 16.54 | 0.00 | 37.23 | 3.86 |
8471 | 9056 | 4.012895 | GCACACGCACGGGAACAG | 62.013 | 66.667 | 0.00 | 0.00 | 38.36 | 3.16 |
8498 | 9095 | 0.743345 | AGTCGCCGTCATAAAAGGGC | 60.743 | 55.000 | 0.00 | 0.00 | 44.79 | 5.19 |
8501 | 9098 | 2.014594 | GCCGTCATAAAAGGGCGAG | 58.985 | 57.895 | 0.00 | 0.00 | 40.08 | 5.03 |
8502 | 9099 | 0.461339 | GCCGTCATAAAAGGGCGAGA | 60.461 | 55.000 | 0.00 | 0.00 | 40.08 | 4.04 |
8503 | 9100 | 1.287425 | CCGTCATAAAAGGGCGAGAC | 58.713 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
8504 | 9101 | 1.287425 | CGTCATAAAAGGGCGAGACC | 58.713 | 55.000 | 0.00 | 0.00 | 37.93 | 3.85 |
8505 | 9102 | 1.404986 | CGTCATAAAAGGGCGAGACCA | 60.405 | 52.381 | 0.00 | 0.00 | 42.05 | 4.02 |
8506 | 9103 | 2.741878 | CGTCATAAAAGGGCGAGACCAT | 60.742 | 50.000 | 0.00 | 0.00 | 42.05 | 3.55 |
8507 | 9104 | 2.872858 | GTCATAAAAGGGCGAGACCATC | 59.127 | 50.000 | 0.00 | 0.00 | 42.05 | 3.51 |
8508 | 9105 | 2.158813 | TCATAAAAGGGCGAGACCATCC | 60.159 | 50.000 | 0.00 | 0.00 | 42.05 | 3.51 |
8509 | 9106 | 1.580059 | TAAAAGGGCGAGACCATCCT | 58.420 | 50.000 | 0.00 | 0.00 | 42.05 | 3.24 |
8510 | 9107 | 0.698818 | AAAAGGGCGAGACCATCCTT | 59.301 | 50.000 | 0.00 | 0.00 | 42.05 | 3.36 |
8512 | 9109 | 1.961180 | AAGGGCGAGACCATCCTTCG | 61.961 | 60.000 | 0.00 | 0.00 | 42.05 | 3.79 |
8514 | 9111 | 2.496817 | GCGAGACCATCCTTCGCT | 59.503 | 61.111 | 10.45 | 0.00 | 45.01 | 4.93 |
8515 | 9112 | 1.590259 | GCGAGACCATCCTTCGCTC | 60.590 | 63.158 | 10.45 | 0.00 | 45.01 | 5.03 |
8516 | 9113 | 1.298713 | CGAGACCATCCTTCGCTCG | 60.299 | 63.158 | 0.00 | 0.00 | 41.77 | 5.03 |
8517 | 9114 | 1.810532 | GAGACCATCCTTCGCTCGT | 59.189 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
8535 | 9140 | 3.247442 | TCGTGCTAATAATAATCGGCCG | 58.753 | 45.455 | 22.12 | 22.12 | 0.00 | 6.13 |
8536 | 9141 | 2.222729 | CGTGCTAATAATAATCGGCCGC | 60.223 | 50.000 | 23.51 | 1.35 | 0.00 | 6.53 |
8542 | 9147 | 1.493772 | TAATAATCGGCCGCGACAAG | 58.506 | 50.000 | 23.51 | 0.00 | 0.00 | 3.16 |
8543 | 9148 | 1.772063 | AATAATCGGCCGCGACAAGC | 61.772 | 55.000 | 23.51 | 0.90 | 43.95 | 4.01 |
8544 | 9149 | 2.644555 | ATAATCGGCCGCGACAAGCT | 62.645 | 55.000 | 23.51 | 0.15 | 45.59 | 3.74 |
8549 | 9154 | 3.660111 | GCCGCGACAAGCTTGGTT | 61.660 | 61.111 | 29.18 | 10.46 | 45.59 | 3.67 |
8550 | 9155 | 2.252260 | CCGCGACAAGCTTGGTTG | 59.748 | 61.111 | 29.18 | 18.69 | 45.59 | 3.77 |
8551 | 9156 | 2.427410 | CGCGACAAGCTTGGTTGC | 60.427 | 61.111 | 29.18 | 25.29 | 45.59 | 4.17 |
8606 | 9297 | 8.492673 | TGAGCATCACTTTAATACTAAACCAG | 57.507 | 34.615 | 0.00 | 0.00 | 42.56 | 4.00 |
8607 | 9298 | 8.100791 | TGAGCATCACTTTAATACTAAACCAGT | 58.899 | 33.333 | 0.00 | 0.00 | 42.56 | 4.00 |
8608 | 9299 | 8.494016 | AGCATCACTTTAATACTAAACCAGTC | 57.506 | 34.615 | 0.00 | 0.00 | 38.80 | 3.51 |
8700 | 9403 | 0.591170 | CCGCGGAATCTCTCTCTCTC | 59.409 | 60.000 | 24.07 | 0.00 | 0.00 | 3.20 |
8701 | 9404 | 1.593196 | CGCGGAATCTCTCTCTCTCT | 58.407 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
8702 | 9405 | 1.531149 | CGCGGAATCTCTCTCTCTCTC | 59.469 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
8703 | 9406 | 2.806745 | CGCGGAATCTCTCTCTCTCTCT | 60.807 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
8790 | 9500 | 1.812922 | CAGCTCACGCAGATCCCAC | 60.813 | 63.158 | 0.00 | 0.00 | 39.10 | 4.61 |
8800 | 9510 | 0.250640 | CAGATCCCACCTGCATAGCC | 60.251 | 60.000 | 0.00 | 0.00 | 0.00 | 3.93 |
8819 | 9529 | 0.459489 | CTAGCAGTGTCTCTCAGCCC | 59.541 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
8824 | 9534 | 3.385384 | TGTCTCTCAGCCCGCCTG | 61.385 | 66.667 | 0.00 | 0.00 | 43.17 | 4.85 |
8833 | 9551 | 4.729856 | GCCCGCCTGCTTGCTTTG | 62.730 | 66.667 | 0.00 | 0.00 | 0.00 | 2.77 |
8871 | 9589 | 2.516460 | GGAGCGAGGACCGAGCTA | 60.516 | 66.667 | 15.17 | 0.00 | 41.84 | 3.32 |
8958 | 9676 | 1.281287 | AGCAGTACTAGTCCAGTCGGA | 59.719 | 52.381 | 0.00 | 0.00 | 38.80 | 4.55 |
8999 | 9717 | 4.335647 | CGGCAGCACCCAGACCTT | 62.336 | 66.667 | 0.00 | 0.00 | 33.26 | 3.50 |
9000 | 9718 | 2.954684 | CGGCAGCACCCAGACCTTA | 61.955 | 63.158 | 0.00 | 0.00 | 33.26 | 2.69 |
9001 | 9719 | 1.377333 | GGCAGCACCCAGACCTTAC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 2.34 |
9002 | 9720 | 1.377333 | GCAGCACCCAGACCTTACC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
9139 | 9871 | 2.825205 | CTTCAAAGCAACCCACAAAGG | 58.175 | 47.619 | 0.00 | 0.00 | 37.03 | 3.11 |
9196 | 9967 | 1.315690 | TCGCGGAGAAGAATACGGAT | 58.684 | 50.000 | 6.13 | 0.00 | 0.00 | 4.18 |
9208 | 9979 | 5.579753 | AGAATACGGATGGAGGACTAGTA | 57.420 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
9209 | 9980 | 6.142259 | AGAATACGGATGGAGGACTAGTAT | 57.858 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
9210 | 9981 | 7.268212 | AGAATACGGATGGAGGACTAGTATA | 57.732 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
9211 | 9982 | 7.340256 | AGAATACGGATGGAGGACTAGTATAG | 58.660 | 42.308 | 0.00 | 0.00 | 46.50 | 1.31 |
9333 | 10118 | 4.787280 | CGCCTCCCCTCCCTCAGT | 62.787 | 72.222 | 0.00 | 0.00 | 0.00 | 3.41 |
9334 | 10119 | 3.086600 | GCCTCCCCTCCCTCAGTG | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 3.66 |
9335 | 10120 | 2.366167 | CCTCCCCTCCCTCAGTGG | 60.366 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
9336 | 10121 | 3.086600 | CTCCCCTCCCTCAGTGGC | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
223 | 224 | 5.282510 | CGCTCGAAGAAAATCTATACACCT | 58.717 | 41.667 | 0.00 | 0.00 | 34.09 | 4.00 |
250 | 251 | 7.176865 | GGGATCTAGCAAAAGAGGTAAAGTTTT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
319 | 320 | 1.871039 | CCCGAGTGAACACGAACAAAT | 59.129 | 47.619 | 1.73 | 0.00 | 36.20 | 2.32 |
486 | 487 | 3.556999 | TCTCCGGGTAAGAGATCTGAAG | 58.443 | 50.000 | 0.00 | 0.00 | 35.46 | 3.02 |
549 | 554 | 3.570212 | AAGCGTGGCTGGGAAGGT | 61.570 | 61.111 | 0.00 | 0.00 | 39.62 | 3.50 |
682 | 692 | 1.021390 | CAGCTAAAGTGCCTGTCGGG | 61.021 | 60.000 | 0.00 | 0.00 | 38.36 | 5.14 |
683 | 693 | 1.639298 | GCAGCTAAAGTGCCTGTCGG | 61.639 | 60.000 | 0.00 | 0.00 | 34.67 | 4.79 |
684 | 694 | 1.790387 | GCAGCTAAAGTGCCTGTCG | 59.210 | 57.895 | 0.00 | 0.00 | 34.67 | 4.35 |
690 | 700 | 0.036010 | TCTGGAGGCAGCTAAAGTGC | 60.036 | 55.000 | 0.00 | 0.00 | 40.42 | 4.40 |
691 | 701 | 2.706339 | ATCTGGAGGCAGCTAAAGTG | 57.294 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
692 | 702 | 3.647636 | TCTATCTGGAGGCAGCTAAAGT | 58.352 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
693 | 703 | 4.888326 | ATCTATCTGGAGGCAGCTAAAG | 57.112 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
694 | 704 | 4.774726 | CCTATCTATCTGGAGGCAGCTAAA | 59.225 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
695 | 705 | 4.348486 | CCTATCTATCTGGAGGCAGCTAA | 58.652 | 47.826 | 0.00 | 0.00 | 0.00 | 3.09 |
696 | 706 | 3.309483 | CCCTATCTATCTGGAGGCAGCTA | 60.309 | 52.174 | 0.00 | 0.00 | 0.00 | 3.32 |
697 | 707 | 2.559478 | CCCTATCTATCTGGAGGCAGCT | 60.559 | 54.545 | 0.00 | 0.00 | 0.00 | 4.24 |
698 | 708 | 1.830477 | CCCTATCTATCTGGAGGCAGC | 59.170 | 57.143 | 0.00 | 0.00 | 0.00 | 5.25 |
699 | 709 | 3.182887 | ACCCTATCTATCTGGAGGCAG | 57.817 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
700 | 710 | 3.511477 | GAACCCTATCTATCTGGAGGCA | 58.489 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
701 | 711 | 2.835156 | GGAACCCTATCTATCTGGAGGC | 59.165 | 54.545 | 0.00 | 0.00 | 0.00 | 4.70 |
718 | 728 | 2.495084 | GGCCTCTTCATATTCGGGAAC | 58.505 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
719 | 729 | 1.070134 | CGGCCTCTTCATATTCGGGAA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
720 | 730 | 0.679505 | CGGCCTCTTCATATTCGGGA | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
721 | 731 | 0.393077 | ACGGCCTCTTCATATTCGGG | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
722 | 732 | 2.240493 | AACGGCCTCTTCATATTCGG | 57.760 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
723 | 733 | 4.616181 | AAAAACGGCCTCTTCATATTCG | 57.384 | 40.909 | 0.00 | 0.00 | 0.00 | 3.34 |
746 | 756 | 9.961265 | CATCGTGTTAGAACTATATAGACCAAA | 57.039 | 33.333 | 16.79 | 3.09 | 0.00 | 3.28 |
747 | 757 | 9.128404 | ACATCGTGTTAGAACTATATAGACCAA | 57.872 | 33.333 | 16.79 | 3.24 | 0.00 | 3.67 |
748 | 758 | 8.687292 | ACATCGTGTTAGAACTATATAGACCA | 57.313 | 34.615 | 16.79 | 1.23 | 0.00 | 4.02 |
749 | 759 | 9.962783 | AAACATCGTGTTAGAACTATATAGACC | 57.037 | 33.333 | 16.79 | 7.29 | 40.14 | 3.85 |
756 | 766 | 9.680315 | GAGCTATAAACATCGTGTTAGAACTAT | 57.320 | 33.333 | 4.24 | 2.30 | 40.14 | 2.12 |
757 | 767 | 8.900781 | AGAGCTATAAACATCGTGTTAGAACTA | 58.099 | 33.333 | 4.24 | 0.00 | 40.14 | 2.24 |
758 | 768 | 7.702772 | CAGAGCTATAAACATCGTGTTAGAACT | 59.297 | 37.037 | 4.24 | 0.00 | 40.14 | 3.01 |
759 | 769 | 7.701078 | TCAGAGCTATAAACATCGTGTTAGAAC | 59.299 | 37.037 | 4.24 | 0.00 | 40.14 | 3.01 |
760 | 770 | 7.768240 | TCAGAGCTATAAACATCGTGTTAGAA | 58.232 | 34.615 | 4.24 | 0.00 | 40.14 | 2.10 |
812 | 822 | 1.186267 | AGACGACTGGGGTCTGGTTC | 61.186 | 60.000 | 0.00 | 0.00 | 42.87 | 3.62 |
817 | 827 | 2.236395 | CCAAAATAGACGACTGGGGTCT | 59.764 | 50.000 | 0.00 | 7.78 | 46.05 | 3.85 |
862 | 886 | 9.502145 | TCCAAATTAACTTATACAGTACGTACG | 57.498 | 33.333 | 19.49 | 15.01 | 32.94 | 3.67 |
864 | 888 | 9.801873 | GGTCCAAATTAACTTATACAGTACGTA | 57.198 | 33.333 | 0.00 | 0.00 | 32.94 | 3.57 |
865 | 889 | 7.489113 | CGGTCCAAATTAACTTATACAGTACGT | 59.511 | 37.037 | 0.00 | 0.00 | 32.94 | 3.57 |
866 | 890 | 7.701924 | TCGGTCCAAATTAACTTATACAGTACG | 59.298 | 37.037 | 0.00 | 0.00 | 32.94 | 3.67 |
867 | 891 | 8.931385 | TCGGTCCAAATTAACTTATACAGTAC | 57.069 | 34.615 | 0.00 | 0.00 | 32.94 | 2.73 |
868 | 892 | 7.707893 | GCTCGGTCCAAATTAACTTATACAGTA | 59.292 | 37.037 | 0.00 | 0.00 | 32.94 | 2.74 |
869 | 893 | 6.537660 | GCTCGGTCCAAATTAACTTATACAGT | 59.462 | 38.462 | 0.00 | 0.00 | 37.30 | 3.55 |
870 | 894 | 6.018180 | GGCTCGGTCCAAATTAACTTATACAG | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
871 | 895 | 5.818857 | GGCTCGGTCCAAATTAACTTATACA | 59.181 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
872 | 896 | 5.050567 | CGGCTCGGTCCAAATTAACTTATAC | 60.051 | 44.000 | 0.00 | 0.00 | 0.00 | 1.47 |
873 | 897 | 5.051816 | CGGCTCGGTCCAAATTAACTTATA | 58.948 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
874 | 898 | 3.875134 | CGGCTCGGTCCAAATTAACTTAT | 59.125 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
875 | 899 | 3.264104 | CGGCTCGGTCCAAATTAACTTA | 58.736 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
876 | 900 | 2.081462 | CGGCTCGGTCCAAATTAACTT | 58.919 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
922 | 946 | 3.602483 | TCGCTTATTGTGGAGTTTACCC | 58.398 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
1011 | 1036 | 1.380920 | GGGCGTAGTAGGTGGAGGT | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
1072 | 1097 | 2.844839 | GAGAGGGACGGGGGATGG | 60.845 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
1172 | 1197 | 2.203126 | GCCCAGCATCTTCCTCCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1299 | 1324 | 3.853330 | CCGTCATCAGCAACCGCG | 61.853 | 66.667 | 0.00 | 0.00 | 45.49 | 6.46 |
1547 | 1572 | 1.268079 | CTAATCAGCAGCCGATCTCGA | 59.732 | 52.381 | 0.22 | 0.00 | 43.02 | 4.04 |
1548 | 1573 | 1.000827 | ACTAATCAGCAGCCGATCTCG | 60.001 | 52.381 | 0.00 | 0.00 | 39.44 | 4.04 |
1563 | 1588 | 8.869897 | CAACGCCATCGATGTAATATAACTAAT | 58.130 | 33.333 | 23.27 | 0.00 | 39.41 | 1.73 |
1570 | 1595 | 2.742053 | GCCAACGCCATCGATGTAATAT | 59.258 | 45.455 | 23.27 | 3.65 | 36.86 | 1.28 |
1574 | 1599 | 1.880796 | CGCCAACGCCATCGATGTA | 60.881 | 57.895 | 23.27 | 0.00 | 36.86 | 2.29 |
1575 | 1600 | 2.923426 | ATCGCCAACGCCATCGATGT | 62.923 | 55.000 | 23.27 | 2.77 | 39.78 | 3.06 |
1576 | 1601 | 1.775039 | AATCGCCAACGCCATCGATG | 61.775 | 55.000 | 18.76 | 18.76 | 40.91 | 3.84 |
1577 | 1602 | 0.249699 | TAATCGCCAACGCCATCGAT | 60.250 | 50.000 | 0.00 | 0.00 | 42.60 | 3.59 |
1578 | 1603 | 1.142097 | TAATCGCCAACGCCATCGA | 59.858 | 52.632 | 0.00 | 0.00 | 39.84 | 3.59 |
1579 | 1604 | 1.275657 | GTAATCGCCAACGCCATCG | 59.724 | 57.895 | 0.00 | 0.00 | 39.84 | 3.84 |
1617 | 1642 | 7.214381 | GCTGTGTCACCACCACTATTATAATA | 58.786 | 38.462 | 5.10 | 5.10 | 41.09 | 0.98 |
1618 | 1643 | 6.055588 | GCTGTGTCACCACCACTATTATAAT | 58.944 | 40.000 | 2.97 | 2.97 | 41.09 | 1.28 |
1619 | 1644 | 5.424757 | GCTGTGTCACCACCACTATTATAA | 58.575 | 41.667 | 0.00 | 0.00 | 41.09 | 0.98 |
1620 | 1645 | 4.440940 | CGCTGTGTCACCACCACTATTATA | 60.441 | 45.833 | 0.00 | 0.00 | 41.09 | 0.98 |
1631 | 1656 | 1.674359 | AAACAATCGCTGTGTCACCA | 58.326 | 45.000 | 0.00 | 0.00 | 38.67 | 4.17 |
1650 | 1677 | 1.669760 | CGCCTCGGCACCAAACTAA | 60.670 | 57.895 | 8.87 | 0.00 | 42.06 | 2.24 |
1706 | 1733 | 7.926674 | TCATCACATCATGACAAAACTACAT | 57.073 | 32.000 | 0.00 | 0.00 | 41.24 | 2.29 |
1708 | 1735 | 7.810658 | AGTTCATCACATCATGACAAAACTAC | 58.189 | 34.615 | 0.00 | 0.00 | 41.24 | 2.73 |
1709 | 1736 | 7.984422 | AGTTCATCACATCATGACAAAACTA | 57.016 | 32.000 | 0.00 | 0.00 | 41.24 | 2.24 |
1710 | 1737 | 6.889301 | AGTTCATCACATCATGACAAAACT | 57.111 | 33.333 | 0.00 | 0.00 | 41.24 | 2.66 |
1711 | 1738 | 7.095940 | CCAAAGTTCATCACATCATGACAAAAC | 60.096 | 37.037 | 0.00 | 0.00 | 41.24 | 2.43 |
1714 | 1741 | 5.535783 | ACCAAAGTTCATCACATCATGACAA | 59.464 | 36.000 | 0.00 | 0.00 | 41.24 | 3.18 |
1715 | 1742 | 5.072055 | ACCAAAGTTCATCACATCATGACA | 58.928 | 37.500 | 0.00 | 0.00 | 41.24 | 3.58 |
1716 | 1743 | 5.633830 | ACCAAAGTTCATCACATCATGAC | 57.366 | 39.130 | 0.00 | 0.00 | 41.24 | 3.06 |
1718 | 1745 | 5.570206 | CGAAACCAAAGTTCATCACATCATG | 59.430 | 40.000 | 0.00 | 0.00 | 34.19 | 3.07 |
1719 | 1746 | 5.335897 | CCGAAACCAAAGTTCATCACATCAT | 60.336 | 40.000 | 0.00 | 0.00 | 34.19 | 2.45 |
1720 | 1747 | 4.023279 | CCGAAACCAAAGTTCATCACATCA | 60.023 | 41.667 | 0.00 | 0.00 | 34.19 | 3.07 |
1721 | 1748 | 4.215399 | TCCGAAACCAAAGTTCATCACATC | 59.785 | 41.667 | 0.00 | 0.00 | 34.19 | 3.06 |
1722 | 1749 | 4.141287 | TCCGAAACCAAAGTTCATCACAT | 58.859 | 39.130 | 0.00 | 0.00 | 34.19 | 3.21 |
1723 | 1750 | 3.546724 | TCCGAAACCAAAGTTCATCACA | 58.453 | 40.909 | 0.00 | 0.00 | 34.19 | 3.58 |
1724 | 1751 | 3.058224 | CCTCCGAAACCAAAGTTCATCAC | 60.058 | 47.826 | 0.00 | 0.00 | 34.19 | 3.06 |
1725 | 1752 | 3.146066 | CCTCCGAAACCAAAGTTCATCA | 58.854 | 45.455 | 0.00 | 0.00 | 34.19 | 3.07 |
1726 | 1753 | 2.095212 | GCCTCCGAAACCAAAGTTCATC | 60.095 | 50.000 | 0.00 | 0.00 | 34.19 | 2.92 |
1727 | 1754 | 1.886542 | GCCTCCGAAACCAAAGTTCAT | 59.113 | 47.619 | 0.00 | 0.00 | 34.19 | 2.57 |
1728 | 1755 | 1.133915 | AGCCTCCGAAACCAAAGTTCA | 60.134 | 47.619 | 0.00 | 0.00 | 34.19 | 3.18 |
1729 | 1756 | 1.266989 | CAGCCTCCGAAACCAAAGTTC | 59.733 | 52.381 | 0.00 | 0.00 | 34.19 | 3.01 |
1730 | 1757 | 1.318576 | CAGCCTCCGAAACCAAAGTT | 58.681 | 50.000 | 0.00 | 0.00 | 38.03 | 2.66 |
1731 | 1758 | 0.182775 | ACAGCCTCCGAAACCAAAGT | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1732 | 1759 | 1.318576 | AACAGCCTCCGAAACCAAAG | 58.681 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1733 | 1760 | 1.407258 | CAAACAGCCTCCGAAACCAAA | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
1734 | 1761 | 1.028905 | CAAACAGCCTCCGAAACCAA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1735 | 1762 | 0.181587 | TCAAACAGCCTCCGAAACCA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1736 | 1763 | 1.534729 | ATCAAACAGCCTCCGAAACC | 58.465 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1737 | 1764 | 3.751698 | AGTTATCAAACAGCCTCCGAAAC | 59.248 | 43.478 | 0.00 | 0.00 | 38.12 | 2.78 |
1738 | 1765 | 4.015872 | AGTTATCAAACAGCCTCCGAAA | 57.984 | 40.909 | 0.00 | 0.00 | 38.12 | 3.46 |
1739 | 1766 | 3.695830 | AGTTATCAAACAGCCTCCGAA | 57.304 | 42.857 | 0.00 | 0.00 | 38.12 | 4.30 |
1740 | 1767 | 3.767673 | AGTAGTTATCAAACAGCCTCCGA | 59.232 | 43.478 | 0.00 | 0.00 | 38.12 | 4.55 |
1741 | 1768 | 4.124851 | AGTAGTTATCAAACAGCCTCCG | 57.875 | 45.455 | 0.00 | 0.00 | 38.12 | 4.63 |
1742 | 1769 | 6.819397 | AAAAGTAGTTATCAAACAGCCTCC | 57.181 | 37.500 | 0.00 | 0.00 | 38.12 | 4.30 |
1743 | 1770 | 7.334671 | AGCTAAAAGTAGTTATCAAACAGCCTC | 59.665 | 37.037 | 0.00 | 0.00 | 38.12 | 4.70 |
1744 | 1771 | 7.168905 | AGCTAAAAGTAGTTATCAAACAGCCT | 58.831 | 34.615 | 0.00 | 0.00 | 38.12 | 4.58 |
1745 | 1772 | 7.379098 | AGCTAAAAGTAGTTATCAAACAGCC | 57.621 | 36.000 | 0.00 | 0.00 | 38.12 | 4.85 |
1897 | 1927 | 6.533723 | CACAGCAATCTAATACGTAGGAAACA | 59.466 | 38.462 | 0.08 | 0.00 | 0.00 | 2.83 |
1910 | 1940 | 0.698238 | ACAGGCCCACAGCAATCTAA | 59.302 | 50.000 | 0.00 | 0.00 | 46.50 | 2.10 |
1946 | 1976 | 3.489398 | CGACTCTACAGCCCATACAACTC | 60.489 | 52.174 | 0.00 | 0.00 | 0.00 | 3.01 |
2122 | 2152 | 5.064558 | TGATCTATGAGGAAGTCTACCGTC | 58.935 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
2144 | 2174 | 6.899114 | ACTAAAGTCAAATAAGCGGTTTCTG | 58.101 | 36.000 | 4.64 | 0.82 | 0.00 | 3.02 |
2202 | 2236 | 5.574188 | ACTAGGAGAATGTCTTGCCAAATT | 58.426 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2227 | 2261 | 4.142049 | GGTGATACTCCAGTCCTTCAGAAG | 60.142 | 50.000 | 2.78 | 2.78 | 0.00 | 2.85 |
2241 | 2275 | 5.086104 | TGGCTAGTTCTTTGGTGATACTC | 57.914 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2265 | 2299 | 1.379044 | CTTCCATGCACCCCTGTCC | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
2266 | 2300 | 2.048603 | GCTTCCATGCACCCCTGTC | 61.049 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2313 | 2347 | 0.810031 | CCCATAAGAACTCGCCACCG | 60.810 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2319 | 2353 | 2.093447 | AGGTGAAGCCCATAAGAACTCG | 60.093 | 50.000 | 0.00 | 0.00 | 38.26 | 4.18 |
2323 | 2358 | 3.134804 | GCTAGAGGTGAAGCCCATAAGAA | 59.865 | 47.826 | 0.00 | 0.00 | 38.26 | 2.52 |
2333 | 2368 | 1.343075 | TGGGGTAGGCTAGAGGTGAAG | 60.343 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
2341 | 2376 | 3.081804 | CAAACAAGTTGGGGTAGGCTAG | 58.918 | 50.000 | 7.96 | 0.00 | 33.18 | 3.42 |
2342 | 2377 | 3.149005 | CAAACAAGTTGGGGTAGGCTA | 57.851 | 47.619 | 7.96 | 0.00 | 33.18 | 3.93 |
2384 | 2419 | 7.798596 | ACATCTTGCAAATAGGAGAATACAG | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2484 | 2537 | 3.173151 | ACTATGGACACATGGTCACTCA | 58.827 | 45.455 | 13.95 | 5.78 | 44.34 | 3.41 |
2503 | 2556 | 0.839946 | CCTGTTGGGCCAGCTATACT | 59.160 | 55.000 | 21.45 | 0.00 | 0.00 | 2.12 |
2504 | 2557 | 3.403936 | CCTGTTGGGCCAGCTATAC | 57.596 | 57.895 | 21.45 | 10.12 | 0.00 | 1.47 |
2522 | 2575 | 4.424711 | TGGACTGATTGGCCCGGC | 62.425 | 66.667 | 0.00 | 0.00 | 45.70 | 6.13 |
2523 | 2576 | 2.124570 | CTGGACTGATTGGCCCGG | 60.125 | 66.667 | 0.00 | 0.00 | 45.70 | 5.73 |
2524 | 2577 | 1.450312 | GACTGGACTGATTGGCCCG | 60.450 | 63.158 | 0.00 | 0.00 | 45.70 | 6.13 |
2525 | 2578 | 1.450312 | CGACTGGACTGATTGGCCC | 60.450 | 63.158 | 0.00 | 0.00 | 45.70 | 5.80 |
2526 | 2579 | 0.741221 | GTCGACTGGACTGATTGGCC | 60.741 | 60.000 | 8.70 | 0.00 | 46.75 | 5.36 |
2527 | 2580 | 1.078759 | CGTCGACTGGACTGATTGGC | 61.079 | 60.000 | 14.70 | 0.00 | 43.79 | 4.52 |
2528 | 2581 | 0.526211 | TCGTCGACTGGACTGATTGG | 59.474 | 55.000 | 14.70 | 0.00 | 43.79 | 3.16 |
2529 | 2582 | 1.901538 | CTCGTCGACTGGACTGATTG | 58.098 | 55.000 | 14.70 | 0.00 | 43.79 | 2.67 |
2530 | 2583 | 0.171455 | GCTCGTCGACTGGACTGATT | 59.829 | 55.000 | 14.70 | 0.00 | 43.79 | 2.57 |
2531 | 2584 | 0.960861 | TGCTCGTCGACTGGACTGAT | 60.961 | 55.000 | 14.70 | 0.00 | 43.79 | 2.90 |
2532 | 2585 | 0.960861 | ATGCTCGTCGACTGGACTGA | 60.961 | 55.000 | 14.70 | 1.04 | 43.79 | 3.41 |
2533 | 2586 | 0.799917 | CATGCTCGTCGACTGGACTG | 60.800 | 60.000 | 14.70 | 2.12 | 43.79 | 3.51 |
2534 | 2587 | 1.508545 | CATGCTCGTCGACTGGACT | 59.491 | 57.895 | 14.70 | 0.00 | 43.79 | 3.85 |
2535 | 2588 | 2.161486 | GCATGCTCGTCGACTGGAC | 61.161 | 63.158 | 14.70 | 0.90 | 42.48 | 4.02 |
2536 | 2589 | 2.181777 | GCATGCTCGTCGACTGGA | 59.818 | 61.111 | 14.70 | 8.01 | 0.00 | 3.86 |
2537 | 2590 | 2.887568 | GGCATGCTCGTCGACTGG | 60.888 | 66.667 | 18.92 | 7.11 | 0.00 | 4.00 |
2538 | 2591 | 2.125952 | TGGCATGCTCGTCGACTG | 60.126 | 61.111 | 18.92 | 5.66 | 0.00 | 3.51 |
2539 | 2592 | 2.182791 | CTGGCATGCTCGTCGACT | 59.817 | 61.111 | 18.92 | 0.00 | 0.00 | 4.18 |
2540 | 2593 | 3.558411 | GCTGGCATGCTCGTCGAC | 61.558 | 66.667 | 18.92 | 5.18 | 0.00 | 4.20 |
2541 | 2594 | 4.067913 | TGCTGGCATGCTCGTCGA | 62.068 | 61.111 | 18.92 | 0.00 | 0.00 | 4.20 |
2542 | 2595 | 3.857854 | GTGCTGGCATGCTCGTCG | 61.858 | 66.667 | 18.92 | 2.93 | 0.00 | 5.12 |
2543 | 2596 | 3.857854 | CGTGCTGGCATGCTCGTC | 61.858 | 66.667 | 18.92 | 0.53 | 42.54 | 4.20 |
2574 | 2627 | 3.599285 | TTTAGCCCGTGCCGTCCTG | 62.599 | 63.158 | 0.00 | 0.00 | 38.69 | 3.86 |
2575 | 2628 | 3.315949 | TTTAGCCCGTGCCGTCCT | 61.316 | 61.111 | 0.00 | 0.00 | 38.69 | 3.85 |
2576 | 2629 | 3.122971 | GTTTAGCCCGTGCCGTCC | 61.123 | 66.667 | 0.00 | 0.00 | 38.69 | 4.79 |
2577 | 2630 | 3.484547 | CGTTTAGCCCGTGCCGTC | 61.485 | 66.667 | 0.00 | 0.00 | 38.69 | 4.79 |
2643 | 2696 | 1.089112 | AAGTAATAAACGGGCCGTGC | 58.911 | 50.000 | 34.87 | 17.62 | 39.99 | 5.34 |
2644 | 2697 | 6.790285 | ATAATAAGTAATAAACGGGCCGTG | 57.210 | 37.500 | 34.87 | 4.16 | 39.99 | 4.94 |
2645 | 2698 | 7.806409 | AAATAATAAGTAATAAACGGGCCGT | 57.194 | 32.000 | 28.83 | 28.83 | 43.97 | 5.68 |
2680 | 2733 | 6.889722 | GGGCCAGCTGGTCATATATATAAAAA | 59.110 | 38.462 | 36.86 | 0.00 | 42.93 | 1.94 |
2681 | 2734 | 6.423182 | GGGCCAGCTGGTCATATATATAAAA | 58.577 | 40.000 | 36.86 | 0.00 | 42.93 | 1.52 |
2682 | 2735 | 5.396324 | CGGGCCAGCTGGTCATATATATAAA | 60.396 | 44.000 | 36.86 | 0.00 | 42.93 | 1.40 |
2683 | 2736 | 4.100963 | CGGGCCAGCTGGTCATATATATAA | 59.899 | 45.833 | 36.86 | 0.00 | 42.93 | 0.98 |
2684 | 2737 | 3.641436 | CGGGCCAGCTGGTCATATATATA | 59.359 | 47.826 | 36.86 | 0.00 | 42.93 | 0.86 |
2685 | 2738 | 2.435805 | CGGGCCAGCTGGTCATATATAT | 59.564 | 50.000 | 36.86 | 0.00 | 42.93 | 0.86 |
2686 | 2739 | 1.831106 | CGGGCCAGCTGGTCATATATA | 59.169 | 52.381 | 36.86 | 0.00 | 42.93 | 0.86 |
2687 | 2740 | 0.615331 | CGGGCCAGCTGGTCATATAT | 59.385 | 55.000 | 36.86 | 0.00 | 42.93 | 0.86 |
2688 | 2741 | 0.762842 | ACGGGCCAGCTGGTCATATA | 60.763 | 55.000 | 36.86 | 0.00 | 42.93 | 0.86 |
2689 | 2742 | 2.072487 | ACGGGCCAGCTGGTCATAT | 61.072 | 57.895 | 36.86 | 19.69 | 42.93 | 1.78 |
2690 | 2743 | 2.687200 | ACGGGCCAGCTGGTCATA | 60.687 | 61.111 | 36.86 | 0.00 | 42.93 | 2.15 |
2691 | 2744 | 4.415150 | CACGGGCCAGCTGGTCAT | 62.415 | 66.667 | 36.86 | 22.72 | 42.93 | 3.06 |
2723 | 2776 | 2.056223 | CCAGAGCTGGCCAAATGGG | 61.056 | 63.158 | 7.01 | 0.75 | 44.73 | 4.00 |
2724 | 2777 | 3.612251 | CCAGAGCTGGCCAAATGG | 58.388 | 61.111 | 7.01 | 8.88 | 44.73 | 3.16 |
2733 | 2786 | 1.002888 | CATAGGTATGGGCCAGAGCTG | 59.997 | 57.143 | 35.81 | 21.24 | 34.31 | 4.24 |
2734 | 2787 | 1.356124 | CATAGGTATGGGCCAGAGCT | 58.644 | 55.000 | 32.42 | 32.42 | 37.23 | 4.09 |
2735 | 2788 | 1.002544 | GACATAGGTATGGGCCAGAGC | 59.997 | 57.143 | 22.09 | 22.09 | 38.00 | 4.09 |
2736 | 2789 | 2.329267 | TGACATAGGTATGGGCCAGAG | 58.671 | 52.381 | 13.78 | 0.00 | 38.00 | 3.35 |
2737 | 2790 | 2.487746 | TGACATAGGTATGGGCCAGA | 57.512 | 50.000 | 13.78 | 3.79 | 38.00 | 3.86 |
2738 | 2791 | 3.181440 | ACATTGACATAGGTATGGGCCAG | 60.181 | 47.826 | 13.78 | 0.00 | 38.00 | 4.85 |
2739 | 2792 | 2.782925 | ACATTGACATAGGTATGGGCCA | 59.217 | 45.455 | 9.61 | 9.61 | 38.00 | 5.36 |
2740 | 2793 | 3.508845 | ACATTGACATAGGTATGGGCC | 57.491 | 47.619 | 0.00 | 0.00 | 38.00 | 5.80 |
2741 | 2794 | 5.415701 | CCAATACATTGACATAGGTATGGGC | 59.584 | 44.000 | 3.48 | 0.00 | 40.14 | 5.36 |
2742 | 2795 | 5.415701 | GCCAATACATTGACATAGGTATGGG | 59.584 | 44.000 | 3.48 | 9.28 | 39.37 | 4.00 |
2743 | 2796 | 6.003326 | TGCCAATACATTGACATAGGTATGG | 58.997 | 40.000 | 3.48 | 0.00 | 40.14 | 2.74 |
2744 | 2797 | 6.712095 | AGTGCCAATACATTGACATAGGTATG | 59.288 | 38.462 | 3.48 | 0.00 | 40.14 | 2.39 |
2745 | 2798 | 6.841601 | AGTGCCAATACATTGACATAGGTAT | 58.158 | 36.000 | 3.48 | 0.00 | 40.14 | 2.73 |
2746 | 2799 | 6.247229 | AGTGCCAATACATTGACATAGGTA | 57.753 | 37.500 | 3.48 | 0.00 | 40.14 | 3.08 |
2783 | 2836 | 6.894682 | TGCATAATGTTAATCACTAGGTGGA | 58.105 | 36.000 | 0.00 | 0.00 | 33.87 | 4.02 |
2821 | 2874 | 9.241317 | GTGAAGAACAATGCAAGGAATATATTG | 57.759 | 33.333 | 1.78 | 0.00 | 35.47 | 1.90 |
2889 | 2942 | 2.494059 | ACCCAATTTCACTGACACTCG | 58.506 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2936 | 2989 | 7.573710 | ACATAGAAGGAGGCAATAACATACAA | 58.426 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2948 | 3001 | 4.201920 | CGCCTTAAAAACATAGAAGGAGGC | 60.202 | 45.833 | 3.71 | 0.00 | 40.88 | 4.70 |
2949 | 3002 | 5.064834 | GTCGCCTTAAAAACATAGAAGGAGG | 59.935 | 44.000 | 3.71 | 0.00 | 40.88 | 4.30 |
2950 | 3003 | 5.220416 | CGTCGCCTTAAAAACATAGAAGGAG | 60.220 | 44.000 | 3.71 | 0.53 | 40.88 | 3.69 |
2951 | 3004 | 4.628333 | CGTCGCCTTAAAAACATAGAAGGA | 59.372 | 41.667 | 3.71 | 0.00 | 40.88 | 3.36 |
2952 | 3005 | 4.726876 | GCGTCGCCTTAAAAACATAGAAGG | 60.727 | 45.833 | 5.75 | 0.00 | 41.26 | 3.46 |
2953 | 3006 | 4.331962 | GCGTCGCCTTAAAAACATAGAAG | 58.668 | 43.478 | 5.75 | 0.00 | 0.00 | 2.85 |
2954 | 3007 | 3.125658 | GGCGTCGCCTTAAAAACATAGAA | 59.874 | 43.478 | 28.98 | 0.00 | 46.69 | 2.10 |
2955 | 3008 | 2.674357 | GGCGTCGCCTTAAAAACATAGA | 59.326 | 45.455 | 28.98 | 0.00 | 46.69 | 1.98 |
2956 | 3009 | 3.047613 | GGCGTCGCCTTAAAAACATAG | 57.952 | 47.619 | 28.98 | 0.00 | 46.69 | 2.23 |
2975 | 3028 | 1.408453 | CCCTCCCTAAGGCGGTAAGG | 61.408 | 65.000 | 0.00 | 0.00 | 44.71 | 2.69 |
2976 | 3029 | 1.408453 | CCCCTCCCTAAGGCGGTAAG | 61.408 | 65.000 | 0.00 | 0.00 | 44.71 | 2.34 |
2977 | 3030 | 1.383525 | CCCCTCCCTAAGGCGGTAA | 60.384 | 63.158 | 0.00 | 0.00 | 44.71 | 2.85 |
2978 | 3031 | 2.284493 | CCCCTCCCTAAGGCGGTA | 59.716 | 66.667 | 0.00 | 0.00 | 44.71 | 4.02 |
2979 | 3032 | 4.817909 | CCCCCTCCCTAAGGCGGT | 62.818 | 72.222 | 0.00 | 0.00 | 44.71 | 5.68 |
3021 | 3074 | 4.467084 | TCCAAAGCGCCCGCCTAG | 62.467 | 66.667 | 2.29 | 0.00 | 43.17 | 3.02 |
3022 | 3075 | 4.770874 | GTCCAAAGCGCCCGCCTA | 62.771 | 66.667 | 2.29 | 0.00 | 43.17 | 3.93 |
3030 | 3083 | 3.195698 | GCCTAGGCGTCCAAAGCG | 61.196 | 66.667 | 20.16 | 0.00 | 35.00 | 4.68 |
3048 | 3101 | 0.456142 | GAAAATCGACCGCTTTGGGC | 60.456 | 55.000 | 0.00 | 0.00 | 45.45 | 5.36 |
3049 | 3102 | 0.170339 | GGAAAATCGACCGCTTTGGG | 59.830 | 55.000 | 0.00 | 0.00 | 44.64 | 4.12 |
3050 | 3103 | 0.878416 | TGGAAAATCGACCGCTTTGG | 59.122 | 50.000 | 0.00 | 0.00 | 46.41 | 3.28 |
3051 | 3104 | 2.697431 | TTGGAAAATCGACCGCTTTG | 57.303 | 45.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3052 | 3105 | 2.607038 | GCTTTGGAAAATCGACCGCTTT | 60.607 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3053 | 3106 | 1.068541 | GCTTTGGAAAATCGACCGCTT | 60.069 | 47.619 | 0.00 | 0.00 | 0.00 | 4.68 |
3054 | 3107 | 0.521735 | GCTTTGGAAAATCGACCGCT | 59.478 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
3055 | 3108 | 0.793104 | CGCTTTGGAAAATCGACCGC | 60.793 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3056 | 3109 | 0.179200 | CCGCTTTGGAAAATCGACCG | 60.179 | 55.000 | 0.00 | 0.00 | 42.00 | 4.79 |
3057 | 3110 | 1.161843 | TCCGCTTTGGAAAATCGACC | 58.838 | 50.000 | 0.00 | 0.00 | 46.38 | 4.79 |
3067 | 3120 | 2.751837 | GCTCCCCTTCCGCTTTGG | 60.752 | 66.667 | 0.00 | 0.00 | 40.09 | 3.28 |
3068 | 3121 | 3.127533 | CGCTCCCCTTCCGCTTTG | 61.128 | 66.667 | 0.00 | 0.00 | 0.00 | 2.77 |
3074 | 3127 | 3.771160 | TCGAAGCGCTCCCCTTCC | 61.771 | 66.667 | 12.06 | 0.00 | 36.26 | 3.46 |
3075 | 3128 | 2.509561 | GTCGAAGCGCTCCCCTTC | 60.510 | 66.667 | 12.06 | 2.47 | 36.27 | 3.46 |
3076 | 3129 | 4.436998 | CGTCGAAGCGCTCCCCTT | 62.437 | 66.667 | 12.06 | 0.00 | 0.00 | 3.95 |
3101 | 3154 | 0.174162 | TAAAGCGTCCCTAAGGCGAC | 59.826 | 55.000 | 0.00 | 0.00 | 43.57 | 5.19 |
3102 | 3155 | 0.896923 | TTAAAGCGTCCCTAAGGCGA | 59.103 | 50.000 | 0.00 | 0.00 | 43.57 | 5.54 |
3103 | 3156 | 1.729284 | TTTAAAGCGTCCCTAAGGCG | 58.271 | 50.000 | 0.00 | 0.00 | 43.57 | 5.52 |
3104 | 3157 | 3.253921 | TGTTTTTAAAGCGTCCCTAAGGC | 59.746 | 43.478 | 0.00 | 0.00 | 39.09 | 4.35 |
3105 | 3158 | 5.638596 | ATGTTTTTAAAGCGTCCCTAAGG | 57.361 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3106 | 3159 | 6.677187 | GCCTATGTTTTTAAAGCGTCCCTAAG | 60.677 | 42.308 | 0.00 | 0.00 | 0.00 | 2.18 |
3107 | 3160 | 5.124297 | GCCTATGTTTTTAAAGCGTCCCTAA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3108 | 3161 | 4.637091 | GCCTATGTTTTTAAAGCGTCCCTA | 59.363 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
3109 | 3162 | 3.442625 | GCCTATGTTTTTAAAGCGTCCCT | 59.557 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
3110 | 3163 | 3.428452 | GGCCTATGTTTTTAAAGCGTCCC | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
3111 | 3164 | 3.442625 | AGGCCTATGTTTTTAAAGCGTCC | 59.557 | 43.478 | 1.29 | 0.00 | 0.00 | 4.79 |
3112 | 3165 | 4.438336 | GGAGGCCTATGTTTTTAAAGCGTC | 60.438 | 45.833 | 4.42 | 7.23 | 34.02 | 5.19 |
3113 | 3166 | 3.442625 | GGAGGCCTATGTTTTTAAAGCGT | 59.557 | 43.478 | 4.42 | 0.00 | 0.00 | 5.07 |
3114 | 3167 | 3.694566 | AGGAGGCCTATGTTTTTAAAGCG | 59.305 | 43.478 | 4.42 | 0.00 | 28.47 | 4.68 |
3115 | 3168 | 5.661056 | AAGGAGGCCTATGTTTTTAAAGC | 57.339 | 39.130 | 4.42 | 0.00 | 31.13 | 3.51 |
3116 | 3169 | 8.414003 | GGATAAAGGAGGCCTATGTTTTTAAAG | 58.586 | 37.037 | 4.42 | 0.00 | 31.13 | 1.85 |
3117 | 3170 | 8.119891 | AGGATAAAGGAGGCCTATGTTTTTAAA | 58.880 | 33.333 | 4.42 | 0.00 | 31.13 | 1.52 |
3118 | 3171 | 7.648770 | AGGATAAAGGAGGCCTATGTTTTTAA | 58.351 | 34.615 | 4.42 | 0.00 | 31.13 | 1.52 |
3119 | 3172 | 7.220890 | AGGATAAAGGAGGCCTATGTTTTTA | 57.779 | 36.000 | 4.42 | 7.14 | 31.13 | 1.52 |
3120 | 3173 | 6.092346 | AGGATAAAGGAGGCCTATGTTTTT | 57.908 | 37.500 | 4.42 | 4.98 | 31.13 | 1.94 |
3121 | 3174 | 5.734031 | AGGATAAAGGAGGCCTATGTTTT | 57.266 | 39.130 | 4.42 | 6.86 | 31.13 | 2.43 |
3122 | 3175 | 5.734031 | AAGGATAAAGGAGGCCTATGTTT | 57.266 | 39.130 | 4.42 | 8.52 | 31.13 | 2.83 |
3123 | 3176 | 5.449553 | CAAAGGATAAAGGAGGCCTATGTT | 58.550 | 41.667 | 4.42 | 1.84 | 31.13 | 2.71 |
3124 | 3177 | 4.141158 | CCAAAGGATAAAGGAGGCCTATGT | 60.141 | 45.833 | 4.42 | 0.00 | 31.13 | 2.29 |
3125 | 3178 | 4.401925 | CCAAAGGATAAAGGAGGCCTATG | 58.598 | 47.826 | 4.42 | 0.00 | 31.13 | 2.23 |
3126 | 3179 | 3.181428 | GCCAAAGGATAAAGGAGGCCTAT | 60.181 | 47.826 | 4.42 | 0.00 | 34.71 | 2.57 |
3127 | 3180 | 2.174854 | GCCAAAGGATAAAGGAGGCCTA | 59.825 | 50.000 | 4.42 | 0.00 | 34.71 | 3.93 |
3128 | 3181 | 1.063642 | GCCAAAGGATAAAGGAGGCCT | 60.064 | 52.381 | 3.86 | 3.86 | 34.71 | 5.19 |
3129 | 3182 | 1.403814 | GCCAAAGGATAAAGGAGGCC | 58.596 | 55.000 | 0.00 | 0.00 | 34.71 | 5.19 |
3151 | 3204 | 1.133792 | ACCATCCTTTATTCCCCGCAG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
3192 | 3245 | 2.099098 | CCACACAGAACTGGGAACAAAC | 59.901 | 50.000 | 11.18 | 0.00 | 42.06 | 2.93 |
3314 | 3367 | 6.017109 | CCTTGTAAGTTGTACAACAGAGCAAT | 60.017 | 38.462 | 33.93 | 13.88 | 43.47 | 3.56 |
3577 | 3632 | 1.078143 | CTGACAAGGGGCCTACAGC | 60.078 | 63.158 | 0.84 | 0.00 | 42.60 | 4.40 |
3849 | 3904 | 1.590238 | CGAAGACCTTGATAAGCTGCG | 59.410 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
3947 | 4002 | 5.957842 | TGTGCATAAGGACTTTAAACCAG | 57.042 | 39.130 | 0.00 | 0.00 | 36.96 | 4.00 |
3973 | 4028 | 3.899052 | ACAGGCATTGCAGCATAAAAT | 57.101 | 38.095 | 11.39 | 0.00 | 35.83 | 1.82 |
3988 | 4043 | 2.490903 | ACTTGCATCTGAATCAACAGGC | 59.509 | 45.455 | 0.00 | 0.00 | 38.31 | 4.85 |
4112 | 4169 | 6.537301 | TGCATTAAGTTGACTATCCTAAACCG | 59.463 | 38.462 | 0.00 | 0.00 | 0.00 | 4.44 |
4284 | 4349 | 9.373603 | ACGACTGTAAACACATAGCAAATATAA | 57.626 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
4285 | 4350 | 8.813282 | CACGACTGTAAACACATAGCAAATATA | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
4286 | 4351 | 7.333423 | ACACGACTGTAAACACATAGCAAATAT | 59.667 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4321 | 4390 | 0.322322 | CAACACCATTGGCAAGCCAT | 59.678 | 50.000 | 15.49 | 2.48 | 46.64 | 4.40 |
4323 | 4392 | 1.668793 | GCAACACCATTGGCAAGCC | 60.669 | 57.895 | 5.96 | 3.61 | 0.00 | 4.35 |
4324 | 4393 | 1.668793 | GGCAACACCATTGGCAAGC | 60.669 | 57.895 | 5.96 | 1.12 | 43.47 | 4.01 |
4356 | 4425 | 9.545105 | AACATCATCTTCAGAAGATTCACTATC | 57.455 | 33.333 | 21.30 | 0.00 | 45.75 | 2.08 |
4415 | 4484 | 9.066892 | TGAATGTCAACCATAAAAGCTATATCC | 57.933 | 33.333 | 0.00 | 0.00 | 31.97 | 2.59 |
4477 | 4546 | 9.167311 | GAGATTCAAACTACATCCACTGTATTT | 57.833 | 33.333 | 0.00 | 0.00 | 39.58 | 1.40 |
4926 | 5164 | 6.412362 | ACTAAGAAGAACTGACACATGAGT | 57.588 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
5144 | 5382 | 0.756294 | CACACACACACACCTCCCTA | 59.244 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5312 | 5572 | 3.634568 | TTACAAAAAGATGCCACCACG | 57.365 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
5560 | 5820 | 8.002984 | ACATCTCAATGAAATGATAACATGCA | 57.997 | 30.769 | 3.25 | 0.00 | 35.46 | 3.96 |
5687 | 5947 | 6.592798 | ATTTCTTTCAAAACACATGCACAG | 57.407 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
5732 | 5992 | 4.884668 | ACAGGAAATCGTCAAGGACTTA | 57.115 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
5749 | 6009 | 6.015519 | TCCTATTCATTGAAACCAACAACAGG | 60.016 | 38.462 | 2.68 | 0.61 | 0.00 | 4.00 |
5907 | 6167 | 5.123502 | TCGCGTTCTATCTACAGAAAGAAGT | 59.876 | 40.000 | 5.77 | 0.00 | 36.49 | 3.01 |
5994 | 6254 | 6.293516 | CCACGTTGTTTTACCAACTATAGCAA | 60.294 | 38.462 | 0.00 | 0.00 | 42.00 | 3.91 |
6050 | 6310 | 0.761802 | AGCAAATTCCCCCGCAAAAA | 59.238 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
6051 | 6311 | 0.034616 | CAGCAAATTCCCCCGCAAAA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
6052 | 6312 | 1.118356 | ACAGCAAATTCCCCCGCAAA | 61.118 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
6053 | 6313 | 1.532794 | ACAGCAAATTCCCCCGCAA | 60.533 | 52.632 | 0.00 | 0.00 | 0.00 | 4.85 |
6054 | 6314 | 2.117206 | ACAGCAAATTCCCCCGCA | 59.883 | 55.556 | 0.00 | 0.00 | 0.00 | 5.69 |
6055 | 6315 | 1.815817 | AACACAGCAAATTCCCCCGC | 61.816 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
6056 | 6316 | 0.038343 | CAACACAGCAAATTCCCCCG | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
6057 | 6317 | 1.000843 | GACAACACAGCAAATTCCCCC | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
6058 | 6318 | 1.686052 | TGACAACACAGCAAATTCCCC | 59.314 | 47.619 | 0.00 | 0.00 | 0.00 | 4.81 |
6059 | 6319 | 3.123050 | GTTGACAACACAGCAAATTCCC | 58.877 | 45.455 | 13.52 | 0.00 | 0.00 | 3.97 |
6060 | 6320 | 3.123050 | GGTTGACAACACAGCAAATTCC | 58.877 | 45.455 | 19.58 | 0.00 | 0.00 | 3.01 |
6103 | 6371 | 3.058914 | CCAATGTGACGTCCTTGAGAAAC | 60.059 | 47.826 | 14.12 | 2.08 | 0.00 | 2.78 |
6174 | 6442 | 9.725019 | TTTGCATATCAACTTATCGAATAGGAT | 57.275 | 29.630 | 0.00 | 0.00 | 33.73 | 3.24 |
6209 | 6477 | 3.934457 | AAAGAAAACCGCAATTCCGAT | 57.066 | 38.095 | 0.00 | 0.00 | 0.00 | 4.18 |
6211 | 6479 | 3.120041 | ACAAAAGAAAACCGCAATTCCG | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
6315 | 6583 | 2.618241 | CTCAGCAGCCTGTAAACAAACA | 59.382 | 45.455 | 0.00 | 0.00 | 40.09 | 2.83 |
6426 | 6694 | 6.780457 | AAGTAAGCATTCAAGGCATGTATT | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
6627 | 6999 | 9.816354 | AAAATAATTCTTACTGCACAAGTTGTT | 57.184 | 25.926 | 5.57 | 0.00 | 40.56 | 2.83 |
6800 | 7179 | 9.485206 | AAATGGATCAAAGAGAAAAAGATGTTG | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
7951 | 8467 | 5.297029 | ACAAGAACAAGAGTAAGTTTGGCTC | 59.703 | 40.000 | 0.00 | 0.00 | 0.00 | 4.70 |
7952 | 8468 | 5.193679 | ACAAGAACAAGAGTAAGTTTGGCT | 58.806 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
7953 | 8469 | 5.500645 | ACAAGAACAAGAGTAAGTTTGGC | 57.499 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
7954 | 8470 | 5.823045 | AGGACAAGAACAAGAGTAAGTTTGG | 59.177 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
8058 | 8575 | 4.379339 | AAGCGGCAAAGTAAAGTGAAAA | 57.621 | 36.364 | 1.45 | 0.00 | 0.00 | 2.29 |
8071 | 8588 | 1.512156 | GAGACGGGAAAAAGCGGCAA | 61.512 | 55.000 | 1.45 | 0.00 | 0.00 | 4.52 |
8189 | 8713 | 3.262420 | GAGATCCGACTGCAGCTAAAAA | 58.738 | 45.455 | 15.27 | 0.00 | 0.00 | 1.94 |
8258 | 8788 | 4.339872 | AATCAATCAACCAAAGCTGCAA | 57.660 | 36.364 | 1.02 | 0.00 | 0.00 | 4.08 |
8268 | 8798 | 5.995897 | AGGCCGTAGTAATAATCAATCAACC | 59.004 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
8433 | 9018 | 1.303643 | CCAGGTTCCAGGGTGAAGC | 60.304 | 63.158 | 0.00 | 0.00 | 41.80 | 3.86 |
8471 | 9056 | 0.460284 | ATGACGGCGACTCAATCACC | 60.460 | 55.000 | 16.62 | 0.00 | 0.00 | 4.02 |
8498 | 9095 | 1.298713 | CGAGCGAAGGATGGTCTCG | 60.299 | 63.158 | 0.00 | 0.00 | 40.22 | 4.04 |
8501 | 9098 | 2.167861 | GCACGAGCGAAGGATGGTC | 61.168 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
8502 | 9099 | 2.125512 | GCACGAGCGAAGGATGGT | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
8512 | 9109 | 3.062234 | GGCCGATTATTATTAGCACGAGC | 59.938 | 47.826 | 0.00 | 0.00 | 42.56 | 5.03 |
8514 | 9111 | 3.247442 | CGGCCGATTATTATTAGCACGA | 58.753 | 45.455 | 24.07 | 0.00 | 0.00 | 4.35 |
8515 | 9112 | 2.222729 | GCGGCCGATTATTATTAGCACG | 60.223 | 50.000 | 33.48 | 0.00 | 0.00 | 5.34 |
8516 | 9113 | 2.222729 | CGCGGCCGATTATTATTAGCAC | 60.223 | 50.000 | 33.48 | 4.17 | 36.29 | 4.40 |
8517 | 9114 | 1.996898 | CGCGGCCGATTATTATTAGCA | 59.003 | 47.619 | 33.48 | 0.00 | 36.29 | 3.49 |
8535 | 9140 | 0.591170 | TTAGCAACCAAGCTTGTCGC | 59.409 | 50.000 | 24.35 | 21.32 | 43.70 | 5.19 |
8536 | 9141 | 3.058293 | TCAATTAGCAACCAAGCTTGTCG | 60.058 | 43.478 | 24.35 | 12.91 | 43.70 | 4.35 |
8550 | 9155 | 2.466654 | CCGGATCGGTGCTCAATTAGC | 61.467 | 57.143 | 0.00 | 0.00 | 44.67 | 3.09 |
8551 | 9156 | 1.502231 | CCGGATCGGTGCTCAATTAG | 58.498 | 55.000 | 0.00 | 0.00 | 42.73 | 1.73 |
8572 | 9263 | 2.906047 | GTGATGCTCACGGGCTATC | 58.094 | 57.895 | 1.40 | 0.00 | 37.67 | 2.08 |
8700 | 9403 | 1.251251 | CCTTTTGGTCCAAGCCAGAG | 58.749 | 55.000 | 4.09 | 0.18 | 40.01 | 3.35 |
8701 | 9404 | 0.827507 | GCCTTTTGGTCCAAGCCAGA | 60.828 | 55.000 | 4.09 | 0.00 | 42.99 | 3.86 |
8702 | 9405 | 1.667722 | GCCTTTTGGTCCAAGCCAG | 59.332 | 57.895 | 4.09 | 2.83 | 42.99 | 4.85 |
8703 | 9406 | 1.836604 | GGCCTTTTGGTCCAAGCCA | 60.837 | 57.895 | 22.51 | 0.00 | 42.99 | 4.75 |
8744 | 9448 | 0.586802 | CGTCTCGTGTGAGTGAGTGA | 59.413 | 55.000 | 0.00 | 0.00 | 43.09 | 3.41 |
8745 | 9449 | 0.999228 | GCGTCTCGTGTGAGTGAGTG | 60.999 | 60.000 | 0.00 | 0.00 | 43.09 | 3.51 |
8746 | 9450 | 1.283181 | GCGTCTCGTGTGAGTGAGT | 59.717 | 57.895 | 0.00 | 0.00 | 43.09 | 3.41 |
8747 | 9451 | 0.999228 | GTGCGTCTCGTGTGAGTGAG | 60.999 | 60.000 | 0.00 | 0.00 | 43.09 | 3.51 |
8800 | 9510 | 0.459489 | GGGCTGAGAGACACTGCTAG | 59.541 | 60.000 | 0.00 | 0.00 | 33.80 | 3.42 |
8819 | 9529 | 2.086251 | TTTCCCAAAGCAAGCAGGCG | 62.086 | 55.000 | 0.00 | 0.00 | 39.27 | 5.52 |
8824 | 9534 | 1.221466 | GGCGTTTTCCCAAAGCAAGC | 61.221 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
8833 | 9551 | 1.604438 | GGTCAAACATGGCGTTTTCCC | 60.604 | 52.381 | 0.00 | 0.00 | 45.79 | 3.97 |
8868 | 9586 | 3.059461 | CGTACTAGCACTGTAGCTCTAGC | 60.059 | 52.174 | 7.78 | 0.00 | 45.26 | 3.42 |
8869 | 9587 | 4.209703 | GTCGTACTAGCACTGTAGCTCTAG | 59.790 | 50.000 | 7.78 | 0.00 | 45.26 | 2.43 |
8870 | 9588 | 4.118410 | GTCGTACTAGCACTGTAGCTCTA | 58.882 | 47.826 | 7.78 | 0.00 | 45.26 | 2.43 |
8871 | 9589 | 2.937799 | GTCGTACTAGCACTGTAGCTCT | 59.062 | 50.000 | 7.78 | 0.00 | 45.26 | 4.09 |
8882 | 9600 | 0.802607 | GCCTGCAGTGTCGTACTAGC | 60.803 | 60.000 | 13.81 | 0.38 | 37.60 | 3.42 |
8885 | 9603 | 1.290324 | CTGCCTGCAGTGTCGTACT | 59.710 | 57.895 | 13.81 | 0.00 | 41.36 | 2.73 |
8913 | 9631 | 4.432712 | CTTGCTTTGTTTACCTGTTGCTT | 58.567 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
8914 | 9632 | 3.737972 | GCTTGCTTTGTTTACCTGTTGCT | 60.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
8915 | 9633 | 2.539688 | GCTTGCTTTGTTTACCTGTTGC | 59.460 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
8958 | 9676 | 2.551270 | TCCTCTGCCTGTCTAATTGGT | 58.449 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
9196 | 9967 | 6.116711 | CTAGTGCTCTATACTAGTCCTCCA | 57.883 | 45.833 | 0.00 | 0.00 | 41.58 | 3.86 |
9208 | 9979 | 2.251409 | TACCGCGACTAGTGCTCTAT | 57.749 | 50.000 | 8.23 | 0.00 | 0.00 | 1.98 |
9209 | 9980 | 2.028420 | TTACCGCGACTAGTGCTCTA | 57.972 | 50.000 | 8.23 | 0.00 | 0.00 | 2.43 |
9210 | 9981 | 1.171308 | TTTACCGCGACTAGTGCTCT | 58.829 | 50.000 | 8.23 | 0.00 | 0.00 | 4.09 |
9211 | 9982 | 1.986698 | TTTTACCGCGACTAGTGCTC | 58.013 | 50.000 | 8.23 | 0.00 | 0.00 | 4.26 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.