Multiple sequence alignment - TraesCS5A01G291200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G291200 chr5A 100.000 2801 0 0 1 2801 502070717 502073517 0.000000e+00 5173.0
1 TraesCS5A01G291200 chr5A 100.000 44 0 0 452 495 502071124 502071167 6.430000e-12 82.4
2 TraesCS5A01G291200 chr5A 100.000 44 0 0 408 451 502071168 502071211 6.430000e-12 82.4
3 TraesCS5A01G291200 chr5A 92.683 41 3 0 1504 1544 680843356 680843316 3.010000e-05 60.2
4 TraesCS5A01G291200 chr5D 88.889 2259 113 50 452 2657 396369467 396371640 0.000000e+00 2654.0
5 TraesCS5A01G291200 chr5D 89.542 306 8 13 1 294 396369040 396369333 1.590000e-97 366.0
6 TraesCS5A01G291200 chr5D 94.783 115 6 0 2686 2800 413146995 413147109 2.220000e-41 180.0
7 TraesCS5A01G291200 chr5D 87.826 115 14 0 2686 2800 563393270 563393156 4.870000e-28 135.0
8 TraesCS5A01G291200 chr5B 89.918 2083 103 41 452 2500 476169480 476171489 0.000000e+00 2584.0
9 TraesCS5A01G291200 chr5B 87.013 308 17 9 1 294 476169034 476169332 2.690000e-85 326.0
10 TraesCS5A01G291200 chr5B 92.086 139 11 0 2491 2629 476173292 476173430 2.200000e-46 196.0
11 TraesCS5A01G291200 chr5B 85.333 150 10 6 291 440 476169375 476169512 8.090000e-31 145.0
12 TraesCS5A01G291200 chr5B 97.143 35 1 0 1507 1541 535700294 535700328 3.010000e-05 60.2
13 TraesCS5A01G291200 chr7A 93.913 115 7 0 2686 2800 173119891 173120005 1.030000e-39 174.0
14 TraesCS5A01G291200 chr4B 93.913 115 7 0 2686 2800 52240597 52240711 1.030000e-39 174.0
15 TraesCS5A01G291200 chr4B 92.683 41 3 0 1504 1544 643311116 643311076 3.010000e-05 60.2
16 TraesCS5A01G291200 chr2D 93.805 113 7 0 2688 2800 8558521 8558633 1.330000e-38 171.0
17 TraesCS5A01G291200 chr2D 90.400 125 10 1 2678 2800 570663984 570664108 2.230000e-36 163.0
18 TraesCS5A01G291200 chr6A 93.043 115 8 0 2686 2800 186682697 186682583 4.800000e-38 169.0
19 TraesCS5A01G291200 chr6A 95.122 41 2 0 1511 1551 30190853 30190813 6.480000e-07 65.8
20 TraesCS5A01G291200 chr4A 90.435 115 11 0 2686 2800 441925435 441925321 4.830000e-33 152.0
21 TraesCS5A01G291200 chr3B 86.842 114 15 0 2686 2799 450860970 450860857 8.140000e-26 128.0
22 TraesCS5A01G291200 chr6B 95.349 43 1 1 1511 1552 51580035 51579993 1.800000e-07 67.6
23 TraesCS5A01G291200 chr6D 93.333 45 2 1 1511 1554 27819924 27819880 6.480000e-07 65.8
24 TraesCS5A01G291200 chr4D 94.595 37 2 0 1508 1544 500023785 500023749 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G291200 chr5A 502070717 502073517 2800 False 1779.266667 5173 100.0000 1 2801 3 chr5A.!!$F1 2800
1 TraesCS5A01G291200 chr5D 396369040 396371640 2600 False 1510.000000 2654 89.2155 1 2657 2 chr5D.!!$F2 2656
2 TraesCS5A01G291200 chr5B 476169034 476173430 4396 False 812.750000 2584 88.5875 1 2629 4 chr5B.!!$F2 2628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 535 0.034756 TGTGTCGTAGCACTGCCATT 59.965 50.0 0.0 0.0 39.89 3.16 F
1223 1320 0.033601 TGCCCGCCCAAAGACATTAT 60.034 50.0 0.0 0.0 0.00 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1396 0.318107 CTGCAGCAACCAACCGAAAG 60.318 55.000 0.00 0.0 0.0 2.62 R
2633 4577 1.387756 GCATGCAATCAAACGCTTCAC 59.612 47.619 14.21 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.293699 AGAAATAGTTTAAGGGTTGCTAATGG 57.706 34.615 0.00 0.00 0.00 3.16
45 46 7.893833 AGAAATAGTTTAAGGGTTGCTAATGGT 59.106 33.333 0.00 0.00 0.00 3.55
46 47 7.404671 AATAGTTTAAGGGTTGCTAATGGTG 57.595 36.000 0.00 0.00 0.00 4.17
47 48 4.086457 AGTTTAAGGGTTGCTAATGGTGG 58.914 43.478 0.00 0.00 0.00 4.61
143 155 0.598065 GTTCCCAGTTCACATGTGGC 59.402 55.000 25.16 17.63 0.00 5.01
144 156 0.888736 TTCCCAGTTCACATGTGGCG 60.889 55.000 25.16 11.11 0.00 5.69
145 157 2.562912 CCAGTTCACATGTGGCGC 59.437 61.111 25.16 14.96 0.00 6.53
146 158 2.562912 CAGTTCACATGTGGCGCC 59.437 61.111 25.16 22.73 0.00 6.53
147 159 2.112928 AGTTCACATGTGGCGCCA 59.887 55.556 29.03 29.03 0.00 5.69
148 160 1.303561 AGTTCACATGTGGCGCCAT 60.304 52.632 35.23 16.02 0.00 4.40
149 161 1.153978 GTTCACATGTGGCGCCATG 60.154 57.895 35.23 29.40 46.14 3.66
150 162 2.341875 TTCACATGTGGCGCCATGG 61.342 57.895 35.23 25.88 45.21 3.66
151 163 4.501714 CACATGTGGCGCCATGGC 62.502 66.667 35.23 27.67 45.21 4.40
152 164 4.746309 ACATGTGGCGCCATGGCT 62.746 61.111 35.23 14.80 45.21 4.75
153 165 4.201679 CATGTGGCGCCATGGCTG 62.202 66.667 35.23 25.88 45.14 4.85
169 181 2.963101 TGGCTGGTAGCTTGTATCGTAT 59.037 45.455 0.00 0.00 41.99 3.06
170 182 3.005472 TGGCTGGTAGCTTGTATCGTATC 59.995 47.826 0.00 0.00 41.99 2.24
171 183 3.005472 GGCTGGTAGCTTGTATCGTATCA 59.995 47.826 0.00 0.00 41.99 2.15
172 184 3.982058 GCTGGTAGCTTGTATCGTATCAC 59.018 47.826 0.00 0.00 38.45 3.06
173 185 4.499188 GCTGGTAGCTTGTATCGTATCACA 60.499 45.833 0.00 0.00 38.45 3.58
176 188 6.675026 TGGTAGCTTGTATCGTATCACATAC 58.325 40.000 0.00 0.00 0.00 2.39
183 201 7.693120 GCTTGTATCGTATCACATACTAGTAGC 59.307 40.741 8.85 0.00 33.45 3.58
253 271 6.089920 TGTTGATTAGCGTAAAAGACATCG 57.910 37.500 0.00 0.00 0.00 3.84
257 275 1.347221 GCGTAAAAGACATCGCCCG 59.653 57.895 0.00 0.00 42.33 6.13
332 404 5.057819 ACATCTCTCAAGCAAGAGCATATG 58.942 41.667 0.00 0.00 45.49 1.78
354 429 1.539929 GGTATCAGTAGCTGCCAGCAG 60.540 57.143 20.53 15.34 45.56 4.24
422 501 2.739287 CGCCAGGCCATTACGTACTTAA 60.739 50.000 5.01 0.00 0.00 1.85
423 502 3.272581 GCCAGGCCATTACGTACTTAAA 58.727 45.455 5.01 0.00 0.00 1.52
428 507 6.970613 CCAGGCCATTACGTACTTAAAATTTC 59.029 38.462 5.01 0.00 0.00 2.17
444 523 9.801714 CTTAAAATTTCTATACGTTTGTGTCGT 57.198 29.630 0.00 0.00 43.86 4.34
447 526 5.997732 TTTCTATACGTTTGTGTCGTAGC 57.002 39.130 0.00 0.00 44.75 3.58
452 531 0.111266 CGTTTGTGTCGTAGCACTGC 60.111 55.000 0.00 0.00 39.89 4.40
453 532 0.234884 GTTTGTGTCGTAGCACTGCC 59.765 55.000 0.00 0.00 39.89 4.85
454 533 0.179070 TTTGTGTCGTAGCACTGCCA 60.179 50.000 0.00 0.00 39.89 4.92
456 535 0.034756 TGTGTCGTAGCACTGCCATT 59.965 50.000 0.00 0.00 39.89 3.16
457 536 1.273886 TGTGTCGTAGCACTGCCATTA 59.726 47.619 0.00 0.00 39.89 1.90
458 537 1.659098 GTGTCGTAGCACTGCCATTAC 59.341 52.381 0.00 0.00 36.51 1.89
459 538 0.921347 GTCGTAGCACTGCCATTACG 59.079 55.000 12.72 12.72 39.99 3.18
460 539 0.528924 TCGTAGCACTGCCATTACGT 59.471 50.000 16.47 0.00 39.70 3.57
461 540 1.744522 TCGTAGCACTGCCATTACGTA 59.255 47.619 16.47 0.00 39.70 3.57
462 541 1.850441 CGTAGCACTGCCATTACGTAC 59.150 52.381 11.32 0.41 35.45 3.67
463 542 2.479049 CGTAGCACTGCCATTACGTACT 60.479 50.000 11.32 0.00 35.45 2.73
464 543 2.762535 AGCACTGCCATTACGTACTT 57.237 45.000 0.00 0.00 0.00 2.24
465 544 3.880047 AGCACTGCCATTACGTACTTA 57.120 42.857 0.00 0.00 0.00 2.24
466 545 4.196626 AGCACTGCCATTACGTACTTAA 57.803 40.909 0.00 0.00 0.00 1.85
467 546 4.571919 AGCACTGCCATTACGTACTTAAA 58.428 39.130 0.00 0.00 0.00 1.52
468 547 4.998672 AGCACTGCCATTACGTACTTAAAA 59.001 37.500 0.00 0.00 0.00 1.52
469 548 5.646360 AGCACTGCCATTACGTACTTAAAAT 59.354 36.000 0.00 0.00 0.00 1.82
470 549 6.150474 AGCACTGCCATTACGTACTTAAAATT 59.850 34.615 0.00 0.00 0.00 1.82
471 550 6.804783 GCACTGCCATTACGTACTTAAAATTT 59.195 34.615 0.00 0.00 0.00 1.82
472 551 7.007995 GCACTGCCATTACGTACTTAAAATTTC 59.992 37.037 0.00 0.00 0.00 2.17
473 552 8.234546 CACTGCCATTACGTACTTAAAATTTCT 58.765 33.333 0.00 0.00 0.00 2.52
474 553 9.439500 ACTGCCATTACGTACTTAAAATTTCTA 57.561 29.630 0.00 0.00 0.00 2.10
487 566 9.801714 ACTTAAAATTTCTATACGTTTGTGTCG 57.198 29.630 0.00 0.00 0.00 4.35
488 567 9.801714 CTTAAAATTTCTATACGTTTGTGTCGT 57.198 29.630 0.00 0.00 43.86 4.34
491 570 5.997732 TTTCTATACGTTTGTGTCGTAGC 57.002 39.130 0.00 0.00 44.75 3.58
504 583 6.499234 TGTGTCGTAGCACTAGTTTATACA 57.501 37.500 0.00 0.00 39.89 2.29
510 589 8.676761 GTCGTAGCACTAGTTTATACAAATACG 58.323 37.037 0.00 0.00 34.15 3.06
563 643 6.484643 ACAAGGATTATACATGACATGACAGC 59.515 38.462 22.19 5.25 0.00 4.40
576 662 5.519927 TGACATGACAGCGTCAAATACATAG 59.480 40.000 13.81 2.69 45.96 2.23
577 663 5.660460 ACATGACAGCGTCAAATACATAGA 58.340 37.500 13.81 0.00 45.96 1.98
578 664 5.520288 ACATGACAGCGTCAAATACATAGAC 59.480 40.000 13.81 0.00 45.96 2.59
580 666 5.474825 TGACAGCGTCAAATACATAGACAA 58.525 37.500 8.59 0.00 39.78 3.18
581 667 5.929415 TGACAGCGTCAAATACATAGACAAA 59.071 36.000 8.59 0.00 39.78 2.83
582 668 6.593770 TGACAGCGTCAAATACATAGACAAAT 59.406 34.615 8.59 0.00 39.78 2.32
583 669 7.762159 TGACAGCGTCAAATACATAGACAAATA 59.238 33.333 8.59 0.00 39.78 1.40
584 670 8.487313 ACAGCGTCAAATACATAGACAAATAA 57.513 30.769 0.00 0.00 32.68 1.40
585 671 8.388103 ACAGCGTCAAATACATAGACAAATAAC 58.612 33.333 0.00 0.00 32.68 1.89
586 672 8.604035 CAGCGTCAAATACATAGACAAATAACT 58.396 33.333 0.00 0.00 32.68 2.24
587 673 9.811995 AGCGTCAAATACATAGACAAATAACTA 57.188 29.630 0.00 0.00 32.68 2.24
672 758 5.651172 TCTACAAATGTATTCATTCGGCG 57.349 39.130 0.00 0.00 42.60 6.46
710 797 1.192146 TCGACTGGAAGAGTTGGGGG 61.192 60.000 0.00 0.00 36.77 5.40
885 979 1.063642 TCCACTCATCGACCTCCTCAT 60.064 52.381 0.00 0.00 0.00 2.90
888 982 2.293122 CACTCATCGACCTCCTCATCTC 59.707 54.545 0.00 0.00 0.00 2.75
889 983 2.174639 ACTCATCGACCTCCTCATCTCT 59.825 50.000 0.00 0.00 0.00 3.10
890 984 2.813754 CTCATCGACCTCCTCATCTCTC 59.186 54.545 0.00 0.00 0.00 3.20
910 1004 2.028748 TCCTCTACCAAAACTGTACCGC 60.029 50.000 0.00 0.00 0.00 5.68
931 1025 2.025887 CCAGAATTGTACTGCCTTCCCT 60.026 50.000 0.00 0.00 34.47 4.20
933 1027 2.025887 AGAATTGTACTGCCTTCCCTGG 60.026 50.000 0.00 0.00 0.00 4.45
1017 1114 1.958205 GATGGAGAAGATGCGGGCG 60.958 63.158 0.00 0.00 0.00 6.13
1220 1317 2.676471 GTGCCCGCCCAAAGACAT 60.676 61.111 0.00 0.00 0.00 3.06
1221 1318 2.117206 TGCCCGCCCAAAGACATT 59.883 55.556 0.00 0.00 0.00 2.71
1222 1319 0.963355 GTGCCCGCCCAAAGACATTA 60.963 55.000 0.00 0.00 0.00 1.90
1223 1320 0.033601 TGCCCGCCCAAAGACATTAT 60.034 50.000 0.00 0.00 0.00 1.28
1224 1321 1.111277 GCCCGCCCAAAGACATTATT 58.889 50.000 0.00 0.00 0.00 1.40
1225 1322 2.303175 GCCCGCCCAAAGACATTATTA 58.697 47.619 0.00 0.00 0.00 0.98
1226 1323 2.691011 GCCCGCCCAAAGACATTATTAA 59.309 45.455 0.00 0.00 0.00 1.40
1227 1324 3.320826 GCCCGCCCAAAGACATTATTAAT 59.679 43.478 0.00 0.00 0.00 1.40
1228 1325 4.202212 GCCCGCCCAAAGACATTATTAATT 60.202 41.667 0.00 0.00 0.00 1.40
1229 1326 5.010213 GCCCGCCCAAAGACATTATTAATTA 59.990 40.000 0.00 0.00 0.00 1.40
1230 1327 6.677913 CCCGCCCAAAGACATTATTAATTAG 58.322 40.000 0.00 0.00 0.00 1.73
1243 1340 8.405531 ACATTATTAATTAGTTCTTGCACGCAT 58.594 29.630 0.00 0.00 0.00 4.73
1245 1342 5.621197 TTAATTAGTTCTTGCACGCATGT 57.379 34.783 5.00 0.00 0.00 3.21
1246 1343 3.747099 ATTAGTTCTTGCACGCATGTC 57.253 42.857 5.00 1.33 0.00 3.06
1247 1344 1.438651 TAGTTCTTGCACGCATGTCC 58.561 50.000 5.00 0.00 0.00 4.02
1248 1345 0.250467 AGTTCTTGCACGCATGTCCT 60.250 50.000 5.00 0.60 0.00 3.85
1272 1369 8.768955 CCTCATGAAAATTACTACAGTATGAGC 58.231 37.037 0.00 0.00 39.69 4.26
1278 1375 9.535878 GAAAATTACTACAGTATGAGCTAAGCT 57.464 33.333 0.00 0.00 43.88 3.74
1279 1376 9.892130 AAAATTACTACAGTATGAGCTAAGCTT 57.108 29.630 3.48 3.48 39.88 3.74
1280 1377 9.535878 AAATTACTACAGTATGAGCTAAGCTTC 57.464 33.333 0.00 0.00 39.88 3.86
1282 1379 6.385649 ACTACAGTATGAGCTAAGCTTCTC 57.614 41.667 0.00 5.09 39.88 2.87
1283 1380 5.888724 ACTACAGTATGAGCTAAGCTTCTCA 59.111 40.000 17.42 17.42 39.88 3.27
1284 1381 5.667539 ACAGTATGAGCTAAGCTTCTCAA 57.332 39.130 18.61 8.29 41.96 3.02
1285 1382 5.415221 ACAGTATGAGCTAAGCTTCTCAAC 58.585 41.667 18.61 16.57 41.96 3.18
1286 1383 5.186797 ACAGTATGAGCTAAGCTTCTCAACT 59.813 40.000 18.61 17.96 41.96 3.16
1287 1384 6.378564 ACAGTATGAGCTAAGCTTCTCAACTA 59.621 38.462 18.61 7.79 41.96 2.24
1294 1391 5.582665 AGCTAAGCTTCTCAACTAATTTCGG 59.417 40.000 0.00 0.00 33.89 4.30
1299 1396 2.613691 TCTCAACTAATTTCGGTCCGC 58.386 47.619 6.34 0.00 0.00 5.54
1564 1661 2.966309 GCGGCGGAACAGAACAAGG 61.966 63.158 9.78 0.00 0.00 3.61
1892 2008 4.225267 CCTTCCTTGTACCTGTCCTTGTAT 59.775 45.833 0.00 0.00 0.00 2.29
1893 2009 5.424252 CCTTCCTTGTACCTGTCCTTGTATA 59.576 44.000 0.00 0.00 0.00 1.47
1938 2054 4.118168 ACCATGAGAATTGGGTTGAAGT 57.882 40.909 0.00 0.00 38.64 3.01
1939 2055 4.082125 ACCATGAGAATTGGGTTGAAGTC 58.918 43.478 0.00 0.00 38.64 3.01
1940 2056 4.202609 ACCATGAGAATTGGGTTGAAGTCT 60.203 41.667 0.00 0.00 38.64 3.24
1941 2057 4.768968 CCATGAGAATTGGGTTGAAGTCTT 59.231 41.667 0.00 0.00 30.64 3.01
1942 2058 5.336213 CCATGAGAATTGGGTTGAAGTCTTG 60.336 44.000 0.00 0.00 30.64 3.02
1943 2059 5.047566 TGAGAATTGGGTTGAAGTCTTGA 57.952 39.130 0.00 0.00 30.64 3.02
1944 2060 5.445069 TGAGAATTGGGTTGAAGTCTTGAA 58.555 37.500 0.00 0.00 30.64 2.69
1945 2061 5.532406 TGAGAATTGGGTTGAAGTCTTGAAG 59.468 40.000 0.00 0.00 30.64 3.02
1954 2070 6.238511 GGGTTGAAGTCTTGAAGAGAAGAAAC 60.239 42.308 0.00 0.00 35.79 2.78
2032 2148 1.201855 CGCTCACTCATCAACGAAAGC 60.202 52.381 0.00 0.00 0.00 3.51
2036 2152 2.475111 TCACTCATCAACGAAAGCGAAC 59.525 45.455 0.00 0.00 41.64 3.95
2037 2153 2.220824 CACTCATCAACGAAAGCGAACA 59.779 45.455 0.00 0.00 41.64 3.18
2078 2195 5.292765 CAGGAACATATAACATCAGTCGCT 58.707 41.667 0.00 0.00 0.00 4.93
2079 2196 5.403766 CAGGAACATATAACATCAGTCGCTC 59.596 44.000 0.00 0.00 0.00 5.03
2080 2197 4.383052 GGAACATATAACATCAGTCGCTCG 59.617 45.833 0.00 0.00 0.00 5.03
2081 2198 3.309388 ACATATAACATCAGTCGCTCGC 58.691 45.455 0.00 0.00 0.00 5.03
2103 2220 2.699809 GCAGCTGCAACTCGATCG 59.300 61.111 33.36 9.36 41.59 3.69
2195 2316 4.514781 AAATTAGAAACGGAGGCCAAAC 57.485 40.909 5.01 0.00 0.00 2.93
2216 2337 3.816920 CAACGCTGTCGCTCGTCG 61.817 66.667 0.00 0.00 38.03 5.12
2249 2370 1.542187 CGACGGGAAGAAAGGGACCT 61.542 60.000 0.00 0.00 0.00 3.85
2251 2372 1.377333 CGGGAAGAAAGGGACCTGC 60.377 63.158 0.00 0.00 0.00 4.85
2297 2418 1.597854 CAAGCTCTGCACGTCCCAA 60.598 57.895 0.00 0.00 0.00 4.12
2298 2419 1.302033 AAGCTCTGCACGTCCCAAG 60.302 57.895 0.00 0.00 0.00 3.61
2299 2420 1.758440 AAGCTCTGCACGTCCCAAGA 61.758 55.000 0.00 0.00 0.00 3.02
2300 2421 1.739562 GCTCTGCACGTCCCAAGAG 60.740 63.158 8.32 8.32 0.00 2.85
2301 2422 1.079543 CTCTGCACGTCCCAAGAGG 60.080 63.158 0.00 0.00 0.00 3.69
2302 2423 2.743928 CTGCACGTCCCAAGAGGC 60.744 66.667 0.00 0.00 34.51 4.70
2482 2614 1.135517 GTCTCACGGCTCTGAACTCTC 60.136 57.143 0.00 0.00 0.00 3.20
2487 2625 1.446966 GGCTCTGAACTCTCCGTGC 60.447 63.158 0.00 0.00 0.00 5.34
2572 4516 2.296190 CCCCTTTTTCTGCCAGTACAAC 59.704 50.000 0.00 0.00 0.00 3.32
2576 4520 2.902705 TTTCTGCCAGTACAACGAGT 57.097 45.000 0.00 0.00 0.00 4.18
2629 4573 1.173913 GGGCCGCTACACAGAAAAAT 58.826 50.000 0.00 0.00 0.00 1.82
2633 4577 3.309954 GGCCGCTACACAGAAAAATCTAG 59.690 47.826 0.00 0.00 0.00 2.43
2637 4581 5.637810 CCGCTACACAGAAAAATCTAGTGAA 59.362 40.000 12.23 0.00 34.47 3.18
2645 4589 6.260050 ACAGAAAAATCTAGTGAAGCGTTTGA 59.740 34.615 0.00 0.00 0.00 2.69
2650 4594 3.398406 TCTAGTGAAGCGTTTGATTGCA 58.602 40.909 0.00 0.00 0.00 4.08
2657 4601 2.801063 AGCGTTTGATTGCATGCATAC 58.199 42.857 23.37 18.21 0.00 2.39
2658 4602 2.164017 AGCGTTTGATTGCATGCATACA 59.836 40.909 23.37 20.57 0.00 2.29
2659 4603 2.922387 GCGTTTGATTGCATGCATACAA 59.078 40.909 23.37 24.70 0.00 2.41
2660 4604 3.241741 GCGTTTGATTGCATGCATACAAC 60.242 43.478 27.56 22.15 0.00 3.32
2661 4605 3.001856 CGTTTGATTGCATGCATACAACG 60.002 43.478 27.56 27.02 0.00 4.10
2662 4606 3.846423 TTGATTGCATGCATACAACGT 57.154 38.095 23.37 0.00 0.00 3.99
2663 4607 4.954092 TTGATTGCATGCATACAACGTA 57.046 36.364 23.37 3.69 0.00 3.57
2664 4608 4.954092 TGATTGCATGCATACAACGTAA 57.046 36.364 23.37 2.83 0.00 3.18
2665 4609 5.497635 TGATTGCATGCATACAACGTAAT 57.502 34.783 23.37 8.43 0.00 1.89
2666 4610 5.509771 TGATTGCATGCATACAACGTAATC 58.490 37.500 23.37 17.46 36.14 1.75
2667 4611 4.954092 TTGCATGCATACAACGTAATCA 57.046 36.364 23.37 0.00 0.00 2.57
2668 4612 4.954092 TGCATGCATACAACGTAATCAA 57.046 36.364 18.46 0.00 0.00 2.57
2669 4613 5.302357 TGCATGCATACAACGTAATCAAA 57.698 34.783 18.46 0.00 0.00 2.69
2670 4614 5.331098 TGCATGCATACAACGTAATCAAAG 58.669 37.500 18.46 0.00 0.00 2.77
2671 4615 5.123027 TGCATGCATACAACGTAATCAAAGA 59.877 36.000 18.46 0.00 0.00 2.52
2672 4616 6.183360 TGCATGCATACAACGTAATCAAAGAT 60.183 34.615 18.46 0.00 0.00 2.40
2673 4617 6.141211 GCATGCATACAACGTAATCAAAGATG 59.859 38.462 14.21 0.00 0.00 2.90
2674 4618 6.976636 TGCATACAACGTAATCAAAGATGA 57.023 33.333 0.00 0.00 40.57 2.92
2675 4619 7.371126 TGCATACAACGTAATCAAAGATGAA 57.629 32.000 0.00 0.00 39.49 2.57
2676 4620 7.811653 TGCATACAACGTAATCAAAGATGAAA 58.188 30.769 0.00 0.00 39.49 2.69
2677 4621 8.293157 TGCATACAACGTAATCAAAGATGAAAA 58.707 29.630 0.00 0.00 39.49 2.29
2678 4622 9.123709 GCATACAACGTAATCAAAGATGAAAAA 57.876 29.630 0.00 0.00 39.49 1.94
2684 4628 9.774742 AACGTAATCAAAGATGAAAAAGATAGC 57.225 29.630 0.00 0.00 39.49 2.97
2685 4629 8.398665 ACGTAATCAAAGATGAAAAAGATAGCC 58.601 33.333 0.00 0.00 39.49 3.93
2686 4630 8.616076 CGTAATCAAAGATGAAAAAGATAGCCT 58.384 33.333 0.00 0.00 39.49 4.58
2701 4645 6.759497 AGATAGCCTTTTACATTTGTGTCC 57.241 37.500 0.00 0.00 0.00 4.02
2702 4646 6.485171 AGATAGCCTTTTACATTTGTGTCCT 58.515 36.000 0.00 0.00 0.00 3.85
2703 4647 6.948309 AGATAGCCTTTTACATTTGTGTCCTT 59.052 34.615 0.00 0.00 0.00 3.36
2704 4648 8.107095 AGATAGCCTTTTACATTTGTGTCCTTA 58.893 33.333 0.00 0.00 0.00 2.69
2705 4649 6.969993 AGCCTTTTACATTTGTGTCCTTAA 57.030 33.333 0.00 0.00 0.00 1.85
2706 4650 6.745116 AGCCTTTTACATTTGTGTCCTTAAC 58.255 36.000 0.00 0.00 0.00 2.01
2707 4651 6.549736 AGCCTTTTACATTTGTGTCCTTAACT 59.450 34.615 0.00 0.00 0.00 2.24
2708 4652 6.861572 GCCTTTTACATTTGTGTCCTTAACTC 59.138 38.462 0.00 0.00 0.00 3.01
2709 4653 7.075741 CCTTTTACATTTGTGTCCTTAACTCG 58.924 38.462 0.00 0.00 0.00 4.18
2710 4654 7.041644 CCTTTTACATTTGTGTCCTTAACTCGA 60.042 37.037 0.00 0.00 0.00 4.04
2711 4655 7.789273 TTTACATTTGTGTCCTTAACTCGAA 57.211 32.000 0.00 0.00 31.17 3.71
2712 4656 5.668558 ACATTTGTGTCCTTAACTCGAAC 57.331 39.130 0.00 0.00 29.75 3.95
2713 4657 4.514066 ACATTTGTGTCCTTAACTCGAACC 59.486 41.667 0.00 0.00 29.75 3.62
2714 4658 2.825861 TGTGTCCTTAACTCGAACCC 57.174 50.000 0.00 0.00 0.00 4.11
2715 4659 2.040939 TGTGTCCTTAACTCGAACCCA 58.959 47.619 0.00 0.00 0.00 4.51
2716 4660 2.224113 TGTGTCCTTAACTCGAACCCAC 60.224 50.000 0.00 0.00 0.00 4.61
2717 4661 2.036862 GTGTCCTTAACTCGAACCCACT 59.963 50.000 0.00 0.00 0.00 4.00
2718 4662 3.256631 GTGTCCTTAACTCGAACCCACTA 59.743 47.826 0.00 0.00 0.00 2.74
2719 4663 3.256631 TGTCCTTAACTCGAACCCACTAC 59.743 47.826 0.00 0.00 0.00 2.73
2720 4664 3.509184 GTCCTTAACTCGAACCCACTACT 59.491 47.826 0.00 0.00 0.00 2.57
2721 4665 3.760684 TCCTTAACTCGAACCCACTACTC 59.239 47.826 0.00 0.00 0.00 2.59
2722 4666 3.508793 CCTTAACTCGAACCCACTACTCA 59.491 47.826 0.00 0.00 0.00 3.41
2723 4667 4.483311 CTTAACTCGAACCCACTACTCAC 58.517 47.826 0.00 0.00 0.00 3.51
2724 4668 1.991121 ACTCGAACCCACTACTCACA 58.009 50.000 0.00 0.00 0.00 3.58
2725 4669 2.526432 ACTCGAACCCACTACTCACAT 58.474 47.619 0.00 0.00 0.00 3.21
2726 4670 2.897969 ACTCGAACCCACTACTCACATT 59.102 45.455 0.00 0.00 0.00 2.71
2727 4671 3.323979 ACTCGAACCCACTACTCACATTT 59.676 43.478 0.00 0.00 0.00 2.32
2728 4672 4.525487 ACTCGAACCCACTACTCACATTTA 59.475 41.667 0.00 0.00 0.00 1.40
2729 4673 4.813027 TCGAACCCACTACTCACATTTAC 58.187 43.478 0.00 0.00 0.00 2.01
2730 4674 3.930848 CGAACCCACTACTCACATTTACC 59.069 47.826 0.00 0.00 0.00 2.85
2731 4675 3.994931 ACCCACTACTCACATTTACCC 57.005 47.619 0.00 0.00 0.00 3.69
2732 4676 2.574824 ACCCACTACTCACATTTACCCC 59.425 50.000 0.00 0.00 0.00 4.95
2733 4677 2.844348 CCCACTACTCACATTTACCCCT 59.156 50.000 0.00 0.00 0.00 4.79
2734 4678 4.035112 CCCACTACTCACATTTACCCCTA 58.965 47.826 0.00 0.00 0.00 3.53
2735 4679 4.472108 CCCACTACTCACATTTACCCCTAA 59.528 45.833 0.00 0.00 0.00 2.69
2736 4680 5.132144 CCCACTACTCACATTTACCCCTAAT 59.868 44.000 0.00 0.00 0.00 1.73
2737 4681 6.353602 CCCACTACTCACATTTACCCCTAATT 60.354 42.308 0.00 0.00 0.00 1.40
2738 4682 7.116736 CCACTACTCACATTTACCCCTAATTT 58.883 38.462 0.00 0.00 0.00 1.82
2739 4683 7.282450 CCACTACTCACATTTACCCCTAATTTC 59.718 40.741 0.00 0.00 0.00 2.17
2740 4684 7.011109 CACTACTCACATTTACCCCTAATTTCG 59.989 40.741 0.00 0.00 0.00 3.46
2741 4685 6.057321 ACTCACATTTACCCCTAATTTCGA 57.943 37.500 0.00 0.00 0.00 3.71
2742 4686 6.478129 ACTCACATTTACCCCTAATTTCGAA 58.522 36.000 0.00 0.00 0.00 3.71
2743 4687 6.598064 ACTCACATTTACCCCTAATTTCGAAG 59.402 38.462 0.00 0.00 0.00 3.79
2744 4688 6.478129 TCACATTTACCCCTAATTTCGAAGT 58.522 36.000 0.00 0.00 0.00 3.01
2745 4689 6.596497 TCACATTTACCCCTAATTTCGAAGTC 59.404 38.462 0.00 0.00 0.00 3.01
2746 4690 6.598064 CACATTTACCCCTAATTTCGAAGTCT 59.402 38.462 0.00 0.00 0.00 3.24
2747 4691 7.767198 CACATTTACCCCTAATTTCGAAGTCTA 59.233 37.037 0.00 0.00 0.00 2.59
2748 4692 7.767659 ACATTTACCCCTAATTTCGAAGTCTAC 59.232 37.037 0.00 0.00 0.00 2.59
2749 4693 7.486407 TTTACCCCTAATTTCGAAGTCTACT 57.514 36.000 0.00 0.00 0.00 2.57
2750 4694 5.595257 ACCCCTAATTTCGAAGTCTACTC 57.405 43.478 0.00 0.00 0.00 2.59
2751 4695 5.021458 ACCCCTAATTTCGAAGTCTACTCA 58.979 41.667 0.00 0.00 0.00 3.41
2752 4696 5.482878 ACCCCTAATTTCGAAGTCTACTCAA 59.517 40.000 0.00 0.00 0.00 3.02
2753 4697 6.013984 ACCCCTAATTTCGAAGTCTACTCAAA 60.014 38.462 0.00 0.00 0.00 2.69
2754 4698 7.048512 CCCCTAATTTCGAAGTCTACTCAAAT 58.951 38.462 0.00 0.00 0.00 2.32
2755 4699 7.553044 CCCCTAATTTCGAAGTCTACTCAAATT 59.447 37.037 0.00 10.09 0.00 1.82
2756 4700 8.947115 CCCTAATTTCGAAGTCTACTCAAATTT 58.053 33.333 0.00 0.00 0.00 1.82
2757 4701 9.760660 CCTAATTTCGAAGTCTACTCAAATTTG 57.239 33.333 12.15 12.15 0.00 2.32
2758 4702 9.267096 CTAATTTCGAAGTCTACTCAAATTTGC 57.733 33.333 13.54 0.00 0.00 3.68
2759 4703 5.607119 TTCGAAGTCTACTCAAATTTGCC 57.393 39.130 13.54 0.00 0.00 4.52
2760 4704 4.894784 TCGAAGTCTACTCAAATTTGCCT 58.105 39.130 13.54 3.24 0.00 4.75
2761 4705 4.929808 TCGAAGTCTACTCAAATTTGCCTC 59.070 41.667 13.54 0.00 0.00 4.70
2762 4706 4.932200 CGAAGTCTACTCAAATTTGCCTCT 59.068 41.667 13.54 3.45 0.00 3.69
2763 4707 5.062809 CGAAGTCTACTCAAATTTGCCTCTC 59.937 44.000 13.54 2.81 0.00 3.20
2764 4708 5.753721 AGTCTACTCAAATTTGCCTCTCT 57.246 39.130 13.54 4.88 0.00 3.10
2765 4709 5.486526 AGTCTACTCAAATTTGCCTCTCTG 58.513 41.667 13.54 0.65 0.00 3.35
2766 4710 5.012561 AGTCTACTCAAATTTGCCTCTCTGT 59.987 40.000 13.54 5.94 0.00 3.41
2767 4711 5.350091 GTCTACTCAAATTTGCCTCTCTGTC 59.650 44.000 13.54 0.00 0.00 3.51
2768 4712 3.070018 ACTCAAATTTGCCTCTCTGTCG 58.930 45.455 13.54 0.00 0.00 4.35
2769 4713 3.070018 CTCAAATTTGCCTCTCTGTCGT 58.930 45.455 13.54 0.00 0.00 4.34
2770 4714 3.476552 TCAAATTTGCCTCTCTGTCGTT 58.523 40.909 13.54 0.00 0.00 3.85
2771 4715 4.637276 TCAAATTTGCCTCTCTGTCGTTA 58.363 39.130 13.54 0.00 0.00 3.18
2772 4716 5.060506 TCAAATTTGCCTCTCTGTCGTTAA 58.939 37.500 13.54 0.00 0.00 2.01
2773 4717 5.179368 TCAAATTTGCCTCTCTGTCGTTAAG 59.821 40.000 13.54 0.00 0.00 1.85
2774 4718 3.746045 TTTGCCTCTCTGTCGTTAAGT 57.254 42.857 0.00 0.00 0.00 2.24
2775 4719 2.724977 TGCCTCTCTGTCGTTAAGTG 57.275 50.000 0.00 0.00 0.00 3.16
2776 4720 2.235891 TGCCTCTCTGTCGTTAAGTGA 58.764 47.619 0.00 0.00 0.00 3.41
2777 4721 2.030185 TGCCTCTCTGTCGTTAAGTGAC 60.030 50.000 1.65 1.65 36.88 3.67
2778 4722 2.671632 GCCTCTCTGTCGTTAAGTGACC 60.672 54.545 5.56 0.00 35.46 4.02
2779 4723 2.820787 CCTCTCTGTCGTTAAGTGACCT 59.179 50.000 5.56 0.00 35.46 3.85
2780 4724 3.256136 CCTCTCTGTCGTTAAGTGACCTT 59.744 47.826 5.56 0.00 35.46 3.50
2781 4725 4.458295 CCTCTCTGTCGTTAAGTGACCTTA 59.542 45.833 5.56 0.00 35.46 2.69
2782 4726 5.125739 CCTCTCTGTCGTTAAGTGACCTTAT 59.874 44.000 5.56 0.00 35.46 1.73
2783 4727 6.318144 CCTCTCTGTCGTTAAGTGACCTTATA 59.682 42.308 5.56 0.00 35.46 0.98
2784 4728 7.148120 CCTCTCTGTCGTTAAGTGACCTTATAA 60.148 40.741 5.56 0.00 35.46 0.98
2785 4729 8.114331 TCTCTGTCGTTAAGTGACCTTATAAA 57.886 34.615 5.56 0.00 35.46 1.40
2786 4730 8.579006 TCTCTGTCGTTAAGTGACCTTATAAAA 58.421 33.333 5.56 0.00 35.46 1.52
2787 4731 9.199982 CTCTGTCGTTAAGTGACCTTATAAAAA 57.800 33.333 5.56 0.00 35.46 1.94
2788 4732 9.715121 TCTGTCGTTAAGTGACCTTATAAAAAT 57.285 29.630 5.56 0.00 35.46 1.82
2789 4733 9.755064 CTGTCGTTAAGTGACCTTATAAAAATG 57.245 33.333 5.56 0.00 35.46 2.32
2790 4734 8.231837 TGTCGTTAAGTGACCTTATAAAAATGC 58.768 33.333 5.56 0.00 35.46 3.56
2791 4735 7.695201 GTCGTTAAGTGACCTTATAAAAATGCC 59.305 37.037 0.00 0.00 33.27 4.40
2792 4736 6.970613 CGTTAAGTGACCTTATAAAAATGCCC 59.029 38.462 0.00 0.00 33.27 5.36
2793 4737 7.148137 CGTTAAGTGACCTTATAAAAATGCCCT 60.148 37.037 0.00 0.00 33.27 5.19
2794 4738 8.528643 GTTAAGTGACCTTATAAAAATGCCCTT 58.471 33.333 0.00 0.00 33.27 3.95
2795 4739 6.775594 AGTGACCTTATAAAAATGCCCTTC 57.224 37.500 0.00 0.00 0.00 3.46
2796 4740 5.656859 AGTGACCTTATAAAAATGCCCTTCC 59.343 40.000 0.00 0.00 0.00 3.46
2797 4741 4.642885 TGACCTTATAAAAATGCCCTTCCG 59.357 41.667 0.00 0.00 0.00 4.30
2798 4742 4.606210 ACCTTATAAAAATGCCCTTCCGT 58.394 39.130 0.00 0.00 0.00 4.69
2799 4743 5.020795 ACCTTATAAAAATGCCCTTCCGTT 58.979 37.500 0.00 0.00 0.00 4.44
2800 4744 5.482526 ACCTTATAAAAATGCCCTTCCGTTT 59.517 36.000 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.752743 TAATCATGCAGGCAGCCCAC 60.753 55.000 8.22 0.05 44.83 4.61
45 46 0.466739 CTAATCATGCAGGCAGCCCA 60.467 55.000 8.22 0.00 44.83 5.36
46 47 1.803366 GCTAATCATGCAGGCAGCCC 61.803 60.000 8.22 0.00 44.83 5.19
47 48 0.822532 AGCTAATCATGCAGGCAGCC 60.823 55.000 1.84 1.84 44.83 4.85
146 158 2.138320 CGATACAAGCTACCAGCCATG 58.862 52.381 0.00 0.00 43.77 3.66
147 159 1.762957 ACGATACAAGCTACCAGCCAT 59.237 47.619 0.00 0.00 43.77 4.40
148 160 1.191535 ACGATACAAGCTACCAGCCA 58.808 50.000 0.00 0.00 43.77 4.75
149 161 3.005472 TGATACGATACAAGCTACCAGCC 59.995 47.826 0.00 0.00 43.77 4.85
150 162 3.982058 GTGATACGATACAAGCTACCAGC 59.018 47.826 0.00 0.00 42.84 4.85
151 163 5.183014 TGTGATACGATACAAGCTACCAG 57.817 43.478 0.00 0.00 0.00 4.00
152 164 5.784578 ATGTGATACGATACAAGCTACCA 57.215 39.130 0.00 0.00 0.00 3.25
153 165 6.910995 AGTATGTGATACGATACAAGCTACC 58.089 40.000 0.00 0.00 40.64 3.18
154 166 8.719648 ACTAGTATGTGATACGATACAAGCTAC 58.280 37.037 0.00 0.00 40.64 3.58
183 201 6.313658 TGTGCTCTGCATGTTAATTACTAGTG 59.686 38.462 5.39 0.00 41.91 2.74
253 271 4.379143 GGACGTTGTTTCGCGGGC 62.379 66.667 6.13 0.00 0.00 6.13
257 275 0.653636 TTGACTGGACGTTGTTTCGC 59.346 50.000 0.00 0.00 0.00 4.70
332 404 0.598680 CTGGCAGCTACTGATACCGC 60.599 60.000 0.00 0.00 32.44 5.68
367 442 4.273724 TGATCGTTGTACAGAGCTAGCTAG 59.726 45.833 19.38 16.84 0.00 3.42
368 443 4.035324 GTGATCGTTGTACAGAGCTAGCTA 59.965 45.833 19.38 0.00 0.00 3.32
382 457 3.544048 GGCGTATGTGATTGTGATCGTTG 60.544 47.826 0.00 0.00 34.91 4.10
422 501 7.116662 TGCTACGACACAAACGTATAGAAATTT 59.883 33.333 0.00 0.00 43.45 1.82
423 502 6.587226 TGCTACGACACAAACGTATAGAAATT 59.413 34.615 0.00 0.00 43.45 1.82
428 507 4.262277 CAGTGCTACGACACAAACGTATAG 59.738 45.833 9.84 0.00 43.45 1.31
434 513 0.234884 GGCAGTGCTACGACACAAAC 59.765 55.000 16.11 0.00 43.23 2.93
442 521 1.850441 GTACGTAATGGCAGTGCTACG 59.150 52.381 25.21 25.21 42.12 3.51
444 523 3.880047 AAGTACGTAATGGCAGTGCTA 57.120 42.857 16.11 9.92 30.91 3.49
446 525 4.932268 TTTAAGTACGTAATGGCAGTGC 57.068 40.909 6.55 6.55 0.00 4.40
447 526 8.234546 AGAAATTTTAAGTACGTAATGGCAGTG 58.765 33.333 0.00 0.00 0.00 3.66
461 540 9.801714 CGACACAAACGTATAGAAATTTTAAGT 57.198 29.630 0.00 0.00 0.00 2.24
462 541 9.801714 ACGACACAAACGTATAGAAATTTTAAG 57.198 29.630 0.00 0.00 42.17 1.85
465 544 7.953710 GCTACGACACAAACGTATAGAAATTTT 59.046 33.333 0.00 0.00 43.45 1.82
466 545 7.116662 TGCTACGACACAAACGTATAGAAATTT 59.883 33.333 0.00 0.00 43.45 1.82
467 546 6.587226 TGCTACGACACAAACGTATAGAAATT 59.413 34.615 0.00 0.00 43.45 1.82
468 547 6.034256 GTGCTACGACACAAACGTATAGAAAT 59.966 38.462 0.00 0.00 43.45 2.17
469 548 5.343058 GTGCTACGACACAAACGTATAGAAA 59.657 40.000 0.00 0.00 43.45 2.52
470 549 4.853196 GTGCTACGACACAAACGTATAGAA 59.147 41.667 0.00 0.00 43.45 2.10
471 550 4.154737 AGTGCTACGACACAAACGTATAGA 59.845 41.667 9.84 0.00 43.45 1.98
472 551 4.409570 AGTGCTACGACACAAACGTATAG 58.590 43.478 9.84 0.00 43.45 1.31
473 552 4.424061 AGTGCTACGACACAAACGTATA 57.576 40.909 9.84 0.00 43.45 1.47
474 553 3.293311 AGTGCTACGACACAAACGTAT 57.707 42.857 9.84 0.00 43.45 3.06
475 554 2.780065 AGTGCTACGACACAAACGTA 57.220 45.000 9.84 0.00 43.23 3.57
476 555 2.033801 ACTAGTGCTACGACACAAACGT 59.966 45.455 0.00 0.00 43.23 3.99
477 556 2.658285 ACTAGTGCTACGACACAAACG 58.342 47.619 0.00 0.00 43.23 3.60
478 557 6.701432 ATAAACTAGTGCTACGACACAAAC 57.299 37.500 0.00 0.00 43.23 2.93
479 558 7.369607 TGTATAAACTAGTGCTACGACACAAA 58.630 34.615 0.00 0.00 43.23 2.83
480 559 6.912082 TGTATAAACTAGTGCTACGACACAA 58.088 36.000 0.00 0.00 43.23 3.33
481 560 6.499234 TGTATAAACTAGTGCTACGACACA 57.501 37.500 0.00 0.00 43.23 3.72
482 561 7.801547 TTTGTATAAACTAGTGCTACGACAC 57.198 36.000 0.00 0.00 41.02 3.67
483 562 9.507280 GTATTTGTATAAACTAGTGCTACGACA 57.493 33.333 0.00 0.00 0.00 4.35
484 563 8.676761 CGTATTTGTATAAACTAGTGCTACGAC 58.323 37.037 0.00 0.00 0.00 4.34
485 564 8.397906 ACGTATTTGTATAAACTAGTGCTACGA 58.602 33.333 14.71 0.00 0.00 3.43
486 565 8.466799 CACGTATTTGTATAAACTAGTGCTACG 58.533 37.037 0.00 9.19 0.00 3.51
487 566 9.507280 TCACGTATTTGTATAAACTAGTGCTAC 57.493 33.333 0.00 0.00 31.95 3.58
488 567 9.507280 GTCACGTATTTGTATAAACTAGTGCTA 57.493 33.333 0.00 0.00 31.95 3.49
489 568 8.030692 TGTCACGTATTTGTATAAACTAGTGCT 58.969 33.333 0.00 0.00 31.95 4.40
490 569 8.176814 TGTCACGTATTTGTATAAACTAGTGC 57.823 34.615 0.00 6.73 31.95 4.40
518 597 9.031537 TCCTTGTTCAATAGTAGTAGATGTGAA 57.968 33.333 0.00 0.00 0.00 3.18
576 662 9.388346 CGATCTCAGTATGTCTAGTTATTTGTC 57.612 37.037 0.00 0.00 37.40 3.18
577 663 9.121658 TCGATCTCAGTATGTCTAGTTATTTGT 57.878 33.333 0.00 0.00 37.40 2.83
580 666 8.735315 CCATCGATCTCAGTATGTCTAGTTATT 58.265 37.037 0.00 0.00 37.40 1.40
581 667 7.148154 GCCATCGATCTCAGTATGTCTAGTTAT 60.148 40.741 0.00 0.00 37.40 1.89
582 668 6.149640 GCCATCGATCTCAGTATGTCTAGTTA 59.850 42.308 0.00 0.00 37.40 2.24
583 669 5.048364 GCCATCGATCTCAGTATGTCTAGTT 60.048 44.000 0.00 0.00 37.40 2.24
584 670 4.457603 GCCATCGATCTCAGTATGTCTAGT 59.542 45.833 0.00 0.00 37.40 2.57
585 671 4.457257 TGCCATCGATCTCAGTATGTCTAG 59.543 45.833 0.00 0.00 37.40 2.43
586 672 4.398319 TGCCATCGATCTCAGTATGTCTA 58.602 43.478 0.00 0.00 37.40 2.59
587 673 3.225940 TGCCATCGATCTCAGTATGTCT 58.774 45.455 0.00 0.00 37.40 3.41
588 674 3.650070 TGCCATCGATCTCAGTATGTC 57.350 47.619 0.00 0.00 37.40 3.06
589 675 4.613925 AATGCCATCGATCTCAGTATGT 57.386 40.909 0.00 0.00 37.40 2.29
590 676 6.255237 GTGATAATGCCATCGATCTCAGTATG 59.745 42.308 16.34 0.00 37.54 2.39
591 677 6.071165 TGTGATAATGCCATCGATCTCAGTAT 60.071 38.462 13.11 13.11 0.00 2.12
592 678 5.243730 TGTGATAATGCCATCGATCTCAGTA 59.756 40.000 0.00 0.34 0.00 2.74
593 679 4.039609 TGTGATAATGCCATCGATCTCAGT 59.960 41.667 0.00 0.00 0.00 3.41
594 680 4.563061 TGTGATAATGCCATCGATCTCAG 58.437 43.478 0.00 0.00 0.00 3.35
669 755 3.491652 GAAAGCTCGTGAGGCGCC 61.492 66.667 21.89 21.89 41.07 6.53
710 797 3.486383 TCCCTCACCACTGAAATTGTTC 58.514 45.455 0.00 0.00 0.00 3.18
833 926 2.971901 AAGGCGGGGAATTTATAGGG 57.028 50.000 0.00 0.00 0.00 3.53
885 979 4.771054 GGTACAGTTTTGGTAGAGGAGAGA 59.229 45.833 0.00 0.00 0.00 3.10
888 982 3.846360 CGGTACAGTTTTGGTAGAGGAG 58.154 50.000 0.00 0.00 0.00 3.69
889 983 2.028748 GCGGTACAGTTTTGGTAGAGGA 60.029 50.000 0.00 0.00 0.00 3.71
890 984 2.344025 GCGGTACAGTTTTGGTAGAGG 58.656 52.381 0.00 0.00 0.00 3.69
910 1004 2.025887 AGGGAAGGCAGTACAATTCTGG 60.026 50.000 0.00 0.00 33.98 3.86
931 1025 2.106938 GCGATCACCGATCAGCCA 59.893 61.111 4.95 0.00 38.84 4.75
956 1050 3.007398 AGGTGCAAGTAGAAGGTCAGAAG 59.993 47.826 0.00 0.00 0.00 2.85
1205 1302 1.111277 AATAATGTCTTTGGGCGGGC 58.889 50.000 0.00 0.00 0.00 6.13
1206 1303 5.529581 AATTAATAATGTCTTTGGGCGGG 57.470 39.130 0.00 0.00 0.00 6.13
1207 1304 7.272037 ACTAATTAATAATGTCTTTGGGCGG 57.728 36.000 0.00 0.00 0.00 6.13
1214 1311 9.988350 CGTGCAAGAACTAATTAATAATGTCTT 57.012 29.630 0.00 0.00 0.00 3.01
1215 1312 8.122952 GCGTGCAAGAACTAATTAATAATGTCT 58.877 33.333 2.99 0.00 0.00 3.41
1216 1313 7.908082 TGCGTGCAAGAACTAATTAATAATGTC 59.092 33.333 2.99 0.00 0.00 3.06
1217 1314 7.757526 TGCGTGCAAGAACTAATTAATAATGT 58.242 30.769 2.99 0.00 0.00 2.71
1218 1315 8.684655 CATGCGTGCAAGAACTAATTAATAATG 58.315 33.333 2.99 0.00 0.00 1.90
1219 1316 8.405531 ACATGCGTGCAAGAACTAATTAATAAT 58.594 29.630 5.64 0.00 0.00 1.28
1220 1317 7.757526 ACATGCGTGCAAGAACTAATTAATAA 58.242 30.769 5.64 0.00 0.00 1.40
1221 1318 7.315247 ACATGCGTGCAAGAACTAATTAATA 57.685 32.000 5.64 0.00 0.00 0.98
1222 1319 6.194796 ACATGCGTGCAAGAACTAATTAAT 57.805 33.333 5.64 0.00 0.00 1.40
1223 1320 5.391523 GGACATGCGTGCAAGAACTAATTAA 60.392 40.000 5.64 0.00 32.83 1.40
1224 1321 4.094294 GGACATGCGTGCAAGAACTAATTA 59.906 41.667 5.64 0.00 32.83 1.40
1225 1322 3.119849 GGACATGCGTGCAAGAACTAATT 60.120 43.478 5.64 0.00 32.83 1.40
1226 1323 2.420022 GGACATGCGTGCAAGAACTAAT 59.580 45.455 5.64 0.00 32.83 1.73
1227 1324 1.804151 GGACATGCGTGCAAGAACTAA 59.196 47.619 5.64 0.00 32.83 2.24
1228 1325 1.001974 AGGACATGCGTGCAAGAACTA 59.998 47.619 5.64 0.00 35.57 2.24
1229 1326 0.250467 AGGACATGCGTGCAAGAACT 60.250 50.000 5.64 0.00 35.57 3.01
1230 1327 0.166814 GAGGACATGCGTGCAAGAAC 59.833 55.000 5.64 0.00 35.57 3.01
1243 1340 9.599866 CATACTGTAGTAATTTTCATGAGGACA 57.400 33.333 0.00 0.00 33.76 4.02
1246 1343 8.768955 GCTCATACTGTAGTAATTTTCATGAGG 58.231 37.037 15.21 4.02 32.54 3.86
1247 1344 9.539825 AGCTCATACTGTAGTAATTTTCATGAG 57.460 33.333 11.57 11.57 33.88 2.90
1255 1352 8.919145 AGAAGCTTAGCTCATACTGTAGTAATT 58.081 33.333 7.36 0.00 38.25 1.40
1256 1353 8.472007 AGAAGCTTAGCTCATACTGTAGTAAT 57.528 34.615 7.36 0.00 38.25 1.89
1257 1354 7.556635 TGAGAAGCTTAGCTCATACTGTAGTAA 59.443 37.037 7.36 0.00 38.25 2.24
1258 1355 7.054751 TGAGAAGCTTAGCTCATACTGTAGTA 58.945 38.462 7.36 0.00 38.25 1.82
1259 1356 5.888724 TGAGAAGCTTAGCTCATACTGTAGT 59.111 40.000 7.36 0.00 38.25 2.73
1260 1357 6.384258 TGAGAAGCTTAGCTCATACTGTAG 57.616 41.667 7.36 0.00 38.25 2.74
1261 1358 6.378564 AGTTGAGAAGCTTAGCTCATACTGTA 59.621 38.462 16.20 1.03 40.51 2.74
1262 1359 5.186797 AGTTGAGAAGCTTAGCTCATACTGT 59.813 40.000 16.20 0.00 40.51 3.55
1265 1362 8.655651 AATTAGTTGAGAAGCTTAGCTCATAC 57.344 34.615 16.20 15.58 40.51 2.39
1266 1363 9.319143 GAAATTAGTTGAGAAGCTTAGCTCATA 57.681 33.333 16.20 6.55 40.51 2.15
1267 1364 7.010923 CGAAATTAGTTGAGAAGCTTAGCTCAT 59.989 37.037 16.20 7.37 40.51 2.90
1268 1365 6.311445 CGAAATTAGTTGAGAAGCTTAGCTCA 59.689 38.462 7.36 12.55 38.25 4.26
1271 1368 5.351740 ACCGAAATTAGTTGAGAAGCTTAGC 59.648 40.000 0.00 0.00 0.00 3.09
1272 1369 6.036191 GGACCGAAATTAGTTGAGAAGCTTAG 59.964 42.308 0.00 0.00 0.00 2.18
1274 1371 4.695928 GGACCGAAATTAGTTGAGAAGCTT 59.304 41.667 0.00 0.00 0.00 3.74
1275 1372 4.254492 GGACCGAAATTAGTTGAGAAGCT 58.746 43.478 0.00 0.00 0.00 3.74
1276 1373 3.062234 CGGACCGAAATTAGTTGAGAAGC 59.938 47.826 8.64 0.00 0.00 3.86
1278 1375 2.997986 GCGGACCGAAATTAGTTGAGAA 59.002 45.455 20.50 0.00 0.00 2.87
1279 1376 2.232941 AGCGGACCGAAATTAGTTGAGA 59.767 45.455 20.50 0.00 0.00 3.27
1280 1377 2.618053 AGCGGACCGAAATTAGTTGAG 58.382 47.619 20.50 0.00 0.00 3.02
1282 1379 3.723835 CGAAAGCGGACCGAAATTAGTTG 60.724 47.826 20.50 0.00 0.00 3.16
1283 1380 2.414138 CGAAAGCGGACCGAAATTAGTT 59.586 45.455 20.50 0.00 0.00 2.24
1284 1381 1.997606 CGAAAGCGGACCGAAATTAGT 59.002 47.619 20.50 0.00 0.00 2.24
1285 1382 2.713927 CGAAAGCGGACCGAAATTAG 57.286 50.000 20.50 5.32 0.00 1.73
1299 1396 0.318107 CTGCAGCAACCAACCGAAAG 60.318 55.000 0.00 0.00 0.00 2.62
1341 1438 2.307934 GCCTCTGGCTGAAGAAGTAG 57.692 55.000 0.73 0.00 46.69 2.57
1554 1651 1.133513 TCATTGGCACCCTTGTTCTGT 60.134 47.619 0.00 0.00 0.00 3.41
1704 1801 1.875813 GTCCGTGATGCAGCTCGAG 60.876 63.158 26.02 16.18 0.00 4.04
1714 1811 1.374252 GACAAGCGTGGTCCGTGAT 60.374 57.895 4.26 0.00 39.32 3.06
1726 1823 2.029844 GGTCTGGAGCGTGACAAGC 61.030 63.158 5.10 5.10 35.11 4.01
1791 1888 4.921834 GCTGGAGCTTAGCGTCTT 57.078 55.556 7.98 0.00 38.21 3.01
1914 2030 6.256053 ACTTCAACCCAATTCTCATGGTTAT 58.744 36.000 0.00 0.00 39.01 1.89
1938 2054 5.832539 ATGGAGGTTTCTTCTCTTCAAGA 57.167 39.130 0.00 0.00 0.00 3.02
1939 2055 7.986085 TTAATGGAGGTTTCTTCTCTTCAAG 57.014 36.000 0.00 0.00 0.00 3.02
1940 2056 7.040409 GCTTTAATGGAGGTTTCTTCTCTTCAA 60.040 37.037 0.00 0.00 0.00 2.69
1941 2057 6.431234 GCTTTAATGGAGGTTTCTTCTCTTCA 59.569 38.462 0.00 0.00 0.00 3.02
1942 2058 6.431234 TGCTTTAATGGAGGTTTCTTCTCTTC 59.569 38.462 0.00 0.00 0.00 2.87
1943 2059 6.306987 TGCTTTAATGGAGGTTTCTTCTCTT 58.693 36.000 0.00 0.00 0.00 2.85
1944 2060 5.880901 TGCTTTAATGGAGGTTTCTTCTCT 58.119 37.500 0.00 0.00 0.00 3.10
1945 2061 5.392487 GCTGCTTTAATGGAGGTTTCTTCTC 60.392 44.000 11.10 0.00 0.00 2.87
1954 2070 0.379669 CGCAGCTGCTTTAATGGAGG 59.620 55.000 34.22 12.51 39.32 4.30
1982 2098 3.134458 AGACTTGCAAGTTACAGCTGAC 58.866 45.455 31.58 15.99 39.88 3.51
2013 2129 1.201855 CGCTTTCGTTGATGAGTGAGC 60.202 52.381 0.00 0.00 0.00 4.26
2014 2130 2.328473 TCGCTTTCGTTGATGAGTGAG 58.672 47.619 0.00 0.00 36.96 3.51
2015 2131 2.432206 TCGCTTTCGTTGATGAGTGA 57.568 45.000 0.00 0.00 36.96 3.41
2016 2132 2.220824 TGTTCGCTTTCGTTGATGAGTG 59.779 45.455 0.00 0.00 36.96 3.51
2032 2148 4.788521 GCGGGCTTAATTAATCCTTGTTCG 60.789 45.833 15.78 11.80 0.00 3.95
2036 2152 3.004734 CCTGCGGGCTTAATTAATCCTTG 59.995 47.826 15.78 10.77 0.00 3.61
2037 2153 3.117663 TCCTGCGGGCTTAATTAATCCTT 60.118 43.478 15.78 0.00 0.00 3.36
2081 2198 4.099170 GAGTTGCAGCTGCGGCAG 62.099 66.667 32.11 25.21 45.83 4.85
2297 2418 3.459965 CGCTCTGCCTCTGCCTCT 61.460 66.667 0.00 0.00 36.33 3.69
2298 2419 3.456365 TCGCTCTGCCTCTGCCTC 61.456 66.667 0.00 0.00 36.33 4.70
2299 2420 3.768922 GTCGCTCTGCCTCTGCCT 61.769 66.667 0.00 0.00 36.33 4.75
2300 2421 4.828925 GGTCGCTCTGCCTCTGCC 62.829 72.222 0.00 0.00 36.33 4.85
2302 2423 4.504916 CCGGTCGCTCTGCCTCTG 62.505 72.222 0.00 0.00 0.00 3.35
2516 4460 1.515521 GGCCACAAGACCAAACTCCG 61.516 60.000 0.00 0.00 0.00 4.63
2541 4485 2.887152 CAGAAAAAGGGGGACAACTCAG 59.113 50.000 0.00 0.00 0.00 3.35
2572 4516 7.223058 GAAGTATTCCTGAATTGTGTACTCG 57.777 40.000 0.00 0.00 39.83 4.18
2623 4567 7.409767 GCAATCAAACGCTTCACTAGATTTTTC 60.410 37.037 0.00 0.00 0.00 2.29
2629 4573 3.398406 TGCAATCAAACGCTTCACTAGA 58.602 40.909 0.00 0.00 0.00 2.43
2633 4577 1.387756 GCATGCAATCAAACGCTTCAC 59.612 47.619 14.21 0.00 0.00 3.18
2637 4581 2.164017 TGTATGCATGCAATCAAACGCT 59.836 40.909 26.68 7.21 0.00 5.07
2645 4589 5.497635 TGATTACGTTGTATGCATGCAAT 57.502 34.783 29.06 18.49 34.97 3.56
2650 4594 7.552458 TCATCTTTGATTACGTTGTATGCAT 57.448 32.000 3.79 3.79 0.00 3.96
2658 4602 9.774742 GCTATCTTTTTCATCTTTGATTACGTT 57.225 29.630 0.00 0.00 0.00 3.99
2659 4603 8.398665 GGCTATCTTTTTCATCTTTGATTACGT 58.601 33.333 0.00 0.00 0.00 3.57
2660 4604 8.616076 AGGCTATCTTTTTCATCTTTGATTACG 58.384 33.333 0.00 0.00 0.00 3.18
2676 4620 7.451566 AGGACACAAATGTAAAAGGCTATCTTT 59.548 33.333 0.00 0.00 42.57 2.52
2677 4621 6.948309 AGGACACAAATGTAAAAGGCTATCTT 59.052 34.615 0.00 0.00 39.95 2.40
2678 4622 6.485171 AGGACACAAATGTAAAAGGCTATCT 58.515 36.000 0.00 0.00 39.95 1.98
2679 4623 6.759497 AGGACACAAATGTAAAAGGCTATC 57.241 37.500 0.00 0.00 39.95 2.08
2680 4624 8.520351 GTTAAGGACACAAATGTAAAAGGCTAT 58.480 33.333 0.00 0.00 39.95 2.97
2681 4625 7.722285 AGTTAAGGACACAAATGTAAAAGGCTA 59.278 33.333 0.00 0.00 39.95 3.93
2682 4626 6.549736 AGTTAAGGACACAAATGTAAAAGGCT 59.450 34.615 0.00 0.00 39.95 4.58
2683 4627 6.745116 AGTTAAGGACACAAATGTAAAAGGC 58.255 36.000 0.00 0.00 39.95 4.35
2684 4628 7.041644 TCGAGTTAAGGACACAAATGTAAAAGG 60.042 37.037 0.00 0.00 39.95 3.11
2685 4629 7.857569 TCGAGTTAAGGACACAAATGTAAAAG 58.142 34.615 0.00 0.00 39.95 2.27
2686 4630 7.789273 TCGAGTTAAGGACACAAATGTAAAA 57.211 32.000 0.00 0.00 39.95 1.52
2687 4631 7.254863 GGTTCGAGTTAAGGACACAAATGTAAA 60.255 37.037 0.00 0.00 39.95 2.01
2688 4632 6.203338 GGTTCGAGTTAAGGACACAAATGTAA 59.797 38.462 0.00 0.00 39.95 2.41
2689 4633 5.697633 GGTTCGAGTTAAGGACACAAATGTA 59.302 40.000 0.00 0.00 39.95 2.29
2690 4634 4.514066 GGTTCGAGTTAAGGACACAAATGT 59.486 41.667 0.00 0.00 43.71 2.71
2691 4635 4.083484 GGGTTCGAGTTAAGGACACAAATG 60.083 45.833 0.00 0.00 0.00 2.32
2692 4636 4.070009 GGGTTCGAGTTAAGGACACAAAT 58.930 43.478 0.00 0.00 0.00 2.32
2693 4637 3.118334 TGGGTTCGAGTTAAGGACACAAA 60.118 43.478 0.00 0.00 0.00 2.83
2694 4638 2.435069 TGGGTTCGAGTTAAGGACACAA 59.565 45.455 0.00 0.00 0.00 3.33
2695 4639 2.040939 TGGGTTCGAGTTAAGGACACA 58.959 47.619 0.00 0.00 0.00 3.72
2696 4640 2.036862 AGTGGGTTCGAGTTAAGGACAC 59.963 50.000 0.00 0.00 0.00 3.67
2697 4641 2.322658 AGTGGGTTCGAGTTAAGGACA 58.677 47.619 0.00 0.00 0.00 4.02
2698 4642 3.509184 AGTAGTGGGTTCGAGTTAAGGAC 59.491 47.826 0.00 0.00 0.00 3.85
2699 4643 3.760684 GAGTAGTGGGTTCGAGTTAAGGA 59.239 47.826 0.00 0.00 0.00 3.36
2700 4644 3.508793 TGAGTAGTGGGTTCGAGTTAAGG 59.491 47.826 0.00 0.00 0.00 2.69
2701 4645 4.022589 TGTGAGTAGTGGGTTCGAGTTAAG 60.023 45.833 0.00 0.00 0.00 1.85
2702 4646 3.890756 TGTGAGTAGTGGGTTCGAGTTAA 59.109 43.478 0.00 0.00 0.00 2.01
2703 4647 3.489355 TGTGAGTAGTGGGTTCGAGTTA 58.511 45.455 0.00 0.00 0.00 2.24
2704 4648 2.313317 TGTGAGTAGTGGGTTCGAGTT 58.687 47.619 0.00 0.00 0.00 3.01
2705 4649 1.991121 TGTGAGTAGTGGGTTCGAGT 58.009 50.000 0.00 0.00 0.00 4.18
2706 4650 3.594603 AATGTGAGTAGTGGGTTCGAG 57.405 47.619 0.00 0.00 0.00 4.04
2707 4651 4.322198 GGTAAATGTGAGTAGTGGGTTCGA 60.322 45.833 0.00 0.00 0.00 3.71
2708 4652 3.930848 GGTAAATGTGAGTAGTGGGTTCG 59.069 47.826 0.00 0.00 0.00 3.95
2709 4653 4.259356 GGGTAAATGTGAGTAGTGGGTTC 58.741 47.826 0.00 0.00 0.00 3.62
2710 4654 3.009805 GGGGTAAATGTGAGTAGTGGGTT 59.990 47.826 0.00 0.00 0.00 4.11
2711 4655 2.574824 GGGGTAAATGTGAGTAGTGGGT 59.425 50.000 0.00 0.00 0.00 4.51
2712 4656 2.844348 AGGGGTAAATGTGAGTAGTGGG 59.156 50.000 0.00 0.00 0.00 4.61
2713 4657 5.687166 TTAGGGGTAAATGTGAGTAGTGG 57.313 43.478 0.00 0.00 0.00 4.00
2714 4658 7.011109 CGAAATTAGGGGTAAATGTGAGTAGTG 59.989 40.741 0.00 0.00 0.00 2.74
2715 4659 7.046033 CGAAATTAGGGGTAAATGTGAGTAGT 58.954 38.462 0.00 0.00 0.00 2.73
2716 4660 7.270047 TCGAAATTAGGGGTAAATGTGAGTAG 58.730 38.462 0.00 0.00 0.00 2.57
2717 4661 7.185318 TCGAAATTAGGGGTAAATGTGAGTA 57.815 36.000 0.00 0.00 0.00 2.59
2718 4662 6.057321 TCGAAATTAGGGGTAAATGTGAGT 57.943 37.500 0.00 0.00 0.00 3.41
2719 4663 6.598064 ACTTCGAAATTAGGGGTAAATGTGAG 59.402 38.462 0.00 0.00 0.00 3.51
2720 4664 6.478129 ACTTCGAAATTAGGGGTAAATGTGA 58.522 36.000 0.00 0.00 0.00 3.58
2721 4665 6.598064 AGACTTCGAAATTAGGGGTAAATGTG 59.402 38.462 0.00 0.00 0.00 3.21
2722 4666 6.718294 AGACTTCGAAATTAGGGGTAAATGT 58.282 36.000 0.00 0.00 0.00 2.71
2723 4667 7.985752 AGTAGACTTCGAAATTAGGGGTAAATG 59.014 37.037 0.00 0.00 0.00 2.32
2724 4668 8.087303 AGTAGACTTCGAAATTAGGGGTAAAT 57.913 34.615 0.00 0.00 0.00 1.40
2725 4669 7.178983 TGAGTAGACTTCGAAATTAGGGGTAAA 59.821 37.037 0.00 0.00 0.00 2.01
2726 4670 6.664816 TGAGTAGACTTCGAAATTAGGGGTAA 59.335 38.462 0.00 0.00 0.00 2.85
2727 4671 6.189859 TGAGTAGACTTCGAAATTAGGGGTA 58.810 40.000 0.00 0.00 0.00 3.69
2728 4672 5.021458 TGAGTAGACTTCGAAATTAGGGGT 58.979 41.667 0.00 0.00 0.00 4.95
2729 4673 5.593679 TGAGTAGACTTCGAAATTAGGGG 57.406 43.478 0.00 0.00 0.00 4.79
2730 4674 8.494016 AATTTGAGTAGACTTCGAAATTAGGG 57.506 34.615 0.00 0.00 0.00 3.53
2731 4675 9.760660 CAAATTTGAGTAGACTTCGAAATTAGG 57.239 33.333 13.08 0.00 0.00 2.69
2732 4676 9.267096 GCAAATTTGAGTAGACTTCGAAATTAG 57.733 33.333 22.31 0.00 0.00 1.73
2733 4677 8.234546 GGCAAATTTGAGTAGACTTCGAAATTA 58.765 33.333 22.31 0.00 0.00 1.40
2734 4678 7.040409 AGGCAAATTTGAGTAGACTTCGAAATT 60.040 33.333 22.31 0.00 0.00 1.82
2735 4679 6.431234 AGGCAAATTTGAGTAGACTTCGAAAT 59.569 34.615 22.31 0.00 0.00 2.17
2736 4680 5.763204 AGGCAAATTTGAGTAGACTTCGAAA 59.237 36.000 22.31 0.00 0.00 3.46
2737 4681 5.305585 AGGCAAATTTGAGTAGACTTCGAA 58.694 37.500 22.31 0.00 0.00 3.71
2738 4682 4.894784 AGGCAAATTTGAGTAGACTTCGA 58.105 39.130 22.31 0.00 0.00 3.71
2739 4683 4.932200 AGAGGCAAATTTGAGTAGACTTCG 59.068 41.667 22.31 0.00 0.00 3.79
2740 4684 6.091986 CAGAGAGGCAAATTTGAGTAGACTTC 59.908 42.308 22.31 8.52 0.00 3.01
2741 4685 5.936956 CAGAGAGGCAAATTTGAGTAGACTT 59.063 40.000 22.31 0.00 0.00 3.01
2742 4686 5.012561 ACAGAGAGGCAAATTTGAGTAGACT 59.987 40.000 22.31 10.54 0.00 3.24
2743 4687 5.241662 ACAGAGAGGCAAATTTGAGTAGAC 58.758 41.667 22.31 7.76 0.00 2.59
2744 4688 5.482908 GACAGAGAGGCAAATTTGAGTAGA 58.517 41.667 22.31 0.00 0.00 2.59
2745 4689 4.328440 CGACAGAGAGGCAAATTTGAGTAG 59.672 45.833 22.31 6.60 0.00 2.57
2746 4690 4.245660 CGACAGAGAGGCAAATTTGAGTA 58.754 43.478 22.31 0.00 0.00 2.59
2747 4691 3.070018 CGACAGAGAGGCAAATTTGAGT 58.930 45.455 22.31 7.38 0.00 3.41
2748 4692 3.070018 ACGACAGAGAGGCAAATTTGAG 58.930 45.455 22.31 0.00 0.00 3.02
2749 4693 3.126001 ACGACAGAGAGGCAAATTTGA 57.874 42.857 22.31 0.00 0.00 2.69
2750 4694 3.904136 AACGACAGAGAGGCAAATTTG 57.096 42.857 14.03 14.03 0.00 2.32
2751 4695 5.049405 CACTTAACGACAGAGAGGCAAATTT 60.049 40.000 0.00 0.00 0.00 1.82
2752 4696 4.452455 CACTTAACGACAGAGAGGCAAATT 59.548 41.667 0.00 0.00 0.00 1.82
2753 4697 3.997021 CACTTAACGACAGAGAGGCAAAT 59.003 43.478 0.00 0.00 0.00 2.32
2754 4698 3.069016 TCACTTAACGACAGAGAGGCAAA 59.931 43.478 0.00 0.00 0.00 3.68
2755 4699 2.626266 TCACTTAACGACAGAGAGGCAA 59.374 45.455 0.00 0.00 0.00 4.52
2756 4700 2.030185 GTCACTTAACGACAGAGAGGCA 60.030 50.000 0.00 0.00 33.43 4.75
2757 4701 2.597520 GTCACTTAACGACAGAGAGGC 58.402 52.381 0.00 0.00 33.43 4.70
2758 4702 2.820787 AGGTCACTTAACGACAGAGAGG 59.179 50.000 0.00 0.00 34.97 3.69
2759 4703 4.506886 AAGGTCACTTAACGACAGAGAG 57.493 45.455 0.00 0.00 34.49 3.20
2760 4704 7.692460 TTATAAGGTCACTTAACGACAGAGA 57.308 36.000 0.00 0.00 42.14 3.10
2761 4705 8.752766 TTTTATAAGGTCACTTAACGACAGAG 57.247 34.615 0.00 0.00 42.14 3.35
2762 4706 9.715121 ATTTTTATAAGGTCACTTAACGACAGA 57.285 29.630 0.00 0.00 42.14 3.41
2763 4707 9.755064 CATTTTTATAAGGTCACTTAACGACAG 57.245 33.333 0.00 0.00 42.14 3.51
2764 4708 8.231837 GCATTTTTATAAGGTCACTTAACGACA 58.768 33.333 0.00 0.00 42.14 4.35
2765 4709 7.695201 GGCATTTTTATAAGGTCACTTAACGAC 59.305 37.037 0.00 0.00 42.14 4.34
2766 4710 7.148205 GGGCATTTTTATAAGGTCACTTAACGA 60.148 37.037 0.00 0.00 42.14 3.85
2767 4711 6.970613 GGGCATTTTTATAAGGTCACTTAACG 59.029 38.462 0.00 0.00 42.14 3.18
2768 4712 8.063200 AGGGCATTTTTATAAGGTCACTTAAC 57.937 34.615 0.00 0.00 42.14 2.01
2769 4713 8.658840 AAGGGCATTTTTATAAGGTCACTTAA 57.341 30.769 0.00 0.00 42.14 1.85
2770 4714 7.340999 GGAAGGGCATTTTTATAAGGTCACTTA 59.659 37.037 0.00 0.00 42.95 2.24
2771 4715 6.154534 GGAAGGGCATTTTTATAAGGTCACTT 59.845 38.462 0.00 0.00 40.74 3.16
2772 4716 5.656859 GGAAGGGCATTTTTATAAGGTCACT 59.343 40.000 0.00 0.00 0.00 3.41
2773 4717 5.449999 CGGAAGGGCATTTTTATAAGGTCAC 60.450 44.000 0.00 0.00 0.00 3.67
2774 4718 4.642885 CGGAAGGGCATTTTTATAAGGTCA 59.357 41.667 0.00 0.00 0.00 4.02
2775 4719 4.643334 ACGGAAGGGCATTTTTATAAGGTC 59.357 41.667 0.00 0.00 0.00 3.85
2776 4720 4.606210 ACGGAAGGGCATTTTTATAAGGT 58.394 39.130 0.00 0.00 0.00 3.50
2777 4721 5.592104 AACGGAAGGGCATTTTTATAAGG 57.408 39.130 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.