Multiple sequence alignment - TraesCS5A01G291100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G291100 chr5A 100.000 7278 0 0 1 7278 502055112 502062389 0.000000e+00 13441.0
1 TraesCS5A01G291100 chr5A 94.295 894 46 5 6387 7278 454765076 454765966 0.000000e+00 1363.0
2 TraesCS5A01G291100 chr5D 91.078 1457 85 23 4964 6379 396283320 396284772 0.000000e+00 1929.0
3 TraesCS5A01G291100 chr5D 91.996 1087 73 7 4964 6036 396235301 396236387 0.000000e+00 1513.0
4 TraesCS5A01G291100 chr5D 91.954 1044 30 18 730 1757 396280626 396281631 0.000000e+00 1413.0
5 TraesCS5A01G291100 chr5D 84.719 890 91 22 2298 3154 396282120 396282997 0.000000e+00 848.0
6 TraesCS5A01G291100 chr5D 90.027 371 31 4 2729 3094 396234556 396234925 6.610000e-130 475.0
7 TraesCS5A01G291100 chr5D 96.040 202 8 0 6034 6235 396236517 396236718 5.440000e-86 329.0
8 TraesCS5A01G291100 chr5D 87.692 260 29 3 4051 4309 536531434 536531691 4.270000e-77 300.0
9 TraesCS5A01G291100 chr5D 87.225 227 18 4 1823 2038 396233578 396233804 1.570000e-61 248.0
10 TraesCS5A01G291100 chr5D 95.902 122 5 0 7076 7197 41365496 41365617 1.600000e-46 198.0
11 TraesCS5A01G291100 chr5D 90.972 144 6 3 6232 6373 396236744 396236882 3.470000e-43 187.0
12 TraesCS5A01G291100 chr5D 93.333 120 7 1 7073 7191 546778131 546778250 7.500000e-40 176.0
13 TraesCS5A01G291100 chr5D 84.545 110 14 3 3911 4017 564767012 564767121 9.990000e-19 106.0
14 TraesCS5A01G291100 chr5D 95.161 62 3 0 1823 1884 396281641 396281702 1.670000e-16 99.0
15 TraesCS5A01G291100 chr6A 94.812 906 29 6 6387 7278 593803981 593803080 0.000000e+00 1397.0
16 TraesCS5A01G291100 chr6A 94.426 897 45 5 6385 7278 585417516 585416622 0.000000e+00 1375.0
17 TraesCS5A01G291100 chr6A 80.428 327 50 12 4056 4373 376874567 376874246 3.390000e-58 237.0
18 TraesCS5A01G291100 chr6A 78.571 294 46 10 4690 4968 134907158 134906867 2.090000e-40 178.0
19 TraesCS5A01G291100 chrUn 94.058 892 48 4 6387 7278 24148001 24148887 0.000000e+00 1349.0
20 TraesCS5A01G291100 chr4D 93.855 895 50 4 6386 7278 22226989 22227880 0.000000e+00 1343.0
21 TraesCS5A01G291100 chr4D 89.449 635 43 7 1 629 485489315 485489931 0.000000e+00 780.0
22 TraesCS5A01G291100 chr4D 92.584 445 30 3 6387 6831 93386020 93385579 2.860000e-178 636.0
23 TraesCS5A01G291100 chr4D 88.963 299 30 3 4056 4352 505030797 505030500 4.150000e-97 366.0
24 TraesCS5A01G291100 chr4D 84.153 366 40 13 4048 4402 259951253 259950895 9.040000e-89 339.0
25 TraesCS5A01G291100 chr4D 87.179 273 24 5 4056 4326 505029660 505029923 4.270000e-77 300.0
26 TraesCS5A01G291100 chr4D 75.991 454 57 20 4482 4890 259950670 259950224 3.470000e-43 187.0
27 TraesCS5A01G291100 chr6B 93.324 719 40 3 6387 7105 543724083 543724793 0.000000e+00 1055.0
28 TraesCS5A01G291100 chr6B 90.991 555 49 1 3170 3723 516474437 516473883 0.000000e+00 747.0
29 TraesCS5A01G291100 chr6B 89.091 55 4 2 4826 4879 704686157 704686104 4.710000e-07 67.6
30 TraesCS5A01G291100 chr3A 94.469 669 32 3 1 664 725157911 725158579 0.000000e+00 1026.0
31 TraesCS5A01G291100 chr3A 94.170 669 31 4 1 664 725173307 725173972 0.000000e+00 1013.0
32 TraesCS5A01G291100 chr3A 83.544 553 82 8 3175 3723 63379888 63379341 6.510000e-140 508.0
33 TraesCS5A01G291100 chr3A 83.495 103 15 2 3911 4011 544423311 544423413 2.160000e-15 95.3
34 TraesCS5A01G291100 chr3A 83.810 105 11 6 3914 4014 749505674 749505572 2.160000e-15 95.3
35 TraesCS5A01G291100 chr2B 94.303 667 33 2 1 662 544978012 544977346 0.000000e+00 1016.0
36 TraesCS5A01G291100 chr2B 88.968 562 56 3 3162 3723 403560002 403559447 0.000000e+00 689.0
37 TraesCS5A01G291100 chr2B 90.323 124 12 0 6713 6836 529110736 529110859 5.840000e-36 163.0
38 TraesCS5A01G291100 chr5B 92.018 664 29 3 1 659 280609991 280610635 0.000000e+00 911.0
39 TraesCS5A01G291100 chr5B 85.922 206 18 4 5516 5721 476146267 476146073 7.400000e-50 209.0
40 TraesCS5A01G291100 chr5B 94.167 120 6 1 7073 7191 689920161 689920042 1.610000e-41 182.0
41 TraesCS5A01G291100 chr5B 96.629 89 3 0 6275 6363 476149199 476149287 1.640000e-31 148.0
42 TraesCS5A01G291100 chr5B 84.536 97 13 2 3912 4006 321410572 321410668 2.160000e-15 95.3
43 TraesCS5A01G291100 chr5B 89.091 55 6 0 4825 4879 267888423 267888369 1.310000e-07 69.4
44 TraesCS5A01G291100 chr7A 88.856 673 31 12 3 669 175872122 175872756 0.000000e+00 787.0
45 TraesCS5A01G291100 chr7A 89.331 553 55 4 3173 3723 151859685 151859135 0.000000e+00 691.0
46 TraesCS5A01G291100 chr7A 91.549 497 33 5 3235 3723 255584004 255584499 0.000000e+00 676.0
47 TraesCS5A01G291100 chr7B 88.291 632 67 4 2 626 5181208 5181839 0.000000e+00 750.0
48 TraesCS5A01G291100 chr7B 89.894 564 54 3 3170 3731 683975042 683974480 0.000000e+00 723.0
49 TraesCS5A01G291100 chr7B 89.107 560 60 1 3162 3721 583920389 583920947 0.000000e+00 695.0
50 TraesCS5A01G291100 chr7B 94.038 369 20 2 154 522 630141222 630140856 6.380000e-155 558.0
51 TraesCS5A01G291100 chr7B 89.744 117 6 4 547 658 630140862 630140747 2.120000e-30 145.0
52 TraesCS5A01G291100 chr7B 93.103 58 3 1 1 58 630141294 630141238 4.680000e-12 84.2
53 TraesCS5A01G291100 chr6D 89.100 578 54 8 3162 3738 260054600 260055169 0.000000e+00 710.0
54 TraesCS5A01G291100 chr3B 89.343 563 57 3 3162 3723 486620187 486620747 0.000000e+00 704.0
55 TraesCS5A01G291100 chr2D 91.982 449 27 9 6384 6831 15192106 15191666 8.020000e-174 621.0
56 TraesCS5A01G291100 chr2D 81.322 348 54 10 4048 4392 98321603 98321942 9.300000e-69 272.0
57 TraesCS5A01G291100 chr2D 82.474 97 13 4 3918 4011 574911361 574911456 1.680000e-11 82.4
58 TraesCS5A01G291100 chr2D 94.872 39 2 0 7025 7063 523629973 523630011 2.190000e-05 62.1
59 TraesCS5A01G291100 chr1B 92.073 328 24 2 6387 6714 572519038 572519363 1.850000e-125 460.0
60 TraesCS5A01G291100 chr1B 90.840 131 9 1 7061 7191 572519395 572519522 9.710000e-39 172.0
61 TraesCS5A01G291100 chr4A 87.645 259 28 4 4072 4327 87214385 87214128 1.540000e-76 298.0
62 TraesCS5A01G291100 chr4A 82.164 342 49 10 4058 4394 87213233 87213567 4.300000e-72 283.0
63 TraesCS5A01G291100 chr4A 77.189 491 67 17 4515 4963 87213910 87214397 2.030000e-60 244.0
64 TraesCS5A01G291100 chr4A 85.437 103 13 2 3911 4011 47456826 47456724 9.990000e-19 106.0
65 TraesCS5A01G291100 chr7D 88.393 224 23 2 4081 4303 24971211 24970990 4.330000e-67 267.0
66 TraesCS5A01G291100 chr7D 96.000 125 5 0 6909 7033 220208502 220208626 3.440000e-48 204.0
67 TraesCS5A01G291100 chr7D 94.872 39 2 0 7025 7063 220208720 220208758 2.190000e-05 62.1
68 TraesCS5A01G291100 chr1D 96.800 125 4 0 6909 7033 393338580 393338456 7.400000e-50 209.0
69 TraesCS5A01G291100 chr1D 96.800 125 4 0 6909 7033 453204749 453204873 7.400000e-50 209.0
70 TraesCS5A01G291100 chr1D 80.508 118 21 2 3896 4011 443829437 443829554 1.010000e-13 89.8
71 TraesCS5A01G291100 chr1D 94.872 39 2 0 7025 7063 453204967 453205005 2.190000e-05 62.1
72 TraesCS5A01G291100 chr1D 90.476 42 4 0 4826 4867 314689494 314689453 1.000000e-03 56.5
73 TraesCS5A01G291100 chr4B 82.857 105 16 2 3911 4013 116138996 116139100 7.770000e-15 93.5
74 TraesCS5A01G291100 chr4B 95.349 43 2 0 4825 4867 644006172 644006214 1.310000e-07 69.4
75 TraesCS5A01G291100 chr3D 83.495 103 14 3 3912 4012 446688165 446688266 7.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G291100 chr5A 502055112 502062389 7277 False 13441.00 13441 100.0000 1 7278 1 chr5A.!!$F2 7277
1 TraesCS5A01G291100 chr5A 454765076 454765966 890 False 1363.00 1363 94.2950 6387 7278 1 chr5A.!!$F1 891
2 TraesCS5A01G291100 chr5D 396280626 396284772 4146 False 1072.25 1929 90.7280 730 6379 4 chr5D.!!$F6 5649
3 TraesCS5A01G291100 chr5D 396233578 396236882 3304 False 550.40 1513 91.2520 1823 6373 5 chr5D.!!$F5 4550
4 TraesCS5A01G291100 chr6A 593803080 593803981 901 True 1397.00 1397 94.8120 6387 7278 1 chr6A.!!$R4 891
5 TraesCS5A01G291100 chr6A 585416622 585417516 894 True 1375.00 1375 94.4260 6385 7278 1 chr6A.!!$R3 893
6 TraesCS5A01G291100 chrUn 24148001 24148887 886 False 1349.00 1349 94.0580 6387 7278 1 chrUn.!!$F1 891
7 TraesCS5A01G291100 chr4D 22226989 22227880 891 False 1343.00 1343 93.8550 6386 7278 1 chr4D.!!$F1 892
8 TraesCS5A01G291100 chr4D 485489315 485489931 616 False 780.00 780 89.4490 1 629 1 chr4D.!!$F2 628
9 TraesCS5A01G291100 chr4D 259950224 259951253 1029 True 263.00 339 80.0720 4048 4890 2 chr4D.!!$R3 842
10 TraesCS5A01G291100 chr6B 543724083 543724793 710 False 1055.00 1055 93.3240 6387 7105 1 chr6B.!!$F1 718
11 TraesCS5A01G291100 chr6B 516473883 516474437 554 True 747.00 747 90.9910 3170 3723 1 chr6B.!!$R1 553
12 TraesCS5A01G291100 chr3A 725157911 725158579 668 False 1026.00 1026 94.4690 1 664 1 chr3A.!!$F2 663
13 TraesCS5A01G291100 chr3A 725173307 725173972 665 False 1013.00 1013 94.1700 1 664 1 chr3A.!!$F3 663
14 TraesCS5A01G291100 chr3A 63379341 63379888 547 True 508.00 508 83.5440 3175 3723 1 chr3A.!!$R1 548
15 TraesCS5A01G291100 chr2B 544977346 544978012 666 True 1016.00 1016 94.3030 1 662 1 chr2B.!!$R2 661
16 TraesCS5A01G291100 chr2B 403559447 403560002 555 True 689.00 689 88.9680 3162 3723 1 chr2B.!!$R1 561
17 TraesCS5A01G291100 chr5B 280609991 280610635 644 False 911.00 911 92.0180 1 659 1 chr5B.!!$F1 658
18 TraesCS5A01G291100 chr7A 175872122 175872756 634 False 787.00 787 88.8560 3 669 1 chr7A.!!$F1 666
19 TraesCS5A01G291100 chr7A 151859135 151859685 550 True 691.00 691 89.3310 3173 3723 1 chr7A.!!$R1 550
20 TraesCS5A01G291100 chr7B 5181208 5181839 631 False 750.00 750 88.2910 2 626 1 chr7B.!!$F1 624
21 TraesCS5A01G291100 chr7B 683974480 683975042 562 True 723.00 723 89.8940 3170 3731 1 chr7B.!!$R1 561
22 TraesCS5A01G291100 chr7B 583920389 583920947 558 False 695.00 695 89.1070 3162 3721 1 chr7B.!!$F2 559
23 TraesCS5A01G291100 chr7B 630140747 630141294 547 True 262.40 558 92.2950 1 658 3 chr7B.!!$R2 657
24 TraesCS5A01G291100 chr6D 260054600 260055169 569 False 710.00 710 89.1000 3162 3738 1 chr6D.!!$F1 576
25 TraesCS5A01G291100 chr3B 486620187 486620747 560 False 704.00 704 89.3430 3162 3723 1 chr3B.!!$F1 561
26 TraesCS5A01G291100 chr4A 87213233 87214397 1164 False 263.50 283 79.6765 4058 4963 2 chr4A.!!$F1 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 730 0.099791 AACCCAACGACGCAACAAAG 59.900 50.0 0.00 0.0 0.00 2.77 F
1803 1839 0.248702 GGGTTTCGTTCGCTGCAAAA 60.249 50.0 0.00 0.0 0.00 2.44 F
2076 2193 0.249953 TCGTACCTTTCAAGCGCCAA 60.250 50.0 2.29 0.0 0.00 4.52 F
2383 2502 0.258194 GGGAGAGAGGGGTCTACGAA 59.742 60.0 0.00 0.0 0.00 3.85 F
2649 2775 0.817654 TCTCGTAGCAGTGGATGTGG 59.182 55.0 0.00 0.0 0.00 4.17 F
4187 4372 0.034198 TCTGTGCCATTTTCGTCCGA 59.966 50.0 0.00 0.0 0.00 4.55 F
4211 4396 0.036010 AGGCCTTTGATCGTCAGTGG 60.036 55.0 0.00 0.0 0.00 4.00 F
4797 5289 0.392998 GTGACATCGGCAATGAGGGT 60.393 55.0 5.42 0.0 38.83 4.34 F
5870 6375 0.248949 TTTTGGCGTTTTACGGTGGC 60.249 50.0 1.14 0.0 42.82 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 2567 0.036388 AGCCGGAAACATGACGACAT 60.036 50.000 5.05 0.00 37.19 3.06 R
3551 3721 0.109723 TGAAGGGCGCAACTAAACCT 59.890 50.000 10.83 0.45 0.00 3.50 R
4074 4258 1.897802 GGTCGGGACAAAGTTAGAGGA 59.102 52.381 0.75 0.00 0.00 3.71 R
4180 4365 0.323629 AAAGGCCTTTGATCGGACGA 59.676 50.000 29.91 0.00 33.64 4.20 R
4437 4625 0.678048 GCTGCCTACAGGTGGGAAAG 60.678 60.000 5.96 3.65 44.63 2.62 R
5283 5788 0.445829 TGCAACATTATCCGTGTGCG 59.554 50.000 0.00 0.00 37.95 5.34 R
5662 6167 0.861450 GACAAAAATCATCGCGCCCG 60.861 55.000 0.00 0.00 0.00 6.13 R
6221 6871 0.322975 ACTGCAGCAGTAGAGGGTTG 59.677 55.000 27.22 0.00 43.46 3.77 R
7233 7930 2.046217 GGAGGCCAAACTCCGGTC 60.046 66.667 5.01 0.00 46.81 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 115 1.302511 GGCGCCAAGGAAGAAGTGA 60.303 57.895 24.80 0.00 0.00 3.41
122 125 0.319900 GAAGAAGTGAGTGAGGCGCA 60.320 55.000 10.83 0.00 0.00 6.09
188 191 3.917760 GGCGATGGGAGTCCTCGG 61.918 72.222 19.20 4.72 35.62 4.63
231 234 0.679505 CGTTGGTGAAGAGTGGAGGA 59.320 55.000 0.00 0.00 0.00 3.71
274 278 1.460689 AGTTGAGGAACCGGGTGGA 60.461 57.895 6.32 0.00 39.21 4.02
475 489 4.865761 GCGGCGCGAGGTATGTGA 62.866 66.667 19.09 0.00 0.00 3.58
476 490 2.655364 CGGCGCGAGGTATGTGAG 60.655 66.667 12.10 0.00 0.00 3.51
477 491 2.279517 GGCGCGAGGTATGTGAGG 60.280 66.667 12.10 0.00 0.00 3.86
478 492 2.494918 GCGCGAGGTATGTGAGGT 59.505 61.111 12.10 0.00 0.00 3.85
479 493 1.731433 GGCGCGAGGTATGTGAGGTA 61.731 60.000 12.10 0.00 0.00 3.08
480 494 0.101759 GCGCGAGGTATGTGAGGTAA 59.898 55.000 12.10 0.00 0.00 2.85
481 495 1.864435 GCGCGAGGTATGTGAGGTAAG 60.864 57.143 12.10 0.00 0.00 2.34
482 496 1.269102 CGCGAGGTATGTGAGGTAAGG 60.269 57.143 0.00 0.00 0.00 2.69
483 497 1.755380 GCGAGGTATGTGAGGTAAGGT 59.245 52.381 0.00 0.00 0.00 3.50
487 501 2.024655 AGGTATGTGAGGTAAGGTCGGA 60.025 50.000 0.00 0.00 0.00 4.55
504 518 1.767692 GAAGGTTGAGGAAGGGCCA 59.232 57.895 6.18 0.00 40.02 5.36
643 663 3.351794 TTGCAATCGGGTACATGGTTA 57.648 42.857 0.00 0.00 0.00 2.85
704 724 3.498927 TTTTAAAAACCCAACGACGCA 57.501 38.095 0.00 0.00 0.00 5.24
705 725 3.498927 TTTAAAAACCCAACGACGCAA 57.501 38.095 0.00 0.00 0.00 4.85
706 726 2.471862 TAAAAACCCAACGACGCAAC 57.528 45.000 0.00 0.00 0.00 4.17
707 727 0.526662 AAAAACCCAACGACGCAACA 59.473 45.000 0.00 0.00 0.00 3.33
708 728 0.526662 AAAACCCAACGACGCAACAA 59.473 45.000 0.00 0.00 0.00 2.83
709 729 0.526662 AAACCCAACGACGCAACAAA 59.473 45.000 0.00 0.00 0.00 2.83
710 730 0.099791 AACCCAACGACGCAACAAAG 59.900 50.000 0.00 0.00 0.00 2.77
711 731 1.657181 CCCAACGACGCAACAAAGC 60.657 57.895 0.00 0.00 0.00 3.51
712 732 1.355210 CCAACGACGCAACAAAGCT 59.645 52.632 0.00 0.00 0.00 3.74
713 733 0.657368 CCAACGACGCAACAAAGCTC 60.657 55.000 0.00 0.00 0.00 4.09
714 734 0.986874 CAACGACGCAACAAAGCTCG 60.987 55.000 0.00 0.00 39.40 5.03
715 735 2.497628 CGACGCAACAAAGCTCGC 60.498 61.111 0.00 0.00 31.98 5.03
716 736 2.127232 GACGCAACAAAGCTCGCC 60.127 61.111 0.00 0.00 0.00 5.54
717 737 3.595108 GACGCAACAAAGCTCGCCC 62.595 63.158 0.00 0.00 0.00 6.13
718 738 3.659092 CGCAACAAAGCTCGCCCA 61.659 61.111 0.00 0.00 0.00 5.36
719 739 2.727544 GCAACAAAGCTCGCCCAA 59.272 55.556 0.00 0.00 0.00 4.12
720 740 1.661509 GCAACAAAGCTCGCCCAAC 60.662 57.895 0.00 0.00 0.00 3.77
721 741 1.007387 CAACAAAGCTCGCCCAACC 60.007 57.895 0.00 0.00 0.00 3.77
722 742 2.200337 AACAAAGCTCGCCCAACCC 61.200 57.895 0.00 0.00 0.00 4.11
723 743 2.282462 CAAAGCTCGCCCAACCCT 60.282 61.111 0.00 0.00 0.00 4.34
724 744 1.903404 CAAAGCTCGCCCAACCCTT 60.903 57.895 0.00 0.00 0.00 3.95
725 745 1.603739 AAAGCTCGCCCAACCCTTC 60.604 57.895 0.00 0.00 0.00 3.46
726 746 2.069165 AAAGCTCGCCCAACCCTTCT 62.069 55.000 0.00 0.00 0.00 2.85
727 747 2.436824 GCTCGCCCAACCCTTCTC 60.437 66.667 0.00 0.00 0.00 2.87
728 748 2.125512 CTCGCCCAACCCTTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
759 779 8.258708 GGATGATAGACCAGTTAGTTTGTACTT 58.741 37.037 0.00 0.00 35.78 2.24
764 784 5.839606 AGACCAGTTAGTTTGTACTTCCTCT 59.160 40.000 0.00 0.00 35.78 3.69
769 789 6.864165 CAGTTAGTTTGTACTTCCTCTGTCTC 59.136 42.308 0.00 0.00 35.78 3.36
770 790 4.506886 AGTTTGTACTTCCTCTGTCTCG 57.493 45.455 0.00 0.00 0.00 4.04
774 794 0.677098 TACTTCCTCTGTCTCGCGCT 60.677 55.000 5.56 0.00 0.00 5.92
791 811 5.289595 TCGCGCTCTTTTATATTGTGAGAT 58.710 37.500 5.56 0.00 0.00 2.75
794 814 6.588552 GCGCTCTTTTATATTGTGAGATGAG 58.411 40.000 0.00 0.00 0.00 2.90
795 815 6.422100 GCGCTCTTTTATATTGTGAGATGAGA 59.578 38.462 0.00 0.00 0.00 3.27
796 816 7.117523 GCGCTCTTTTATATTGTGAGATGAGAT 59.882 37.037 0.00 0.00 0.00 2.75
797 817 8.433893 CGCTCTTTTATATTGTGAGATGAGATG 58.566 37.037 0.00 0.00 0.00 2.90
798 818 8.719648 GCTCTTTTATATTGTGAGATGAGATGG 58.280 37.037 0.00 0.00 0.00 3.51
843 874 2.418884 GCTAAGAAGGCCTGTAGGTCAC 60.419 54.545 5.69 0.00 43.78 3.67
848 879 1.918800 GGCCTGTAGGTCACCCAGT 60.919 63.158 0.00 0.00 40.23 4.00
905 936 5.701290 ACCGGTTGACTAAAAAGATCAGAAG 59.299 40.000 0.00 0.00 0.00 2.85
949 980 1.419374 CTATGGATGCTTCGCGGTAC 58.581 55.000 6.13 0.00 0.00 3.34
971 1002 0.528466 ATGCTATCAGTGTCACGCCG 60.528 55.000 0.00 0.00 0.00 6.46
986 1017 4.745751 CCGAACCCCGCGTGCTTA 62.746 66.667 4.92 0.00 36.84 3.09
987 1018 3.484547 CGAACCCCGCGTGCTTAC 61.485 66.667 4.92 0.00 0.00 2.34
988 1019 3.484547 GAACCCCGCGTGCTTACG 61.485 66.667 4.92 0.00 0.00 3.18
1017 1048 4.000988 ACTTACGAGAATGAAATGCGGTT 58.999 39.130 0.00 0.00 0.00 4.44
1065 1096 3.305177 TTGGTTCGACTAGGCCGCC 62.305 63.158 0.00 0.00 0.00 6.13
1171 1202 6.662865 TCCTCTCATTTCCATTAGAGCTAG 57.337 41.667 0.00 0.00 35.24 3.42
1172 1203 6.139671 TCCTCTCATTTCCATTAGAGCTAGT 58.860 40.000 0.00 0.00 35.24 2.57
1173 1204 7.298374 TCCTCTCATTTCCATTAGAGCTAGTA 58.702 38.462 0.00 0.00 35.24 1.82
1174 1205 7.231722 TCCTCTCATTTCCATTAGAGCTAGTAC 59.768 40.741 0.00 0.00 35.24 2.73
1175 1206 7.232534 CCTCTCATTTCCATTAGAGCTAGTACT 59.767 40.741 0.00 0.00 35.24 2.73
1176 1207 9.290988 CTCTCATTTCCATTAGAGCTAGTACTA 57.709 37.037 1.89 1.89 29.96 1.82
1281 1312 2.331805 CCGCGAGATCGACCGAAT 59.668 61.111 8.23 0.00 43.02 3.34
1325 1356 2.417515 GGAAAACTTGAAACCCAACGCA 60.418 45.455 0.00 0.00 0.00 5.24
1331 1362 2.500509 TGAAACCCAACGCATTTGTC 57.499 45.000 0.00 0.00 32.71 3.18
1454 1485 0.528924 CGGTCGTGTGGGTGAATCTA 59.471 55.000 0.00 0.00 0.00 1.98
1549 1580 1.069090 GAGCCGTGGTTGTGACTCA 59.931 57.895 0.00 0.00 0.00 3.41
1570 1601 4.755507 GGACGAGGGGACGGAGGT 62.756 72.222 0.00 0.00 37.61 3.85
1583 1614 4.539881 GAGGTCTCGTCCTCGCGC 62.540 72.222 0.00 0.00 43.42 6.86
1619 1650 2.483188 CGTAGGGGAAATCTTCTTCGGG 60.483 54.545 0.00 0.00 0.00 5.14
1629 1660 6.150474 GGAAATCTTCTTCGGGTTATCAACAA 59.850 38.462 0.00 0.00 0.00 2.83
1631 1662 4.320870 TCTTCTTCGGGTTATCAACAACC 58.679 43.478 0.00 0.00 46.15 3.77
1652 1683 0.475632 TGGCCCTCCTTTCCTTCTCA 60.476 55.000 0.00 0.00 0.00 3.27
1667 1698 5.419542 TCCTTCTCATGTACATGTAACTGC 58.580 41.667 30.03 0.00 39.72 4.40
1682 1713 5.730550 TGTAACTGCGATCTTTCAGGTATT 58.269 37.500 7.28 0.00 35.27 1.89
1684 1715 6.653320 TGTAACTGCGATCTTTCAGGTATTTT 59.347 34.615 7.28 0.00 35.27 1.82
1713 1746 9.131791 TCTATTTTATCCCTTTTAGGTTCATGC 57.868 33.333 0.00 0.00 31.93 4.06
1714 1747 7.732222 ATTTTATCCCTTTTAGGTTCATGCA 57.268 32.000 0.00 0.00 31.93 3.96
1715 1748 7.546250 TTTTATCCCTTTTAGGTTCATGCAA 57.454 32.000 0.00 0.00 31.93 4.08
1765 1801 5.401033 TTTTTGGTGCATTTCGACATTTG 57.599 34.783 0.00 0.00 0.00 2.32
1766 1802 3.724508 TTGGTGCATTTCGACATTTGT 57.275 38.095 0.00 0.00 0.00 2.83
1767 1803 3.010624 TGGTGCATTTCGACATTTGTG 57.989 42.857 0.00 0.00 0.00 3.33
1768 1804 2.360483 TGGTGCATTTCGACATTTGTGT 59.640 40.909 0.00 0.00 0.00 3.72
1769 1805 2.725723 GGTGCATTTCGACATTTGTGTG 59.274 45.455 0.00 0.00 0.00 3.82
1770 1806 3.371168 GTGCATTTCGACATTTGTGTGT 58.629 40.909 0.00 0.00 34.39 3.72
1771 1807 3.796178 GTGCATTTCGACATTTGTGTGTT 59.204 39.130 0.00 0.00 31.16 3.32
1772 1808 4.041049 TGCATTTCGACATTTGTGTGTTC 58.959 39.130 0.00 0.00 31.16 3.18
1773 1809 4.041049 GCATTTCGACATTTGTGTGTTCA 58.959 39.130 0.00 0.00 31.16 3.18
1774 1810 4.085619 GCATTTCGACATTTGTGTGTTCAC 60.086 41.667 0.00 0.00 44.08 3.18
1785 1821 3.963383 GTGTGTTCACAACCTTACTGG 57.037 47.619 7.22 0.00 43.37 4.00
1786 1822 2.616842 GTGTGTTCACAACCTTACTGGG 59.383 50.000 7.22 0.00 43.37 4.45
1787 1823 2.240160 TGTGTTCACAACCTTACTGGGT 59.760 45.455 2.99 0.00 42.05 4.51
1789 1825 3.697542 GTGTTCACAACCTTACTGGGTTT 59.302 43.478 0.00 0.00 46.21 3.27
1790 1826 3.949113 TGTTCACAACCTTACTGGGTTTC 59.051 43.478 0.00 0.00 46.21 2.78
1791 1827 2.841215 TCACAACCTTACTGGGTTTCG 58.159 47.619 0.00 0.00 46.21 3.46
1792 1828 2.171027 TCACAACCTTACTGGGTTTCGT 59.829 45.455 0.00 0.00 46.21 3.85
1793 1829 2.946990 CACAACCTTACTGGGTTTCGTT 59.053 45.455 0.00 0.00 46.21 3.85
1794 1830 3.002965 CACAACCTTACTGGGTTTCGTTC 59.997 47.826 0.00 0.00 46.21 3.95
1795 1831 2.159327 ACCTTACTGGGTTTCGTTCG 57.841 50.000 0.00 0.00 41.11 3.95
1796 1832 0.794473 CCTTACTGGGTTTCGTTCGC 59.206 55.000 0.00 0.00 0.00 4.70
1797 1833 1.607251 CCTTACTGGGTTTCGTTCGCT 60.607 52.381 0.00 0.00 0.00 4.93
1798 1834 1.459592 CTTACTGGGTTTCGTTCGCTG 59.540 52.381 0.00 0.00 0.00 5.18
1799 1835 0.947180 TACTGGGTTTCGTTCGCTGC 60.947 55.000 0.00 0.00 0.00 5.25
1800 1836 2.203084 TGGGTTTCGTTCGCTGCA 60.203 55.556 0.00 0.00 0.00 4.41
1801 1837 1.781025 CTGGGTTTCGTTCGCTGCAA 61.781 55.000 0.00 0.00 0.00 4.08
1802 1838 1.357334 GGGTTTCGTTCGCTGCAAA 59.643 52.632 0.00 0.00 0.00 3.68
1803 1839 0.248702 GGGTTTCGTTCGCTGCAAAA 60.249 50.000 0.00 0.00 0.00 2.44
1804 1840 1.551145 GGTTTCGTTCGCTGCAAAAA 58.449 45.000 0.00 0.00 0.00 1.94
1830 1866 3.340814 AGCCTTCAAATCAGATGACGT 57.659 42.857 0.00 0.00 0.00 4.34
1947 1993 0.946221 GGCAGACGTCTTCACCACTG 60.946 60.000 17.26 3.90 0.00 3.66
1980 2027 0.946221 CACTCGGGAAGCTGTGTCAC 60.946 60.000 0.00 0.00 0.00 3.67
1987 2034 2.105960 GAAGCTGTGTCACGTGTGGC 62.106 60.000 16.51 12.97 35.37 5.01
2003 2050 0.394192 TGGCCATCAAGGATAGAGCG 59.606 55.000 0.00 0.00 41.22 5.03
2050 2167 4.262506 CCCTCGGTCATTATCTTAAGGTCC 60.263 50.000 1.85 0.00 0.00 4.46
2052 2169 5.279056 CCTCGGTCATTATCTTAAGGTCCTC 60.279 48.000 1.85 0.00 0.00 3.71
2053 2170 4.277672 TCGGTCATTATCTTAAGGTCCTCG 59.722 45.833 1.85 0.00 0.00 4.63
2059 2176 1.035932 TCTTAAGGTCCTCGCCCTCG 61.036 60.000 1.85 0.00 0.00 4.63
2076 2193 0.249953 TCGTACCTTTCAAGCGCCAA 60.250 50.000 2.29 0.00 0.00 4.52
2097 2214 2.828520 ACCTGCCGAGTATGATCCATAG 59.171 50.000 0.00 0.00 0.00 2.23
2120 2237 2.834618 GCATTTGATCGCGGGGGTC 61.835 63.158 6.13 0.00 0.00 4.46
2143 2261 2.765969 CTGGTTGGGGTGCTGGAT 59.234 61.111 0.00 0.00 0.00 3.41
2149 2267 3.338250 GGGGTGCTGGATGGGTGA 61.338 66.667 0.00 0.00 0.00 4.02
2158 2276 2.092429 GCTGGATGGGTGACTAAATCCA 60.092 50.000 11.80 11.80 36.80 3.41
2161 2279 3.053693 TGGATGGGTGACTAAATCCAAGG 60.054 47.826 10.51 0.00 35.50 3.61
2175 2293 7.953493 ACTAAATCCAAGGGAAATCTTTGGTTA 59.047 33.333 13.22 7.79 34.34 2.85
2177 2295 4.086457 TCCAAGGGAAATCTTTGGTTAGC 58.914 43.478 13.22 0.00 0.00 3.09
2187 2305 1.103987 TTTGGTTAGCGTTGCCAGCA 61.104 50.000 0.00 0.00 37.01 4.41
2199 2317 1.689984 TGCCAGCAACAATCTTGACA 58.310 45.000 0.00 0.00 0.00 3.58
2205 2323 3.567164 CAGCAACAATCTTGACAACTCCT 59.433 43.478 0.00 0.00 0.00 3.69
2258 2377 2.021832 GGTACCTACCCCTCCCTCA 58.978 63.158 4.06 0.00 40.53 3.86
2261 2380 1.504221 GTACCTACCCCTCCCTCATCT 59.496 57.143 0.00 0.00 0.00 2.90
2262 2381 0.266152 ACCTACCCCTCCCTCATCTG 59.734 60.000 0.00 0.00 0.00 2.90
2263 2382 0.472734 CCTACCCCTCCCTCATCTGG 60.473 65.000 0.00 0.00 0.00 3.86
2265 2384 2.621672 TACCCCTCCCTCATCTGGGC 62.622 65.000 0.00 0.00 46.67 5.36
2267 2386 3.554342 CCTCCCTCATCTGGGCGG 61.554 72.222 0.00 0.00 46.67 6.13
2268 2387 4.247380 CTCCCTCATCTGGGCGGC 62.247 72.222 0.00 0.00 46.67 6.53
2271 2390 4.598894 CCTCATCTGGGCGGCGAG 62.599 72.222 12.98 15.09 0.00 5.03
2285 2404 2.582226 CGAGCTCGGCATGCGTTA 60.582 61.111 28.40 0.00 35.37 3.18
2286 2405 1.951130 CGAGCTCGGCATGCGTTAT 60.951 57.895 28.40 0.00 35.37 1.89
2287 2406 0.663269 CGAGCTCGGCATGCGTTATA 60.663 55.000 28.40 0.00 35.37 0.98
2288 2407 1.497991 GAGCTCGGCATGCGTTATAA 58.502 50.000 12.44 0.00 35.28 0.98
2289 2408 1.192534 GAGCTCGGCATGCGTTATAAC 59.807 52.381 12.44 5.47 35.28 1.89
2290 2409 0.934496 GCTCGGCATGCGTTATAACA 59.066 50.000 12.44 0.00 0.00 2.41
2291 2410 1.329292 GCTCGGCATGCGTTATAACAA 59.671 47.619 12.44 3.63 0.00 2.83
2292 2411 2.223157 GCTCGGCATGCGTTATAACAAA 60.223 45.455 12.44 3.27 0.00 2.83
2293 2412 3.548014 GCTCGGCATGCGTTATAACAAAT 60.548 43.478 12.44 5.45 0.00 2.32
2294 2413 3.946402 TCGGCATGCGTTATAACAAATG 58.054 40.909 12.44 16.65 0.00 2.32
2295 2414 3.042189 CGGCATGCGTTATAACAAATGG 58.958 45.455 20.70 6.43 0.00 3.16
2296 2415 3.242903 CGGCATGCGTTATAACAAATGGA 60.243 43.478 20.70 7.10 0.00 3.41
2326 2445 5.629133 GCCTTTATCTGTTATGGAGTGGACA 60.629 44.000 0.00 0.00 0.00 4.02
2356 2475 2.160205 GTTGTAACCTTCTTGGAGGCC 58.840 52.381 0.00 0.00 40.65 5.19
2358 2477 2.062636 TGTAACCTTCTTGGAGGCCTT 58.937 47.619 6.77 0.00 40.65 4.35
2359 2478 2.224769 TGTAACCTTCTTGGAGGCCTTG 60.225 50.000 6.77 0.00 40.65 3.61
2383 2502 0.258194 GGGAGAGAGGGGTCTACGAA 59.742 60.000 0.00 0.00 0.00 3.85
2410 2529 1.214175 TGGTGTGGTTGATGGACACTT 59.786 47.619 0.00 0.00 39.95 3.16
2422 2541 1.822186 GACACTTGGTGGCGGTGTT 60.822 57.895 0.00 0.00 43.08 3.32
2424 2543 3.216292 ACTTGGTGGCGGTGTTGC 61.216 61.111 0.00 0.00 0.00 4.17
2433 2552 2.268076 GCGGTGTTGCCATCAAGGT 61.268 57.895 0.00 0.00 40.61 3.50
2476 2602 1.135575 CGGCTCAATTGCAACTCCTTC 60.136 52.381 0.00 0.00 34.04 3.46
2486 2612 1.540363 GCAACTCCTTCTGGTCGTTCA 60.540 52.381 0.00 0.00 34.23 3.18
2499 2625 2.063266 GTCGTTCATGCTCGGTTTGTA 58.937 47.619 8.87 0.00 0.00 2.41
2503 2629 2.747446 GTTCATGCTCGGTTTGTATGGT 59.253 45.455 0.00 0.00 0.00 3.55
2554 2680 0.968393 CTAGGCGAGGAGGGGATAGC 60.968 65.000 0.00 0.00 0.00 2.97
2556 2682 2.203714 GCGAGGAGGGGATAGCCT 60.204 66.667 0.00 0.00 33.97 4.58
2557 2683 2.279810 GCGAGGAGGGGATAGCCTC 61.280 68.421 0.00 0.00 43.73 4.70
2591 2717 3.451793 TAGCAACATGGCTACGGTG 57.548 52.632 0.00 0.00 43.70 4.94
2613 2739 4.647399 TGGTATGAACATGGTGTCGATCTA 59.353 41.667 0.00 0.00 0.00 1.98
2647 2773 2.130272 TCTCTCGTAGCAGTGGATGT 57.870 50.000 0.00 0.00 0.00 3.06
2649 2775 0.817654 TCTCGTAGCAGTGGATGTGG 59.182 55.000 0.00 0.00 0.00 4.17
2700 2826 2.769095 GAGGTCCTCATCCTTAGCAACT 59.231 50.000 14.46 0.00 35.20 3.16
2701 2827 3.961408 GAGGTCCTCATCCTTAGCAACTA 59.039 47.826 14.46 0.00 35.20 2.24
2720 2846 2.770164 ATTTCTCTTCGTGGGTGGAG 57.230 50.000 0.00 0.00 0.00 3.86
2721 2847 1.712056 TTTCTCTTCGTGGGTGGAGA 58.288 50.000 0.00 0.00 33.69 3.71
2722 2848 1.257743 TTCTCTTCGTGGGTGGAGAG 58.742 55.000 0.00 0.00 36.41 3.20
2723 2849 1.216710 CTCTTCGTGGGTGGAGAGC 59.783 63.158 0.00 0.00 0.00 4.09
2724 2850 1.228894 TCTTCGTGGGTGGAGAGCT 60.229 57.895 0.00 0.00 0.00 4.09
2725 2851 1.216710 CTTCGTGGGTGGAGAGCTC 59.783 63.158 5.27 5.27 0.00 4.09
2727 2853 4.135153 CGTGGGTGGAGAGCTCGG 62.135 72.222 8.37 0.00 0.00 4.63
2742 2899 1.910580 CTCGGCATAGTGGGGTGGTT 61.911 60.000 0.00 0.00 0.00 3.67
2749 2906 1.870064 TAGTGGGGTGGTTAGGCTAC 58.130 55.000 0.00 0.00 0.00 3.58
2766 2923 1.762957 CTACGAATCTCCCATGGTGGT 59.237 52.381 11.73 1.45 35.17 4.16
2772 2929 4.340489 TCCCATGGTGGTCCGGGA 62.340 66.667 11.73 0.00 39.84 5.14
2804 2965 1.621814 CCCGACTCTAGGGTGAACAAA 59.378 52.381 0.00 0.00 43.89 2.83
2806 2967 2.353803 CCGACTCTAGGGTGAACAAAGG 60.354 54.545 0.00 0.00 0.00 3.11
2807 2968 2.299297 CGACTCTAGGGTGAACAAAGGT 59.701 50.000 0.00 0.00 0.00 3.50
2808 2969 3.665190 GACTCTAGGGTGAACAAAGGTG 58.335 50.000 0.00 0.00 0.00 4.00
2810 2971 3.325135 ACTCTAGGGTGAACAAAGGTGAG 59.675 47.826 0.00 0.00 0.00 3.51
2811 2972 2.038557 TCTAGGGTGAACAAAGGTGAGC 59.961 50.000 0.00 0.00 0.00 4.26
2852 3014 0.840617 TGGAACAGGCTGGTACAACA 59.159 50.000 16.89 4.73 38.70 3.33
2867 3029 2.881074 ACAACATCGATTCACCTCTCG 58.119 47.619 0.00 0.00 36.25 4.04
2953 3115 5.414765 TGCTTACACTCTAGAGATTCGTTCA 59.585 40.000 26.57 11.80 0.00 3.18
3007 3171 7.664318 TGTACCCTCTCTTATTTTCACTTTTCC 59.336 37.037 0.00 0.00 0.00 3.13
3008 3172 6.010850 ACCCTCTCTTATTTTCACTTTTCCC 58.989 40.000 0.00 0.00 0.00 3.97
3009 3173 6.010219 CCCTCTCTTATTTTCACTTTTCCCA 58.990 40.000 0.00 0.00 0.00 4.37
3026 3190 2.361757 TCCCACTTGCTTGTTGTTCATG 59.638 45.455 0.00 0.00 0.00 3.07
3027 3191 2.546373 CCCACTTGCTTGTTGTTCATGG 60.546 50.000 0.00 0.00 0.00 3.66
3040 3204 6.908825 TGTTGTTCATGGTGCTTATAAGTTC 58.091 36.000 13.91 7.29 0.00 3.01
3044 3208 6.374333 TGTTCATGGTGCTTATAAGTTCTTCC 59.626 38.462 13.91 9.52 0.00 3.46
3060 3224 6.773638 AGTTCTTCCATCAACTCATTGTACT 58.226 36.000 0.00 0.00 37.11 2.73
3062 3226 7.389053 AGTTCTTCCATCAACTCATTGTACTTC 59.611 37.037 0.00 0.00 37.11 3.01
3068 3232 8.154203 TCCATCAACTCATTGTACTTCTTGTTA 58.846 33.333 0.00 0.00 37.11 2.41
3151 3316 8.918202 ATTTCAGAACACCACTACTTTAATCA 57.082 30.769 0.00 0.00 0.00 2.57
3152 3317 8.918202 TTTCAGAACACCACTACTTTAATCAT 57.082 30.769 0.00 0.00 0.00 2.45
3153 3318 8.918202 TTCAGAACACCACTACTTTAATCATT 57.082 30.769 0.00 0.00 0.00 2.57
3160 3325 9.706691 ACACCACTACTTTAATCATTATATCGG 57.293 33.333 0.00 0.00 0.00 4.18
3167 3332 7.365741 ACTTTAATCATTATATCGGTCGTCGT 58.634 34.615 0.00 0.00 40.32 4.34
3228 3394 2.743928 GCAGGTTGTCTCCGGCAG 60.744 66.667 0.00 0.00 45.39 4.85
3249 3415 2.092753 GCTTTGGATCCTGATCTGGTGA 60.093 50.000 14.23 0.66 37.92 4.02
3260 3426 4.338879 CTGATCTGGTGACTTTGGGATTT 58.661 43.478 0.00 0.00 0.00 2.17
3285 3452 0.983378 ACTAGGCCAGGCGAAATCCT 60.983 55.000 5.01 0.00 36.78 3.24
3299 3466 4.722700 TCCTTGCTCGGCTTGCCC 62.723 66.667 6.02 0.00 0.00 5.36
3385 3553 1.135083 CCGTGCACCTCTTCGAGTATT 60.135 52.381 12.15 0.00 0.00 1.89
3434 3602 1.138883 CGGATGGTGACGACGTCAT 59.861 57.895 31.30 17.46 44.63 3.06
3513 3683 3.927142 GGAATTGAAGATGTTCGACGTCT 59.073 43.478 14.70 0.00 45.78 4.18
3528 3698 4.022589 TCGACGTCTTACTGATTTGGTCTT 60.023 41.667 14.70 0.00 0.00 3.01
3537 3707 7.674348 TCTTACTGATTTGGTCTTCTCCTCTAA 59.326 37.037 0.00 0.00 0.00 2.10
3540 3710 7.334858 ACTGATTTGGTCTTCTCCTCTAATTC 58.665 38.462 0.00 0.00 0.00 2.17
3551 3721 8.120538 TCTTCTCCTCTAATTCTAGGTTTGGTA 58.879 37.037 6.03 0.00 34.30 3.25
3564 3734 2.351060 GGTTTGGTAGGTTTAGTTGCGC 60.351 50.000 0.00 0.00 0.00 6.09
3618 3788 1.607801 CTCTGCTCCGGACACCATGA 61.608 60.000 0.00 0.00 0.00 3.07
3652 3822 3.186205 TGCGTTCATGTCATGTGTTGTAG 59.814 43.478 12.54 1.04 0.00 2.74
3654 3824 3.186205 CGTTCATGTCATGTGTTGTAGCA 59.814 43.478 12.54 0.00 0.00 3.49
3661 3831 9.171877 TCATGTCATGTGTTGTAGCATTTATTA 57.828 29.630 12.54 0.00 0.00 0.98
3781 3951 5.628193 TGTTCGTCTTTCTTTCGATGAGTAC 59.372 40.000 0.00 0.00 33.72 2.73
3827 3999 4.655762 AGTTTTCAAGTTTGCTTCTCCC 57.344 40.909 0.00 0.00 31.49 4.30
3830 4002 5.891551 AGTTTTCAAGTTTGCTTCTCCCTTA 59.108 36.000 0.00 0.00 31.49 2.69
3835 4007 6.173339 TCAAGTTTGCTTCTCCCTTATACAG 58.827 40.000 0.00 0.00 31.49 2.74
3842 4014 7.253905 TGCTTCTCCCTTATACAGTAGTTTT 57.746 36.000 0.00 0.00 0.00 2.43
3902 4079 5.298026 TGTGCTTTCAAAGTTATGTGTGCTA 59.702 36.000 0.00 0.00 0.00 3.49
3908 4085 8.850454 TTTCAAAGTTATGTGTGCTAGTTTTC 57.150 30.769 0.00 0.00 0.00 2.29
3936 4113 6.005198 GTGTACATCCTAGCTATGTAGAGGT 58.995 44.000 13.53 6.84 39.76 3.85
3966 4144 8.574251 TGTATGCTATTTGTGTTTGTATCCTT 57.426 30.769 0.00 0.00 0.00 3.36
3975 4153 6.403866 TGTGTTTGTATCCTTTTGATGCTT 57.596 33.333 0.00 0.00 37.04 3.91
4054 4238 9.620660 GTTATGTTGGTTCCTAGTGTTTATTTG 57.379 33.333 0.00 0.00 0.00 2.32
4055 4239 7.833285 ATGTTGGTTCCTAGTGTTTATTTGT 57.167 32.000 0.00 0.00 0.00 2.83
4056 4240 8.927675 ATGTTGGTTCCTAGTGTTTATTTGTA 57.072 30.769 0.00 0.00 0.00 2.41
4107 4291 1.200519 CCCGACCTCATCTTTACCCA 58.799 55.000 0.00 0.00 0.00 4.51
4142 4327 4.654262 GTGATCAACTATACCCCTCTTCCA 59.346 45.833 0.00 0.00 0.00 3.53
4170 4355 5.201243 GTGCCCTTATGAAAATACCCTTCT 58.799 41.667 0.00 0.00 0.00 2.85
4171 4356 5.067805 GTGCCCTTATGAAAATACCCTTCTG 59.932 44.000 0.00 0.00 0.00 3.02
4176 4361 3.517296 TGAAAATACCCTTCTGTGCCA 57.483 42.857 0.00 0.00 0.00 4.92
4180 4365 5.306678 TGAAAATACCCTTCTGTGCCATTTT 59.693 36.000 0.00 0.00 0.00 1.82
4184 4369 1.200020 CCCTTCTGTGCCATTTTCGTC 59.800 52.381 0.00 0.00 0.00 4.20
4187 4372 0.034198 TCTGTGCCATTTTCGTCCGA 59.966 50.000 0.00 0.00 0.00 4.55
4211 4396 0.036010 AGGCCTTTGATCGTCAGTGG 60.036 55.000 0.00 0.00 0.00 4.00
4220 4405 3.028130 TGATCGTCAGTGGGCTGTTATA 58.972 45.455 0.00 0.00 43.05 0.98
4257 4443 2.167487 TCGCTGCCTATGTCACATACAA 59.833 45.455 0.00 0.00 42.70 2.41
4258 4444 2.935849 CGCTGCCTATGTCACATACAAA 59.064 45.455 0.00 0.00 42.70 2.83
4282 4468 3.239449 GGACCCACCCAAAGAAAAGAAT 58.761 45.455 0.00 0.00 0.00 2.40
4312 4498 7.510675 AAAAACTATCTCCCATCTCTACCAA 57.489 36.000 0.00 0.00 0.00 3.67
4387 4575 1.388065 CCTCTTCATCTCCGGCGAGT 61.388 60.000 9.30 0.00 37.40 4.18
4394 4582 2.888464 ATCTCCGGCGAGTTCTCCGA 62.888 60.000 9.30 0.00 46.30 4.55
4396 4584 3.744719 CCGGCGAGTTCTCCGACA 61.745 66.667 9.30 0.00 46.30 4.35
4397 4585 2.202492 CGGCGAGTTCTCCGACAG 60.202 66.667 0.00 0.00 46.30 3.51
4398 4586 2.963371 GGCGAGTTCTCCGACAGT 59.037 61.111 0.00 0.00 34.67 3.55
4399 4587 1.153997 GGCGAGTTCTCCGACAGTC 60.154 63.158 0.00 0.00 34.67 3.51
4400 4588 1.153997 GCGAGTTCTCCGACAGTCC 60.154 63.158 0.00 0.00 0.00 3.85
4401 4589 1.134901 CGAGTTCTCCGACAGTCCG 59.865 63.158 0.00 0.00 0.00 4.79
4402 4590 1.153997 GAGTTCTCCGACAGTCCGC 60.154 63.158 0.00 0.00 0.00 5.54
4405 4593 4.671590 TCTCCGACAGTCCGCCCA 62.672 66.667 0.00 0.00 0.00 5.36
4406 4594 4.436998 CTCCGACAGTCCGCCCAC 62.437 72.222 0.00 0.00 0.00 4.61
4410 4598 4.314440 GACAGTCCGCCCACAGCA 62.314 66.667 0.00 0.00 44.04 4.41
4411 4599 4.320456 ACAGTCCGCCCACAGCAG 62.320 66.667 0.00 0.00 44.04 4.24
4412 4600 4.320456 CAGTCCGCCCACAGCAGT 62.320 66.667 0.00 0.00 44.04 4.40
4413 4601 4.008933 AGTCCGCCCACAGCAGTC 62.009 66.667 0.00 0.00 44.04 3.51
4414 4602 4.314440 GTCCGCCCACAGCAGTCA 62.314 66.667 0.00 0.00 44.04 3.41
4415 4603 3.321648 TCCGCCCACAGCAGTCAT 61.322 61.111 0.00 0.00 44.04 3.06
4419 4607 2.124983 CCCACAGCAGTCATCCCG 60.125 66.667 0.00 0.00 0.00 5.14
4420 4608 2.821366 CCACAGCAGTCATCCCGC 60.821 66.667 0.00 0.00 0.00 6.13
4421 4609 2.821366 CACAGCAGTCATCCCGCC 60.821 66.667 0.00 0.00 0.00 6.13
4422 4610 4.101448 ACAGCAGTCATCCCGCCC 62.101 66.667 0.00 0.00 0.00 6.13
4430 4618 4.704833 CATCCCGCCCGCCCATAG 62.705 72.222 0.00 0.00 0.00 2.23
4439 4627 4.195334 CGCCCATAGCCCTGCCTT 62.195 66.667 0.00 0.00 38.78 4.35
4449 4637 2.845345 CCCTGCCTTTCCCACCTGT 61.845 63.158 0.00 0.00 0.00 4.00
4479 4686 1.741770 CGAGAAGCCCCTTTCACCG 60.742 63.158 0.00 0.00 0.00 4.94
4490 4810 1.909141 CTTTCACCGAGCAGCAGCAG 61.909 60.000 3.17 0.00 45.49 4.24
4551 5001 3.653009 GCACAAGCAGCAGCACGA 61.653 61.111 3.17 0.00 45.49 4.35
4600 5050 2.353839 CCACAAGCAACAGCACGC 60.354 61.111 0.00 0.00 0.00 5.34
4602 5052 3.952675 ACAAGCAACAGCACGCCG 61.953 61.111 0.00 0.00 0.00 6.46
4738 5229 4.993028 AGTGGTAGAGATGGGAGATAGTC 58.007 47.826 0.00 0.00 0.00 2.59
4769 5261 1.856920 TCTTTTCTTTGGGTGGGTCCT 59.143 47.619 0.00 0.00 36.25 3.85
4785 5277 3.069729 GGGTCCTACCTGTATGTGACATC 59.930 52.174 0.00 0.00 38.64 3.06
4790 5282 1.277842 ACCTGTATGTGACATCGGCAA 59.722 47.619 0.00 0.00 37.45 4.52
4791 5283 2.092968 ACCTGTATGTGACATCGGCAAT 60.093 45.455 0.00 0.00 37.45 3.56
4797 5289 0.392998 GTGACATCGGCAATGAGGGT 60.393 55.000 5.42 0.00 38.83 4.34
4807 5299 3.673052 CGGCAATGAGGGTTACAAATGTG 60.673 47.826 0.00 0.00 0.00 3.21
4811 5303 3.222173 TGAGGGTTACAAATGTGCACT 57.778 42.857 19.41 0.00 0.00 4.40
4815 5307 5.009210 TGAGGGTTACAAATGTGCACTTAAC 59.991 40.000 19.41 15.33 0.00 2.01
4833 5337 1.428869 ACAGCTCACTCCTTTGACCT 58.571 50.000 0.00 0.00 0.00 3.85
4834 5338 2.609747 ACAGCTCACTCCTTTGACCTA 58.390 47.619 0.00 0.00 0.00 3.08
4837 5341 2.972713 AGCTCACTCCTTTGACCTAACA 59.027 45.455 0.00 0.00 0.00 2.41
4867 5371 5.824097 GGCACGGAAGGGTATTTTTATAAGA 59.176 40.000 0.00 0.00 36.38 2.10
4872 5376 6.766467 CGGAAGGGTATTTTTATAAGAGCACT 59.234 38.462 0.00 0.00 0.00 4.40
4886 5390 2.370849 AGAGCACTAAACGGAAAAGGGA 59.629 45.455 0.00 0.00 0.00 4.20
4901 5405 5.529060 GGAAAAGGGATATAGTTGAGCACTG 59.471 44.000 0.00 0.00 35.97 3.66
4905 5410 6.067217 AGGGATATAGTTGAGCACTGTTTT 57.933 37.500 0.00 0.00 35.97 2.43
4937 5442 3.502123 AAAGATGAGGTCGGGACAAAA 57.498 42.857 0.75 0.00 0.00 2.44
4938 5443 3.502123 AAGATGAGGTCGGGACAAAAA 57.498 42.857 0.75 0.00 0.00 1.94
4941 5446 5.174037 AGATGAGGTCGGGACAAAAATAA 57.826 39.130 0.75 0.00 0.00 1.40
4942 5447 5.186198 AGATGAGGTCGGGACAAAAATAAG 58.814 41.667 0.75 0.00 0.00 1.73
4953 5458 5.249622 GGGACAAAAATAAGGGGGAAAATGA 59.750 40.000 0.00 0.00 0.00 2.57
4956 5461 7.888021 GGACAAAAATAAGGGGGAAAATGAAAT 59.112 33.333 0.00 0.00 0.00 2.17
4959 5464 9.076781 CAAAAATAAGGGGGAAAATGAAATTGT 57.923 29.630 0.00 0.00 36.10 2.71
4986 5491 7.865889 CCCTTATTTGTTTCCTACTGTGTTTTC 59.134 37.037 0.00 0.00 0.00 2.29
4987 5492 8.410141 CCTTATTTGTTTCCTACTGTGTTTTCA 58.590 33.333 0.00 0.00 0.00 2.69
5045 5550 6.090898 CACTTCATCTTTACACTAGTTTCGGG 59.909 42.308 0.00 0.00 0.00 5.14
5147 5652 2.027100 CCTTTGGGGTCTACTGGACTTC 60.027 54.545 0.00 0.00 43.97 3.01
5159 5664 8.258708 GGTCTACTGGACTTCACAATAGTTATT 58.741 37.037 0.00 0.00 43.97 1.40
5177 5682 5.634859 AGTTATTGCTACATTTTTGCACTGC 59.365 36.000 0.00 0.00 36.37 4.40
5184 5689 3.374745 ACATTTTTGCACTGCTTTCGAG 58.625 40.909 1.98 0.00 0.00 4.04
5218 5723 4.864806 CGCTAGTTTCTGTTGCATCTCTAA 59.135 41.667 0.00 0.00 0.00 2.10
5230 5735 4.759782 TGCATCTCTAAACTAGTTCCAGC 58.240 43.478 8.95 7.27 0.00 4.85
5233 5738 5.651530 CATCTCTAAACTAGTTCCAGCGAA 58.348 41.667 8.95 0.00 0.00 4.70
5263 5768 9.733556 ATGTGTCAATTTAGTATTTGTAGGTGA 57.266 29.630 0.00 0.00 0.00 4.02
5264 5769 9.562408 TGTGTCAATTTAGTATTTGTAGGTGAA 57.438 29.630 0.00 0.00 0.00 3.18
5279 5784 8.500753 TTGTAGGTGAACGCTTATGAAATAAT 57.499 30.769 0.00 0.00 38.29 1.28
5283 5788 7.480810 AGGTGAACGCTTATGAAATAATTTCC 58.519 34.615 0.00 0.00 38.29 3.13
5662 6167 7.464710 CGAAAAGTTCTATGAGATAACTGTGGC 60.465 40.741 0.00 0.00 33.85 5.01
5691 6196 3.433306 TGATTTTTGTCGTCCAGGGAT 57.567 42.857 0.00 0.00 0.00 3.85
5700 6205 2.758979 GTCGTCCAGGGATGTCTAGAAA 59.241 50.000 7.39 0.00 33.21 2.52
5709 6214 5.422331 CAGGGATGTCTAGAAAAGGTCTACA 59.578 44.000 0.00 0.00 37.84 2.74
5821 6326 2.357517 CGCAGCCTTTCTCACCGT 60.358 61.111 0.00 0.00 0.00 4.83
5837 6342 3.009723 CACCGTCATTCTGCAGGTATTT 58.990 45.455 15.13 0.00 33.30 1.40
5839 6344 3.055094 ACCGTCATTCTGCAGGTATTTCT 60.055 43.478 15.13 0.00 32.76 2.52
5843 6348 4.697352 GTCATTCTGCAGGTATTTCTGTGT 59.303 41.667 15.13 0.00 37.12 3.72
5852 6357 5.278957 GCAGGTATTTCTGTGTTTGGTGATT 60.279 40.000 0.00 0.00 37.12 2.57
5870 6375 0.248949 TTTTGGCGTTTTACGGTGGC 60.249 50.000 1.14 0.00 42.82 5.01
5915 6428 3.316308 AGGCCTTAATAATGCAAGCTTCG 59.684 43.478 0.00 0.00 0.00 3.79
5941 6454 6.458592 CGAGCAATTTCGCATCGTTTATATAC 59.541 38.462 0.00 0.00 33.39 1.47
5942 6455 7.421530 AGCAATTTCGCATCGTTTATATACT 57.578 32.000 0.00 0.00 0.00 2.12
5943 6456 7.510630 AGCAATTTCGCATCGTTTATATACTC 58.489 34.615 0.00 0.00 0.00 2.59
5974 6492 1.819208 CCATTTGCAGGATCGGCGA 60.819 57.895 13.87 13.87 0.00 5.54
6123 6773 1.675641 GCAGCCCAAACACGAGGAT 60.676 57.895 0.00 0.00 0.00 3.24
6221 6871 1.515521 CTTCCCCCGTTGTTGTGCTC 61.516 60.000 0.00 0.00 0.00 4.26
6289 6968 5.625311 GCTGTTCTGAAACTTGTTATTTCGG 59.375 40.000 0.00 0.74 41.77 4.30
6358 7037 1.880027 GGTAAGGCAACACCACTTCAG 59.120 52.381 0.00 0.00 43.14 3.02
6363 7042 0.455410 GCAACACCACTTCAGCAACA 59.545 50.000 0.00 0.00 0.00 3.33
6365 7044 2.481795 GCAACACCACTTCAGCAACATT 60.482 45.455 0.00 0.00 0.00 2.71
6367 7046 3.715628 ACACCACTTCAGCAACATTTC 57.284 42.857 0.00 0.00 0.00 2.17
6372 7051 5.005971 CACCACTTCAGCAACATTTCTTTTG 59.994 40.000 0.00 0.00 0.00 2.44
6379 7058 9.132521 CTTCAGCAACATTTCTTTTGGTTATAG 57.867 33.333 0.00 0.00 31.14 1.31
6380 7059 8.402798 TCAGCAACATTTCTTTTGGTTATAGA 57.597 30.769 0.00 0.00 31.14 1.98
6381 7060 8.514594 TCAGCAACATTTCTTTTGGTTATAGAG 58.485 33.333 0.00 0.00 31.14 2.43
6382 7061 8.299570 CAGCAACATTTCTTTTGGTTATAGAGT 58.700 33.333 0.00 0.00 31.14 3.24
6383 7062 9.515226 AGCAACATTTCTTTTGGTTATAGAGTA 57.485 29.630 0.00 0.00 29.16 2.59
6597 7279 2.517959 CTGAAAAGTCAATGCCAGGGA 58.482 47.619 0.00 0.00 31.88 4.20
6762 7445 2.573869 CGCCTCTGTCACGGACAT 59.426 61.111 7.11 0.00 41.94 3.06
6925 7608 3.666253 TCGCGCACCAAGACGAGA 61.666 61.111 8.75 0.00 35.74 4.04
6934 7617 2.359602 AAGACGAGAGGGCGACGA 60.360 61.111 0.00 0.00 34.83 4.20
7156 7853 1.211969 CAACCAGGACGACGACGAT 59.788 57.895 15.32 0.00 42.66 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 102 2.421619 GCCTCACTCACTTCTTCCTTG 58.578 52.381 0.00 0.00 0.00 3.61
100 103 1.001406 CGCCTCACTCACTTCTTCCTT 59.999 52.381 0.00 0.00 0.00 3.36
112 115 0.179089 CTTCTGCTATGCGCCTCACT 60.179 55.000 4.18 0.00 38.05 3.41
122 125 1.759445 ACGGTCATGCTCTTCTGCTAT 59.241 47.619 0.00 0.00 0.00 2.97
188 191 3.435186 GCCCAAGTGCTTCTCCGC 61.435 66.667 0.00 0.00 0.00 5.54
274 278 2.930562 AGAGCTTCCAGCCCCGTT 60.931 61.111 0.00 0.00 43.77 4.44
400 404 1.671054 CCACCATCGTCACACCACC 60.671 63.158 0.00 0.00 0.00 4.61
440 444 4.415332 CGCCGCACTACCTCACGT 62.415 66.667 0.00 0.00 0.00 4.49
474 488 1.897802 TCAACCTTCCGACCTTACCTC 59.102 52.381 0.00 0.00 0.00 3.85
475 489 1.900486 CTCAACCTTCCGACCTTACCT 59.100 52.381 0.00 0.00 0.00 3.08
476 490 1.066358 CCTCAACCTTCCGACCTTACC 60.066 57.143 0.00 0.00 0.00 2.85
477 491 1.897802 TCCTCAACCTTCCGACCTTAC 59.102 52.381 0.00 0.00 0.00 2.34
478 492 2.314071 TCCTCAACCTTCCGACCTTA 57.686 50.000 0.00 0.00 0.00 2.69
479 493 1.348036 CTTCCTCAACCTTCCGACCTT 59.652 52.381 0.00 0.00 0.00 3.50
480 494 0.977395 CTTCCTCAACCTTCCGACCT 59.023 55.000 0.00 0.00 0.00 3.85
481 495 0.036294 CCTTCCTCAACCTTCCGACC 60.036 60.000 0.00 0.00 0.00 4.79
482 496 0.036294 CCCTTCCTCAACCTTCCGAC 60.036 60.000 0.00 0.00 0.00 4.79
483 497 1.838073 GCCCTTCCTCAACCTTCCGA 61.838 60.000 0.00 0.00 0.00 4.55
487 501 1.460699 GTGGCCCTTCCTCAACCTT 59.539 57.895 0.00 0.00 35.26 3.50
504 518 1.961277 CCGCACCTGAGAAAAGCGT 60.961 57.895 0.00 0.00 46.26 5.07
602 622 1.227823 CTGCCACACGGTTCCTTCA 60.228 57.895 0.00 0.00 33.28 3.02
683 703 3.841643 TGCGTCGTTGGGTTTTTAAAAA 58.158 36.364 9.31 9.31 0.00 1.94
684 704 3.498927 TGCGTCGTTGGGTTTTTAAAA 57.501 38.095 0.00 0.00 0.00 1.52
685 705 3.177487 GTTGCGTCGTTGGGTTTTTAAA 58.823 40.909 0.00 0.00 0.00 1.52
686 706 2.163010 TGTTGCGTCGTTGGGTTTTTAA 59.837 40.909 0.00 0.00 0.00 1.52
687 707 1.741706 TGTTGCGTCGTTGGGTTTTTA 59.258 42.857 0.00 0.00 0.00 1.52
688 708 0.526662 TGTTGCGTCGTTGGGTTTTT 59.473 45.000 0.00 0.00 0.00 1.94
689 709 0.526662 TTGTTGCGTCGTTGGGTTTT 59.473 45.000 0.00 0.00 0.00 2.43
690 710 0.526662 TTTGTTGCGTCGTTGGGTTT 59.473 45.000 0.00 0.00 0.00 3.27
691 711 0.099791 CTTTGTTGCGTCGTTGGGTT 59.900 50.000 0.00 0.00 0.00 4.11
692 712 1.725066 CTTTGTTGCGTCGTTGGGT 59.275 52.632 0.00 0.00 0.00 4.51
693 713 1.657181 GCTTTGTTGCGTCGTTGGG 60.657 57.895 0.00 0.00 0.00 4.12
694 714 0.657368 GAGCTTTGTTGCGTCGTTGG 60.657 55.000 0.00 0.00 38.13 3.77
695 715 0.986874 CGAGCTTTGTTGCGTCGTTG 60.987 55.000 0.00 0.00 38.13 4.10
696 716 1.275657 CGAGCTTTGTTGCGTCGTT 59.724 52.632 0.00 0.00 38.13 3.85
697 717 2.928361 CGAGCTTTGTTGCGTCGT 59.072 55.556 0.00 0.00 38.13 4.34
698 718 2.497628 GCGAGCTTTGTTGCGTCG 60.498 61.111 0.00 0.00 38.13 5.12
699 719 2.127232 GGCGAGCTTTGTTGCGTC 60.127 61.111 0.00 0.00 38.13 5.19
700 720 3.660111 GGGCGAGCTTTGTTGCGT 61.660 61.111 0.00 0.00 38.13 5.24
701 721 3.192954 TTGGGCGAGCTTTGTTGCG 62.193 57.895 0.00 0.00 38.13 4.85
702 722 1.661509 GTTGGGCGAGCTTTGTTGC 60.662 57.895 0.00 0.00 0.00 4.17
703 723 1.007387 GGTTGGGCGAGCTTTGTTG 60.007 57.895 0.00 0.00 0.00 3.33
704 724 2.200337 GGGTTGGGCGAGCTTTGTT 61.200 57.895 0.00 0.00 0.00 2.83
705 725 2.597510 GGGTTGGGCGAGCTTTGT 60.598 61.111 0.00 0.00 0.00 2.83
706 726 1.866853 GAAGGGTTGGGCGAGCTTTG 61.867 60.000 0.00 0.00 0.00 2.77
707 727 1.603739 GAAGGGTTGGGCGAGCTTT 60.604 57.895 0.00 0.00 0.00 3.51
708 728 2.034221 GAAGGGTTGGGCGAGCTT 59.966 61.111 0.00 0.00 0.00 3.74
709 729 2.930562 AGAAGGGTTGGGCGAGCT 60.931 61.111 0.00 0.00 0.00 4.09
710 730 2.436824 GAGAAGGGTTGGGCGAGC 60.437 66.667 0.00 0.00 0.00 5.03
711 731 1.601419 TACGAGAAGGGTTGGGCGAG 61.601 60.000 0.00 0.00 0.00 5.03
712 732 1.607178 TACGAGAAGGGTTGGGCGA 60.607 57.895 0.00 0.00 0.00 5.54
713 733 1.447314 GTACGAGAAGGGTTGGGCG 60.447 63.158 0.00 0.00 0.00 6.13
714 734 0.391263 CAGTACGAGAAGGGTTGGGC 60.391 60.000 0.00 0.00 0.00 5.36
715 735 0.249398 CCAGTACGAGAAGGGTTGGG 59.751 60.000 0.00 0.00 0.00 4.12
716 736 1.263356 TCCAGTACGAGAAGGGTTGG 58.737 55.000 0.00 0.00 0.00 3.77
717 737 2.496070 TCATCCAGTACGAGAAGGGTTG 59.504 50.000 0.00 0.00 0.00 3.77
718 738 2.816411 TCATCCAGTACGAGAAGGGTT 58.184 47.619 0.00 0.00 0.00 4.11
719 739 2.526888 TCATCCAGTACGAGAAGGGT 57.473 50.000 0.00 0.00 0.00 4.34
720 740 4.216687 GTCTATCATCCAGTACGAGAAGGG 59.783 50.000 0.00 0.00 0.00 3.95
721 741 4.216687 GGTCTATCATCCAGTACGAGAAGG 59.783 50.000 0.00 0.00 0.00 3.46
722 742 4.822350 TGGTCTATCATCCAGTACGAGAAG 59.178 45.833 0.00 0.00 0.00 2.85
723 743 4.788679 TGGTCTATCATCCAGTACGAGAA 58.211 43.478 0.00 0.00 0.00 2.87
724 744 4.390264 CTGGTCTATCATCCAGTACGAGA 58.610 47.826 0.00 0.00 44.19 4.04
725 745 4.757799 CTGGTCTATCATCCAGTACGAG 57.242 50.000 0.00 0.00 44.19 4.18
759 779 1.244697 AAAGAGCGCGAGACAGAGGA 61.245 55.000 12.10 0.00 0.00 3.71
764 784 4.267690 CACAATATAAAAGAGCGCGAGACA 59.732 41.667 12.10 0.00 0.00 3.41
769 789 5.175673 TCATCTCACAATATAAAAGAGCGCG 59.824 40.000 0.00 0.00 0.00 6.86
770 790 6.422100 TCTCATCTCACAATATAAAAGAGCGC 59.578 38.462 0.00 0.00 0.00 5.92
774 794 9.993454 CTCCATCTCATCTCACAATATAAAAGA 57.007 33.333 0.00 0.00 0.00 2.52
791 811 3.207549 TCCAATCTACTCCCTCCATCTCA 59.792 47.826 0.00 0.00 0.00 3.27
794 814 2.297597 CGTCCAATCTACTCCCTCCATC 59.702 54.545 0.00 0.00 0.00 3.51
795 815 2.320781 CGTCCAATCTACTCCCTCCAT 58.679 52.381 0.00 0.00 0.00 3.41
796 816 1.688311 CCGTCCAATCTACTCCCTCCA 60.688 57.143 0.00 0.00 0.00 3.86
797 817 1.041437 CCGTCCAATCTACTCCCTCC 58.959 60.000 0.00 0.00 0.00 4.30
798 818 2.068834 TCCGTCCAATCTACTCCCTC 57.931 55.000 0.00 0.00 0.00 4.30
874 905 5.754890 TCTTTTTAGTCAACCGGTGTTACTC 59.245 40.000 8.52 0.00 32.09 2.59
905 936 2.639286 CTGCACGACCAGCAAACC 59.361 61.111 0.00 0.00 42.17 3.27
949 980 2.797156 GGCGTGACACTGATAGCATAAG 59.203 50.000 3.68 0.00 0.00 1.73
971 1002 3.484547 CGTAAGCACGCGGGGTTC 61.485 66.667 31.12 19.28 42.05 3.62
983 1014 4.250570 TCTCGTAAGTCGTAAGCGTAAG 57.749 45.455 0.00 0.00 40.80 2.34
984 1015 4.661993 TTCTCGTAAGTCGTAAGCGTAA 57.338 40.909 0.00 0.00 40.80 3.18
985 1016 4.329801 TCATTCTCGTAAGTCGTAAGCGTA 59.670 41.667 0.00 0.00 40.80 4.42
986 1017 3.125829 TCATTCTCGTAAGTCGTAAGCGT 59.874 43.478 0.00 0.00 40.80 5.07
987 1018 3.677601 TCATTCTCGTAAGTCGTAAGCG 58.322 45.455 0.00 0.00 40.80 4.68
988 1019 6.403615 CATTTCATTCTCGTAAGTCGTAAGC 58.596 40.000 0.00 0.00 40.80 3.09
989 1020 6.403615 GCATTTCATTCTCGTAAGTCGTAAG 58.596 40.000 0.00 0.00 40.80 2.34
990 1021 5.004061 CGCATTTCATTCTCGTAAGTCGTAA 59.996 40.000 0.00 0.00 40.80 3.18
991 1022 4.497966 CGCATTTCATTCTCGTAAGTCGTA 59.502 41.667 0.00 0.00 40.80 3.43
992 1023 3.303495 CGCATTTCATTCTCGTAAGTCGT 59.697 43.478 0.00 0.00 40.80 4.34
993 1024 3.301835 CCGCATTTCATTCTCGTAAGTCG 60.302 47.826 0.00 0.00 41.41 4.18
994 1025 3.617263 ACCGCATTTCATTCTCGTAAGTC 59.383 43.478 0.00 0.00 39.48 3.01
995 1026 3.596214 ACCGCATTTCATTCTCGTAAGT 58.404 40.909 0.00 0.00 39.48 2.24
1017 1048 4.442706 GAAGGATCCTTTCTTGTCGCATA 58.557 43.478 27.68 0.00 36.26 3.14
1281 1312 3.334751 CGCGCACTTGTTGGTCGA 61.335 61.111 8.75 0.00 0.00 4.20
1325 1356 1.073923 ACTTTGAGGGCCTCGACAAAT 59.926 47.619 27.58 8.45 33.01 2.32
1331 1362 1.446272 GACGACTTTGAGGGCCTCG 60.446 63.158 27.58 18.05 32.35 4.63
1541 1572 0.603065 CCTCGTCCACATGAGTCACA 59.397 55.000 0.00 0.00 34.18 3.58
1549 1580 3.075005 CCGTCCCCTCGTCCACAT 61.075 66.667 0.00 0.00 0.00 3.21
1570 1601 4.415332 GTTGGCGCGAGGACGAGA 62.415 66.667 12.10 0.00 41.48 4.04
1583 1614 3.123804 CCCTACGATTTCGATGAGTTGG 58.876 50.000 7.01 0.00 43.02 3.77
1619 1650 0.524414 GGGCCACGGTTGTTGATAAC 59.476 55.000 4.39 0.00 0.00 1.89
1629 1660 3.647771 GGAAAGGAGGGCCACGGT 61.648 66.667 6.18 0.00 36.29 4.83
1631 1662 1.377333 GAAGGAAAGGAGGGCCACG 60.377 63.158 6.18 0.00 36.29 4.94
1652 1683 6.106003 TGAAAGATCGCAGTTACATGTACAT 58.894 36.000 4.68 1.41 0.00 2.29
1763 1799 5.403881 CCCAGTAAGGTTGTGAACACACAA 61.404 45.833 10.98 10.98 41.71 3.33
1764 1800 3.275143 CCAGTAAGGTTGTGAACACACA 58.725 45.455 7.16 0.00 41.67 3.72
1765 1801 2.616842 CCCAGTAAGGTTGTGAACACAC 59.383 50.000 7.16 3.62 36.26 3.82
1766 1802 2.240160 ACCCAGTAAGGTTGTGAACACA 59.760 45.455 3.39 3.39 36.44 3.72
1767 1803 2.927028 ACCCAGTAAGGTTGTGAACAC 58.073 47.619 0.00 0.00 36.44 3.32
1776 1812 1.875157 GCGAACGAAACCCAGTAAGGT 60.875 52.381 0.00 0.00 44.00 3.50
1777 1813 0.794473 GCGAACGAAACCCAGTAAGG 59.206 55.000 0.00 0.00 37.03 2.69
1778 1814 1.459592 CAGCGAACGAAACCCAGTAAG 59.540 52.381 0.00 0.00 0.00 2.34
1779 1815 1.504359 CAGCGAACGAAACCCAGTAA 58.496 50.000 0.00 0.00 0.00 2.24
1780 1816 0.947180 GCAGCGAACGAAACCCAGTA 60.947 55.000 0.00 0.00 0.00 2.74
1781 1817 2.251642 GCAGCGAACGAAACCCAGT 61.252 57.895 0.00 0.00 0.00 4.00
1782 1818 1.781025 TTGCAGCGAACGAAACCCAG 61.781 55.000 0.00 0.00 0.00 4.45
1783 1819 1.377366 TTTGCAGCGAACGAAACCCA 61.377 50.000 0.00 0.00 0.00 4.51
1784 1820 0.248702 TTTTGCAGCGAACGAAACCC 60.249 50.000 0.00 0.00 0.00 4.11
1785 1821 1.551145 TTTTTGCAGCGAACGAAACC 58.449 45.000 0.00 0.00 0.00 3.27
1804 1840 7.094205 ACGTCATCTGATTTGAAGGCTATTTTT 60.094 33.333 0.00 0.00 0.00 1.94
1805 1841 6.375455 ACGTCATCTGATTTGAAGGCTATTTT 59.625 34.615 0.00 0.00 0.00 1.82
1806 1842 5.882557 ACGTCATCTGATTTGAAGGCTATTT 59.117 36.000 0.00 0.00 0.00 1.40
1807 1843 5.431765 ACGTCATCTGATTTGAAGGCTATT 58.568 37.500 0.00 0.00 0.00 1.73
1808 1844 5.028549 ACGTCATCTGATTTGAAGGCTAT 57.971 39.130 0.00 0.00 0.00 2.97
1809 1845 4.081697 TGACGTCATCTGATTTGAAGGCTA 60.082 41.667 15.76 0.00 32.57 3.93
1810 1846 3.265791 GACGTCATCTGATTTGAAGGCT 58.734 45.455 11.55 0.00 29.24 4.58
1811 1847 3.002791 TGACGTCATCTGATTTGAAGGC 58.997 45.455 15.76 0.00 32.05 4.35
1812 1848 5.352293 TGATTGACGTCATCTGATTTGAAGG 59.648 40.000 20.80 0.00 0.00 3.46
1813 1849 6.413018 TGATTGACGTCATCTGATTTGAAG 57.587 37.500 20.80 0.00 0.00 3.02
1814 1850 6.990341 ATGATTGACGTCATCTGATTTGAA 57.010 33.333 20.80 0.00 33.69 2.69
1815 1851 6.990341 AATGATTGACGTCATCTGATTTGA 57.010 33.333 20.80 0.45 37.85 2.69
1816 1852 9.558648 TTTAAATGATTGACGTCATCTGATTTG 57.441 29.630 20.80 0.00 37.85 2.32
1818 1854 9.778993 CTTTTAAATGATTGACGTCATCTGATT 57.221 29.630 20.80 12.61 37.85 2.57
1819 1855 8.950210 ACTTTTAAATGATTGACGTCATCTGAT 58.050 29.630 20.80 9.83 37.85 2.90
1820 1856 8.322906 ACTTTTAAATGATTGACGTCATCTGA 57.677 30.769 20.80 4.31 37.85 3.27
1821 1857 9.694520 CTACTTTTAAATGATTGACGTCATCTG 57.305 33.333 20.80 2.53 37.85 2.90
1827 1863 9.458374 CAAAACCTACTTTTAAATGATTGACGT 57.542 29.630 8.00 0.00 30.39 4.34
1828 1864 9.672086 TCAAAACCTACTTTTAAATGATTGACG 57.328 29.630 8.00 0.00 30.39 4.35
1909 1955 2.484889 CCTAGCTAAGGTTTCATCGCC 58.515 52.381 0.00 0.00 40.94 5.54
1929 1975 0.946221 CCAGTGGTGAAGACGTCTGC 60.946 60.000 20.85 18.99 0.00 4.26
1980 2027 1.138859 TCTATCCTTGATGGCCACACG 59.861 52.381 8.16 6.20 35.26 4.49
1987 2034 0.322975 CCCCGCTCTATCCTTGATGG 59.677 60.000 0.00 0.00 37.10 3.51
2050 2167 0.245539 TTGAAAGGTACGAGGGCGAG 59.754 55.000 0.00 0.00 41.64 5.03
2052 2169 1.359459 GCTTGAAAGGTACGAGGGCG 61.359 60.000 0.00 0.00 44.79 6.13
2053 2170 1.359459 CGCTTGAAAGGTACGAGGGC 61.359 60.000 0.00 0.00 0.00 5.19
2059 2176 0.240145 GGTTGGCGCTTGAAAGGTAC 59.760 55.000 7.64 0.00 0.00 3.34
2076 2193 1.722034 ATGGATCATACTCGGCAGGT 58.278 50.000 0.00 0.00 0.00 4.00
2104 2221 1.153168 CAGACCCCCGCGATCAAAT 60.153 57.895 8.23 0.00 0.00 2.32
2109 2226 4.778143 GCAACAGACCCCCGCGAT 62.778 66.667 8.23 0.00 0.00 4.58
2120 2237 2.859981 GCACCCCAACCAGCAACAG 61.860 63.158 0.00 0.00 0.00 3.16
2143 2261 2.638325 TCCCTTGGATTTAGTCACCCA 58.362 47.619 0.00 0.00 0.00 4.51
2149 2267 6.322931 ACCAAAGATTTCCCTTGGATTTAGT 58.677 36.000 13.30 0.00 0.00 2.24
2158 2276 3.763057 ACGCTAACCAAAGATTTCCCTT 58.237 40.909 0.00 0.00 0.00 3.95
2161 2279 3.242518 GCAACGCTAACCAAAGATTTCC 58.757 45.455 0.00 0.00 0.00 3.13
2187 2305 3.490348 CCCAGGAGTTGTCAAGATTGTT 58.510 45.455 0.00 0.00 0.00 2.83
2199 2317 1.152312 AGACGACACCCCAGGAGTT 60.152 57.895 0.00 0.00 0.00 3.01
2205 2323 2.283676 GAGGGAGACGACACCCCA 60.284 66.667 15.96 0.00 45.96 4.96
2268 2387 0.663269 TATAACGCATGCCGAGCTCG 60.663 55.000 29.06 29.06 41.02 5.03
2269 2388 1.192534 GTTATAACGCATGCCGAGCTC 59.807 52.381 13.15 2.73 41.02 4.09
2270 2389 1.217882 GTTATAACGCATGCCGAGCT 58.782 50.000 13.15 0.00 41.02 4.09
2271 2390 0.934496 TGTTATAACGCATGCCGAGC 59.066 50.000 13.15 0.00 41.02 5.03
2272 2391 3.666883 TTTGTTATAACGCATGCCGAG 57.333 42.857 13.15 0.00 41.02 4.63
2273 2392 3.242903 CCATTTGTTATAACGCATGCCGA 60.243 43.478 13.15 0.00 41.02 5.54
2274 2393 3.042189 CCATTTGTTATAACGCATGCCG 58.958 45.455 13.15 10.04 44.21 5.69
2275 2394 4.300189 TCCATTTGTTATAACGCATGCC 57.700 40.909 13.15 0.00 0.00 4.40
2276 2395 5.518812 TCATCCATTTGTTATAACGCATGC 58.481 37.500 7.91 7.91 0.00 4.06
2277 2396 7.306167 GCTTTCATCCATTTGTTATAACGCATG 60.306 37.037 10.92 13.54 0.00 4.06
2278 2397 6.697019 GCTTTCATCCATTTGTTATAACGCAT 59.303 34.615 10.92 2.71 0.00 4.73
2279 2398 6.033341 GCTTTCATCCATTTGTTATAACGCA 58.967 36.000 10.92 0.33 0.00 5.24
2280 2399 5.458779 GGCTTTCATCCATTTGTTATAACGC 59.541 40.000 10.92 3.44 0.00 4.84
2281 2400 6.795399 AGGCTTTCATCCATTTGTTATAACG 58.205 36.000 10.92 0.00 0.00 3.18
2285 2404 9.205513 AGATAAAGGCTTTCATCCATTTGTTAT 57.794 29.630 17.13 0.00 0.00 1.89
2286 2405 8.469200 CAGATAAAGGCTTTCATCCATTTGTTA 58.531 33.333 17.13 0.00 0.00 2.41
2287 2406 7.038799 ACAGATAAAGGCTTTCATCCATTTGTT 60.039 33.333 17.13 0.00 0.00 2.83
2288 2407 6.438425 ACAGATAAAGGCTTTCATCCATTTGT 59.562 34.615 17.13 12.10 0.00 2.83
2289 2408 6.870769 ACAGATAAAGGCTTTCATCCATTTG 58.129 36.000 17.13 11.49 0.00 2.32
2290 2409 7.486407 AACAGATAAAGGCTTTCATCCATTT 57.514 32.000 17.13 8.25 0.00 2.32
2291 2410 8.636213 CATAACAGATAAAGGCTTTCATCCATT 58.364 33.333 17.13 14.69 0.00 3.16
2292 2411 7.232127 CCATAACAGATAAAGGCTTTCATCCAT 59.768 37.037 17.13 3.63 0.00 3.41
2293 2412 6.547141 CCATAACAGATAAAGGCTTTCATCCA 59.453 38.462 17.13 0.00 0.00 3.41
2294 2413 6.772716 TCCATAACAGATAAAGGCTTTCATCC 59.227 38.462 17.13 4.41 0.00 3.51
2295 2414 7.500559 ACTCCATAACAGATAAAGGCTTTCATC 59.499 37.037 17.13 16.13 0.00 2.92
2296 2415 7.284034 CACTCCATAACAGATAAAGGCTTTCAT 59.716 37.037 17.13 8.53 0.00 2.57
2304 2423 6.878923 TGTTGTCCACTCCATAACAGATAAAG 59.121 38.462 0.00 0.00 0.00 1.85
2339 2458 2.224793 ACAAGGCCTCCAAGAAGGTTAC 60.225 50.000 5.23 0.00 38.79 2.50
2341 2460 0.853530 ACAAGGCCTCCAAGAAGGTT 59.146 50.000 5.23 0.00 38.79 3.50
2356 2475 1.425448 ACCCCTCTCTCCCAAAACAAG 59.575 52.381 0.00 0.00 0.00 3.16
2358 2477 1.064825 GACCCCTCTCTCCCAAAACA 58.935 55.000 0.00 0.00 0.00 2.83
2359 2478 1.363246 AGACCCCTCTCTCCCAAAAC 58.637 55.000 0.00 0.00 0.00 2.43
2383 2502 2.517959 CATCAACCACACCACCTTGAT 58.482 47.619 0.00 0.00 34.37 2.57
2428 2547 6.654050 CATGACGACATGCAAGACACCTTG 62.654 50.000 14.59 0.00 45.51 3.61
2429 2548 1.202639 TGACGACATGCAAGACACCTT 60.203 47.619 0.00 0.00 0.00 3.50
2430 2549 0.392706 TGACGACATGCAAGACACCT 59.607 50.000 0.00 0.00 0.00 4.00
2431 2550 1.129251 CATGACGACATGCAAGACACC 59.871 52.381 14.59 0.00 45.51 4.16
2441 2567 0.036388 AGCCGGAAACATGACGACAT 60.036 50.000 5.05 0.00 37.19 3.06
2476 2602 0.670546 AACCGAGCATGAACGACCAG 60.671 55.000 12.25 0.63 0.00 4.00
2486 2612 3.009723 CAAGACCATACAAACCGAGCAT 58.990 45.455 0.00 0.00 0.00 3.79
2499 2625 2.125512 GCCGACGAGCAAGACCAT 60.126 61.111 0.00 0.00 0.00 3.55
2528 2654 2.037381 CCCCTCCTCGCCTAGATTTTAC 59.963 54.545 0.00 0.00 0.00 2.01
2537 2663 2.203714 GCTATCCCCTCCTCGCCT 60.204 66.667 0.00 0.00 0.00 5.52
2558 2684 3.411517 CTACAGCTGGGGGTGGGG 61.412 72.222 19.93 0.00 44.34 4.96
2559 2685 4.115199 GCTACAGCTGGGGGTGGG 62.115 72.222 19.93 0.90 44.34 4.61
2560 2686 2.905996 TTGCTACAGCTGGGGGTGG 61.906 63.158 19.93 0.00 44.34 4.61
2561 2687 1.675641 GTTGCTACAGCTGGGGGTG 60.676 63.158 19.93 4.10 45.40 4.61
2562 2688 1.500783 ATGTTGCTACAGCTGGGGGT 61.501 55.000 19.93 0.00 42.66 4.95
2587 2713 2.006888 GACACCATGTTCATACCACCG 58.993 52.381 0.00 0.00 0.00 4.94
2591 2717 4.060038 AGATCGACACCATGTTCATACC 57.940 45.455 0.00 0.00 0.00 2.73
2613 2739 3.316588 ACGAGAGATATTCGAGTGTGCAT 59.683 43.478 2.42 0.00 40.36 3.96
2647 2773 2.689471 GCACAATGGATATGAGTTGCCA 59.311 45.455 0.00 0.00 34.45 4.92
2649 2775 2.954318 AGGCACAATGGATATGAGTTGC 59.046 45.455 0.00 0.00 0.00 4.17
2700 2826 3.437213 TCTCCACCCACGAAGAGAAATA 58.563 45.455 0.00 0.00 32.58 1.40
2701 2827 2.234908 CTCTCCACCCACGAAGAGAAAT 59.765 50.000 0.00 0.00 37.97 2.17
2720 2846 2.423446 CCCCACTATGCCGAGCTC 59.577 66.667 2.73 2.73 0.00 4.09
2721 2847 2.365635 ACCCCACTATGCCGAGCT 60.366 61.111 0.00 0.00 0.00 4.09
2722 2848 2.203070 CACCCCACTATGCCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
2723 2849 1.910580 AACCACCCCACTATGCCGAG 61.911 60.000 0.00 0.00 0.00 4.63
2724 2850 0.618107 TAACCACCCCACTATGCCGA 60.618 55.000 0.00 0.00 0.00 5.54
2725 2851 0.179056 CTAACCACCCCACTATGCCG 60.179 60.000 0.00 0.00 0.00 5.69
2727 2853 0.465642 GCCTAACCACCCCACTATGC 60.466 60.000 0.00 0.00 0.00 3.14
2742 2899 2.248248 CCATGGGAGATTCGTAGCCTA 58.752 52.381 2.85 0.00 0.00 3.93
2749 2906 0.179045 GGACCACCATGGGAGATTCG 60.179 60.000 18.09 0.00 43.37 3.34
2806 2967 4.459089 GAGACCCCTGCCGCTCAC 62.459 72.222 0.00 0.00 0.00 3.51
2822 2984 1.003580 GCCTGTTCCACATCTGAAGGA 59.996 52.381 0.00 0.00 0.00 3.36
2824 2986 2.082231 CAGCCTGTTCCACATCTGAAG 58.918 52.381 0.00 0.00 33.35 3.02
2852 3014 1.101635 TCCGCGAGAGGTGAATCGAT 61.102 55.000 8.23 0.00 41.40 3.59
2867 3029 1.949525 ACACATCCATATTTGCTCCGC 59.050 47.619 0.00 0.00 0.00 5.54
2983 3145 7.173032 GGGAAAAGTGAAAATAAGAGAGGGTA 58.827 38.462 0.00 0.00 0.00 3.69
3007 3171 2.101249 ACCATGAACAACAAGCAAGTGG 59.899 45.455 0.00 0.00 0.00 4.00
3008 3172 3.117794 CACCATGAACAACAAGCAAGTG 58.882 45.455 0.00 0.00 0.00 3.16
3009 3173 2.481795 GCACCATGAACAACAAGCAAGT 60.482 45.455 0.00 0.00 0.00 3.16
3026 3190 6.599638 AGTTGATGGAAGAACTTATAAGCACC 59.400 38.462 12.54 9.10 0.00 5.01
3027 3191 7.334421 TGAGTTGATGGAAGAACTTATAAGCAC 59.666 37.037 12.54 6.86 32.47 4.40
3040 3204 7.173907 ACAAGAAGTACAATGAGTTGATGGAAG 59.826 37.037 0.00 0.00 38.71 3.46
3044 3208 9.764870 CATAACAAGAAGTACAATGAGTTGATG 57.235 33.333 0.00 0.00 38.71 3.07
3098 3262 8.713971 TCAGAACCTATATTTAGATGAAAGGCA 58.286 33.333 0.00 0.00 0.00 4.75
3142 3307 7.365741 ACGACGACCGATATAATGATTAAAGT 58.634 34.615 0.00 0.00 41.76 2.66
3149 3314 4.035441 TGTCAACGACGACCGATATAATGA 59.965 41.667 0.00 0.00 41.76 2.57
3150 3315 4.284485 TGTCAACGACGACCGATATAATG 58.716 43.478 0.00 0.00 41.76 1.90
3151 3316 4.556942 TGTCAACGACGACCGATATAAT 57.443 40.909 0.00 0.00 41.76 1.28
3152 3317 4.201940 ACATGTCAACGACGACCGATATAA 60.202 41.667 0.00 0.00 41.76 0.98
3153 3318 3.313249 ACATGTCAACGACGACCGATATA 59.687 43.478 0.00 0.00 41.76 0.86
3154 3319 2.098607 ACATGTCAACGACGACCGATAT 59.901 45.455 0.00 0.00 41.76 1.63
3155 3320 1.469703 ACATGTCAACGACGACCGATA 59.530 47.619 0.00 0.00 41.76 2.92
3156 3321 0.242825 ACATGTCAACGACGACCGAT 59.757 50.000 0.00 0.00 41.76 4.18
3157 3322 0.662077 CACATGTCAACGACGACCGA 60.662 55.000 0.00 0.00 41.76 4.69
3158 3323 1.772882 CACATGTCAACGACGACCG 59.227 57.895 0.00 0.00 45.44 4.79
3159 3324 1.218875 TGCACATGTCAACGACGACC 61.219 55.000 0.00 0.00 34.95 4.79
3160 3325 0.161658 CTGCACATGTCAACGACGAC 59.838 55.000 0.00 0.00 34.95 4.34
3167 3332 1.902918 GTGGGGCTGCACATGTCAA 60.903 57.895 3.46 0.00 0.00 3.18
3228 3394 2.092753 TCACCAGATCAGGATCCAAAGC 60.093 50.000 15.82 3.84 38.58 3.51
3249 3415 3.197983 CCTAGTCCGAGAAATCCCAAAGT 59.802 47.826 0.00 0.00 0.00 2.66
3260 3426 2.442272 GCCTGGCCTAGTCCGAGA 60.442 66.667 7.66 0.00 0.00 4.04
3285 3452 3.063704 CATGGGCAAGCCGAGCAA 61.064 61.111 4.80 0.00 36.85 3.91
3434 3602 3.762407 TCAAGAAAGGGAACGATGTCA 57.238 42.857 0.00 0.00 0.00 3.58
3513 3683 7.792364 TTAGAGGAGAAGACCAAATCAGTAA 57.208 36.000 0.00 0.00 0.00 2.24
3515 3685 6.882768 ATTAGAGGAGAAGACCAAATCAGT 57.117 37.500 0.00 0.00 0.00 3.41
3528 3698 6.839657 CCTACCAAACCTAGAATTAGAGGAGA 59.160 42.308 11.28 0.00 36.61 3.71
3537 3707 6.657966 GCAACTAAACCTACCAAACCTAGAAT 59.342 38.462 0.00 0.00 0.00 2.40
3540 3710 4.390909 CGCAACTAAACCTACCAAACCTAG 59.609 45.833 0.00 0.00 0.00 3.02
3551 3721 0.109723 TGAAGGGCGCAACTAAACCT 59.890 50.000 10.83 0.45 0.00 3.50
3618 3788 3.696051 ACATGAACGCAAGAAGGCATAAT 59.304 39.130 0.00 0.00 43.62 1.28
3805 3975 5.445964 AGGGAGAAGCAAACTTGAAAACTA 58.554 37.500 0.00 0.00 35.82 2.24
3816 3986 6.869206 ACTACTGTATAAGGGAGAAGCAAA 57.131 37.500 0.00 0.00 0.00 3.68
3868 4041 5.733676 ACTTTGAAAGCACACCAGATTTTT 58.266 33.333 4.57 0.00 0.00 1.94
3871 4044 6.040842 ACATAACTTTGAAAGCACACCAGATT 59.959 34.615 4.57 0.00 0.00 2.40
3872 4045 5.536161 ACATAACTTTGAAAGCACACCAGAT 59.464 36.000 4.57 0.00 0.00 2.90
3886 4063 7.376866 CAGTGAAAACTAGCACACATAACTTTG 59.623 37.037 0.00 0.00 37.48 2.77
3888 4065 6.542370 ACAGTGAAAACTAGCACACATAACTT 59.458 34.615 0.00 0.00 37.48 2.66
3902 4079 5.012148 AGCTAGGATGTACACAGTGAAAACT 59.988 40.000 7.81 0.43 0.00 2.66
3908 4085 5.521906 ACATAGCTAGGATGTACACAGTG 57.478 43.478 13.23 0.00 35.75 3.66
3936 4113 5.239744 ACAAACACAAATAGCATACAACCGA 59.760 36.000 0.00 0.00 0.00 4.69
3992 4170 8.055279 ACATACATTTTTCGACAAAGGATGAT 57.945 30.769 14.90 3.46 0.00 2.45
4033 4217 7.094506 CCCTACAAATAAACACTAGGAACCAAC 60.095 40.741 0.00 0.00 0.00 3.77
4072 4256 3.244318 GGTCGGGACAAAGTTAGAGGAAA 60.244 47.826 0.75 0.00 0.00 3.13
4073 4257 2.301009 GGTCGGGACAAAGTTAGAGGAA 59.699 50.000 0.75 0.00 0.00 3.36
4074 4258 1.897802 GGTCGGGACAAAGTTAGAGGA 59.102 52.381 0.75 0.00 0.00 3.71
4077 4261 2.600790 TGAGGTCGGGACAAAGTTAGA 58.399 47.619 0.75 0.00 0.00 2.10
4116 4301 4.227197 AGAGGGGTATAGTTGATCACTGG 58.773 47.826 0.00 0.00 35.97 4.00
4171 4356 1.083489 TGATCGGACGAAAATGGCAC 58.917 50.000 0.00 0.00 0.00 5.01
4176 4361 1.743394 GGCCTTTGATCGGACGAAAAT 59.257 47.619 0.00 0.00 0.00 1.82
4180 4365 0.323629 AAAGGCCTTTGATCGGACGA 59.676 50.000 29.91 0.00 33.64 4.20
4211 4396 5.240844 GGGGTACAAATGTCATATAACAGCC 59.759 44.000 0.00 0.00 31.50 4.85
4220 4405 1.559682 AGCGAGGGGTACAAATGTCAT 59.440 47.619 0.00 0.00 0.00 3.06
4294 4480 7.073208 TGTGTAATTGGTAGAGATGGGAGATA 58.927 38.462 0.00 0.00 0.00 1.98
4297 4483 5.614324 TGTGTAATTGGTAGAGATGGGAG 57.386 43.478 0.00 0.00 0.00 4.30
4305 4491 2.092103 GGGCCCATGTGTAATTGGTAGA 60.092 50.000 19.95 0.00 0.00 2.59
4312 4498 1.309688 GGTGGGGCCCATGTGTAAT 59.690 57.895 31.48 0.00 35.28 1.89
4350 4536 1.559682 AGGAGAGAGAGAGAGCGAGTT 59.440 52.381 0.00 0.00 0.00 3.01
4352 4538 1.414181 AGAGGAGAGAGAGAGAGCGAG 59.586 57.143 0.00 0.00 0.00 5.03
4353 4539 1.496060 AGAGGAGAGAGAGAGAGCGA 58.504 55.000 0.00 0.00 0.00 4.93
4354 4540 2.213499 GAAGAGGAGAGAGAGAGAGCG 58.787 57.143 0.00 0.00 0.00 5.03
4355 4541 3.281727 TGAAGAGGAGAGAGAGAGAGC 57.718 52.381 0.00 0.00 0.00 4.09
4356 4542 5.301835 AGATGAAGAGGAGAGAGAGAGAG 57.698 47.826 0.00 0.00 0.00 3.20
4387 4575 3.379445 GGGCGGACTGTCGGAGAA 61.379 66.667 18.16 0.00 39.69 2.87
4400 4588 2.821366 GGATGACTGCTGTGGGCG 60.821 66.667 0.00 0.00 45.43 6.13
4401 4589 2.439156 GGGATGACTGCTGTGGGC 60.439 66.667 0.00 0.00 42.22 5.36
4402 4590 2.124983 CGGGATGACTGCTGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
4413 4601 4.704833 CTATGGGCGGGCGGGATG 62.705 72.222 0.00 0.00 0.00 3.51
4422 4610 3.721370 AAAGGCAGGGCTATGGGCG 62.721 63.158 0.00 0.00 42.94 6.13
4423 4611 1.829970 GAAAGGCAGGGCTATGGGC 60.830 63.158 0.00 0.00 40.90 5.36
4425 4613 1.152673 GGGAAAGGCAGGGCTATGG 60.153 63.158 0.00 0.00 0.00 2.74
4426 4614 0.753111 GTGGGAAAGGCAGGGCTATG 60.753 60.000 0.00 0.00 0.00 2.23
4427 4615 1.615262 GTGGGAAAGGCAGGGCTAT 59.385 57.895 0.00 0.00 0.00 2.97
4428 4616 2.612493 GGTGGGAAAGGCAGGGCTA 61.612 63.158 0.00 0.00 0.00 3.93
4429 4617 3.984732 GGTGGGAAAGGCAGGGCT 61.985 66.667 0.00 0.00 0.00 5.19
4430 4618 3.984732 AGGTGGGAAAGGCAGGGC 61.985 66.667 0.00 0.00 0.00 5.19
4435 4623 1.378646 GCCTACAGGTGGGAAAGGC 60.379 63.158 5.96 0.13 45.37 4.35
4437 4625 0.678048 GCTGCCTACAGGTGGGAAAG 60.678 60.000 5.96 3.65 44.63 2.62
4439 4627 2.602676 GGCTGCCTACAGGTGGGAA 61.603 63.158 12.43 0.00 44.63 3.97
4536 4986 1.364626 GCTATCGTGCTGCTGCTTGT 61.365 55.000 17.00 3.28 40.48 3.16
4565 5015 2.049063 CCGCCGCTACCTGCTATC 60.049 66.667 0.00 0.00 40.11 2.08
4566 5016 4.301027 GCCGCCGCTACCTGCTAT 62.301 66.667 0.00 0.00 40.11 2.97
4680 5171 7.462590 CCCCACCCCAAAGAAAATAAATAAAA 58.537 34.615 0.00 0.00 0.00 1.52
4681 5172 6.522631 GCCCCACCCCAAAGAAAATAAATAAA 60.523 38.462 0.00 0.00 0.00 1.40
4682 5173 5.045505 GCCCCACCCCAAAGAAAATAAATAA 60.046 40.000 0.00 0.00 0.00 1.40
4683 5174 4.471747 GCCCCACCCCAAAGAAAATAAATA 59.528 41.667 0.00 0.00 0.00 1.40
4690 5181 2.202899 GGCCCCACCCCAAAGAAA 59.797 61.111 0.00 0.00 0.00 2.52
4699 5190 1.379843 CTTACACATGGGCCCCACC 60.380 63.158 22.27 0.00 35.80 4.61
4700 5191 0.965363 CACTTACACATGGGCCCCAC 60.965 60.000 22.27 0.00 35.80 4.61
4701 5192 1.382240 CACTTACACATGGGCCCCA 59.618 57.895 22.27 4.05 38.19 4.96
4769 5261 2.104170 TGCCGATGTCACATACAGGTA 58.896 47.619 0.00 0.00 42.70 3.08
4785 5277 2.491693 ACATTTGTAACCCTCATTGCCG 59.508 45.455 0.00 0.00 0.00 5.69
4790 5282 3.766545 AGTGCACATTTGTAACCCTCAT 58.233 40.909 21.04 0.00 0.00 2.90
4791 5283 3.222173 AGTGCACATTTGTAACCCTCA 57.778 42.857 21.04 0.00 0.00 3.86
4797 5289 5.298026 TGAGCTGTTAAGTGCACATTTGTAA 59.702 36.000 21.04 6.27 0.00 2.41
4807 5299 2.464157 AGGAGTGAGCTGTTAAGTGC 57.536 50.000 0.00 0.00 0.00 4.40
4811 5303 3.740115 GGTCAAAGGAGTGAGCTGTTAA 58.260 45.455 0.00 0.00 41.72 2.01
4833 5337 1.504359 CTTCCGTGCCGTTTCTGTTA 58.496 50.000 0.00 0.00 0.00 2.41
4834 5338 1.164041 CCTTCCGTGCCGTTTCTGTT 61.164 55.000 0.00 0.00 0.00 3.16
4837 5341 1.474332 TACCCTTCCGTGCCGTTTCT 61.474 55.000 0.00 0.00 0.00 2.52
4861 5365 6.070653 TCCCTTTTCCGTTTAGTGCTCTTATA 60.071 38.462 0.00 0.00 0.00 0.98
4867 5371 2.943036 TCCCTTTTCCGTTTAGTGCT 57.057 45.000 0.00 0.00 0.00 4.40
4872 5376 6.764560 GCTCAACTATATCCCTTTTCCGTTTA 59.235 38.462 0.00 0.00 0.00 2.01
4881 5385 5.700402 AACAGTGCTCAACTATATCCCTT 57.300 39.130 0.00 0.00 36.83 3.95
4905 5410 7.277396 CCGACCTCATCTTTACCCTTAATAAA 58.723 38.462 0.00 0.00 0.00 1.40
4912 5417 1.007963 TCCCGACCTCATCTTTACCCT 59.992 52.381 0.00 0.00 0.00 4.34
4937 5442 6.957631 GGACAATTTCATTTTCCCCCTTATT 58.042 36.000 0.00 0.00 33.90 1.40
4938 5443 6.560003 GGACAATTTCATTTTCCCCCTTAT 57.440 37.500 0.00 0.00 33.90 1.73
4953 5458 8.585018 CAGTAGGAAACAAATAAGGGACAATTT 58.415 33.333 0.00 0.00 0.00 1.82
4956 5461 6.488683 CACAGTAGGAAACAAATAAGGGACAA 59.511 38.462 0.00 0.00 0.00 3.18
4959 5464 6.195600 ACACAGTAGGAAACAAATAAGGGA 57.804 37.500 0.00 0.00 0.00 4.20
5009 5514 7.061094 GTGTAAAGATGAAGTGCAAAGTAATGC 59.939 37.037 0.00 0.00 46.58 3.56
5147 5652 9.138062 TGCAAAAATGTAGCAATAACTATTGTG 57.862 29.630 10.38 0.81 43.72 3.33
5159 5664 3.731652 AAGCAGTGCAAAAATGTAGCA 57.268 38.095 19.20 0.00 35.63 3.49
5177 5682 3.182967 AGCGTAAAGATGAGCTCGAAAG 58.817 45.455 9.64 0.00 34.48 2.62
5184 5689 4.865365 ACAGAAACTAGCGTAAAGATGAGC 59.135 41.667 0.00 0.00 0.00 4.26
5218 5723 2.472695 TGCATTCGCTGGAACTAGTT 57.527 45.000 8.13 8.13 39.64 2.24
5230 5735 8.525876 CAAATACTAAATTGACACATGCATTCG 58.474 33.333 0.00 0.00 0.00 3.34
5258 5763 7.480810 GGAAATTATTTCATAAGCGTTCACCT 58.519 34.615 17.92 0.00 41.43 4.00
5263 5768 5.741982 GTGCGGAAATTATTTCATAAGCGTT 59.258 36.000 17.92 0.00 41.43 4.84
5264 5769 5.163703 TGTGCGGAAATTATTTCATAAGCGT 60.164 36.000 17.92 0.00 41.43 5.07
5283 5788 0.445829 TGCAACATTATCCGTGTGCG 59.554 50.000 0.00 0.00 37.95 5.34
5527 6032 7.010552 CGAAATCGAAGAAATTGGTGAGATAGT 59.989 37.037 0.00 0.00 43.58 2.12
5662 6167 0.861450 GACAAAAATCATCGCGCCCG 60.861 55.000 0.00 0.00 0.00 6.13
5691 6196 5.048921 CACTCGTGTAGACCTTTTCTAGACA 60.049 44.000 8.73 0.00 46.87 3.41
5700 6205 1.961394 TCTTGCACTCGTGTAGACCTT 59.039 47.619 0.00 0.00 0.00 3.50
5709 6214 3.432252 CGAGGTAAAAATCTTGCACTCGT 59.568 43.478 7.61 0.00 40.96 4.18
5821 6326 4.910195 ACACAGAAATACCTGCAGAATGA 58.090 39.130 17.39 0.00 38.34 2.57
5837 6342 2.223688 CGCCAAAATCACCAAACACAGA 60.224 45.455 0.00 0.00 0.00 3.41
5839 6344 1.478510 ACGCCAAAATCACCAAACACA 59.521 42.857 0.00 0.00 0.00 3.72
5843 6348 3.797256 CGTAAAACGCCAAAATCACCAAA 59.203 39.130 0.00 0.00 33.65 3.28
5852 6357 1.359475 GCCACCGTAAAACGCCAAA 59.641 52.632 0.00 0.00 40.91 3.28
5941 6454 2.486472 AATGGGAGCAGACTGTTGAG 57.514 50.000 3.99 0.00 0.00 3.02
5942 6455 2.507484 CAAATGGGAGCAGACTGTTGA 58.493 47.619 3.99 0.00 0.00 3.18
5943 6456 1.068055 GCAAATGGGAGCAGACTGTTG 60.068 52.381 3.99 0.09 0.00 3.33
6174 6824 1.095228 CCGTCACAACAACTGCCACT 61.095 55.000 0.00 0.00 0.00 4.00
6221 6871 0.322975 ACTGCAGCAGTAGAGGGTTG 59.677 55.000 27.22 0.00 43.46 3.77
6358 7037 9.556030 GTACTCTATAACCAAAAGAAATGTTGC 57.444 33.333 0.00 0.00 0.00 4.17
6365 7044 8.867097 ACACTCAGTACTCTATAACCAAAAGAA 58.133 33.333 0.00 0.00 0.00 2.52
6367 7046 9.490379 AAACACTCAGTACTCTATAACCAAAAG 57.510 33.333 0.00 0.00 0.00 2.27
6372 7051 7.600065 TGTCAAACACTCAGTACTCTATAACC 58.400 38.462 0.00 0.00 0.00 2.85
6416 7097 3.382083 AGTTCTGTGGGACAAAAACCT 57.618 42.857 0.00 0.00 44.16 3.50
6536 7218 3.131400 GTGGGCCAGTTTTGTCAGTTTTA 59.869 43.478 6.40 0.00 0.00 1.52
7134 7831 4.657824 CGTCGTCCTGGTTGCCGT 62.658 66.667 0.00 0.00 0.00 5.68
7191 7888 4.544047 TGCTGCACGCTGTGGTCA 62.544 61.111 0.00 1.37 40.11 4.02
7233 7930 2.046217 GGAGGCCAAACTCCGGTC 60.046 66.667 5.01 0.00 46.81 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.