Multiple sequence alignment - TraesCS5A01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G291000 chr5A 100.000 5214 0 0 1 5214 501922220 501917007 0.000000e+00 9629.0
1 TraesCS5A01G291000 chr5A 83.026 1302 136 55 2331 3603 501847980 501846735 0.000000e+00 1101.0
2 TraesCS5A01G291000 chr5A 83.609 726 85 21 2018 2723 501924170 501923459 0.000000e+00 651.0
3 TraesCS5A01G291000 chr5A 86.166 506 44 16 917 1420 501925205 501924724 1.660000e-144 523.0
4 TraesCS5A01G291000 chr5A 79.775 445 63 13 3789 4233 501922268 501921851 1.100000e-76 298.0
5 TraesCS5A01G291000 chr5A 79.293 396 55 13 2 370 501918383 501917988 8.670000e-63 252.0
6 TraesCS5A01G291000 chr5A 84.024 169 18 8 3445 3606 501881585 501881419 2.510000e-33 154.0
7 TraesCS5A01G291000 chr5A 98.077 52 1 0 321 372 501921849 501921798 2.000000e-14 91.6
8 TraesCS5A01G291000 chr5A 98.077 52 1 0 372 423 501921900 501921849 2.000000e-14 91.6
9 TraesCS5A01G291000 chr5D 95.292 4163 116 20 372 4492 396142831 396138707 0.000000e+00 6529.0
10 TraesCS5A01G291000 chr5D 85.125 1042 95 35 2226 3247 395934979 395933978 0.000000e+00 1011.0
11 TraesCS5A01G291000 chr5D 82.788 947 115 29 2100 3023 396144818 396143897 0.000000e+00 802.0
12 TraesCS5A01G291000 chr5D 93.566 373 15 5 1 372 396143143 396142779 9.870000e-152 547.0
13 TraesCS5A01G291000 chr5D 83.770 573 60 16 3059 3603 395690465 395689898 3.600000e-141 512.0
14 TraesCS5A01G291000 chr5D 82.249 507 39 21 4700 5187 396138710 396138236 1.760000e-104 390.0
15 TraesCS5A01G291000 chr5D 90.637 267 16 5 3343 3603 395933798 395933535 3.860000e-91 346.0
16 TraesCS5A01G291000 chr5D 85.260 346 27 9 1075 1420 396145928 396145607 8.370000e-88 335.0
17 TraesCS5A01G291000 chr5D 77.532 632 90 27 3789 4407 396143191 396142599 3.010000e-87 333.0
18 TraesCS5A01G291000 chr5D 78.535 396 55 14 2 370 396139355 396138963 3.140000e-57 233.0
19 TraesCS5A01G291000 chr5D 84.762 105 13 2 264 368 395933458 395933357 9.240000e-18 102.0
20 TraesCS5A01G291000 chr5D 94.545 55 3 0 3552 3606 395955889 395955835 9.300000e-13 86.1
21 TraesCS5A01G291000 chr5D 82.051 78 6 5 4692 4761 301067869 301067946 5.640000e-05 60.2
22 TraesCS5A01G291000 chr5D 96.875 32 0 1 3667 3697 395955786 395955755 9.000000e-03 52.8
23 TraesCS5A01G291000 chr5B 94.499 4181 157 20 372 4510 476016475 476012326 0.000000e+00 6379.0
24 TraesCS5A01G291000 chr5B 84.800 1000 86 43 2226 3203 476001561 476000606 0.000000e+00 944.0
25 TraesCS5A01G291000 chr5B 86.339 549 61 8 2018 2558 476019257 476018715 2.090000e-163 586.0
26 TraesCS5A01G291000 chr5B 86.847 555 33 13 4695 5214 476012183 476011634 7.520000e-163 584.0
27 TraesCS5A01G291000 chr5B 83.276 580 61 18 3054 3603 475956689 475956116 7.790000e-138 501.0
28 TraesCS5A01G291000 chr5B 85.774 478 39 16 918 1387 476020301 476019845 3.650000e-131 479.0
29 TraesCS5A01G291000 chr5B 82.885 409 47 7 980 1380 476008516 476008123 3.860000e-91 346.0
30 TraesCS5A01G291000 chr5B 89.354 263 21 3 3343 3599 476000286 476000025 1.810000e-84 324.0
31 TraesCS5A01G291000 chr5B 81.026 390 52 12 2176 2548 476007424 476007040 1.840000e-74 291.0
32 TraesCS5A01G291000 chr5B 98.077 156 3 0 217 372 476016579 476016424 6.650000e-69 272.0
33 TraesCS5A01G291000 chr5B 78.788 396 57 13 2 370 476012998 476012603 1.880000e-59 241.0
34 TraesCS5A01G291000 chr5B 78.598 271 44 9 4149 4407 476016510 476016242 3.230000e-37 167.0
35 TraesCS5A01G291000 chr5B 84.118 170 17 7 3445 3606 476006284 476006117 6.990000e-34 156.0
36 TraesCS5A01G291000 chr5B 95.402 87 4 0 1 87 476016678 476016592 7.040000e-29 139.0
37 TraesCS5A01G291000 chr5B 86.667 105 11 2 264 368 475999886 475999785 4.270000e-21 113.0
38 TraesCS5A01G291000 chr5B 87.912 91 11 0 278 368 475955993 475955903 1.990000e-19 108.0
39 TraesCS5A01G291000 chr5B 87.324 71 6 2 372 441 475955950 475955882 1.560000e-10 78.7
40 TraesCS5A01G291000 chr5B 92.453 53 3 1 318 370 476005756 476005705 2.010000e-09 75.0
41 TraesCS5A01G291000 chr5B 94.737 38 2 0 3667 3704 476006068 476006031 5.640000e-05 60.2
42 TraesCS5A01G291000 chr5B 100.000 28 0 0 85 112 476016603 476016576 9.000000e-03 52.8
43 TraesCS5A01G291000 chr7D 82.071 396 60 8 986 1375 243336042 243335652 1.400000e-85 327.0
44 TraesCS5A01G291000 chr7B 81.818 396 61 7 986 1375 218821048 218820658 6.510000e-84 322.0
45 TraesCS5A01G291000 chr7B 82.051 78 6 6 4692 4761 646217830 646217753 5.640000e-05 60.2
46 TraesCS5A01G291000 chr7A 80.964 415 65 10 971 1376 258416000 258415591 3.030000e-82 316.0
47 TraesCS5A01G291000 chr6D 82.051 78 6 6 4692 4761 458904737 458904660 5.640000e-05 60.2
48 TraesCS5A01G291000 chr2B 82.051 78 6 5 4692 4761 357729443 357729366 5.640000e-05 60.2
49 TraesCS5A01G291000 chr1B 81.013 79 6 6 4692 4761 285991413 285991491 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G291000 chr5A 501917007 501922220 5213 True 9629.000000 9629 100.000000 1 5214 1 chr5A.!!$R3 5213
1 TraesCS5A01G291000 chr5A 501846735 501847980 1245 True 1101.000000 1101 83.026000 2331 3603 1 chr5A.!!$R1 1272
2 TraesCS5A01G291000 chr5A 501917988 501925205 7217 True 317.866667 651 87.499500 2 4233 6 chr5A.!!$R4 4231
3 TraesCS5A01G291000 chr5D 396138236 396145928 7692 True 1309.857143 6529 85.031714 1 5187 7 chr5D.!!$R4 5186
4 TraesCS5A01G291000 chr5D 395689898 395690465 567 True 512.000000 512 83.770000 3059 3603 1 chr5D.!!$R1 544
5 TraesCS5A01G291000 chr5D 395933357 395934979 1622 True 486.333333 1011 86.841333 264 3603 3 chr5D.!!$R2 3339
6 TraesCS5A01G291000 chr5B 476005705 476020301 14596 True 702.000000 6379 88.538786 1 5214 14 chr5B.!!$R3 5213
7 TraesCS5A01G291000 chr5B 475999785 476001561 1776 True 460.333333 944 86.940333 264 3599 3 chr5B.!!$R2 3335
8 TraesCS5A01G291000 chr5B 475955882 475956689 807 True 229.233333 501 86.170667 278 3603 3 chr5B.!!$R1 3325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 4470 0.457851 CTAGAAGAGCACAGGGACGG 59.542 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4235 8773 7.416438 GCATAGCTCTTACTAACTTCCTACACA 60.416 40.741 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
355 4446 4.103311 AGGGAGGCATTACCAATAGAGAAC 59.897 45.833 0.00 0.00 43.14 3.01
356 4447 4.141482 GGGAGGCATTACCAATAGAGAACA 60.141 45.833 0.00 0.00 43.14 3.18
357 4448 4.816925 GGAGGCATTACCAATAGAGAACAC 59.183 45.833 0.00 0.00 43.14 3.32
358 4449 5.396884 GGAGGCATTACCAATAGAGAACACT 60.397 44.000 0.00 0.00 43.14 3.55
359 4450 5.431765 AGGCATTACCAATAGAGAACACTG 58.568 41.667 0.00 0.00 43.14 3.66
360 4451 4.035675 GGCATTACCAATAGAGAACACTGC 59.964 45.833 0.00 0.00 38.86 4.40
361 4452 4.878397 GCATTACCAATAGAGAACACTGCT 59.122 41.667 0.00 0.00 0.00 4.24
362 4453 6.049149 GCATTACCAATAGAGAACACTGCTA 58.951 40.000 0.00 0.00 0.00 3.49
363 4454 6.201806 GCATTACCAATAGAGAACACTGCTAG 59.798 42.308 0.00 0.00 0.00 3.42
364 4455 7.492524 CATTACCAATAGAGAACACTGCTAGA 58.507 38.462 0.00 0.00 0.00 2.43
365 4456 7.476540 TTACCAATAGAGAACACTGCTAGAA 57.523 36.000 0.00 0.00 0.00 2.10
366 4457 5.971763 ACCAATAGAGAACACTGCTAGAAG 58.028 41.667 0.00 0.00 0.00 2.85
367 4458 5.717178 ACCAATAGAGAACACTGCTAGAAGA 59.283 40.000 4.16 0.00 0.00 2.87
368 4459 6.127479 ACCAATAGAGAACACTGCTAGAAGAG 60.127 42.308 4.16 0.00 0.00 2.85
379 4470 0.457851 CTAGAAGAGCACAGGGACGG 59.542 60.000 0.00 0.00 0.00 4.79
380 4471 0.970937 TAGAAGAGCACAGGGACGGG 60.971 60.000 0.00 0.00 0.00 5.28
381 4472 3.959991 GAAGAGCACAGGGACGGGC 62.960 68.421 0.00 0.00 0.00 6.13
401 4492 3.146104 CCAGGGAGGCATTACCAATAG 57.854 52.381 0.00 0.00 43.14 1.73
402 4493 2.711009 CCAGGGAGGCATTACCAATAGA 59.289 50.000 0.00 0.00 43.14 1.98
403 4494 3.244700 CCAGGGAGGCATTACCAATAGAG 60.245 52.174 0.00 0.00 43.14 2.43
404 4495 3.648067 CAGGGAGGCATTACCAATAGAGA 59.352 47.826 0.00 0.00 43.14 3.10
405 4496 3.906846 AGGGAGGCATTACCAATAGAGAG 59.093 47.826 0.00 0.00 43.14 3.20
477 4576 4.049186 TCTTGTACTCTCGTTTGTTGCTC 58.951 43.478 0.00 0.00 0.00 4.26
478 4577 3.446310 TGTACTCTCGTTTGTTGCTCA 57.554 42.857 0.00 0.00 0.00 4.26
479 4578 3.120792 TGTACTCTCGTTTGTTGCTCAC 58.879 45.455 0.00 0.00 0.00 3.51
480 4579 2.604046 ACTCTCGTTTGTTGCTCACT 57.396 45.000 0.00 0.00 0.00 3.41
481 4580 2.906354 ACTCTCGTTTGTTGCTCACTT 58.094 42.857 0.00 0.00 0.00 3.16
482 4581 2.609459 ACTCTCGTTTGTTGCTCACTTG 59.391 45.455 0.00 0.00 0.00 3.16
483 4582 1.330521 TCTCGTTTGTTGCTCACTTGC 59.669 47.619 0.00 0.00 0.00 4.01
484 4583 1.331756 CTCGTTTGTTGCTCACTTGCT 59.668 47.619 0.00 0.00 0.00 3.91
4235 8773 1.474879 GAAGACTGGTAGAAGAGCGCT 59.525 52.381 11.27 11.27 0.00 5.92
4252 8790 3.508793 AGCGCTGTGTAGGAAGTTAGTAA 59.491 43.478 10.39 0.00 0.00 2.24
4415 8953 5.276461 ACAATGCTGACTATCGTATGGAA 57.724 39.130 0.00 0.00 0.00 3.53
4473 9011 5.532406 AGCAACATGTTCTGTGTGTTCTATT 59.468 36.000 8.48 0.00 38.39 1.73
4510 9048 6.942532 ATTCTGTCTGTGTACAAATGTGTT 57.057 33.333 0.00 0.00 39.30 3.32
4524 9062 6.607735 CAAATGTGTTTGGAGCTCATTTTT 57.392 33.333 17.19 0.99 40.78 1.94
4525 9063 6.423862 CAAATGTGTTTGGAGCTCATTTTTG 58.576 36.000 17.19 9.27 40.78 2.44
4526 9064 3.456280 TGTGTTTGGAGCTCATTTTTGC 58.544 40.909 17.19 0.00 0.00 3.68
4527 9065 2.472488 GTGTTTGGAGCTCATTTTTGCG 59.528 45.455 17.19 0.00 0.00 4.85
4528 9066 2.100584 TGTTTGGAGCTCATTTTTGCGT 59.899 40.909 17.19 0.00 0.00 5.24
4529 9067 3.123050 GTTTGGAGCTCATTTTTGCGTT 58.877 40.909 17.19 0.00 0.00 4.84
4530 9068 3.451141 TTGGAGCTCATTTTTGCGTTT 57.549 38.095 17.19 0.00 0.00 3.60
4531 9069 3.451141 TGGAGCTCATTTTTGCGTTTT 57.549 38.095 17.19 0.00 0.00 2.43
4532 9070 4.576216 TGGAGCTCATTTTTGCGTTTTA 57.424 36.364 17.19 0.00 0.00 1.52
4533 9071 4.938080 TGGAGCTCATTTTTGCGTTTTAA 58.062 34.783 17.19 0.00 0.00 1.52
4534 9072 4.981674 TGGAGCTCATTTTTGCGTTTTAAG 59.018 37.500 17.19 0.00 0.00 1.85
4535 9073 4.982295 GGAGCTCATTTTTGCGTTTTAAGT 59.018 37.500 17.19 0.00 0.00 2.24
4536 9074 5.107875 GGAGCTCATTTTTGCGTTTTAAGTG 60.108 40.000 17.19 0.00 0.00 3.16
4537 9075 4.209080 AGCTCATTTTTGCGTTTTAAGTGC 59.791 37.500 0.00 0.00 0.00 4.40
4538 9076 4.026145 GCTCATTTTTGCGTTTTAAGTGCA 60.026 37.500 0.00 0.00 36.72 4.57
4539 9077 5.333263 GCTCATTTTTGCGTTTTAAGTGCAT 60.333 36.000 0.00 0.00 38.60 3.96
4540 9078 5.972018 TCATTTTTGCGTTTTAAGTGCATG 58.028 33.333 0.00 0.00 38.60 4.06
4541 9079 3.850657 TTTTGCGTTTTAAGTGCATGC 57.149 38.095 11.82 11.82 38.60 4.06
4542 9080 2.498807 TTGCGTTTTAAGTGCATGCA 57.501 40.000 18.46 18.46 38.60 3.96
4543 9081 2.721274 TGCGTTTTAAGTGCATGCAT 57.279 40.000 25.64 11.73 32.86 3.96
4544 9082 3.839051 TGCGTTTTAAGTGCATGCATA 57.161 38.095 25.64 10.55 32.86 3.14
4545 9083 4.368874 TGCGTTTTAAGTGCATGCATAT 57.631 36.364 25.64 17.80 32.86 1.78
4546 9084 4.742417 TGCGTTTTAAGTGCATGCATATT 58.258 34.783 25.64 22.56 32.86 1.28
4547 9085 4.797868 TGCGTTTTAAGTGCATGCATATTC 59.202 37.500 25.64 11.03 32.86 1.75
4548 9086 4.797868 GCGTTTTAAGTGCATGCATATTCA 59.202 37.500 25.64 10.75 0.00 2.57
4549 9087 5.459762 GCGTTTTAAGTGCATGCATATTCAT 59.540 36.000 25.64 6.32 0.00 2.57
4550 9088 6.019640 GCGTTTTAAGTGCATGCATATTCATT 60.020 34.615 25.64 13.72 0.00 2.57
4551 9089 7.549649 CGTTTTAAGTGCATGCATATTCATTC 58.450 34.615 25.64 8.18 0.00 2.67
4552 9090 7.306167 CGTTTTAAGTGCATGCATATTCATTCC 60.306 37.037 25.64 7.38 0.00 3.01
4553 9091 6.712179 TTAAGTGCATGCATATTCATTCCA 57.288 33.333 25.64 3.23 0.00 3.53
4554 9092 5.801531 AAGTGCATGCATATTCATTCCAT 57.198 34.783 25.64 0.00 0.00 3.41
4555 9093 5.386958 AGTGCATGCATATTCATTCCATC 57.613 39.130 25.64 5.79 0.00 3.51
4556 9094 5.077564 AGTGCATGCATATTCATTCCATCT 58.922 37.500 25.64 8.25 0.00 2.90
4557 9095 5.048013 AGTGCATGCATATTCATTCCATCTG 60.048 40.000 25.64 0.00 0.00 2.90
4558 9096 4.830600 TGCATGCATATTCATTCCATCTGT 59.169 37.500 18.46 0.00 0.00 3.41
4559 9097 6.005198 TGCATGCATATTCATTCCATCTGTA 58.995 36.000 18.46 0.00 0.00 2.74
4560 9098 6.150474 TGCATGCATATTCATTCCATCTGTAG 59.850 38.462 18.46 0.00 0.00 2.74
4561 9099 6.373495 GCATGCATATTCATTCCATCTGTAGA 59.627 38.462 14.21 0.00 0.00 2.59
4562 9100 7.414208 GCATGCATATTCATTCCATCTGTAGAG 60.414 40.741 14.21 0.00 0.00 2.43
4563 9101 7.307131 TGCATATTCATTCCATCTGTAGAGA 57.693 36.000 0.00 0.00 0.00 3.10
4564 9102 7.157347 TGCATATTCATTCCATCTGTAGAGAC 58.843 38.462 0.00 0.00 0.00 3.36
4565 9103 6.593382 GCATATTCATTCCATCTGTAGAGACC 59.407 42.308 0.00 0.00 0.00 3.85
4566 9104 7.674120 CATATTCATTCCATCTGTAGAGACCA 58.326 38.462 0.00 0.00 0.00 4.02
4567 9105 6.566079 ATTCATTCCATCTGTAGAGACCAA 57.434 37.500 0.00 0.00 0.00 3.67
4568 9106 6.566079 TTCATTCCATCTGTAGAGACCAAT 57.434 37.500 0.00 0.00 0.00 3.16
4576 9114 6.127897 CCATCTGTAGAGACCAATTTGTTTCC 60.128 42.308 0.00 0.00 0.00 3.13
4589 9127 1.303317 GTTTCCGCATGGACCCAGT 60.303 57.895 0.00 0.00 46.45 4.00
4590 9128 0.893727 GTTTCCGCATGGACCCAGTT 60.894 55.000 0.00 0.00 46.45 3.16
4592 9130 0.608035 TTCCGCATGGACCCAGTTTC 60.608 55.000 0.00 0.00 46.45 2.78
4593 9131 1.002134 CCGCATGGACCCAGTTTCT 60.002 57.895 0.00 0.00 37.49 2.52
4594 9132 1.026718 CCGCATGGACCCAGTTTCTC 61.027 60.000 0.00 0.00 37.49 2.87
4599 9137 4.079253 GCATGGACCCAGTTTCTCTTTTA 58.921 43.478 0.00 0.00 0.00 1.52
4600 9138 4.082733 GCATGGACCCAGTTTCTCTTTTAC 60.083 45.833 0.00 0.00 0.00 2.01
4601 9139 4.094830 TGGACCCAGTTTCTCTTTTACC 57.905 45.455 0.00 0.00 0.00 2.85
4606 9152 6.256643 ACCCAGTTTCTCTTTTACCAAGTA 57.743 37.500 0.00 0.00 0.00 2.24
4610 9156 7.217906 CCAGTTTCTCTTTTACCAAGTAGTCT 58.782 38.462 0.00 0.00 0.00 3.24
4632 9179 3.822735 TGTGGCTTCTCCTCAAATCAAAG 59.177 43.478 0.00 0.00 35.56 2.77
4633 9180 3.823304 GTGGCTTCTCCTCAAATCAAAGT 59.177 43.478 0.00 0.00 35.26 2.66
4634 9181 3.822735 TGGCTTCTCCTCAAATCAAAGTG 59.177 43.478 0.00 0.00 35.26 3.16
4635 9182 3.823304 GGCTTCTCCTCAAATCAAAGTGT 59.177 43.478 0.00 0.00 0.00 3.55
4636 9183 4.083057 GGCTTCTCCTCAAATCAAAGTGTC 60.083 45.833 0.00 0.00 0.00 3.67
4638 9185 5.182760 GCTTCTCCTCAAATCAAAGTGTCAT 59.817 40.000 0.00 0.00 0.00 3.06
4639 9186 6.622462 GCTTCTCCTCAAATCAAAGTGTCATC 60.622 42.308 0.00 0.00 0.00 2.92
4641 9188 7.244886 TCTCCTCAAATCAAAGTGTCATCTA 57.755 36.000 0.00 0.00 0.00 1.98
4643 9190 7.767659 TCTCCTCAAATCAAAGTGTCATCTATG 59.232 37.037 0.00 0.00 0.00 2.23
4644 9191 7.623630 TCCTCAAATCAAAGTGTCATCTATGA 58.376 34.615 0.00 0.00 0.00 2.15
4645 9192 8.270030 TCCTCAAATCAAAGTGTCATCTATGAT 58.730 33.333 0.00 0.00 39.30 2.45
4650 9197 6.441093 TCAAAGTGTCATCTATGATTTGCC 57.559 37.500 10.56 0.00 39.30 4.52
4651 9198 5.065090 TCAAAGTGTCATCTATGATTTGCCG 59.935 40.000 10.56 0.00 39.30 5.69
4652 9199 4.142609 AGTGTCATCTATGATTTGCCGT 57.857 40.909 0.00 0.00 39.30 5.68
4653 9200 4.517285 AGTGTCATCTATGATTTGCCGTT 58.483 39.130 0.00 0.00 39.30 4.44
4654 9201 4.943705 AGTGTCATCTATGATTTGCCGTTT 59.056 37.500 0.00 0.00 39.30 3.60
4655 9202 5.065218 AGTGTCATCTATGATTTGCCGTTTC 59.935 40.000 0.00 0.00 39.30 2.78
4656 9203 4.335315 TGTCATCTATGATTTGCCGTTTCC 59.665 41.667 0.00 0.00 39.30 3.13
4657 9204 3.882888 TCATCTATGATTTGCCGTTTCCC 59.117 43.478 0.00 0.00 0.00 3.97
4658 9205 2.650322 TCTATGATTTGCCGTTTCCCC 58.350 47.619 0.00 0.00 0.00 4.81
4659 9206 1.681264 CTATGATTTGCCGTTTCCCCC 59.319 52.381 0.00 0.00 0.00 5.40
4677 9224 1.546323 CCCTGCTCCAGTGATTTGTGT 60.546 52.381 0.00 0.00 0.00 3.72
4679 9226 2.497138 CTGCTCCAGTGATTTGTGTCA 58.503 47.619 0.00 0.00 0.00 3.58
4680 9227 2.221169 TGCTCCAGTGATTTGTGTCAC 58.779 47.619 0.00 0.00 46.90 3.67
4689 9236 4.610945 GTGATTTGTGTCACTTTTGAGGG 58.389 43.478 4.27 0.00 43.96 4.30
4691 9238 5.010012 GTGATTTGTGTCACTTTTGAGGGAT 59.990 40.000 4.27 0.00 43.96 3.85
4707 9256 3.693578 GAGGGATTTGAGCTTTCTTCAGG 59.306 47.826 0.00 0.00 0.00 3.86
4715 9264 2.165234 GAGCTTTCTTCAGGATTTGGCC 59.835 50.000 0.00 0.00 0.00 5.36
4716 9265 1.205655 GCTTTCTTCAGGATTTGGCCC 59.794 52.381 0.00 0.00 0.00 5.80
4729 9278 0.820871 TTGGCCCAACTGTTTGTCAC 59.179 50.000 0.00 0.00 0.00 3.67
4730 9279 0.033601 TGGCCCAACTGTTTGTCACT 60.034 50.000 0.00 0.00 0.00 3.41
4731 9280 0.668535 GGCCCAACTGTTTGTCACTC 59.331 55.000 0.00 0.00 0.00 3.51
4734 9283 2.917933 CCCAACTGTTTGTCACTCTCA 58.082 47.619 0.00 0.00 0.00 3.27
4736 9285 2.285220 CCAACTGTTTGTCACTCTCACG 59.715 50.000 0.00 0.00 0.00 4.35
4747 9303 1.956170 CTCTCACGCGCACCAGTTT 60.956 57.895 5.73 0.00 0.00 2.66
4768 9334 4.572985 TGCCACTTTGTTCTGATTTCAG 57.427 40.909 0.97 0.97 45.08 3.02
4776 9342 5.581126 TTGTTCTGATTTCAGCAAACAGT 57.419 34.783 12.05 0.00 39.90 3.55
4777 9343 5.173774 TGTTCTGATTTCAGCAAACAGTC 57.826 39.130 9.53 0.00 43.46 3.51
4778 9344 4.639755 TGTTCTGATTTCAGCAAACAGTCA 59.360 37.500 9.53 0.00 43.46 3.41
4779 9345 5.125257 TGTTCTGATTTCAGCAAACAGTCAA 59.875 36.000 9.53 0.00 43.46 3.18
4780 9346 5.833406 TCTGATTTCAGCAAACAGTCAAA 57.167 34.783 2.60 0.00 43.46 2.69
4781 9347 5.824429 TCTGATTTCAGCAAACAGTCAAAG 58.176 37.500 2.60 0.00 43.46 2.77
4782 9348 4.362279 TGATTTCAGCAAACAGTCAAAGC 58.638 39.130 0.00 0.00 0.00 3.51
4861 9435 7.606456 CCTGGTAGCATGTTTAGAAAGTAAAGA 59.394 37.037 0.00 0.00 0.00 2.52
4904 9478 4.036734 TCAAGTGAAGCAAATTGTCCAGAC 59.963 41.667 0.00 0.00 0.00 3.51
4966 9544 7.325097 GGTACAACATTTCAATTTCGGTACAAG 59.675 37.037 0.00 0.00 32.42 3.16
4971 9549 6.149474 ACATTTCAATTTCGGTACAAGAGAGG 59.851 38.462 0.00 0.00 0.00 3.69
4992 9570 3.550436 GGAAGTACGATCGTCCAGAATCC 60.550 52.174 26.48 19.21 36.32 3.01
4993 9571 2.933573 AGTACGATCGTCCAGAATCCT 58.066 47.619 26.48 5.98 0.00 3.24
5021 9599 7.962964 ACATGTAGAAATTTTCGACTCTGAA 57.037 32.000 18.96 3.75 36.43 3.02
5134 9712 3.441572 GTCTGTATGCTTTCCAGTGCAAT 59.558 43.478 0.00 0.00 42.74 3.56
5151 9729 2.950433 CAATCGTTGCAAAGCTCCAAT 58.050 42.857 7.57 0.00 0.00 3.16
5152 9730 2.919229 CAATCGTTGCAAAGCTCCAATC 59.081 45.455 7.57 0.00 0.00 2.67
5165 9748 2.719739 CTCCAATCACTGCATCAACCT 58.280 47.619 0.00 0.00 0.00 3.50
5180 9763 3.595173 TCAACCTCATACATGAACACCG 58.405 45.455 0.00 0.00 36.18 4.94
5197 9780 2.095213 CACCGAAATATCACCACAACCG 59.905 50.000 0.00 0.00 0.00 4.44
5198 9781 2.289819 ACCGAAATATCACCACAACCGT 60.290 45.455 0.00 0.00 0.00 4.83
5200 9783 3.425625 CCGAAATATCACCACAACCGTTG 60.426 47.826 9.80 9.80 0.00 4.10
5208 9791 1.028905 CCACAACCGTTGGAACATGT 58.971 50.000 15.60 0.00 39.30 3.21
5211 9794 2.857152 CACAACCGTTGGAACATGTTTG 59.143 45.455 13.36 6.81 39.30 2.93
5212 9795 2.494073 ACAACCGTTGGAACATGTTTGT 59.506 40.909 13.36 7.47 39.30 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.576648 GTTCTGATAGTTTGGTCCCCCT 59.423 50.000 0.00 0.00 0.00 4.79
360 4451 0.457851 CCGTCCCTGTGCTCTTCTAG 59.542 60.000 0.00 0.00 0.00 2.43
361 4452 0.970937 CCCGTCCCTGTGCTCTTCTA 60.971 60.000 0.00 0.00 0.00 2.10
362 4453 2.286523 CCCGTCCCTGTGCTCTTCT 61.287 63.158 0.00 0.00 0.00 2.85
363 4454 2.266055 CCCGTCCCTGTGCTCTTC 59.734 66.667 0.00 0.00 0.00 2.87
364 4455 4.021925 GCCCGTCCCTGTGCTCTT 62.022 66.667 0.00 0.00 0.00 2.85
381 4472 2.711009 TCTATTGGTAATGCCTCCCTGG 59.289 50.000 0.00 0.00 38.35 4.45
382 4473 3.648067 TCTCTATTGGTAATGCCTCCCTG 59.352 47.826 0.00 0.00 38.35 4.45
383 4474 3.906846 CTCTCTATTGGTAATGCCTCCCT 59.093 47.826 0.00 0.00 38.35 4.20
384 4475 3.558109 GCTCTCTATTGGTAATGCCTCCC 60.558 52.174 0.00 0.00 38.35 4.30
385 4476 3.071602 TGCTCTCTATTGGTAATGCCTCC 59.928 47.826 0.00 0.00 38.35 4.30
386 4477 4.061596 GTGCTCTCTATTGGTAATGCCTC 58.938 47.826 0.00 0.00 38.35 4.70
387 4478 3.713764 AGTGCTCTCTATTGGTAATGCCT 59.286 43.478 0.00 0.00 38.35 4.75
388 4479 3.812053 CAGTGCTCTCTATTGGTAATGCC 59.188 47.826 0.00 0.00 37.90 4.40
389 4480 3.249559 GCAGTGCTCTCTATTGGTAATGC 59.750 47.826 8.18 0.00 31.12 3.56
390 4481 4.701765 AGCAGTGCTCTCTATTGGTAATG 58.298 43.478 13.14 0.00 30.62 1.90
391 4482 5.835819 TCTAGCAGTGCTCTCTATTGGTAAT 59.164 40.000 23.64 0.00 40.44 1.89
392 4483 5.201243 TCTAGCAGTGCTCTCTATTGGTAA 58.799 41.667 23.64 0.00 40.44 2.85
393 4484 4.793201 TCTAGCAGTGCTCTCTATTGGTA 58.207 43.478 23.64 0.00 40.44 3.25
394 4485 3.636679 TCTAGCAGTGCTCTCTATTGGT 58.363 45.455 23.64 0.00 40.44 3.67
395 4486 4.340666 TCTTCTAGCAGTGCTCTCTATTGG 59.659 45.833 23.64 5.32 40.44 3.16
396 4487 5.512753 TCTTCTAGCAGTGCTCTCTATTG 57.487 43.478 23.64 6.94 40.44 1.90
397 4488 5.772825 CTCTTCTAGCAGTGCTCTCTATT 57.227 43.478 23.64 0.00 40.44 1.73
477 4576 5.675575 GCATAAAAGTCCATGAGAGCAAGTG 60.676 44.000 0.00 0.00 0.00 3.16
478 4577 4.397417 GCATAAAAGTCCATGAGAGCAAGT 59.603 41.667 0.00 0.00 0.00 3.16
479 4578 4.397103 TGCATAAAAGTCCATGAGAGCAAG 59.603 41.667 0.00 0.00 0.00 4.01
480 4579 4.334552 TGCATAAAAGTCCATGAGAGCAA 58.665 39.130 0.00 0.00 0.00 3.91
481 4580 3.954200 TGCATAAAAGTCCATGAGAGCA 58.046 40.909 0.00 0.00 0.00 4.26
482 4581 4.337555 ACATGCATAAAAGTCCATGAGAGC 59.662 41.667 0.00 0.00 38.65 4.09
483 4582 7.741027 ATACATGCATAAAAGTCCATGAGAG 57.259 36.000 0.00 0.00 38.65 3.20
484 4583 8.432013 AGTATACATGCATAAAAGTCCATGAGA 58.568 33.333 5.50 0.00 38.65 3.27
4235 8773 7.416438 GCATAGCTCTTACTAACTTCCTACACA 60.416 40.741 0.00 0.00 0.00 3.72
4316 8854 6.867662 AGTTCTAGTTCTCAAAACACCATG 57.132 37.500 0.00 0.00 0.00 3.66
4383 8921 8.850884 CGATAGTCAGCATTGTATTTATTTCG 57.149 34.615 0.00 0.00 0.00 3.46
4415 8953 4.501400 GGCAACAAATAACAAAGCTCTGGT 60.501 41.667 0.00 0.00 0.00 4.00
4473 9011 9.725019 ACACAGACAGAATATAAAAGTGATTCA 57.275 29.630 0.00 0.00 32.96 2.57
4495 9033 3.951037 AGCTCCAAACACATTTGTACACA 59.049 39.130 0.00 0.00 43.23 3.72
4510 9048 3.451141 AAACGCAAAAATGAGCTCCAA 57.549 38.095 12.15 0.00 0.00 3.53
4512 9050 4.982295 ACTTAAAACGCAAAAATGAGCTCC 59.018 37.500 12.15 0.00 0.00 4.70
4515 9053 4.026145 TGCACTTAAAACGCAAAAATGAGC 60.026 37.500 0.00 0.00 31.46 4.26
4516 9054 5.633996 TGCACTTAAAACGCAAAAATGAG 57.366 34.783 0.00 0.00 31.46 2.90
4517 9055 5.557893 GCATGCACTTAAAACGCAAAAATGA 60.558 36.000 14.21 0.00 39.48 2.57
4519 9057 4.272018 TGCATGCACTTAAAACGCAAAAAT 59.728 33.333 18.46 0.00 39.48 1.82
4520 9058 3.618594 TGCATGCACTTAAAACGCAAAAA 59.381 34.783 18.46 0.00 39.48 1.94
4522 9060 2.814269 TGCATGCACTTAAAACGCAAA 58.186 38.095 18.46 0.00 39.48 3.68
4523 9061 2.498807 TGCATGCACTTAAAACGCAA 57.501 40.000 18.46 0.00 39.48 4.85
4524 9062 2.721274 ATGCATGCACTTAAAACGCA 57.279 40.000 25.37 0.00 40.50 5.24
4525 9063 4.797868 TGAATATGCATGCACTTAAAACGC 59.202 37.500 25.37 7.19 0.00 4.84
4526 9064 7.306167 GGAATGAATATGCATGCACTTAAAACG 60.306 37.037 25.37 0.00 0.00 3.60
4527 9065 7.492020 TGGAATGAATATGCATGCACTTAAAAC 59.508 33.333 25.37 11.09 0.00 2.43
4528 9066 7.554211 TGGAATGAATATGCATGCACTTAAAA 58.446 30.769 25.37 7.92 0.00 1.52
4529 9067 7.110043 TGGAATGAATATGCATGCACTTAAA 57.890 32.000 25.37 9.68 0.00 1.52
4530 9068 6.712179 TGGAATGAATATGCATGCACTTAA 57.288 33.333 25.37 13.28 0.00 1.85
4531 9069 6.717997 AGATGGAATGAATATGCATGCACTTA 59.282 34.615 25.37 13.40 0.00 2.24
4532 9070 5.538813 AGATGGAATGAATATGCATGCACTT 59.461 36.000 25.37 19.41 0.00 3.16
4533 9071 5.048013 CAGATGGAATGAATATGCATGCACT 60.048 40.000 25.37 14.70 0.00 4.40
4534 9072 5.161358 CAGATGGAATGAATATGCATGCAC 58.839 41.667 25.37 11.08 0.00 4.57
4535 9073 4.830600 ACAGATGGAATGAATATGCATGCA 59.169 37.500 25.04 25.04 0.00 3.96
4536 9074 5.386958 ACAGATGGAATGAATATGCATGC 57.613 39.130 11.82 11.82 0.00 4.06
4537 9075 7.822822 TCTCTACAGATGGAATGAATATGCATG 59.177 37.037 10.16 0.00 0.00 4.06
4538 9076 7.823310 GTCTCTACAGATGGAATGAATATGCAT 59.177 37.037 3.79 3.79 0.00 3.96
4539 9077 7.157347 GTCTCTACAGATGGAATGAATATGCA 58.843 38.462 0.00 0.00 0.00 3.96
4540 9078 6.593382 GGTCTCTACAGATGGAATGAATATGC 59.407 42.308 0.00 0.00 0.00 3.14
4541 9079 7.674120 TGGTCTCTACAGATGGAATGAATATG 58.326 38.462 0.00 0.00 0.00 1.78
4542 9080 7.862274 TGGTCTCTACAGATGGAATGAATAT 57.138 36.000 0.00 0.00 0.00 1.28
4543 9081 7.675161 TTGGTCTCTACAGATGGAATGAATA 57.325 36.000 0.00 0.00 0.00 1.75
4544 9082 6.566079 TTGGTCTCTACAGATGGAATGAAT 57.434 37.500 0.00 0.00 0.00 2.57
4545 9083 6.566079 ATTGGTCTCTACAGATGGAATGAA 57.434 37.500 0.00 0.00 0.00 2.57
4546 9084 6.566079 AATTGGTCTCTACAGATGGAATGA 57.434 37.500 0.00 0.00 0.00 2.57
4547 9085 6.600822 ACAAATTGGTCTCTACAGATGGAATG 59.399 38.462 0.00 0.00 0.00 2.67
4548 9086 6.725364 ACAAATTGGTCTCTACAGATGGAAT 58.275 36.000 0.00 0.00 0.00 3.01
4549 9087 6.126863 ACAAATTGGTCTCTACAGATGGAA 57.873 37.500 0.00 0.00 0.00 3.53
4550 9088 5.762179 ACAAATTGGTCTCTACAGATGGA 57.238 39.130 0.00 0.00 0.00 3.41
4551 9089 6.127897 GGAAACAAATTGGTCTCTACAGATGG 60.128 42.308 0.00 0.00 0.00 3.51
4552 9090 6.402550 CGGAAACAAATTGGTCTCTACAGATG 60.403 42.308 0.00 0.00 0.00 2.90
4553 9091 5.643777 CGGAAACAAATTGGTCTCTACAGAT 59.356 40.000 0.00 0.00 0.00 2.90
4554 9092 4.994852 CGGAAACAAATTGGTCTCTACAGA 59.005 41.667 0.00 0.00 0.00 3.41
4555 9093 4.378459 GCGGAAACAAATTGGTCTCTACAG 60.378 45.833 0.00 0.00 0.00 2.74
4556 9094 3.500680 GCGGAAACAAATTGGTCTCTACA 59.499 43.478 0.00 0.00 0.00 2.74
4557 9095 3.500680 TGCGGAAACAAATTGGTCTCTAC 59.499 43.478 0.00 0.00 0.00 2.59
4558 9096 3.745799 TGCGGAAACAAATTGGTCTCTA 58.254 40.909 0.00 0.00 0.00 2.43
4559 9097 2.582052 TGCGGAAACAAATTGGTCTCT 58.418 42.857 0.00 0.00 0.00 3.10
4560 9098 3.244976 CATGCGGAAACAAATTGGTCTC 58.755 45.455 0.00 0.00 0.00 3.36
4561 9099 2.029110 CCATGCGGAAACAAATTGGTCT 60.029 45.455 0.00 0.00 0.00 3.85
4562 9100 2.029470 TCCATGCGGAAACAAATTGGTC 60.029 45.455 0.00 0.00 38.83 4.02
4563 9101 1.967066 TCCATGCGGAAACAAATTGGT 59.033 42.857 0.00 0.00 38.83 3.67
4564 9102 2.336667 GTCCATGCGGAAACAAATTGG 58.663 47.619 0.00 0.00 45.20 3.16
4565 9103 2.336667 GGTCCATGCGGAAACAAATTG 58.663 47.619 0.00 0.00 45.20 2.32
4566 9104 1.275010 GGGTCCATGCGGAAACAAATT 59.725 47.619 0.00 0.00 45.20 1.82
4567 9105 0.894835 GGGTCCATGCGGAAACAAAT 59.105 50.000 0.00 0.00 45.20 2.32
4568 9106 0.468214 TGGGTCCATGCGGAAACAAA 60.468 50.000 0.00 0.00 45.20 2.83
4576 9114 0.036010 AGAGAAACTGGGTCCATGCG 60.036 55.000 0.00 0.00 0.00 4.73
4589 9127 6.990349 CCACAGACTACTTGGTAAAAGAGAAA 59.010 38.462 0.00 0.00 0.00 2.52
4590 9128 6.522054 CCACAGACTACTTGGTAAAAGAGAA 58.478 40.000 0.00 0.00 0.00 2.87
4592 9130 4.691216 GCCACAGACTACTTGGTAAAAGAG 59.309 45.833 0.00 0.00 32.50 2.85
4593 9131 4.347000 AGCCACAGACTACTTGGTAAAAGA 59.653 41.667 0.00 0.00 32.50 2.52
4594 9132 4.642429 AGCCACAGACTACTTGGTAAAAG 58.358 43.478 0.00 0.00 32.50 2.27
4599 9137 2.300437 GAGAAGCCACAGACTACTTGGT 59.700 50.000 0.00 0.00 32.50 3.67
4600 9138 2.354203 GGAGAAGCCACAGACTACTTGG 60.354 54.545 0.00 0.00 36.34 3.61
4601 9139 2.564947 AGGAGAAGCCACAGACTACTTG 59.435 50.000 0.00 0.00 40.02 3.16
4606 9152 1.722034 TTGAGGAGAAGCCACAGACT 58.278 50.000 0.00 0.00 38.52 3.24
4610 9156 3.507162 TTGATTTGAGGAGAAGCCACA 57.493 42.857 0.00 0.00 40.02 4.17
4632 9179 4.882671 AACGGCAAATCATAGATGACAC 57.117 40.909 0.00 0.00 40.03 3.67
4633 9180 4.335315 GGAAACGGCAAATCATAGATGACA 59.665 41.667 0.00 0.00 40.03 3.58
4634 9181 4.261197 GGGAAACGGCAAATCATAGATGAC 60.261 45.833 0.00 0.00 40.03 3.06
4635 9182 3.882888 GGGAAACGGCAAATCATAGATGA 59.117 43.478 0.00 0.00 41.70 2.92
4636 9183 3.004734 GGGGAAACGGCAAATCATAGATG 59.995 47.826 0.00 0.00 0.00 2.90
4638 9185 2.650322 GGGGAAACGGCAAATCATAGA 58.350 47.619 0.00 0.00 0.00 1.98
4639 9186 1.681264 GGGGGAAACGGCAAATCATAG 59.319 52.381 0.00 0.00 0.00 2.23
4641 9188 0.041090 AGGGGGAAACGGCAAATCAT 59.959 50.000 0.00 0.00 0.00 2.45
4643 9190 1.890174 CAGGGGGAAACGGCAAATC 59.110 57.895 0.00 0.00 0.00 2.17
4644 9191 2.282783 GCAGGGGGAAACGGCAAAT 61.283 57.895 0.00 0.00 0.00 2.32
4645 9192 2.915137 GCAGGGGGAAACGGCAAA 60.915 61.111 0.00 0.00 0.00 3.68
4647 9194 4.344865 GAGCAGGGGGAAACGGCA 62.345 66.667 0.00 0.00 0.00 5.69
4650 9197 2.045926 CTGGAGCAGGGGGAAACG 60.046 66.667 0.00 0.00 0.00 3.60
4651 9198 1.303643 CACTGGAGCAGGGGGAAAC 60.304 63.158 0.00 0.00 35.51 2.78
4652 9199 0.846427 ATCACTGGAGCAGGGGGAAA 60.846 55.000 0.00 0.00 35.28 3.13
4653 9200 0.846427 AATCACTGGAGCAGGGGGAA 60.846 55.000 0.00 0.00 35.28 3.97
4654 9201 0.846427 AAATCACTGGAGCAGGGGGA 60.846 55.000 0.00 0.00 35.28 4.81
4655 9202 0.682209 CAAATCACTGGAGCAGGGGG 60.682 60.000 0.00 0.00 35.28 5.40
4656 9203 0.038744 ACAAATCACTGGAGCAGGGG 59.961 55.000 0.00 0.00 35.28 4.79
4657 9204 1.171308 CACAAATCACTGGAGCAGGG 58.829 55.000 0.00 0.00 36.00 4.45
4658 9205 1.808945 GACACAAATCACTGGAGCAGG 59.191 52.381 0.00 0.00 35.51 4.85
4659 9206 2.225019 GTGACACAAATCACTGGAGCAG 59.775 50.000 0.00 0.00 44.71 4.24
4677 9224 4.104383 AGCTCAAATCCCTCAAAAGTGA 57.896 40.909 0.00 0.00 0.00 3.41
4679 9226 5.143369 AGAAAGCTCAAATCCCTCAAAAGT 58.857 37.500 0.00 0.00 0.00 2.66
4680 9227 5.718724 AGAAAGCTCAAATCCCTCAAAAG 57.281 39.130 0.00 0.00 0.00 2.27
4681 9228 5.598005 TGAAGAAAGCTCAAATCCCTCAAAA 59.402 36.000 0.00 0.00 0.00 2.44
4682 9229 5.139727 TGAAGAAAGCTCAAATCCCTCAAA 58.860 37.500 0.00 0.00 0.00 2.69
4683 9230 4.728772 TGAAGAAAGCTCAAATCCCTCAA 58.271 39.130 0.00 0.00 0.00 3.02
4684 9231 4.330250 CTGAAGAAAGCTCAAATCCCTCA 58.670 43.478 0.00 0.00 0.00 3.86
4685 9232 3.693578 CCTGAAGAAAGCTCAAATCCCTC 59.306 47.826 0.00 0.00 0.00 4.30
4686 9233 3.331889 TCCTGAAGAAAGCTCAAATCCCT 59.668 43.478 0.00 0.00 0.00 4.20
4688 9235 5.911378 AATCCTGAAGAAAGCTCAAATCC 57.089 39.130 0.00 0.00 0.00 3.01
4689 9236 6.098017 CCAAATCCTGAAGAAAGCTCAAATC 58.902 40.000 0.00 0.00 0.00 2.17
4691 9238 4.262164 GCCAAATCCTGAAGAAAGCTCAAA 60.262 41.667 0.00 0.00 0.00 2.69
4707 9256 2.102252 TGACAAACAGTTGGGCCAAATC 59.898 45.455 22.82 9.90 39.22 2.17
4715 9264 2.285220 CGTGAGAGTGACAAACAGTTGG 59.715 50.000 0.00 0.00 39.22 3.77
4716 9265 2.285834 GCGTGAGAGTGACAAACAGTTG 60.286 50.000 0.00 0.00 40.84 3.16
4729 9278 1.956170 AAACTGGTGCGCGTGAGAG 60.956 57.895 8.43 1.62 0.00 3.20
4730 9279 2.108157 AAACTGGTGCGCGTGAGA 59.892 55.556 8.43 0.00 0.00 3.27
4731 9280 2.249309 CAAACTGGTGCGCGTGAG 59.751 61.111 8.43 0.00 0.00 3.51
4736 9285 2.627510 AAAGTGGCAAACTGGTGCGC 62.628 55.000 0.00 0.00 45.91 6.09
4747 9303 3.243501 GCTGAAATCAGAACAAAGTGGCA 60.244 43.478 14.43 0.00 46.59 4.92
4776 9342 0.679505 AGGTCGCACTACAGCTTTGA 59.320 50.000 0.00 0.00 0.00 2.69
4777 9343 0.792640 CAGGTCGCACTACAGCTTTG 59.207 55.000 0.00 0.00 0.00 2.77
4778 9344 0.951040 GCAGGTCGCACTACAGCTTT 60.951 55.000 0.00 0.00 41.79 3.51
4779 9345 1.374758 GCAGGTCGCACTACAGCTT 60.375 57.895 0.00 0.00 41.79 3.74
4780 9346 2.262915 GCAGGTCGCACTACAGCT 59.737 61.111 0.00 0.00 41.79 4.24
4805 9371 3.449227 CGACCGCTACAGCTCCCA 61.449 66.667 0.00 0.00 39.32 4.37
4861 9435 8.624776 CACTTGAATCAAAGAACTTCCTAGTTT 58.375 33.333 0.00 0.00 44.51 2.66
4904 9478 5.835257 ACCCATATTCTGCATGAAATTTCG 58.165 37.500 13.34 1.48 38.29 3.46
4966 9544 2.286872 TGGACGATCGTACTTCCTCTC 58.713 52.381 29.54 10.36 0.00 3.20
4971 9549 3.315749 AGGATTCTGGACGATCGTACTTC 59.684 47.826 29.54 19.53 0.00 3.01
5134 9712 1.266718 GTGATTGGAGCTTTGCAACGA 59.733 47.619 7.19 0.00 0.00 3.85
5151 9729 3.979101 TGTATGAGGTTGATGCAGTGA 57.021 42.857 0.00 0.00 0.00 3.41
5152 9730 4.193865 TCATGTATGAGGTTGATGCAGTG 58.806 43.478 0.00 0.00 32.11 3.66
5165 9748 6.481976 GGTGATATTTCGGTGTTCATGTATGA 59.518 38.462 0.00 0.00 34.44 2.15
5180 9763 3.754323 TCCAACGGTTGTGGTGATATTTC 59.246 43.478 18.73 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.