Multiple sequence alignment - TraesCS5A01G291300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G291300 chr5A 100.000 4521 0 0 1 4521 502218666 502223186 0.000000e+00 8349.0
1 TraesCS5A01G291300 chr5B 88.550 3607 205 107 407 3922 476445484 476448973 0.000000e+00 4181.0
2 TraesCS5A01G291300 chr5B 83.780 709 62 25 3838 4519 476454276 476454958 1.380000e-174 623.0
3 TraesCS5A01G291300 chr5B 96.000 100 4 0 3340 3439 476453621 476453720 3.620000e-36 163.0
4 TraesCS5A01G291300 chr5D 87.968 3549 232 97 404 3833 396422573 396426045 0.000000e+00 4008.0
5 TraesCS5A01G291300 chr5D 77.934 426 52 27 405 804 396417624 396418033 1.270000e-55 228.0
6 TraesCS5A01G291300 chr5D 85.377 212 26 5 407 616 396420975 396421183 9.850000e-52 215.0
7 TraesCS5A01G291300 chr5D 85.577 208 24 6 407 612 396419370 396419573 3.540000e-51 213.0
8 TraesCS5A01G291300 chr5D 88.462 130 13 1 4211 4340 396427722 396427849 6.060000e-34 156.0
9 TraesCS5A01G291300 chr4A 94.486 399 19 3 1 397 45542183 45541786 2.990000e-171 612.0
10 TraesCS5A01G291300 chr4A 91.899 395 29 3 3 396 542175724 542176116 2.380000e-152 549.0
11 TraesCS5A01G291300 chr4A 94.700 283 13 2 1 282 626382387 626382668 5.370000e-119 438.0
12 TraesCS5A01G291300 chr2B 92.211 398 27 3 3 397 113873316 113872920 1.100000e-155 560.0
13 TraesCS5A01G291300 chr2B 93.878 49 3 0 349 397 636474638 636474590 1.740000e-09 75.0
14 TraesCS5A01G291300 chr7D 91.864 381 28 3 3 381 79535298 79535677 3.100000e-146 529.0
15 TraesCS5A01G291300 chr6A 90.727 399 31 6 3 397 85225654 85226050 1.110000e-145 527.0
16 TraesCS5A01G291300 chr1A 91.935 372 20 3 1 363 520000042 520000412 3.120000e-141 512.0
17 TraesCS5A01G291300 chr3B 90.836 371 30 2 24 391 610208396 610208027 1.130000e-135 494.0
18 TraesCS5A01G291300 chr3A 87.841 403 37 6 3 395 119784446 119784046 3.190000e-126 462.0
19 TraesCS5A01G291300 chr1B 100.000 29 0 0 369 397 614935758 614935730 2.000000e-03 54.7
20 TraesCS5A01G291300 chrUn 100.000 28 0 0 370 397 22243348 22243375 8.000000e-03 52.8
21 TraesCS5A01G291300 chr4B 100.000 28 0 0 370 397 184888895 184888922 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G291300 chr5A 502218666 502223186 4520 False 8349 8349 100.0000 1 4521 1 chr5A.!!$F1 4520
1 TraesCS5A01G291300 chr5B 476445484 476448973 3489 False 4181 4181 88.5500 407 3922 1 chr5B.!!$F1 3515
2 TraesCS5A01G291300 chr5B 476453621 476454958 1337 False 393 623 89.8900 3340 4519 2 chr5B.!!$F2 1179
3 TraesCS5A01G291300 chr5D 396417624 396427849 10225 False 964 4008 85.0636 404 4340 5 chr5D.!!$F1 3936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.038166 GTTGTTGAGCTGGGGATGGA 59.962 55.000 0.00 0.00 0.00 3.41 F
260 261 0.038166 TTGTTGAGCTGGGGATGGAC 59.962 55.000 0.00 0.00 0.00 4.02 F
280 281 0.039437 GCTCGAGGTCTTGTGTTCGA 60.039 55.000 15.58 0.00 39.48 3.71 F
1445 6485 0.177141 TCCCAGCGTGGTATGCTAAC 59.823 55.000 0.00 0.00 38.65 2.34 F
1681 6746 0.530650 ACTCAAGTGTGCCTCGTGTG 60.531 55.000 0.00 0.00 0.00 3.82 F
2489 7589 1.071987 TCAGTTGTGGCCTCTGCAG 59.928 57.895 7.63 7.63 40.13 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 6487 0.179054 GATGGAAGAAGGGTACGGGC 60.179 60.0 0.00 0.0 0.00 6.13 R
1701 6766 0.321919 GAGAACTGGGCACATCAGCA 60.322 55.0 0.00 0.0 35.78 4.41 R
1703 6768 0.325933 TGGAGAACTGGGCACATCAG 59.674 55.0 0.00 0.0 38.16 2.90 R
2490 7590 0.321122 CGGAAAGAAGAGGCTGCAGT 60.321 55.0 16.64 0.0 0.00 4.40 R
2813 7914 1.204113 CCTCACCCAGCCTTCCTTCT 61.204 60.0 0.00 0.0 0.00 2.85 R
4445 11150 0.537188 TTTCTGCTCGACTGGATCCC 59.463 55.0 9.90 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 9.511144 GGTTAGTTTATTATTTGATTTGGTCCG 57.489 33.333 0.00 0.00 0.00 4.79
86 87 7.768240 AGTTTATTATTTGATTTGGTCCGACC 58.232 34.615 10.96 10.96 39.22 4.79
87 88 4.893424 ATTATTTGATTTGGTCCGACCG 57.107 40.909 13.02 0.00 42.58 4.79
88 89 2.194201 ATTTGATTTGGTCCGACCGT 57.806 45.000 13.02 1.47 42.58 4.83
89 90 1.970092 TTTGATTTGGTCCGACCGTT 58.030 45.000 13.02 0.00 42.58 4.44
90 91 1.515081 TTGATTTGGTCCGACCGTTC 58.485 50.000 13.02 9.60 42.58 3.95
91 92 0.393448 TGATTTGGTCCGACCGTTCA 59.607 50.000 13.02 11.88 42.58 3.18
92 93 1.202663 TGATTTGGTCCGACCGTTCAA 60.203 47.619 13.02 3.76 42.58 2.69
93 94 2.081462 GATTTGGTCCGACCGTTCAAT 58.919 47.619 13.02 8.16 42.58 2.57
94 95 1.970092 TTTGGTCCGACCGTTCAATT 58.030 45.000 13.02 0.00 42.58 2.32
95 96 1.970092 TTGGTCCGACCGTTCAATTT 58.030 45.000 13.02 0.00 42.58 1.82
96 97 2.835580 TGGTCCGACCGTTCAATTTA 57.164 45.000 13.02 0.00 42.58 1.40
97 98 2.690786 TGGTCCGACCGTTCAATTTAG 58.309 47.619 13.02 0.00 42.58 1.85
98 99 2.037511 TGGTCCGACCGTTCAATTTAGT 59.962 45.455 13.02 0.00 42.58 2.24
99 100 3.069289 GGTCCGACCGTTCAATTTAGTT 58.931 45.455 0.65 0.00 0.00 2.24
100 101 3.120442 GGTCCGACCGTTCAATTTAGTTG 60.120 47.826 0.65 0.00 39.25 3.16
101 102 3.495753 GTCCGACCGTTCAATTTAGTTGT 59.504 43.478 0.00 0.00 38.95 3.32
102 103 3.495377 TCCGACCGTTCAATTTAGTTGTG 59.505 43.478 0.00 0.00 38.95 3.33
103 104 3.495377 CCGACCGTTCAATTTAGTTGTGA 59.505 43.478 0.00 0.00 38.95 3.58
104 105 4.377022 CCGACCGTTCAATTTAGTTGTGAG 60.377 45.833 0.00 0.00 38.95 3.51
105 106 4.377022 CGACCGTTCAATTTAGTTGTGAGG 60.377 45.833 0.00 0.00 38.95 3.86
106 107 3.252458 ACCGTTCAATTTAGTTGTGAGGC 59.748 43.478 0.00 0.00 38.95 4.70
107 108 3.479006 CGTTCAATTTAGTTGTGAGGCG 58.521 45.455 0.00 0.00 38.95 5.52
108 109 3.185594 CGTTCAATTTAGTTGTGAGGCGA 59.814 43.478 0.00 0.00 38.95 5.54
109 110 4.319190 CGTTCAATTTAGTTGTGAGGCGAA 60.319 41.667 0.00 0.00 38.95 4.70
110 111 5.616866 CGTTCAATTTAGTTGTGAGGCGAAT 60.617 40.000 0.00 0.00 38.95 3.34
111 112 5.957842 TCAATTTAGTTGTGAGGCGAATT 57.042 34.783 0.00 0.00 38.95 2.17
112 113 6.325919 TCAATTTAGTTGTGAGGCGAATTT 57.674 33.333 0.00 0.00 38.95 1.82
113 114 6.378582 TCAATTTAGTTGTGAGGCGAATTTC 58.621 36.000 0.00 0.00 38.95 2.17
114 115 6.206634 TCAATTTAGTTGTGAGGCGAATTTCT 59.793 34.615 0.00 0.00 38.95 2.52
115 116 5.607119 TTTAGTTGTGAGGCGAATTTCTC 57.393 39.130 0.00 0.00 0.00 2.87
116 117 3.409026 AGTTGTGAGGCGAATTTCTCT 57.591 42.857 0.00 0.00 0.00 3.10
117 118 3.744660 AGTTGTGAGGCGAATTTCTCTT 58.255 40.909 0.00 0.00 0.00 2.85
118 119 4.137543 AGTTGTGAGGCGAATTTCTCTTT 58.862 39.130 0.00 0.00 0.00 2.52
119 120 4.214332 AGTTGTGAGGCGAATTTCTCTTTC 59.786 41.667 0.00 0.00 0.00 2.62
120 121 3.738982 TGTGAGGCGAATTTCTCTTTCA 58.261 40.909 0.00 0.00 0.00 2.69
121 122 4.133820 TGTGAGGCGAATTTCTCTTTCAA 58.866 39.130 0.00 0.00 0.00 2.69
122 123 4.578516 TGTGAGGCGAATTTCTCTTTCAAA 59.421 37.500 0.00 0.00 0.00 2.69
123 124 5.241506 TGTGAGGCGAATTTCTCTTTCAAAT 59.758 36.000 0.00 0.00 0.00 2.32
124 125 6.429692 TGTGAGGCGAATTTCTCTTTCAAATA 59.570 34.615 0.00 0.00 0.00 1.40
125 126 7.121168 TGTGAGGCGAATTTCTCTTTCAAATAT 59.879 33.333 0.00 0.00 0.00 1.28
126 127 7.430502 GTGAGGCGAATTTCTCTTTCAAATATG 59.569 37.037 0.00 0.00 0.00 1.78
127 128 7.121168 TGAGGCGAATTTCTCTTTCAAATATGT 59.879 33.333 0.00 0.00 0.00 2.29
128 129 8.506168 AGGCGAATTTCTCTTTCAAATATGTA 57.494 30.769 0.00 0.00 0.00 2.29
129 130 8.398665 AGGCGAATTTCTCTTTCAAATATGTAC 58.601 33.333 0.00 0.00 0.00 2.90
130 131 8.398665 GGCGAATTTCTCTTTCAAATATGTACT 58.601 33.333 0.00 0.00 0.00 2.73
131 132 9.774742 GCGAATTTCTCTTTCAAATATGTACTT 57.225 29.630 0.00 0.00 0.00 2.24
165 166 9.692325 ATAAGGAGTCAGATATTTTTGAAGCTT 57.308 29.630 0.00 0.00 0.00 3.74
166 167 7.388460 AGGAGTCAGATATTTTTGAAGCTTG 57.612 36.000 2.10 0.00 0.00 4.01
167 168 6.944862 AGGAGTCAGATATTTTTGAAGCTTGT 59.055 34.615 2.10 0.00 0.00 3.16
168 169 7.120432 AGGAGTCAGATATTTTTGAAGCTTGTC 59.880 37.037 2.10 0.00 0.00 3.18
169 170 7.120432 GGAGTCAGATATTTTTGAAGCTTGTCT 59.880 37.037 2.10 0.00 0.00 3.41
170 171 7.814642 AGTCAGATATTTTTGAAGCTTGTCTG 58.185 34.615 2.10 1.35 33.65 3.51
171 172 7.663081 AGTCAGATATTTTTGAAGCTTGTCTGA 59.337 33.333 2.10 4.06 37.73 3.27
172 173 7.748241 GTCAGATATTTTTGAAGCTTGTCTGAC 59.252 37.037 17.75 17.75 46.95 3.51
173 174 6.740002 CAGATATTTTTGAAGCTTGTCTGACG 59.260 38.462 2.10 0.00 34.10 4.35
174 175 4.900635 ATTTTTGAAGCTTGTCTGACGT 57.099 36.364 2.10 0.00 0.00 4.34
175 176 4.695217 TTTTTGAAGCTTGTCTGACGTT 57.305 36.364 2.10 0.00 0.00 3.99
176 177 5.804692 TTTTTGAAGCTTGTCTGACGTTA 57.195 34.783 2.10 0.00 0.00 3.18
177 178 6.371809 TTTTTGAAGCTTGTCTGACGTTAT 57.628 33.333 2.10 0.00 0.00 1.89
178 179 7.485418 TTTTTGAAGCTTGTCTGACGTTATA 57.515 32.000 2.10 0.00 0.00 0.98
179 180 6.706055 TTTGAAGCTTGTCTGACGTTATAG 57.294 37.500 2.10 0.00 0.00 1.31
180 181 5.638596 TGAAGCTTGTCTGACGTTATAGA 57.361 39.130 2.10 0.00 0.00 1.98
181 182 6.208988 TGAAGCTTGTCTGACGTTATAGAT 57.791 37.500 2.10 0.00 0.00 1.98
182 183 6.036470 TGAAGCTTGTCTGACGTTATAGATG 58.964 40.000 2.10 0.00 0.00 2.90
183 184 4.938080 AGCTTGTCTGACGTTATAGATGG 58.062 43.478 2.98 0.00 0.00 3.51
184 185 4.402793 AGCTTGTCTGACGTTATAGATGGT 59.597 41.667 2.98 0.00 0.00 3.55
185 186 5.593095 AGCTTGTCTGACGTTATAGATGGTA 59.407 40.000 2.98 0.00 0.00 3.25
186 187 5.915758 GCTTGTCTGACGTTATAGATGGTAG 59.084 44.000 2.98 0.00 0.00 3.18
187 188 6.459848 GCTTGTCTGACGTTATAGATGGTAGT 60.460 42.308 2.98 0.00 0.00 2.73
188 189 6.373186 TGTCTGACGTTATAGATGGTAGTG 57.627 41.667 2.98 0.00 0.00 2.74
189 190 6.117488 TGTCTGACGTTATAGATGGTAGTGA 58.883 40.000 2.98 0.00 0.00 3.41
190 191 6.600427 TGTCTGACGTTATAGATGGTAGTGAA 59.400 38.462 2.98 0.00 0.00 3.18
191 192 7.121611 TGTCTGACGTTATAGATGGTAGTGAAA 59.878 37.037 2.98 0.00 0.00 2.69
192 193 8.136165 GTCTGACGTTATAGATGGTAGTGAAAT 58.864 37.037 0.00 0.00 0.00 2.17
193 194 9.346005 TCTGACGTTATAGATGGTAGTGAAATA 57.654 33.333 0.00 0.00 0.00 1.40
207 208 9.687210 TGGTAGTGAAATATATACTAAACGCAG 57.313 33.333 0.00 0.00 0.00 5.18
208 209 9.136952 GGTAGTGAAATATATACTAAACGCAGG 57.863 37.037 0.00 0.00 0.00 4.85
209 210 9.903682 GTAGTGAAATATATACTAAACGCAGGA 57.096 33.333 0.00 0.00 0.00 3.86
210 211 8.813643 AGTGAAATATATACTAAACGCAGGAC 57.186 34.615 0.00 0.00 0.00 3.85
211 212 8.639761 AGTGAAATATATACTAAACGCAGGACT 58.360 33.333 0.00 0.00 0.00 3.85
212 213 9.257651 GTGAAATATATACTAAACGCAGGACTT 57.742 33.333 0.00 0.00 0.00 3.01
218 219 4.680171 ACTAAACGCAGGACTTAATTGC 57.320 40.909 0.00 0.00 34.58 3.56
219 220 4.069304 ACTAAACGCAGGACTTAATTGCA 58.931 39.130 0.00 0.00 37.69 4.08
220 221 4.517453 ACTAAACGCAGGACTTAATTGCAA 59.483 37.500 0.00 0.00 37.69 4.08
221 222 4.519540 AAACGCAGGACTTAATTGCAAT 57.480 36.364 5.99 5.99 37.69 3.56
222 223 3.492421 ACGCAGGACTTAATTGCAATG 57.508 42.857 13.82 2.97 37.69 2.82
223 224 3.081061 ACGCAGGACTTAATTGCAATGA 58.919 40.909 13.82 1.45 37.69 2.57
224 225 3.127548 ACGCAGGACTTAATTGCAATGAG 59.872 43.478 13.82 15.91 37.69 2.90
225 226 3.488047 CGCAGGACTTAATTGCAATGAGG 60.488 47.826 13.82 8.69 37.69 3.86
226 227 3.181483 GCAGGACTTAATTGCAATGAGGG 60.181 47.826 13.82 5.08 37.75 4.30
227 228 3.382546 CAGGACTTAATTGCAATGAGGGG 59.617 47.826 13.82 4.83 0.00 4.79
228 229 3.011708 AGGACTTAATTGCAATGAGGGGT 59.988 43.478 13.82 7.95 0.00 4.95
229 230 3.769300 GGACTTAATTGCAATGAGGGGTT 59.231 43.478 13.82 0.00 0.00 4.11
230 231 4.953579 GGACTTAATTGCAATGAGGGGTTA 59.046 41.667 13.82 0.00 0.00 2.85
231 232 5.067805 GGACTTAATTGCAATGAGGGGTTAG 59.932 44.000 13.82 0.88 0.00 2.34
232 233 5.826643 ACTTAATTGCAATGAGGGGTTAGA 58.173 37.500 13.82 0.00 0.00 2.10
233 234 6.435164 ACTTAATTGCAATGAGGGGTTAGAT 58.565 36.000 13.82 0.00 0.00 1.98
234 235 6.547510 ACTTAATTGCAATGAGGGGTTAGATC 59.452 38.462 13.82 0.00 0.00 2.75
235 236 4.803329 ATTGCAATGAGGGGTTAGATCT 57.197 40.909 12.09 0.00 0.00 2.75
236 237 3.565764 TGCAATGAGGGGTTAGATCTG 57.434 47.619 5.18 0.00 0.00 2.90
237 238 2.173356 TGCAATGAGGGGTTAGATCTGG 59.827 50.000 5.18 0.00 0.00 3.86
238 239 2.173569 GCAATGAGGGGTTAGATCTGGT 59.826 50.000 5.18 0.00 0.00 4.00
239 240 3.813443 CAATGAGGGGTTAGATCTGGTG 58.187 50.000 5.18 0.00 0.00 4.17
240 241 1.879575 TGAGGGGTTAGATCTGGTGG 58.120 55.000 5.18 0.00 0.00 4.61
241 242 1.080498 TGAGGGGTTAGATCTGGTGGT 59.920 52.381 5.18 0.00 0.00 4.16
242 243 2.197465 GAGGGGTTAGATCTGGTGGTT 58.803 52.381 5.18 0.00 0.00 3.67
243 244 1.916181 AGGGGTTAGATCTGGTGGTTG 59.084 52.381 5.18 0.00 0.00 3.77
244 245 1.633945 GGGGTTAGATCTGGTGGTTGT 59.366 52.381 5.18 0.00 0.00 3.32
245 246 2.041216 GGGGTTAGATCTGGTGGTTGTT 59.959 50.000 5.18 0.00 0.00 2.83
246 247 3.081804 GGGTTAGATCTGGTGGTTGTTG 58.918 50.000 5.18 0.00 0.00 3.33
247 248 3.244770 GGGTTAGATCTGGTGGTTGTTGA 60.245 47.826 5.18 0.00 0.00 3.18
248 249 4.003648 GGTTAGATCTGGTGGTTGTTGAG 58.996 47.826 5.18 0.00 0.00 3.02
249 250 2.191128 AGATCTGGTGGTTGTTGAGC 57.809 50.000 0.00 0.00 0.00 4.26
250 251 1.701847 AGATCTGGTGGTTGTTGAGCT 59.298 47.619 0.00 0.00 0.00 4.09
251 252 1.808945 GATCTGGTGGTTGTTGAGCTG 59.191 52.381 0.00 0.00 0.00 4.24
252 253 0.179020 TCTGGTGGTTGTTGAGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
253 254 1.152777 TGGTGGTTGTTGAGCTGGG 60.153 57.895 0.00 0.00 0.00 4.45
254 255 1.903404 GGTGGTTGTTGAGCTGGGG 60.903 63.158 0.00 0.00 0.00 4.96
255 256 1.150536 GTGGTTGTTGAGCTGGGGA 59.849 57.895 0.00 0.00 0.00 4.81
256 257 0.251341 GTGGTTGTTGAGCTGGGGAT 60.251 55.000 0.00 0.00 0.00 3.85
257 258 0.251297 TGGTTGTTGAGCTGGGGATG 60.251 55.000 0.00 0.00 0.00 3.51
258 259 0.967380 GGTTGTTGAGCTGGGGATGG 60.967 60.000 0.00 0.00 0.00 3.51
259 260 0.038166 GTTGTTGAGCTGGGGATGGA 59.962 55.000 0.00 0.00 0.00 3.41
260 261 0.038166 TTGTTGAGCTGGGGATGGAC 59.962 55.000 0.00 0.00 0.00 4.02
261 262 1.450312 GTTGAGCTGGGGATGGACG 60.450 63.158 0.00 0.00 0.00 4.79
262 263 3.329542 TTGAGCTGGGGATGGACGC 62.330 63.158 0.00 0.00 0.00 5.19
263 264 3.474570 GAGCTGGGGATGGACGCT 61.475 66.667 0.00 0.00 0.00 5.07
264 265 3.453070 GAGCTGGGGATGGACGCTC 62.453 68.421 0.00 0.00 40.07 5.03
265 266 4.899239 GCTGGGGATGGACGCTCG 62.899 72.222 0.00 0.00 0.00 5.03
266 267 3.147595 CTGGGGATGGACGCTCGA 61.148 66.667 0.00 0.00 0.00 4.04
267 268 3.144120 CTGGGGATGGACGCTCGAG 62.144 68.421 8.45 8.45 0.00 4.04
268 269 3.917760 GGGGATGGACGCTCGAGG 61.918 72.222 15.58 6.97 0.00 4.63
269 270 3.148279 GGGATGGACGCTCGAGGT 61.148 66.667 15.58 10.42 0.00 3.85
270 271 2.413765 GGATGGACGCTCGAGGTC 59.586 66.667 15.58 18.16 0.00 3.85
271 272 2.122167 GGATGGACGCTCGAGGTCT 61.122 63.158 24.12 12.25 34.82 3.85
272 273 1.668101 GGATGGACGCTCGAGGTCTT 61.668 60.000 24.12 16.21 34.82 3.01
273 274 0.526524 GATGGACGCTCGAGGTCTTG 60.527 60.000 24.12 0.00 34.82 3.02
274 275 1.251527 ATGGACGCTCGAGGTCTTGT 61.252 55.000 24.12 13.25 34.82 3.16
275 276 1.444553 GGACGCTCGAGGTCTTGTG 60.445 63.158 24.12 6.56 34.82 3.33
276 277 1.286260 GACGCTCGAGGTCTTGTGT 59.714 57.895 15.58 0.00 0.00 3.72
277 278 0.318784 GACGCTCGAGGTCTTGTGTT 60.319 55.000 15.58 0.00 0.00 3.32
278 279 0.318784 ACGCTCGAGGTCTTGTGTTC 60.319 55.000 15.58 0.00 0.00 3.18
279 280 1.337817 CGCTCGAGGTCTTGTGTTCG 61.338 60.000 15.58 0.72 34.56 3.95
280 281 0.039437 GCTCGAGGTCTTGTGTTCGA 60.039 55.000 15.58 0.00 39.48 3.71
281 282 1.687628 CTCGAGGTCTTGTGTTCGAC 58.312 55.000 3.91 0.00 37.18 4.20
282 283 1.267261 CTCGAGGTCTTGTGTTCGACT 59.733 52.381 3.91 0.00 37.18 4.18
283 284 1.679680 TCGAGGTCTTGTGTTCGACTT 59.320 47.619 0.00 0.00 37.18 3.01
284 285 2.052157 CGAGGTCTTGTGTTCGACTTC 58.948 52.381 0.00 0.00 35.19 3.01
285 286 2.052157 GAGGTCTTGTGTTCGACTTCG 58.948 52.381 0.00 0.00 41.45 3.79
286 287 1.137513 GGTCTTGTGTTCGACTTCGG 58.862 55.000 0.00 0.00 40.29 4.30
287 288 1.537562 GGTCTTGTGTTCGACTTCGGT 60.538 52.381 0.00 0.00 40.29 4.69
288 289 1.521423 GTCTTGTGTTCGACTTCGGTG 59.479 52.381 0.00 0.00 40.29 4.94
289 290 0.232303 CTTGTGTTCGACTTCGGTGC 59.768 55.000 0.00 0.00 40.29 5.01
290 291 1.484227 TTGTGTTCGACTTCGGTGCG 61.484 55.000 0.00 0.00 40.29 5.34
291 292 3.033764 TGTTCGACTTCGGTGCGC 61.034 61.111 0.00 0.00 40.29 6.09
292 293 4.117372 GTTCGACTTCGGTGCGCG 62.117 66.667 0.00 0.00 40.29 6.86
293 294 4.634133 TTCGACTTCGGTGCGCGT 62.634 61.111 8.43 0.00 40.29 6.01
294 295 4.634133 TCGACTTCGGTGCGCGTT 62.634 61.111 8.43 0.00 40.29 4.84
295 296 4.117372 CGACTTCGGTGCGCGTTC 62.117 66.667 8.43 0.37 35.37 3.95
296 297 2.733593 GACTTCGGTGCGCGTTCT 60.734 61.111 8.43 0.00 0.00 3.01
297 298 2.279918 ACTTCGGTGCGCGTTCTT 60.280 55.556 8.43 0.00 0.00 2.52
298 299 1.828331 GACTTCGGTGCGCGTTCTTT 61.828 55.000 8.43 0.00 0.00 2.52
299 300 1.278637 CTTCGGTGCGCGTTCTTTT 59.721 52.632 8.43 0.00 0.00 2.27
300 301 0.991770 CTTCGGTGCGCGTTCTTTTG 60.992 55.000 8.43 0.00 0.00 2.44
301 302 1.429927 TTCGGTGCGCGTTCTTTTGA 61.430 50.000 8.43 0.00 0.00 2.69
302 303 1.206578 CGGTGCGCGTTCTTTTGAT 59.793 52.632 8.43 0.00 0.00 2.57
303 304 0.385473 CGGTGCGCGTTCTTTTGATT 60.385 50.000 8.43 0.00 0.00 2.57
304 305 1.766069 GGTGCGCGTTCTTTTGATTT 58.234 45.000 8.43 0.00 0.00 2.17
305 306 2.124122 GGTGCGCGTTCTTTTGATTTT 58.876 42.857 8.43 0.00 0.00 1.82
306 307 2.538037 GGTGCGCGTTCTTTTGATTTTT 59.462 40.909 8.43 0.00 0.00 1.94
339 340 2.057503 CTGCGATACAGGGAGAATCG 57.942 55.000 0.00 0.00 43.19 3.34
349 350 1.633774 GGGAGAATCGCTAGGGATGA 58.366 55.000 21.76 0.00 45.72 2.92
350 351 1.971357 GGGAGAATCGCTAGGGATGAA 59.029 52.381 21.76 0.00 45.72 2.57
351 352 2.368875 GGGAGAATCGCTAGGGATGAAA 59.631 50.000 21.76 0.00 45.72 2.69
352 353 3.181454 GGGAGAATCGCTAGGGATGAAAA 60.181 47.826 21.76 0.00 45.72 2.29
353 354 4.451900 GGAGAATCGCTAGGGATGAAAAA 58.548 43.478 21.76 0.00 34.37 1.94
370 371 3.418684 AAAAATCAGTGTAGCGGGAGT 57.581 42.857 0.00 0.00 0.00 3.85
371 372 2.674796 AAATCAGTGTAGCGGGAGTC 57.325 50.000 0.00 0.00 0.00 3.36
372 373 0.456221 AATCAGTGTAGCGGGAGTCG 59.544 55.000 0.00 0.00 42.76 4.18
373 374 0.680280 ATCAGTGTAGCGGGAGTCGT 60.680 55.000 0.00 0.00 41.72 4.34
374 375 1.154016 CAGTGTAGCGGGAGTCGTG 60.154 63.158 0.00 0.00 41.72 4.35
375 376 2.506438 GTGTAGCGGGAGTCGTGC 60.506 66.667 0.00 0.00 41.72 5.34
376 377 4.111016 TGTAGCGGGAGTCGTGCG 62.111 66.667 0.22 0.00 41.72 5.34
377 378 4.849329 GTAGCGGGAGTCGTGCGG 62.849 72.222 0.22 0.00 41.72 5.69
381 382 3.518998 CGGGAGTCGTGCGGATCT 61.519 66.667 0.00 0.00 0.00 2.75
382 383 2.105128 GGGAGTCGTGCGGATCTG 59.895 66.667 0.00 0.00 0.00 2.90
383 384 2.711922 GGGAGTCGTGCGGATCTGT 61.712 63.158 2.89 0.00 0.00 3.41
384 385 1.215647 GGAGTCGTGCGGATCTGTT 59.784 57.895 2.89 0.00 0.00 3.16
385 386 1.078759 GGAGTCGTGCGGATCTGTTG 61.079 60.000 2.89 0.00 0.00 3.33
386 387 1.687494 GAGTCGTGCGGATCTGTTGC 61.687 60.000 2.89 0.00 0.00 4.17
387 388 1.738099 GTCGTGCGGATCTGTTGCT 60.738 57.895 2.89 0.00 0.00 3.91
388 389 0.457853 GTCGTGCGGATCTGTTGCTA 60.458 55.000 2.89 0.00 0.00 3.49
389 390 0.245266 TCGTGCGGATCTGTTGCTAA 59.755 50.000 2.89 0.00 0.00 3.09
390 391 0.370273 CGTGCGGATCTGTTGCTAAC 59.630 55.000 2.89 0.00 0.00 2.34
391 392 0.727398 GTGCGGATCTGTTGCTAACC 59.273 55.000 2.89 0.00 0.00 2.85
392 393 0.323302 TGCGGATCTGTTGCTAACCA 59.677 50.000 2.89 0.00 0.00 3.67
393 394 0.727398 GCGGATCTGTTGCTAACCAC 59.273 55.000 2.89 0.00 0.00 4.16
394 395 1.369625 CGGATCTGTTGCTAACCACC 58.630 55.000 0.00 0.00 0.00 4.61
395 396 1.338674 CGGATCTGTTGCTAACCACCA 60.339 52.381 0.00 0.00 0.00 4.17
396 397 2.359900 GGATCTGTTGCTAACCACCAG 58.640 52.381 0.00 0.00 35.47 4.00
397 398 1.740025 GATCTGTTGCTAACCACCAGC 59.260 52.381 0.00 0.00 34.28 4.85
398 399 0.250727 TCTGTTGCTAACCACCAGCC 60.251 55.000 0.00 0.00 38.29 4.85
399 400 0.250901 CTGTTGCTAACCACCAGCCT 60.251 55.000 0.00 0.00 38.29 4.58
400 401 0.184933 TGTTGCTAACCACCAGCCTT 59.815 50.000 0.00 0.00 38.29 4.35
401 402 1.328279 GTTGCTAACCACCAGCCTTT 58.672 50.000 0.00 0.00 38.29 3.11
402 403 2.158593 TGTTGCTAACCACCAGCCTTTA 60.159 45.455 0.00 0.00 38.29 1.85
403 404 2.888414 GTTGCTAACCACCAGCCTTTAA 59.112 45.455 0.00 0.00 38.29 1.52
404 405 2.510613 TGCTAACCACCAGCCTTTAAC 58.489 47.619 0.00 0.00 38.29 2.01
405 406 2.158593 TGCTAACCACCAGCCTTTAACA 60.159 45.455 0.00 0.00 38.29 2.41
406 407 3.089284 GCTAACCACCAGCCTTTAACAT 58.911 45.455 0.00 0.00 32.68 2.71
407 408 4.263550 TGCTAACCACCAGCCTTTAACATA 60.264 41.667 0.00 0.00 38.29 2.29
408 409 4.703093 GCTAACCACCAGCCTTTAACATAA 59.297 41.667 0.00 0.00 32.68 1.90
429 430 5.836024 AAACAACTGAGATTAGTGGGGTA 57.164 39.130 0.00 0.00 0.00 3.69
431 432 5.836024 ACAACTGAGATTAGTGGGGTAAA 57.164 39.130 0.00 0.00 0.00 2.01
460 2206 5.481473 CCCATTTCCAGAAATTTGAAGGAGA 59.519 40.000 2.86 0.00 38.84 3.71
465 2211 6.029346 TCCAGAAATTTGAAGGAGATTTGC 57.971 37.500 0.00 0.00 0.00 3.68
476 2222 3.416156 AGGAGATTTGCTTCCAGTGAAC 58.584 45.455 0.00 0.00 0.00 3.18
480 2226 4.070716 AGATTTGCTTCCAGTGAACTCTG 58.929 43.478 0.00 0.00 35.45 3.35
503 3855 8.758829 TCTGCAACCTCTATCTAGATTTAAACA 58.241 33.333 11.25 0.00 0.00 2.83
550 3902 2.372690 CCGACGAGGCAACGACTTG 61.373 63.158 10.66 0.00 46.39 3.16
582 5538 1.008875 CACATCCGTCGTGTCACTGG 61.009 60.000 0.65 0.63 0.00 4.00
583 5539 2.094659 CATCCGTCGTGTCACTGGC 61.095 63.158 0.65 0.00 0.00 4.85
608 5576 2.807108 GCCAGAAAACGACACCTCTCTT 60.807 50.000 0.00 0.00 0.00 2.85
615 5583 3.149005 ACGACACCTCTCTTTCTCTCT 57.851 47.619 0.00 0.00 0.00 3.10
678 5653 0.805614 CGACGACACCTCATCACTCT 59.194 55.000 0.00 0.00 0.00 3.24
707 5694 1.374252 TCGTCTTCGCTTTCCCTGC 60.374 57.895 0.00 0.00 36.96 4.85
708 5695 1.374758 CGTCTTCGCTTTCCCTGCT 60.375 57.895 0.00 0.00 0.00 4.24
709 5696 1.630244 CGTCTTCGCTTTCCCTGCTG 61.630 60.000 0.00 0.00 0.00 4.41
710 5697 1.672356 TCTTCGCTTTCCCTGCTGC 60.672 57.895 0.00 0.00 0.00 5.25
745 5733 2.192979 CATGGATCCACCCACCCG 59.807 66.667 18.99 0.00 39.34 5.28
746 5734 3.809013 ATGGATCCACCCACCCGC 61.809 66.667 18.99 0.00 39.34 6.13
827 5815 3.694043 TTCACTCGTTCATCCATTGGA 57.306 42.857 8.08 8.08 35.55 3.53
867 5862 2.429930 CCCCGGTCACAAAGCTCA 59.570 61.111 0.00 0.00 0.00 4.26
870 5865 1.339631 CCCCGGTCACAAAGCTCATTA 60.340 52.381 0.00 0.00 0.00 1.90
883 5878 6.038271 ACAAAGCTCATTACTTTTTCTCGTGT 59.962 34.615 0.00 0.00 35.19 4.49
892 5887 0.601841 TTTTCTCGTGTCCGCCTTCC 60.602 55.000 0.00 0.00 0.00 3.46
893 5888 1.469335 TTTCTCGTGTCCGCCTTCCT 61.469 55.000 0.00 0.00 0.00 3.36
908 5903 0.625849 TTCCTTCCTCCCCTGCAATC 59.374 55.000 0.00 0.00 0.00 2.67
965 5960 2.568623 ACAGGGTTGTTGGATCTGAC 57.431 50.000 0.00 0.00 32.28 3.51
967 5962 0.324943 AGGGTTGTTGGATCTGACCG 59.675 55.000 0.00 0.00 0.00 4.79
968 5963 0.676782 GGGTTGTTGGATCTGACCGG 60.677 60.000 0.00 0.00 0.00 5.28
969 5964 1.305930 GGTTGTTGGATCTGACCGGC 61.306 60.000 0.00 0.00 0.00 6.13
971 5966 1.066430 GTTGTTGGATCTGACCGGCTA 60.066 52.381 0.00 0.00 0.00 3.93
972 5967 1.496060 TGTTGGATCTGACCGGCTAT 58.504 50.000 0.00 0.00 0.00 2.97
973 5968 1.412710 TGTTGGATCTGACCGGCTATC 59.587 52.381 0.00 0.00 0.00 2.08
974 5969 1.689273 GTTGGATCTGACCGGCTATCT 59.311 52.381 0.00 0.00 0.00 1.98
975 5970 1.621992 TGGATCTGACCGGCTATCTC 58.378 55.000 0.00 0.00 0.00 2.75
976 5971 1.145945 TGGATCTGACCGGCTATCTCT 59.854 52.381 0.00 0.00 0.00 3.10
978 5973 2.509569 GATCTGACCGGCTATCTCTGA 58.490 52.381 0.00 0.57 0.00 3.27
980 5975 0.313672 CTGACCGGCTATCTCTGAGC 59.686 60.000 0.00 0.00 39.33 4.26
986 5981 3.028916 GCTATCTCTGAGCCGAGGA 57.971 57.895 0.00 0.00 33.60 3.71
988 5983 1.544537 GCTATCTCTGAGCCGAGGAGA 60.545 57.143 0.00 0.00 39.87 3.71
1070 6086 2.435059 GTCCTTCTCAGGTGCGCC 60.435 66.667 8.71 8.71 41.69 6.53
1074 6090 4.314440 TTCTCAGGTGCGCCGCTT 62.314 61.111 11.67 0.00 40.50 4.68
1091 6107 3.689161 CCGCTTAATTTCACACTCCATCA 59.311 43.478 0.00 0.00 0.00 3.07
1105 6125 5.948162 ACACTCCATCATATCAAAGCTTGTT 59.052 36.000 0.00 0.00 0.00 2.83
1106 6126 6.094603 ACACTCCATCATATCAAAGCTTGTTC 59.905 38.462 0.00 0.00 0.00 3.18
1109 6129 7.092137 TCCATCATATCAAAGCTTGTTCTTG 57.908 36.000 0.00 0.00 0.00 3.02
1116 6136 4.858935 TCAAAGCTTGTTCTTGATTTCCG 58.141 39.130 0.00 0.00 0.00 4.30
1196 6217 2.968574 CCCTCTCTCCTGCATTAGCTTA 59.031 50.000 0.00 0.00 42.74 3.09
1198 6219 3.554752 CCTCTCTCCTGCATTAGCTTAGC 60.555 52.174 0.00 0.00 42.74 3.09
1201 6222 4.163078 TCTCTCCTGCATTAGCTTAGCTTT 59.837 41.667 13.44 0.00 40.44 3.51
1204 6225 3.691118 TCCTGCATTAGCTTAGCTTTGTG 59.309 43.478 13.44 10.15 40.44 3.33
1205 6226 3.441572 CCTGCATTAGCTTAGCTTTGTGT 59.558 43.478 13.44 0.00 40.44 3.72
1206 6227 4.437930 CCTGCATTAGCTTAGCTTTGTGTC 60.438 45.833 13.44 6.40 40.44 3.67
1209 6230 4.641954 CATTAGCTTAGCTTTGTGTCGTG 58.358 43.478 13.44 0.00 40.44 4.35
1229 6257 1.615392 GGTATTTCCATGGCCATCTGC 59.385 52.381 17.61 1.93 36.13 4.26
1246 6274 1.288127 GCTTGGTTGCAGAGGCTTG 59.712 57.895 0.00 0.00 41.91 4.01
1256 6292 1.526917 AGAGGCTTGGTGTGTGTGC 60.527 57.895 0.00 0.00 0.00 4.57
1281 6317 1.589320 GTGTCTGTAAACGACGTTGCA 59.411 47.619 15.01 14.79 34.17 4.08
1283 6319 2.473609 TGTCTGTAAACGACGTTGCATC 59.526 45.455 15.01 12.05 34.17 3.91
1294 6334 3.428870 CGACGTTGCATCTAACTGAACTT 59.571 43.478 0.00 0.00 0.00 2.66
1342 6382 2.859273 ATCCGAAGCGCAACTCCAGG 62.859 60.000 11.47 2.76 0.00 4.45
1444 6484 0.464036 CTCCCAGCGTGGTATGCTAA 59.536 55.000 0.00 0.00 38.65 3.09
1445 6485 0.177141 TCCCAGCGTGGTATGCTAAC 59.823 55.000 0.00 0.00 38.65 2.34
1446 6486 0.814010 CCCAGCGTGGTATGCTAACC 60.814 60.000 1.46 1.46 38.65 2.85
1447 6487 1.151777 CCAGCGTGGTATGCTAACCG 61.152 60.000 3.98 0.00 38.65 4.44
1448 6488 1.520787 AGCGTGGTATGCTAACCGC 60.521 57.895 10.50 10.50 44.92 5.68
1449 6489 2.531376 GCGTGGTATGCTAACCGCC 61.531 63.158 13.70 5.57 45.47 6.13
1450 6490 1.885850 CGTGGTATGCTAACCGCCC 60.886 63.158 13.70 0.90 45.47 6.13
1451 6491 1.885850 GTGGTATGCTAACCGCCCG 60.886 63.158 9.65 0.00 43.02 6.13
1452 6492 2.360767 TGGTATGCTAACCGCCCGT 61.361 57.895 3.98 0.00 42.91 5.28
1467 6512 1.497161 CCCGTACCCTTCTTCCATCT 58.503 55.000 0.00 0.00 0.00 2.90
1488 6533 6.933514 TCTCCTCAACCATGCATACATATA 57.066 37.500 0.00 0.00 33.67 0.86
1490 6535 6.498303 TCTCCTCAACCATGCATACATATACT 59.502 38.462 0.00 0.00 33.67 2.12
1491 6536 7.016563 TCTCCTCAACCATGCATACATATACTT 59.983 37.037 0.00 0.00 33.67 2.24
1492 6537 6.936335 TCCTCAACCATGCATACATATACTTG 59.064 38.462 0.00 0.00 33.67 3.16
1546 6594 1.092348 TCACAGATGCTGCATTGCTC 58.908 50.000 17.36 4.63 34.37 4.26
1553 6601 1.462616 TGCTGCATTGCTCGGTTAAT 58.537 45.000 10.49 0.00 0.00 1.40
1574 6630 2.267174 ATCACAGCTGCAAACTGACT 57.733 45.000 20.19 4.49 38.55 3.41
1588 6644 6.148315 TGCAAACTGACTCAAATCATACTCTG 59.852 38.462 0.00 0.00 0.00 3.35
1614 6670 2.789208 CAATGCAGTAGAAATGGCACG 58.211 47.619 0.00 0.00 39.34 5.34
1623 6679 2.504367 AGAAATGGCACGCTACTTTGT 58.496 42.857 0.00 0.00 0.00 2.83
1681 6746 0.530650 ACTCAAGTGTGCCTCGTGTG 60.531 55.000 0.00 0.00 0.00 3.82
1797 6862 2.705934 ATCGCATGCGGCTCTTCGAT 62.706 55.000 37.18 19.35 41.67 3.59
1846 6911 3.928727 TGTGGTCGGTACTTTACTCAG 57.071 47.619 0.00 0.00 0.00 3.35
1861 6929 1.878088 ACTCAGAACTGTGCATTGCTG 59.122 47.619 10.49 3.05 0.00 4.41
1888 6957 4.870221 TGTCGAAATTCAGCATCATCAG 57.130 40.909 0.00 0.00 0.00 2.90
2041 7112 4.517285 GATCCAAAAGCTGTATCCTGACA 58.483 43.478 0.00 0.00 0.00 3.58
2074 7145 9.897744 TCTTTTGTACTAATTGCTTCTCATTTG 57.102 29.630 0.00 0.00 0.00 2.32
2075 7146 9.897744 CTTTTGTACTAATTGCTTCTCATTTGA 57.102 29.630 0.00 0.00 0.00 2.69
2105 7188 9.787435 AGATAAATAATTATGTTAACCTGGCGA 57.213 29.630 2.48 0.00 31.83 5.54
2122 7208 5.116069 TGGCGAGGAAATTGTTTTAGAAC 57.884 39.130 0.00 0.00 36.29 3.01
2143 7229 8.647143 AGAACATTTTTGTTCCTTAACACATG 57.353 30.769 13.62 0.00 45.18 3.21
2153 7239 5.416271 TCCTTAACACATGTCCTTAGGTC 57.584 43.478 0.00 0.00 0.00 3.85
2171 7257 4.437239 AGGTCAACAGAATATTCGCAGAG 58.563 43.478 9.78 1.50 38.43 3.35
2219 7305 2.183300 GCTGTCGCGTATGTGGGA 59.817 61.111 5.77 0.00 0.00 4.37
2280 7380 6.460537 GCTTGTCATCTTGCATTATCCATTCA 60.461 38.462 0.00 0.00 0.00 2.57
2310 7410 3.388024 CCTAGCCTACCTGCACAAGATAA 59.612 47.826 0.00 0.00 0.00 1.75
2486 7586 4.386413 GGTCAGTTGTGGCCTCTG 57.614 61.111 3.32 7.83 46.04 3.35
2487 7587 1.968540 GGTCAGTTGTGGCCTCTGC 60.969 63.158 3.32 0.00 46.04 4.26
2488 7588 1.227943 GTCAGTTGTGGCCTCTGCA 60.228 57.895 3.32 0.00 40.13 4.41
2489 7589 1.071987 TCAGTTGTGGCCTCTGCAG 59.928 57.895 7.63 7.63 40.13 4.41
2490 7590 1.071987 CAGTTGTGGCCTCTGCAGA 59.928 57.895 17.19 17.19 40.13 4.26
2742 7843 6.583562 ACTTCCTTATCTAGCACCATAACAC 58.416 40.000 0.00 0.00 0.00 3.32
2747 7848 6.929606 CCTTATCTAGCACCATAACACCTAAC 59.070 42.308 0.00 0.00 0.00 2.34
2778 7879 5.958380 TGGTAACTGAGTGAGTATCCTGAAT 59.042 40.000 0.00 0.00 33.09 2.57
2813 7914 1.183030 ACGTCATCGGTTCTGACCCA 61.183 55.000 0.00 0.00 43.42 4.51
2847 7948 2.610859 AGGCTCCACCACCCGAAT 60.611 61.111 0.00 0.00 43.14 3.34
2918 8023 4.141251 GGAATAATCCCAGGCTTGAAGGTA 60.141 45.833 0.00 0.00 40.10 3.08
2919 8024 2.808906 AATCCCAGGCTTGAAGGTAC 57.191 50.000 0.00 0.00 0.00 3.34
2920 8025 0.919710 ATCCCAGGCTTGAAGGTACC 59.080 55.000 2.73 2.73 0.00 3.34
2921 8026 0.474854 TCCCAGGCTTGAAGGTACCA 60.475 55.000 15.94 0.00 0.00 3.25
2930 8035 4.327680 GCTTGAAGGTACCAACATCTTCT 58.672 43.478 15.94 0.00 37.21 2.85
2939 8044 7.783042 AGGTACCAACATCTTCTATCAACTAC 58.217 38.462 15.94 0.00 0.00 2.73
2953 8058 3.525537 TCAACTACTTATCTGCTGCTGC 58.474 45.455 8.89 8.89 40.20 5.25
2975 8080 0.107214 TTTGGAATCCCTGCCGCTAG 60.107 55.000 0.00 0.00 0.00 3.42
3015 8120 3.794564 CGTTTTTCTTCGTTCCTTTTGGG 59.205 43.478 0.00 0.00 40.87 4.12
3217 8323 7.696981 AGGTAAGCCATCAAATAGATCATCAT 58.303 34.615 0.00 0.00 33.72 2.45
3286 8392 3.055385 TCTTTCCATTTCCAGGTAGGTCG 60.055 47.826 0.00 0.00 39.02 4.79
3373 8479 4.910585 CGCCCCGGTGACTATGCC 62.911 72.222 0.00 0.00 0.00 4.40
3588 8810 4.870123 TGGTCATTTGTTCAATTCCTGG 57.130 40.909 0.00 0.00 0.00 4.45
3621 8848 8.974060 TTTATATATGGGAAGTTCACCAGTTC 57.026 34.615 15.49 0.00 40.67 3.01
3636 8863 7.919313 TCACCAGTTCGTTATAAATATCGAC 57.081 36.000 0.00 1.09 35.11 4.20
3665 8892 2.683968 TCACTGAACAGTAATGGTCGC 58.316 47.619 3.45 0.00 40.20 5.19
3674 8901 3.386726 ACAGTAATGGTCGCCAGCTATTA 59.613 43.478 4.90 0.00 36.75 0.98
3766 8993 5.554437 TGGTAGACAAAATACCAGTGTGA 57.446 39.130 0.74 0.00 46.05 3.58
3822 9049 1.511850 CCGTTCATGCACAAGTGAGA 58.488 50.000 4.04 0.00 0.00 3.27
3833 9060 3.426695 GCACAAGTGAGAAGCGCAATAAT 60.427 43.478 11.47 0.00 0.00 1.28
3834 9061 4.093514 CACAAGTGAGAAGCGCAATAATG 58.906 43.478 11.47 0.25 0.00 1.90
3852 10363 0.612453 TGCATCCAAATGGCAGCTCA 60.612 50.000 14.21 0.00 36.24 4.26
3890 10401 7.093354 TCTGAACAGTTTTGTACAAATTTGCA 58.907 30.769 21.17 14.07 36.23 4.08
3893 10404 4.570369 ACAGTTTTGTACAAATTTGCAGCC 59.430 37.500 21.17 4.33 35.25 4.85
3936 10447 6.569228 CGAGATGTCGCATCTTAAAAGTAA 57.431 37.500 18.93 0.00 39.88 2.24
3938 10449 6.895040 CGAGATGTCGCATCTTAAAAGTAAAC 59.105 38.462 18.93 6.05 39.88 2.01
3966 10477 8.774586 ACAATGAACTACACACTTGAATTACTC 58.225 33.333 0.00 0.00 0.00 2.59
3967 10478 8.773645 CAATGAACTACACACTTGAATTACTCA 58.226 33.333 0.00 0.00 0.00 3.41
3973 10484 6.851222 ACACACTTGAATTACTCAACAGAG 57.149 37.500 0.00 0.00 39.20 3.35
3977 10488 5.991606 CACTTGAATTACTCAACAGAGACCA 59.008 40.000 0.00 0.00 39.20 4.02
3978 10489 5.992217 ACTTGAATTACTCAACAGAGACCAC 59.008 40.000 0.00 0.00 39.20 4.16
3981 10492 5.778241 TGAATTACTCAACAGAGACCACCTA 59.222 40.000 0.00 0.00 33.55 3.08
3985 10496 4.080687 ACTCAACAGAGACCACCTACTAC 58.919 47.826 0.00 0.00 33.55 2.73
3986 10497 4.079970 CTCAACAGAGACCACCTACTACA 58.920 47.826 0.00 0.00 0.00 2.74
3987 10498 4.673968 TCAACAGAGACCACCTACTACAT 58.326 43.478 0.00 0.00 0.00 2.29
3990 10501 3.011369 ACAGAGACCACCTACTACATGGA 59.989 47.826 0.00 0.00 36.94 3.41
3991 10502 3.634448 CAGAGACCACCTACTACATGGAG 59.366 52.174 2.41 2.41 36.94 3.86
3992 10503 2.362717 GAGACCACCTACTACATGGAGC 59.637 54.545 4.32 0.00 36.94 4.70
4007 10529 4.928398 AGCGTTGAGATGCTCTGG 57.072 55.556 0.00 0.00 44.80 3.86
4009 10531 2.467826 GCGTTGAGATGCTCTGGCC 61.468 63.158 0.00 0.00 37.74 5.36
4010 10532 1.078918 CGTTGAGATGCTCTGGCCA 60.079 57.895 4.71 4.71 37.74 5.36
4012 10534 0.807496 GTTGAGATGCTCTGGCCAAC 59.193 55.000 7.01 0.00 37.74 3.77
4013 10535 0.694771 TTGAGATGCTCTGGCCAACT 59.305 50.000 7.01 0.00 37.74 3.16
4014 10536 0.251354 TGAGATGCTCTGGCCAACTC 59.749 55.000 7.01 9.46 37.74 3.01
4015 10537 0.251354 GAGATGCTCTGGCCAACTCA 59.749 55.000 7.01 4.78 37.74 3.41
4016 10538 0.694771 AGATGCTCTGGCCAACTCAA 59.305 50.000 7.01 0.00 37.74 3.02
4017 10539 1.284198 AGATGCTCTGGCCAACTCAAT 59.716 47.619 7.01 0.00 37.74 2.57
4038 10560 9.173939 CTCAATCAGAAAATGAACACAAACTAC 57.826 33.333 0.00 0.00 42.53 2.73
4041 10563 6.494842 TCAGAAAATGAACACAAACTACTGC 58.505 36.000 0.00 0.00 34.02 4.40
4058 10580 2.441532 CATCAGGGGCAAGCCAGG 60.442 66.667 13.87 1.54 37.98 4.45
4120 10642 5.413833 CCTAGACACAAGCAAAATGACTGAT 59.586 40.000 0.00 0.00 0.00 2.90
4121 10643 5.117355 AGACACAAGCAAAATGACTGATG 57.883 39.130 0.00 0.00 0.00 3.07
4124 10646 3.918591 CACAAGCAAAATGACTGATGAGC 59.081 43.478 0.00 0.00 0.00 4.26
4143 10700 6.683974 TGAGCAGTTTATCCTCAATTAAGC 57.316 37.500 0.00 0.00 33.05 3.09
4168 10725 8.352201 GCCTGTAAAATCATGCTTGATATGTTA 58.648 33.333 14.86 10.87 41.83 2.41
4183 10740 2.590282 TGTTAACTACCTTTGCCCCC 57.410 50.000 7.22 0.00 0.00 5.40
4184 10741 1.271488 TGTTAACTACCTTTGCCCCCG 60.271 52.381 7.22 0.00 0.00 5.73
4186 10743 1.949799 TAACTACCTTTGCCCCCGTA 58.050 50.000 0.00 0.00 0.00 4.02
4216 10915 4.745649 GCTTCTCTAGCTTCGGAAAGTTA 58.254 43.478 0.00 0.00 46.77 2.24
4233 10932 5.741388 AAGTTAGATCGGTCAATGATTGC 57.259 39.130 0.00 0.00 0.00 3.56
4234 10933 4.769688 AGTTAGATCGGTCAATGATTGCA 58.230 39.130 0.00 0.00 0.00 4.08
4237 10936 6.319658 AGTTAGATCGGTCAATGATTGCAATT 59.680 34.615 14.33 0.00 0.00 2.32
4290 10989 9.674068 GAAACCCTCTTTATACAAGAGAAGAAT 57.326 33.333 18.51 7.39 44.96 2.40
4299 10998 6.749923 ATACAAGAGAAGAATCCAAACTGC 57.250 37.500 0.00 0.00 0.00 4.40
4306 11005 4.461781 AGAAGAATCCAAACTGCTCAATGG 59.538 41.667 0.00 0.00 0.00 3.16
4319 11018 2.229543 GCTCAATGGTTGTCATCTGCAA 59.770 45.455 0.00 0.00 34.44 4.08
4354 11053 7.376866 GCATTCACCATAAACGAATTATGTCAG 59.623 37.037 17.89 9.87 46.32 3.51
4355 11054 7.915293 TTCACCATAAACGAATTATGTCAGT 57.085 32.000 17.89 10.29 46.32 3.41
4356 11055 9.607988 ATTCACCATAAACGAATTATGTCAGTA 57.392 29.630 17.89 7.44 46.32 2.74
4357 11056 8.415192 TCACCATAAACGAATTATGTCAGTAC 57.585 34.615 17.89 0.00 46.32 2.73
4358 11057 8.255206 TCACCATAAACGAATTATGTCAGTACT 58.745 33.333 17.89 0.00 46.32 2.73
4366 11065 8.407457 ACGAATTATGTCAGTACTGTACAATG 57.593 34.615 21.99 10.22 0.00 2.82
4376 11075 8.808529 GTCAGTACTGTACAATGTAGCATTAAG 58.191 37.037 21.99 0.00 0.00 1.85
4420 11120 7.724305 TTGTACCTAATTGACAACTTGAGTC 57.276 36.000 0.00 0.00 36.55 3.36
4423 11123 7.656137 TGTACCTAATTGACAACTTGAGTCTTC 59.344 37.037 0.00 0.00 36.94 2.87
4432 11132 1.000283 ACTTGAGTCTTCGGTGAGCTG 60.000 52.381 0.00 0.00 0.00 4.24
4434 11134 1.181741 TGAGTCTTCGGTGAGCTGCT 61.182 55.000 0.00 0.00 0.00 4.24
4435 11135 0.457681 GAGTCTTCGGTGAGCTGCTC 60.458 60.000 22.38 22.38 0.00 4.26
4436 11136 1.181741 AGTCTTCGGTGAGCTGCTCA 61.182 55.000 27.35 27.35 38.25 4.26
4437 11137 0.319900 GTCTTCGGTGAGCTGCTCAA 60.320 55.000 31.88 15.73 42.46 3.02
4460 11165 0.904865 AAGTGGGATCCAGTCGAGCA 60.905 55.000 15.23 0.00 35.94 4.26
4496 11201 1.971695 GTTTTCACCTGAGGGCCCG 60.972 63.158 18.44 4.09 35.63 6.13
4497 11202 2.457323 TTTTCACCTGAGGGCCCGT 61.457 57.895 18.44 4.89 35.63 5.28
4502 11207 3.775654 CCTGAGGGCCCGTCTGAC 61.776 72.222 18.44 5.68 0.00 3.51
4505 11210 2.997897 GAGGGCCCGTCTGACTGT 60.998 66.667 18.44 0.00 0.00 3.55
4519 11224 6.481976 CCGTCTGACTGTATGGCATTATTTAA 59.518 38.462 4.78 0.00 30.31 1.52
4520 11225 7.345192 CGTCTGACTGTATGGCATTATTTAAC 58.655 38.462 4.78 0.00 30.31 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.949447 AGGAACATGCTTTTCCAGTGT 58.051 42.857 14.20 0.00 44.51 3.55
1 2 5.882557 AGTATAGGAACATGCTTTTCCAGTG 59.117 40.000 14.20 0.00 44.51 3.66
3 4 8.682936 AATAGTATAGGAACATGCTTTTCCAG 57.317 34.615 14.20 0.00 44.51 3.86
57 58 9.511144 CGGACCAAATCAAATAATAAACTAACC 57.489 33.333 0.00 0.00 0.00 2.85
60 61 8.895737 GGTCGGACCAAATCAAATAATAAACTA 58.104 33.333 22.10 0.00 38.42 2.24
61 62 7.414762 CGGTCGGACCAAATCAAATAATAAACT 60.415 37.037 25.80 0.00 38.47 2.66
62 63 6.689669 CGGTCGGACCAAATCAAATAATAAAC 59.310 38.462 25.80 0.00 38.47 2.01
63 64 6.374894 ACGGTCGGACCAAATCAAATAATAAA 59.625 34.615 25.80 0.00 38.47 1.40
64 65 5.881443 ACGGTCGGACCAAATCAAATAATAA 59.119 36.000 25.80 0.00 38.47 1.40
65 66 5.430007 ACGGTCGGACCAAATCAAATAATA 58.570 37.500 25.80 0.00 38.47 0.98
66 67 4.266714 ACGGTCGGACCAAATCAAATAAT 58.733 39.130 25.80 0.00 38.47 1.28
67 68 3.677190 ACGGTCGGACCAAATCAAATAA 58.323 40.909 25.80 0.00 38.47 1.40
68 69 3.337694 ACGGTCGGACCAAATCAAATA 57.662 42.857 25.80 0.00 38.47 1.40
69 70 2.194201 ACGGTCGGACCAAATCAAAT 57.806 45.000 25.80 0.00 38.47 2.32
70 71 1.874872 GAACGGTCGGACCAAATCAAA 59.125 47.619 25.80 0.00 38.47 2.69
71 72 1.202663 TGAACGGTCGGACCAAATCAA 60.203 47.619 25.80 9.10 38.47 2.57
72 73 0.393448 TGAACGGTCGGACCAAATCA 59.607 50.000 25.80 21.15 38.47 2.57
73 74 1.515081 TTGAACGGTCGGACCAAATC 58.485 50.000 25.80 19.09 38.47 2.17
74 75 2.194201 ATTGAACGGTCGGACCAAAT 57.806 45.000 25.80 15.80 38.47 2.32
75 76 1.970092 AATTGAACGGTCGGACCAAA 58.030 45.000 25.80 14.37 38.47 3.28
76 77 1.970092 AAATTGAACGGTCGGACCAA 58.030 45.000 25.80 13.31 38.47 3.67
77 78 2.037511 ACTAAATTGAACGGTCGGACCA 59.962 45.455 25.80 7.29 38.47 4.02
78 79 2.691927 ACTAAATTGAACGGTCGGACC 58.308 47.619 17.38 17.38 34.05 4.46
79 80 3.495753 ACAACTAAATTGAACGGTCGGAC 59.504 43.478 0.00 0.00 41.23 4.79
80 81 3.495377 CACAACTAAATTGAACGGTCGGA 59.505 43.478 0.00 0.00 41.23 4.55
81 82 3.495377 TCACAACTAAATTGAACGGTCGG 59.505 43.478 0.00 0.00 41.23 4.79
82 83 4.377022 CCTCACAACTAAATTGAACGGTCG 60.377 45.833 0.00 0.00 41.23 4.79
83 84 4.612939 GCCTCACAACTAAATTGAACGGTC 60.613 45.833 0.00 0.00 41.23 4.79
84 85 3.252458 GCCTCACAACTAAATTGAACGGT 59.748 43.478 0.00 0.00 41.23 4.83
85 86 3.666902 CGCCTCACAACTAAATTGAACGG 60.667 47.826 0.00 0.00 41.23 4.44
86 87 3.185594 TCGCCTCACAACTAAATTGAACG 59.814 43.478 0.00 0.00 41.23 3.95
87 88 4.742438 TCGCCTCACAACTAAATTGAAC 57.258 40.909 0.00 0.00 41.23 3.18
88 89 5.957842 ATTCGCCTCACAACTAAATTGAA 57.042 34.783 0.00 0.00 41.23 2.69
89 90 5.957842 AATTCGCCTCACAACTAAATTGA 57.042 34.783 0.00 0.00 41.23 2.57
90 91 6.381801 AGAAATTCGCCTCACAACTAAATTG 58.618 36.000 0.00 0.00 44.60 2.32
91 92 6.431234 AGAGAAATTCGCCTCACAACTAAATT 59.569 34.615 0.00 0.00 32.07 1.82
92 93 5.940470 AGAGAAATTCGCCTCACAACTAAAT 59.060 36.000 0.00 0.00 32.07 1.40
93 94 5.305585 AGAGAAATTCGCCTCACAACTAAA 58.694 37.500 0.00 0.00 32.07 1.85
94 95 4.894784 AGAGAAATTCGCCTCACAACTAA 58.105 39.130 0.00 0.00 32.07 2.24
95 96 4.537135 AGAGAAATTCGCCTCACAACTA 57.463 40.909 0.00 0.00 32.07 2.24
96 97 3.409026 AGAGAAATTCGCCTCACAACT 57.591 42.857 0.00 0.00 32.07 3.16
97 98 4.024048 TGAAAGAGAAATTCGCCTCACAAC 60.024 41.667 0.00 0.00 32.07 3.32
98 99 4.133820 TGAAAGAGAAATTCGCCTCACAA 58.866 39.130 0.00 0.00 32.07 3.33
99 100 3.738982 TGAAAGAGAAATTCGCCTCACA 58.261 40.909 0.00 0.00 32.07 3.58
100 101 4.749245 TTGAAAGAGAAATTCGCCTCAC 57.251 40.909 0.00 0.00 32.07 3.51
101 102 5.964958 ATTTGAAAGAGAAATTCGCCTCA 57.035 34.783 0.00 0.00 32.07 3.86
102 103 7.475840 ACATATTTGAAAGAGAAATTCGCCTC 58.524 34.615 0.00 0.00 0.00 4.70
103 104 7.396540 ACATATTTGAAAGAGAAATTCGCCT 57.603 32.000 0.00 0.00 0.00 5.52
104 105 8.398665 AGTACATATTTGAAAGAGAAATTCGCC 58.601 33.333 0.00 0.00 0.00 5.54
105 106 9.774742 AAGTACATATTTGAAAGAGAAATTCGC 57.225 29.630 0.00 0.00 0.00 4.70
139 140 9.692325 AAGCTTCAAAAATATCTGACTCCTTAT 57.308 29.630 0.00 0.00 0.00 1.73
140 141 8.950210 CAAGCTTCAAAAATATCTGACTCCTTA 58.050 33.333 0.00 0.00 0.00 2.69
141 142 7.449704 ACAAGCTTCAAAAATATCTGACTCCTT 59.550 33.333 0.00 0.00 0.00 3.36
142 143 6.944862 ACAAGCTTCAAAAATATCTGACTCCT 59.055 34.615 0.00 0.00 0.00 3.69
143 144 7.120432 AGACAAGCTTCAAAAATATCTGACTCC 59.880 37.037 0.00 0.00 0.00 3.85
144 145 7.961827 CAGACAAGCTTCAAAAATATCTGACTC 59.038 37.037 0.00 0.00 34.32 3.36
145 146 7.663081 TCAGACAAGCTTCAAAAATATCTGACT 59.337 33.333 0.00 0.00 36.14 3.41
146 147 7.810658 TCAGACAAGCTTCAAAAATATCTGAC 58.189 34.615 0.00 0.00 36.14 3.51
147 148 7.360353 CGTCAGACAAGCTTCAAAAATATCTGA 60.360 37.037 0.00 2.96 38.12 3.27
148 149 6.740002 CGTCAGACAAGCTTCAAAAATATCTG 59.260 38.462 0.00 0.62 33.84 2.90
149 150 6.428159 ACGTCAGACAAGCTTCAAAAATATCT 59.572 34.615 0.00 0.00 0.00 1.98
150 151 6.603095 ACGTCAGACAAGCTTCAAAAATATC 58.397 36.000 0.00 0.00 0.00 1.63
151 152 6.560253 ACGTCAGACAAGCTTCAAAAATAT 57.440 33.333 0.00 0.00 0.00 1.28
152 153 6.371809 AACGTCAGACAAGCTTCAAAAATA 57.628 33.333 0.00 0.00 0.00 1.40
153 154 4.900635 ACGTCAGACAAGCTTCAAAAAT 57.099 36.364 0.00 0.00 0.00 1.82
154 155 4.695217 AACGTCAGACAAGCTTCAAAAA 57.305 36.364 0.00 0.00 0.00 1.94
155 156 6.926826 TCTATAACGTCAGACAAGCTTCAAAA 59.073 34.615 0.00 0.00 0.00 2.44
156 157 6.452242 TCTATAACGTCAGACAAGCTTCAAA 58.548 36.000 0.00 0.00 0.00 2.69
157 158 6.020971 TCTATAACGTCAGACAAGCTTCAA 57.979 37.500 0.00 0.00 0.00 2.69
158 159 5.638596 TCTATAACGTCAGACAAGCTTCA 57.361 39.130 0.00 0.00 0.00 3.02
159 160 5.460419 CCATCTATAACGTCAGACAAGCTTC 59.540 44.000 0.00 0.00 0.00 3.86
160 161 5.105310 ACCATCTATAACGTCAGACAAGCTT 60.105 40.000 0.41 0.00 0.00 3.74
161 162 4.402793 ACCATCTATAACGTCAGACAAGCT 59.597 41.667 0.41 0.00 0.00 3.74
162 163 4.683832 ACCATCTATAACGTCAGACAAGC 58.316 43.478 0.41 0.00 0.00 4.01
163 164 6.913132 CACTACCATCTATAACGTCAGACAAG 59.087 42.308 0.41 0.00 0.00 3.16
164 165 6.600427 TCACTACCATCTATAACGTCAGACAA 59.400 38.462 0.41 0.00 0.00 3.18
165 166 6.117488 TCACTACCATCTATAACGTCAGACA 58.883 40.000 0.41 0.00 0.00 3.41
166 167 6.615264 TCACTACCATCTATAACGTCAGAC 57.385 41.667 0.00 0.00 0.00 3.51
167 168 7.634671 TTTCACTACCATCTATAACGTCAGA 57.365 36.000 0.00 0.00 0.00 3.27
181 182 9.687210 CTGCGTTTAGTATATATTTCACTACCA 57.313 33.333 0.00 0.00 0.00 3.25
182 183 9.136952 CCTGCGTTTAGTATATATTTCACTACC 57.863 37.037 0.00 0.00 0.00 3.18
183 184 9.903682 TCCTGCGTTTAGTATATATTTCACTAC 57.096 33.333 0.00 0.00 0.00 2.73
184 185 9.903682 GTCCTGCGTTTAGTATATATTTCACTA 57.096 33.333 0.00 0.00 0.00 2.74
185 186 8.639761 AGTCCTGCGTTTAGTATATATTTCACT 58.360 33.333 0.00 0.00 0.00 3.41
186 187 8.813643 AGTCCTGCGTTTAGTATATATTTCAC 57.186 34.615 0.00 0.00 0.00 3.18
192 193 9.199982 GCAATTAAGTCCTGCGTTTAGTATATA 57.800 33.333 0.00 0.00 0.00 0.86
193 194 7.713507 TGCAATTAAGTCCTGCGTTTAGTATAT 59.286 33.333 0.00 0.00 38.97 0.86
194 195 7.042950 TGCAATTAAGTCCTGCGTTTAGTATA 58.957 34.615 0.00 0.00 38.97 1.47
195 196 5.878116 TGCAATTAAGTCCTGCGTTTAGTAT 59.122 36.000 0.00 0.00 38.97 2.12
196 197 5.239351 TGCAATTAAGTCCTGCGTTTAGTA 58.761 37.500 0.00 0.00 38.97 1.82
197 198 4.069304 TGCAATTAAGTCCTGCGTTTAGT 58.931 39.130 0.00 0.00 38.97 2.24
198 199 4.678509 TGCAATTAAGTCCTGCGTTTAG 57.321 40.909 0.00 0.00 38.97 1.85
199 200 5.182190 TCATTGCAATTAAGTCCTGCGTTTA 59.818 36.000 9.83 0.00 38.97 2.01
200 201 4.022416 TCATTGCAATTAAGTCCTGCGTTT 60.022 37.500 9.83 0.00 38.97 3.60
201 202 3.505680 TCATTGCAATTAAGTCCTGCGTT 59.494 39.130 9.83 0.00 38.97 4.84
202 203 3.081061 TCATTGCAATTAAGTCCTGCGT 58.919 40.909 9.83 0.00 38.97 5.24
203 204 3.488047 CCTCATTGCAATTAAGTCCTGCG 60.488 47.826 9.83 0.00 38.97 5.18
204 205 3.181483 CCCTCATTGCAATTAAGTCCTGC 60.181 47.826 9.83 0.00 36.60 4.85
205 206 3.382546 CCCCTCATTGCAATTAAGTCCTG 59.617 47.826 9.83 0.00 0.00 3.86
206 207 3.011708 ACCCCTCATTGCAATTAAGTCCT 59.988 43.478 9.83 0.00 0.00 3.85
207 208 3.365472 ACCCCTCATTGCAATTAAGTCC 58.635 45.455 9.83 0.00 0.00 3.85
208 209 5.885912 TCTAACCCCTCATTGCAATTAAGTC 59.114 40.000 9.83 0.00 0.00 3.01
209 210 5.826643 TCTAACCCCTCATTGCAATTAAGT 58.173 37.500 9.83 0.39 0.00 2.24
210 211 6.774656 AGATCTAACCCCTCATTGCAATTAAG 59.225 38.462 9.83 10.19 0.00 1.85
211 212 6.547141 CAGATCTAACCCCTCATTGCAATTAA 59.453 38.462 9.83 0.00 0.00 1.40
212 213 6.064060 CAGATCTAACCCCTCATTGCAATTA 58.936 40.000 9.83 0.23 0.00 1.40
213 214 4.891756 CAGATCTAACCCCTCATTGCAATT 59.108 41.667 9.83 0.00 0.00 2.32
214 215 4.467769 CAGATCTAACCCCTCATTGCAAT 58.532 43.478 5.99 5.99 0.00 3.56
215 216 3.371917 CCAGATCTAACCCCTCATTGCAA 60.372 47.826 0.00 0.00 0.00 4.08
216 217 2.173356 CCAGATCTAACCCCTCATTGCA 59.827 50.000 0.00 0.00 0.00 4.08
217 218 2.173569 ACCAGATCTAACCCCTCATTGC 59.826 50.000 0.00 0.00 0.00 3.56
218 219 3.434167 CCACCAGATCTAACCCCTCATTG 60.434 52.174 0.00 0.00 0.00 2.82
219 220 2.780010 CCACCAGATCTAACCCCTCATT 59.220 50.000 0.00 0.00 0.00 2.57
220 221 2.293856 ACCACCAGATCTAACCCCTCAT 60.294 50.000 0.00 0.00 0.00 2.90
221 222 1.080498 ACCACCAGATCTAACCCCTCA 59.920 52.381 0.00 0.00 0.00 3.86
222 223 1.880941 ACCACCAGATCTAACCCCTC 58.119 55.000 0.00 0.00 0.00 4.30
223 224 1.916181 CAACCACCAGATCTAACCCCT 59.084 52.381 0.00 0.00 0.00 4.79
224 225 1.633945 ACAACCACCAGATCTAACCCC 59.366 52.381 0.00 0.00 0.00 4.95
225 226 3.081804 CAACAACCACCAGATCTAACCC 58.918 50.000 0.00 0.00 0.00 4.11
226 227 4.003648 CTCAACAACCACCAGATCTAACC 58.996 47.826 0.00 0.00 0.00 2.85
227 228 3.437049 GCTCAACAACCACCAGATCTAAC 59.563 47.826 0.00 0.00 0.00 2.34
228 229 3.327757 AGCTCAACAACCACCAGATCTAA 59.672 43.478 0.00 0.00 0.00 2.10
229 230 2.906389 AGCTCAACAACCACCAGATCTA 59.094 45.455 0.00 0.00 0.00 1.98
230 231 1.701847 AGCTCAACAACCACCAGATCT 59.298 47.619 0.00 0.00 0.00 2.75
231 232 1.808945 CAGCTCAACAACCACCAGATC 59.191 52.381 0.00 0.00 0.00 2.75
232 233 1.546323 CCAGCTCAACAACCACCAGAT 60.546 52.381 0.00 0.00 0.00 2.90
233 234 0.179020 CCAGCTCAACAACCACCAGA 60.179 55.000 0.00 0.00 0.00 3.86
234 235 1.174712 CCCAGCTCAACAACCACCAG 61.175 60.000 0.00 0.00 0.00 4.00
235 236 1.152777 CCCAGCTCAACAACCACCA 60.153 57.895 0.00 0.00 0.00 4.17
236 237 1.903404 CCCCAGCTCAACAACCACC 60.903 63.158 0.00 0.00 0.00 4.61
237 238 0.251341 ATCCCCAGCTCAACAACCAC 60.251 55.000 0.00 0.00 0.00 4.16
238 239 0.251297 CATCCCCAGCTCAACAACCA 60.251 55.000 0.00 0.00 0.00 3.67
239 240 0.967380 CCATCCCCAGCTCAACAACC 60.967 60.000 0.00 0.00 0.00 3.77
240 241 0.038166 TCCATCCCCAGCTCAACAAC 59.962 55.000 0.00 0.00 0.00 3.32
241 242 0.038166 GTCCATCCCCAGCTCAACAA 59.962 55.000 0.00 0.00 0.00 2.83
242 243 1.685224 GTCCATCCCCAGCTCAACA 59.315 57.895 0.00 0.00 0.00 3.33
243 244 1.450312 CGTCCATCCCCAGCTCAAC 60.450 63.158 0.00 0.00 0.00 3.18
244 245 2.989639 CGTCCATCCCCAGCTCAA 59.010 61.111 0.00 0.00 0.00 3.02
245 246 3.785859 GCGTCCATCCCCAGCTCA 61.786 66.667 0.00 0.00 0.00 4.26
246 247 3.453070 GAGCGTCCATCCCCAGCTC 62.453 68.421 0.00 0.00 45.74 4.09
247 248 3.474570 GAGCGTCCATCCCCAGCT 61.475 66.667 0.00 0.00 41.29 4.24
248 249 4.899239 CGAGCGTCCATCCCCAGC 62.899 72.222 0.00 0.00 0.00 4.85
249 250 3.144120 CTCGAGCGTCCATCCCCAG 62.144 68.421 0.00 0.00 0.00 4.45
250 251 3.147595 CTCGAGCGTCCATCCCCA 61.148 66.667 0.00 0.00 0.00 4.96
251 252 3.917760 CCTCGAGCGTCCATCCCC 61.918 72.222 6.99 0.00 0.00 4.81
252 253 3.140225 GACCTCGAGCGTCCATCCC 62.140 68.421 18.10 0.00 0.00 3.85
253 254 1.668101 AAGACCTCGAGCGTCCATCC 61.668 60.000 22.57 6.17 0.00 3.51
254 255 0.526524 CAAGACCTCGAGCGTCCATC 60.527 60.000 22.57 8.12 0.00 3.51
255 256 1.251527 ACAAGACCTCGAGCGTCCAT 61.252 55.000 22.57 13.73 0.00 3.41
256 257 1.901948 ACAAGACCTCGAGCGTCCA 60.902 57.895 22.57 0.00 0.00 4.02
257 258 1.444553 CACAAGACCTCGAGCGTCC 60.445 63.158 22.57 10.76 0.00 4.79
258 259 0.318784 AACACAAGACCTCGAGCGTC 60.319 55.000 20.13 20.13 0.00 5.19
259 260 0.318784 GAACACAAGACCTCGAGCGT 60.319 55.000 6.99 6.58 0.00 5.07
260 261 1.337817 CGAACACAAGACCTCGAGCG 61.338 60.000 6.99 2.92 33.13 5.03
261 262 0.039437 TCGAACACAAGACCTCGAGC 60.039 55.000 6.99 0.00 35.52 5.03
262 263 1.267261 AGTCGAACACAAGACCTCGAG 59.733 52.381 5.13 5.13 40.68 4.04
263 264 1.315690 AGTCGAACACAAGACCTCGA 58.684 50.000 0.00 0.00 38.08 4.04
264 265 2.052157 GAAGTCGAACACAAGACCTCG 58.948 52.381 0.00 0.00 38.08 4.63
265 266 2.052157 CGAAGTCGAACACAAGACCTC 58.948 52.381 0.00 0.00 43.02 3.85
266 267 1.269621 CCGAAGTCGAACACAAGACCT 60.270 52.381 1.43 0.00 43.02 3.85
267 268 1.137513 CCGAAGTCGAACACAAGACC 58.862 55.000 1.43 0.00 43.02 3.85
268 269 1.521423 CACCGAAGTCGAACACAAGAC 59.479 52.381 1.43 0.00 43.02 3.01
269 270 1.847818 CACCGAAGTCGAACACAAGA 58.152 50.000 1.43 0.00 43.02 3.02
270 271 0.232303 GCACCGAAGTCGAACACAAG 59.768 55.000 1.43 0.00 43.02 3.16
271 272 1.484227 CGCACCGAAGTCGAACACAA 61.484 55.000 1.43 0.00 43.02 3.33
272 273 1.947146 CGCACCGAAGTCGAACACA 60.947 57.895 1.43 0.00 43.02 3.72
273 274 2.844146 CGCACCGAAGTCGAACAC 59.156 61.111 1.43 0.00 43.02 3.32
274 275 3.033764 GCGCACCGAAGTCGAACA 61.034 61.111 0.30 0.00 43.02 3.18
275 276 4.117372 CGCGCACCGAAGTCGAAC 62.117 66.667 8.75 0.00 43.02 3.95
276 277 4.634133 ACGCGCACCGAAGTCGAA 62.634 61.111 5.73 0.00 43.02 3.71
277 278 4.634133 AACGCGCACCGAAGTCGA 62.634 61.111 5.73 0.00 43.02 4.20
278 279 4.117372 GAACGCGCACCGAAGTCG 62.117 66.667 5.73 0.00 41.02 4.18
279 280 1.828331 AAAGAACGCGCACCGAAGTC 61.828 55.000 5.73 0.00 41.02 3.01
280 281 1.433837 AAAAGAACGCGCACCGAAGT 61.434 50.000 5.73 0.00 41.02 3.01
281 282 0.991770 CAAAAGAACGCGCACCGAAG 60.992 55.000 5.73 0.00 41.02 3.79
282 283 1.010574 CAAAAGAACGCGCACCGAA 60.011 52.632 5.73 0.00 41.02 4.30
283 284 1.225376 ATCAAAAGAACGCGCACCGA 61.225 50.000 5.73 0.00 41.02 4.69
284 285 0.385473 AATCAAAAGAACGCGCACCG 60.385 50.000 5.73 0.00 44.21 4.94
285 286 1.766069 AAATCAAAAGAACGCGCACC 58.234 45.000 5.73 0.00 0.00 5.01
286 287 3.834435 AAAAATCAAAAGAACGCGCAC 57.166 38.095 5.73 0.00 0.00 5.34
314 315 2.027192 TCTCCCTGTATCGCAGCTTTTT 60.027 45.455 0.00 0.00 43.71 1.94
315 316 1.555075 TCTCCCTGTATCGCAGCTTTT 59.445 47.619 0.00 0.00 43.71 2.27
316 317 1.195115 TCTCCCTGTATCGCAGCTTT 58.805 50.000 0.00 0.00 43.71 3.51
317 318 1.195115 TTCTCCCTGTATCGCAGCTT 58.805 50.000 0.00 0.00 43.71 3.74
318 319 1.342819 GATTCTCCCTGTATCGCAGCT 59.657 52.381 0.00 0.00 43.71 4.24
319 320 1.789506 GATTCTCCCTGTATCGCAGC 58.210 55.000 0.00 0.00 43.71 5.25
320 321 2.057503 CGATTCTCCCTGTATCGCAG 57.942 55.000 0.00 0.00 44.63 5.18
323 324 2.162608 CCTAGCGATTCTCCCTGTATCG 59.837 54.545 0.00 0.00 44.94 2.92
324 325 2.494073 CCCTAGCGATTCTCCCTGTATC 59.506 54.545 0.00 0.00 0.00 2.24
325 326 2.110188 TCCCTAGCGATTCTCCCTGTAT 59.890 50.000 0.00 0.00 0.00 2.29
326 327 1.497716 TCCCTAGCGATTCTCCCTGTA 59.502 52.381 0.00 0.00 0.00 2.74
327 328 0.261991 TCCCTAGCGATTCTCCCTGT 59.738 55.000 0.00 0.00 0.00 4.00
328 329 1.274728 CATCCCTAGCGATTCTCCCTG 59.725 57.143 0.00 0.00 0.00 4.45
329 330 1.148027 TCATCCCTAGCGATTCTCCCT 59.852 52.381 0.00 0.00 0.00 4.20
330 331 1.633774 TCATCCCTAGCGATTCTCCC 58.366 55.000 0.00 0.00 0.00 4.30
331 332 3.753294 TTTCATCCCTAGCGATTCTCC 57.247 47.619 0.00 0.00 0.00 3.71
350 351 3.335579 GACTCCCGCTACACTGATTTTT 58.664 45.455 0.00 0.00 0.00 1.94
351 352 2.674177 CGACTCCCGCTACACTGATTTT 60.674 50.000 0.00 0.00 0.00 1.82
352 353 1.135083 CGACTCCCGCTACACTGATTT 60.135 52.381 0.00 0.00 0.00 2.17
353 354 0.456221 CGACTCCCGCTACACTGATT 59.544 55.000 0.00 0.00 0.00 2.57
354 355 0.680280 ACGACTCCCGCTACACTGAT 60.680 55.000 0.00 0.00 43.32 2.90
355 356 1.303074 ACGACTCCCGCTACACTGA 60.303 57.895 0.00 0.00 43.32 3.41
356 357 1.154016 CACGACTCCCGCTACACTG 60.154 63.158 0.00 0.00 43.32 3.66
357 358 2.991076 GCACGACTCCCGCTACACT 61.991 63.158 0.00 0.00 43.32 3.55
358 359 2.506438 GCACGACTCCCGCTACAC 60.506 66.667 0.00 0.00 43.32 2.90
359 360 4.111016 CGCACGACTCCCGCTACA 62.111 66.667 0.00 0.00 43.32 2.74
360 361 4.849329 CCGCACGACTCCCGCTAC 62.849 72.222 0.00 0.00 43.32 3.58
364 365 3.518998 AGATCCGCACGACTCCCG 61.519 66.667 0.00 0.00 45.44 5.14
365 366 2.105128 CAGATCCGCACGACTCCC 59.895 66.667 0.00 0.00 0.00 4.30
366 367 1.078759 CAACAGATCCGCACGACTCC 61.079 60.000 0.00 0.00 0.00 3.85
367 368 1.687494 GCAACAGATCCGCACGACTC 61.687 60.000 0.00 0.00 0.00 3.36
368 369 1.738099 GCAACAGATCCGCACGACT 60.738 57.895 0.00 0.00 0.00 4.18
369 370 0.457853 TAGCAACAGATCCGCACGAC 60.458 55.000 0.00 0.00 0.00 4.34
370 371 0.245266 TTAGCAACAGATCCGCACGA 59.755 50.000 0.00 0.00 0.00 4.35
371 372 0.370273 GTTAGCAACAGATCCGCACG 59.630 55.000 0.00 0.00 0.00 5.34
372 373 0.727398 GGTTAGCAACAGATCCGCAC 59.273 55.000 0.00 0.00 0.00 5.34
373 374 0.323302 TGGTTAGCAACAGATCCGCA 59.677 50.000 0.00 0.00 0.00 5.69
374 375 0.727398 GTGGTTAGCAACAGATCCGC 59.273 55.000 0.00 0.00 0.00 5.54
375 376 1.338674 TGGTGGTTAGCAACAGATCCG 60.339 52.381 0.00 0.00 0.00 4.18
376 377 2.359900 CTGGTGGTTAGCAACAGATCC 58.640 52.381 23.23 1.50 33.25 3.36
377 378 1.740025 GCTGGTGGTTAGCAACAGATC 59.260 52.381 30.28 11.91 40.81 2.75
378 379 1.614317 GGCTGGTGGTTAGCAACAGAT 60.614 52.381 30.28 0.00 42.88 2.90
379 380 0.250727 GGCTGGTGGTTAGCAACAGA 60.251 55.000 30.28 0.00 42.88 3.41
380 381 0.250901 AGGCTGGTGGTTAGCAACAG 60.251 55.000 23.28 23.28 42.88 3.16
381 382 0.184933 AAGGCTGGTGGTTAGCAACA 59.815 50.000 1.21 1.21 42.88 3.33
382 383 1.328279 AAAGGCTGGTGGTTAGCAAC 58.672 50.000 0.00 0.00 42.88 4.17
383 384 2.888414 GTTAAAGGCTGGTGGTTAGCAA 59.112 45.455 0.00 0.00 42.88 3.91
384 385 2.158593 TGTTAAAGGCTGGTGGTTAGCA 60.159 45.455 0.00 0.00 42.88 3.49
385 386 2.510613 TGTTAAAGGCTGGTGGTTAGC 58.489 47.619 0.00 0.00 40.41 3.09
386 387 6.207810 TGTTTATGTTAAAGGCTGGTGGTTAG 59.792 38.462 0.00 0.00 0.00 2.34
387 388 6.069331 TGTTTATGTTAAAGGCTGGTGGTTA 58.931 36.000 0.00 0.00 0.00 2.85
388 389 4.896482 TGTTTATGTTAAAGGCTGGTGGTT 59.104 37.500 0.00 0.00 0.00 3.67
389 390 4.475345 TGTTTATGTTAAAGGCTGGTGGT 58.525 39.130 0.00 0.00 0.00 4.16
390 391 5.010617 AGTTGTTTATGTTAAAGGCTGGTGG 59.989 40.000 0.00 0.00 0.00 4.61
391 392 5.920273 CAGTTGTTTATGTTAAAGGCTGGTG 59.080 40.000 0.00 0.00 0.00 4.17
392 393 5.830991 TCAGTTGTTTATGTTAAAGGCTGGT 59.169 36.000 0.00 0.00 0.00 4.00
393 394 6.206634 TCTCAGTTGTTTATGTTAAAGGCTGG 59.793 38.462 0.00 0.00 0.00 4.85
394 395 7.202016 TCTCAGTTGTTTATGTTAAAGGCTG 57.798 36.000 0.00 0.00 0.00 4.85
395 396 8.409358 AATCTCAGTTGTTTATGTTAAAGGCT 57.591 30.769 0.00 0.00 0.00 4.58
396 397 9.774742 CTAATCTCAGTTGTTTATGTTAAAGGC 57.225 33.333 0.00 0.00 0.00 4.35
400 401 9.226606 CCCACTAATCTCAGTTGTTTATGTTAA 57.773 33.333 0.00 0.00 0.00 2.01
401 402 7.827236 CCCCACTAATCTCAGTTGTTTATGTTA 59.173 37.037 0.00 0.00 0.00 2.41
402 403 6.659242 CCCCACTAATCTCAGTTGTTTATGTT 59.341 38.462 0.00 0.00 0.00 2.71
403 404 6.180472 CCCCACTAATCTCAGTTGTTTATGT 58.820 40.000 0.00 0.00 0.00 2.29
404 405 6.180472 ACCCCACTAATCTCAGTTGTTTATG 58.820 40.000 0.00 0.00 0.00 1.90
405 406 6.388619 ACCCCACTAATCTCAGTTGTTTAT 57.611 37.500 0.00 0.00 0.00 1.40
406 407 5.836024 ACCCCACTAATCTCAGTTGTTTA 57.164 39.130 0.00 0.00 0.00 2.01
407 408 4.724279 ACCCCACTAATCTCAGTTGTTT 57.276 40.909 0.00 0.00 0.00 2.83
408 409 5.836024 TTACCCCACTAATCTCAGTTGTT 57.164 39.130 0.00 0.00 0.00 2.83
431 432 5.650283 TCAAATTTCTGGAAATGGGTACCT 58.350 37.500 12.72 0.00 42.35 3.08
438 439 8.932791 CAAATCTCCTTCAAATTTCTGGAAATG 58.067 33.333 9.00 0.88 40.57 2.32
441 442 6.268387 AGCAAATCTCCTTCAAATTTCTGGAA 59.732 34.615 0.00 0.00 0.00 3.53
460 2206 2.555757 GCAGAGTTCACTGGAAGCAAAT 59.444 45.455 0.00 0.00 37.60 2.32
465 2211 1.876156 GGTTGCAGAGTTCACTGGAAG 59.124 52.381 0.00 0.00 45.66 3.46
468 2214 1.071385 AGAGGTTGCAGAGTTCACTGG 59.929 52.381 0.00 0.00 38.22 4.00
470 2216 4.093011 AGATAGAGGTTGCAGAGTTCACT 58.907 43.478 0.00 0.00 0.00 3.41
476 2222 9.255304 GTTTAAATCTAGATAGAGGTTGCAGAG 57.745 37.037 5.46 0.00 35.50 3.35
480 2226 8.778358 CCATGTTTAAATCTAGATAGAGGTTGC 58.222 37.037 5.46 0.00 35.50 4.17
503 3855 6.407074 CGGTCCAGTAAAGTCTCTATTTCCAT 60.407 42.308 0.00 0.00 0.00 3.41
510 3862 3.755378 GTGTCGGTCCAGTAAAGTCTCTA 59.245 47.826 0.00 0.00 0.00 2.43
582 5538 0.163146 GTGTCGTTTTCTGGCTACGC 59.837 55.000 0.00 0.00 35.40 4.42
583 5539 0.788391 GGTGTCGTTTTCTGGCTACG 59.212 55.000 0.00 0.00 36.67 3.51
589 5547 4.372656 AGAAAGAGAGGTGTCGTTTTCTG 58.627 43.478 0.00 0.00 38.11 3.02
608 5576 1.203013 TGGAAGGACCGTCAGAGAGAA 60.203 52.381 9.75 0.00 42.61 2.87
678 5653 2.974489 GAAGACGACAGGACGCGGA 61.974 63.158 12.47 0.00 36.70 5.54
709 5696 4.650377 GATGGGATGGGAGGGCGC 62.650 72.222 0.00 0.00 0.00 6.53
710 5697 3.958860 GGATGGGATGGGAGGGCG 61.959 72.222 0.00 0.00 0.00 6.13
711 5698 3.584403 GGGATGGGATGGGAGGGC 61.584 72.222 0.00 0.00 0.00 5.19
762 5750 0.625849 AAGGGAAATGTGGCGAGGAT 59.374 50.000 0.00 0.00 0.00 3.24
827 5815 2.070650 GGAGGGAAGGGGCGTACAT 61.071 63.158 0.00 0.00 0.00 2.29
830 5818 4.810184 GGGGAGGGAAGGGGCGTA 62.810 72.222 0.00 0.00 0.00 4.42
867 5862 2.740447 GGCGGACACGAGAAAAAGTAAT 59.260 45.455 0.00 0.00 44.60 1.89
870 5865 0.106149 AGGCGGACACGAGAAAAAGT 59.894 50.000 0.00 0.00 44.60 2.66
883 5878 2.687566 GGGAGGAAGGAAGGCGGA 60.688 66.667 0.00 0.00 0.00 5.54
892 5887 0.627986 AAGGATTGCAGGGGAGGAAG 59.372 55.000 0.00 0.00 0.00 3.46
893 5888 1.005924 GAAAGGATTGCAGGGGAGGAA 59.994 52.381 0.00 0.00 0.00 3.36
908 5903 2.743636 TACAGCGGAACAGAGAAAGG 57.256 50.000 0.00 0.00 0.00 3.11
968 5963 0.881118 CTCCTCGGCTCAGAGATAGC 59.119 60.000 0.00 0.00 40.57 2.97
969 5964 2.151202 GTCTCCTCGGCTCAGAGATAG 58.849 57.143 0.00 0.00 40.57 2.08
971 5966 0.550914 AGTCTCCTCGGCTCAGAGAT 59.449 55.000 0.00 0.00 40.57 2.75
972 5967 0.107410 GAGTCTCCTCGGCTCAGAGA 60.107 60.000 0.00 0.00 40.57 3.10
973 5968 2.404083 GAGTCTCCTCGGCTCAGAG 58.596 63.158 0.00 0.00 37.97 3.35
974 5969 4.647825 GAGTCTCCTCGGCTCAGA 57.352 61.111 0.00 0.00 0.00 3.27
982 5977 4.200283 CTGGCGGCGAGTCTCCTC 62.200 72.222 12.98 0.00 0.00 3.71
983 5978 4.742649 TCTGGCGGCGAGTCTCCT 62.743 66.667 12.98 0.00 0.00 3.69
984 5979 3.532155 ATCTGGCGGCGAGTCTCC 61.532 66.667 12.98 1.37 0.00 3.71
985 5980 2.279120 CATCTGGCGGCGAGTCTC 60.279 66.667 12.98 0.00 0.00 3.36
986 5981 4.521062 GCATCTGGCGGCGAGTCT 62.521 66.667 12.98 0.00 0.00 3.24
1070 6086 4.944962 TGATGGAGTGTGAAATTAAGCG 57.055 40.909 0.00 0.00 0.00 4.68
1074 6090 8.623903 GCTTTGATATGATGGAGTGTGAAATTA 58.376 33.333 0.00 0.00 0.00 1.40
1091 6107 7.094205 ACGGAAATCAAGAACAAGCTTTGATAT 60.094 33.333 10.26 0.87 0.00 1.63
1098 6118 3.214328 ACACGGAAATCAAGAACAAGCT 58.786 40.909 0.00 0.00 0.00 3.74
1105 6125 4.280929 TCTGAGAAGACACGGAAATCAAGA 59.719 41.667 0.00 0.00 0.00 3.02
1106 6126 4.387256 GTCTGAGAAGACACGGAAATCAAG 59.613 45.833 1.04 0.00 38.59 3.02
1109 6129 4.170256 GAGTCTGAGAAGACACGGAAATC 58.830 47.826 8.47 0.00 41.02 2.17
1116 6136 4.500603 TTAACCGAGTCTGAGAAGACAC 57.499 45.455 8.47 1.42 41.02 3.67
1196 6217 2.812011 GGAAATACCACGACACAAAGCT 59.188 45.455 0.00 0.00 38.79 3.74
1209 6230 1.615392 GCAGATGGCCATGGAAATACC 59.385 52.381 26.56 7.22 36.11 2.73
1229 6257 0.825010 ACCAAGCCTCTGCAACCAAG 60.825 55.000 0.00 0.00 41.13 3.61
1246 6274 2.304516 GACACACACGCACACACACC 62.305 60.000 0.00 0.00 0.00 4.16
1256 6292 1.186408 CGTCGTTTACAGACACACACG 59.814 52.381 0.00 0.00 38.46 4.49
1281 6317 3.402628 ACGCCACAAGTTCAGTTAGAT 57.597 42.857 0.00 0.00 0.00 1.98
1283 6319 2.096909 CGAACGCCACAAGTTCAGTTAG 60.097 50.000 9.33 0.00 45.93 2.34
1294 6334 2.030412 ATGTCTGCGAACGCCACA 59.970 55.556 16.27 17.45 41.09 4.17
1342 6382 4.063689 CCATGATGATCTTGCTGAGGTAC 58.936 47.826 0.00 0.00 0.00 3.34
1444 6484 2.605601 AAGAAGGGTACGGGCGGT 60.606 61.111 2.46 2.46 0.00 5.68
1445 6485 2.186125 GAAGAAGGGTACGGGCGG 59.814 66.667 0.00 0.00 0.00 6.13
1446 6486 1.968050 ATGGAAGAAGGGTACGGGCG 61.968 60.000 0.00 0.00 0.00 6.13
1447 6487 0.179054 GATGGAAGAAGGGTACGGGC 60.179 60.000 0.00 0.00 0.00 6.13
1448 6488 1.413077 GAGATGGAAGAAGGGTACGGG 59.587 57.143 0.00 0.00 0.00 5.28
1449 6489 1.413077 GGAGATGGAAGAAGGGTACGG 59.587 57.143 0.00 0.00 0.00 4.02
1450 6490 2.362717 GAGGAGATGGAAGAAGGGTACG 59.637 54.545 0.00 0.00 0.00 3.67
1451 6491 3.375699 TGAGGAGATGGAAGAAGGGTAC 58.624 50.000 0.00 0.00 0.00 3.34
1452 6492 3.775316 GTTGAGGAGATGGAAGAAGGGTA 59.225 47.826 0.00 0.00 0.00 3.69
1467 6512 6.686484 AGTATATGTATGCATGGTTGAGGA 57.314 37.500 10.16 0.00 36.58 3.71
1546 6594 4.614555 TTGCAGCTGTGATAATTAACCG 57.385 40.909 16.64 0.00 0.00 4.44
1553 6601 3.743521 AGTCAGTTTGCAGCTGTGATAA 58.256 40.909 16.64 3.26 35.60 1.75
1574 6630 6.238566 GCATTGCTTAGCAGAGTATGATTTGA 60.239 38.462 17.59 0.00 40.61 2.69
1588 6644 4.604976 CCATTTCTACTGCATTGCTTAGC 58.395 43.478 10.49 0.00 0.00 3.09
1694 6759 0.384309 GGGCACATCAGCATCACATG 59.616 55.000 0.00 0.00 35.83 3.21
1697 6762 0.679002 ACTGGGCACATCAGCATCAC 60.679 55.000 0.00 0.00 35.78 3.06
1699 6764 0.737219 GAACTGGGCACATCAGCATC 59.263 55.000 0.00 0.00 35.78 3.91
1700 6765 0.330604 AGAACTGGGCACATCAGCAT 59.669 50.000 0.00 0.00 35.78 3.79
1701 6766 0.321919 GAGAACTGGGCACATCAGCA 60.322 55.000 0.00 0.00 35.78 4.41
1702 6767 1.028868 GGAGAACTGGGCACATCAGC 61.029 60.000 0.00 0.00 35.78 4.26
1703 6768 0.325933 TGGAGAACTGGGCACATCAG 59.674 55.000 0.00 0.00 38.16 2.90
1797 6862 4.000331 CTCTGAAGGAGTCTTTGAGCAA 58.000 45.455 0.00 0.00 37.30 3.91
1832 6897 3.673809 GCACAGTTCTGAGTAAAGTACCG 59.326 47.826 6.83 0.00 0.00 4.02
1840 6905 3.069289 CAGCAATGCACAGTTCTGAGTA 58.931 45.455 8.35 0.00 0.00 2.59
2083 7166 7.057894 TCCTCGCCAGGTTAACATAATTATTT 58.942 34.615 8.10 0.00 41.28 1.40
2089 7172 3.985019 TTCCTCGCCAGGTTAACATAA 57.015 42.857 8.10 0.00 41.28 1.90
2122 7208 7.209475 AGGACATGTGTTAAGGAACAAAAATG 58.791 34.615 1.15 1.19 46.99 2.32
2140 7226 7.042456 CGAATATTCTGTTGACCTAAGGACATG 60.042 40.741 13.45 0.00 0.00 3.21
2142 7228 6.338146 CGAATATTCTGTTGACCTAAGGACA 58.662 40.000 13.45 0.00 0.00 4.02
2143 7229 5.234543 GCGAATATTCTGTTGACCTAAGGAC 59.765 44.000 13.45 0.00 0.00 3.85
2153 7239 5.203370 GCATTCTCTGCGAATATTCTGTTG 58.797 41.667 13.45 0.00 40.33 3.33
2219 7305 2.224495 GAGGCTCAAGCGTGCTCTCT 62.224 60.000 10.25 0.00 43.26 3.10
2280 7380 2.748388 CAGGTAGGCTAGGTAGTTGGT 58.252 52.381 0.00 0.00 0.00 3.67
2310 7410 7.936847 TGATAGTACCTGTTCAAAGTGTTTCAT 59.063 33.333 0.00 0.00 0.00 2.57
2486 7586 0.321475 AAGAAGAGGCTGCAGTCTGC 60.321 55.000 28.75 18.32 45.29 4.26
2487 7587 2.075338 GAAAGAAGAGGCTGCAGTCTG 58.925 52.381 28.75 0.00 0.00 3.51
2488 7588 1.003003 GGAAAGAAGAGGCTGCAGTCT 59.997 52.381 23.48 23.48 0.00 3.24
2489 7589 1.447945 GGAAAGAAGAGGCTGCAGTC 58.552 55.000 11.28 11.28 0.00 3.51
2490 7590 0.321122 CGGAAAGAAGAGGCTGCAGT 60.321 55.000 16.64 0.00 0.00 4.40
2747 7848 5.547465 TACTCACTCAGTTACCAAATGGTG 58.453 41.667 15.31 0.00 41.92 4.17
2778 7879 6.750501 CCGATGACGTTGAAGTATCTAAAAGA 59.249 38.462 0.00 0.00 37.88 2.52
2813 7914 1.204113 CCTCACCCAGCCTTCCTTCT 61.204 60.000 0.00 0.00 0.00 2.85
2909 8010 7.331026 TGATAGAAGATGTTGGTACCTTCAAG 58.669 38.462 14.36 0.00 37.92 3.02
2921 8026 9.757227 GCAGATAAGTAGTTGATAGAAGATGTT 57.243 33.333 0.00 0.00 0.00 2.71
2930 8035 5.292765 GCAGCAGCAGATAAGTAGTTGATA 58.707 41.667 0.00 0.00 41.58 2.15
2939 8044 2.512885 CAAAACGCAGCAGCAGATAAG 58.487 47.619 0.82 0.00 42.27 1.73
2953 8058 1.506262 CGGCAGGGATTCCAAAACG 59.494 57.895 4.80 0.07 34.83 3.60
3015 8120 3.890128 GCAAGAACTTGGTAAGCAGTTC 58.110 45.455 14.95 4.60 46.38 3.01
3120 8226 2.877691 GCTTTCACGTGGGCATCC 59.122 61.111 17.00 0.00 0.00 3.51
3217 8323 9.005777 CACCATCATTCATAACATGATATGTGA 57.994 33.333 19.07 16.64 44.07 3.58
3286 8392 1.897560 CCTCCACAAACTCCTTCACC 58.102 55.000 0.00 0.00 0.00 4.02
3373 8479 1.289109 CGGGGTTGCTGTACACTTCG 61.289 60.000 0.00 0.00 0.00 3.79
3525 8747 4.767409 TGTGTAACTGCTATCTCTGTGAGT 59.233 41.667 0.00 0.00 38.04 3.41
3603 8830 1.420138 ACGAACTGGTGAACTTCCCAT 59.580 47.619 0.00 0.00 0.00 4.00
3654 8881 4.101119 ACTTAATAGCTGGCGACCATTACT 59.899 41.667 0.00 1.52 30.82 2.24
3656 8883 4.682778 ACTTAATAGCTGGCGACCATTA 57.317 40.909 0.00 0.00 30.82 1.90
3716 8943 1.556911 AGATGGACCTCGTCTGCATTT 59.443 47.619 0.00 0.00 40.07 2.32
3780 9007 9.895138 ACGGGTGAACTTATAATATTTACAAGT 57.105 29.630 0.00 0.00 0.00 3.16
3792 9019 3.936453 GTGCATGAACGGGTGAACTTATA 59.064 43.478 0.00 0.00 0.00 0.98
3793 9020 2.747446 GTGCATGAACGGGTGAACTTAT 59.253 45.455 0.00 0.00 0.00 1.73
3794 9021 2.147958 GTGCATGAACGGGTGAACTTA 58.852 47.619 0.00 0.00 0.00 2.24
3804 9031 2.663879 GCTTCTCACTTGTGCATGAACG 60.664 50.000 0.00 0.00 0.00 3.95
3822 9049 5.271549 CCATTTGGATGCATTATTGCGCTT 61.272 41.667 9.73 0.00 44.73 4.68
3833 9060 0.612453 TGAGCTGCCATTTGGATGCA 60.612 50.000 13.87 0.00 37.39 3.96
3834 9061 0.750850 ATGAGCTGCCATTTGGATGC 59.249 50.000 0.00 3.62 37.39 3.91
3835 9062 2.028876 TGATGAGCTGCCATTTGGATG 58.971 47.619 0.00 0.00 37.39 3.51
3836 9063 2.447408 TGATGAGCTGCCATTTGGAT 57.553 45.000 0.00 0.00 37.39 3.41
3837 9064 2.447408 ATGATGAGCTGCCATTTGGA 57.553 45.000 0.00 0.00 37.39 3.53
3838 9065 4.866508 ATAATGATGAGCTGCCATTTGG 57.133 40.909 7.07 0.00 33.21 3.28
3840 9067 7.770366 TCATTATAATGATGAGCTGCCATTT 57.230 32.000 21.67 1.83 40.32 2.32
3874 10385 5.645497 ACAAAGGCTGCAAATTTGTACAAAA 59.355 32.000 23.97 7.26 43.39 2.44
3890 10401 5.522097 CGTTGGTTGAATTTAAACAAAGGCT 59.478 36.000 14.33 0.00 38.82 4.58
3893 10404 7.979115 TCTCGTTGGTTGAATTTAAACAAAG 57.021 32.000 14.33 15.73 38.82 2.77
3936 10447 6.751514 TCAAGTGTGTAGTTCATTGTTGTT 57.248 33.333 0.00 0.00 0.00 2.83
3938 10449 9.169468 GTAATTCAAGTGTGTAGTTCATTGTTG 57.831 33.333 0.00 0.00 0.00 3.33
3950 10461 6.480320 GTCTCTGTTGAGTAATTCAAGTGTGT 59.520 38.462 0.00 0.00 46.09 3.72
3966 10477 4.382040 CCATGTAGTAGGTGGTCTCTGTTG 60.382 50.000 0.00 0.00 0.00 3.33
3967 10478 3.769844 CCATGTAGTAGGTGGTCTCTGTT 59.230 47.826 0.00 0.00 0.00 3.16
3973 10484 1.067212 CGCTCCATGTAGTAGGTGGTC 59.933 57.143 0.00 0.00 34.61 4.02
3977 10488 2.427453 CTCAACGCTCCATGTAGTAGGT 59.573 50.000 0.00 0.00 0.00 3.08
3978 10489 2.688446 TCTCAACGCTCCATGTAGTAGG 59.312 50.000 0.00 0.00 0.00 3.18
3981 10492 2.739932 GCATCTCAACGCTCCATGTAGT 60.740 50.000 0.00 0.00 0.00 2.73
3985 10496 3.076104 AGCATCTCAACGCTCCATG 57.924 52.632 0.00 0.00 31.16 3.66
4005 10527 4.151121 TCATTTTCTGATTGAGTTGGCCA 58.849 39.130 0.00 0.00 0.00 5.36
4006 10528 4.789012 TCATTTTCTGATTGAGTTGGCC 57.211 40.909 0.00 0.00 0.00 5.36
4007 10529 5.403466 GTGTTCATTTTCTGATTGAGTTGGC 59.597 40.000 0.00 0.00 32.72 4.52
4009 10531 7.990541 TTGTGTTCATTTTCTGATTGAGTTG 57.009 32.000 0.00 0.00 32.72 3.16
4010 10532 8.253113 AGTTTGTGTTCATTTTCTGATTGAGTT 58.747 29.630 0.00 0.00 32.72 3.01
4012 10534 9.173939 GTAGTTTGTGTTCATTTTCTGATTGAG 57.826 33.333 0.00 0.00 32.72 3.02
4013 10535 8.902806 AGTAGTTTGTGTTCATTTTCTGATTGA 58.097 29.630 0.00 0.00 32.72 2.57
4014 10536 8.961092 CAGTAGTTTGTGTTCATTTTCTGATTG 58.039 33.333 0.00 0.00 32.72 2.67
4015 10537 7.649306 GCAGTAGTTTGTGTTCATTTTCTGATT 59.351 33.333 0.00 0.00 32.72 2.57
4016 10538 7.141363 GCAGTAGTTTGTGTTCATTTTCTGAT 58.859 34.615 0.00 0.00 32.72 2.90
4017 10539 6.094742 TGCAGTAGTTTGTGTTCATTTTCTGA 59.905 34.615 0.00 0.00 0.00 3.27
4038 10560 3.145551 GGCTTGCCCCTGATGCAG 61.146 66.667 0.00 0.00 40.35 4.41
4041 10563 2.441532 CCTGGCTTGCCCCTGATG 60.442 66.667 9.35 0.00 0.00 3.07
4090 10612 0.909610 TGCTTGTGTCTAGGGAGGGG 60.910 60.000 0.00 0.00 0.00 4.79
4121 10643 5.825151 AGGCTTAATTGAGGATAAACTGCTC 59.175 40.000 0.00 0.00 42.38 4.26
4124 10646 8.506168 TTACAGGCTTAATTGAGGATAAACTG 57.494 34.615 0.00 0.00 0.00 3.16
4168 10725 1.211212 GATACGGGGGCAAAGGTAGTT 59.789 52.381 0.00 0.00 0.00 2.24
4208 10765 6.719365 CAATCATTGACCGATCTAACTTTCC 58.281 40.000 0.00 0.00 0.00 3.13
4216 10915 5.345702 CAAATTGCAATCATTGACCGATCT 58.654 37.500 13.38 0.00 0.00 2.75
4219 10918 3.252400 GCAAATTGCAATCATTGACCGA 58.748 40.909 22.30 0.00 44.26 4.69
4290 10989 2.622942 GACAACCATTGAGCAGTTTGGA 59.377 45.455 3.17 0.00 33.36 3.53
4299 10998 4.157105 TGATTGCAGATGACAACCATTGAG 59.843 41.667 0.00 0.00 35.17 3.02
4306 11005 4.149396 GCTTTTGTGATTGCAGATGACAAC 59.851 41.667 11.29 1.48 0.00 3.32
4319 11018 5.863397 CGTTTATGGTGAATGCTTTTGTGAT 59.137 36.000 0.00 0.00 0.00 3.06
4356 11055 9.884636 TTGTATCTTAATGCTACATTGTACAGT 57.115 29.630 3.11 0.00 28.90 3.55
4394 11094 8.691661 ACTCAAGTTGTCAATTAGGTACAAAT 57.308 30.769 2.11 0.00 35.08 2.32
4407 11107 2.429250 TCACCGAAGACTCAAGTTGTCA 59.571 45.455 2.11 0.00 36.94 3.58
4420 11120 0.601046 TGTTGAGCAGCTCACCGAAG 60.601 55.000 25.37 0.00 40.46 3.79
4423 11123 0.601046 TTCTGTTGAGCAGCTCACCG 60.601 55.000 25.37 15.29 44.66 4.94
4432 11132 1.003580 TGGATCCCACTTCTGTTGAGC 59.996 52.381 9.90 0.00 0.00 4.26
4434 11134 2.303022 GACTGGATCCCACTTCTGTTGA 59.697 50.000 9.90 0.00 0.00 3.18
4435 11135 2.704572 GACTGGATCCCACTTCTGTTG 58.295 52.381 9.90 0.00 0.00 3.33
4436 11136 1.276421 CGACTGGATCCCACTTCTGTT 59.724 52.381 9.90 0.00 0.00 3.16
4437 11137 0.898320 CGACTGGATCCCACTTCTGT 59.102 55.000 9.90 0.00 0.00 3.41
4445 11150 0.537188 TTTCTGCTCGACTGGATCCC 59.463 55.000 9.90 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.