Multiple sequence alignment - TraesCS5A01G290800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G290800 chr5A 100.000 3776 0 0 1 3776 501404464 501408239 0.000000e+00 6974.0
1 TraesCS5A01G290800 chr5A 84.083 2356 242 67 771 3055 500630900 500633193 0.000000e+00 2150.0
2 TraesCS5A01G290800 chr5B 96.351 2220 58 7 790 2991 474610364 474612578 0.000000e+00 3629.0
3 TraesCS5A01G290800 chr5B 83.021 2562 250 72 771 3255 474577020 474579473 0.000000e+00 2150.0
4 TraesCS5A01G290800 chr5B 96.970 792 23 1 1 792 474609471 474610261 0.000000e+00 1328.0
5 TraesCS5A01G290800 chr5B 79.852 1618 265 36 1174 2747 475588374 475589974 0.000000e+00 1125.0
6 TraesCS5A01G290800 chr5B 95.107 327 11 5 2990 3314 474612753 474613076 9.360000e-141 510.0
7 TraesCS5A01G290800 chr5D 79.852 1618 267 34 1174 2747 395257397 395258999 0.000000e+00 1127.0
8 TraesCS5A01G290800 chr1B 94.030 67 4 0 673 739 317578278 317578212 6.670000e-18 102.0
9 TraesCS5A01G290800 chr1A 89.552 67 6 1 673 739 287695933 287695998 2.420000e-12 84.2
10 TraesCS5A01G290800 chr1A 96.875 32 1 0 669 700 464836316 464836347 2.000000e-03 54.7
11 TraesCS5A01G290800 chr4D 100.000 28 0 0 673 700 482367170 482367197 7.000000e-03 52.8
12 TraesCS5A01G290800 chr4B 100.000 28 0 0 673 700 598404910 598404883 7.000000e-03 52.8
13 TraesCS5A01G290800 chr2D 100.000 28 0 0 673 700 447308769 447308742 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G290800 chr5A 501404464 501408239 3775 False 6974.000000 6974 100.000000 1 3776 1 chr5A.!!$F2 3775
1 TraesCS5A01G290800 chr5A 500630900 500633193 2293 False 2150.000000 2150 84.083000 771 3055 1 chr5A.!!$F1 2284
2 TraesCS5A01G290800 chr5B 474577020 474579473 2453 False 2150.000000 2150 83.021000 771 3255 1 chr5B.!!$F1 2484
3 TraesCS5A01G290800 chr5B 474609471 474613076 3605 False 1822.333333 3629 96.142667 1 3314 3 chr5B.!!$F3 3313
4 TraesCS5A01G290800 chr5B 475588374 475589974 1600 False 1125.000000 1125 79.852000 1174 2747 1 chr5B.!!$F2 1573
5 TraesCS5A01G290800 chr5D 395257397 395258999 1602 False 1127.000000 1127 79.852000 1174 2747 1 chr5D.!!$F1 1573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 965 1.269778 TGCTCAGTTCTCCTCACAACG 60.270 52.381 0.0 0.0 0.0 4.1 F
2026 2177 0.461135 GGTTAATGGCTGCACATGGG 59.539 55.000 0.5 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2675 2900 0.178947 AGATTTTTCCCCGTGGCCAA 60.179 50.0 7.24 0.00 0.00 4.52 R
3722 4139 0.037326 CGTCGGTGCTATGGCCATAT 60.037 55.0 25.62 4.77 37.74 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 9.699703 GTAACCATTGTTGCCTCTTTATTTTTA 57.300 29.630 0.00 0.00 35.87 1.52
184 185 1.693606 AGGTGGGCCACTTTTTGATTG 59.306 47.619 33.87 0.00 37.19 2.67
188 189 2.971330 TGGGCCACTTTTTGATTGTGAT 59.029 40.909 0.00 0.00 33.95 3.06
258 259 3.965379 TCGTGCCAAGGAGTACAATTA 57.035 42.857 0.00 0.00 0.00 1.40
325 326 7.231467 AGGTTCAGGTATATCTTGTGTGTTTT 58.769 34.615 0.00 0.00 0.00 2.43
429 430 9.903682 ATATTAATTTTGCAAGAATCTGGATCG 57.096 29.630 0.00 0.00 0.00 3.69
507 508 9.995003 TCCTTGCACTTTTCATTGTTTATTTAT 57.005 25.926 0.00 0.00 0.00 1.40
528 529 5.649782 ATCCCTTCATAACAACTTGCTTG 57.350 39.130 0.00 0.00 35.77 4.01
553 554 3.493524 GGCTGCCTCTACCAAGAATACTC 60.494 52.174 12.43 0.00 0.00 2.59
629 630 6.963049 ATGTATGGTGTTCGTAGTTTCTTC 57.037 37.500 0.00 0.00 0.00 2.87
635 636 4.124970 GTGTTCGTAGTTTCTTCCCACTT 58.875 43.478 0.00 0.00 0.00 3.16
636 637 4.210746 GTGTTCGTAGTTTCTTCCCACTTC 59.789 45.833 0.00 0.00 0.00 3.01
639 640 2.302157 CGTAGTTTCTTCCCACTTCCCT 59.698 50.000 0.00 0.00 0.00 4.20
682 683 7.336931 ACACATTAATGTTGAATGTACTCCCTC 59.663 37.037 18.50 0.00 43.91 4.30
717 718 2.936050 GTGGAACTAAAACCACGACG 57.064 50.000 0.00 0.00 45.16 5.12
792 793 8.851541 TCGGACTTAAAATGTGGTAAATAGTT 57.148 30.769 0.00 0.00 0.00 2.24
859 965 1.269778 TGCTCAGTTCTCCTCACAACG 60.270 52.381 0.00 0.00 0.00 4.10
1241 1372 7.993183 CCTTATTACACTATCTTCATGGGTGTT 59.007 37.037 0.00 0.00 40.78 3.32
1309 1440 4.935205 GGTTATCCAAAGCCATCAAAAACC 59.065 41.667 0.00 0.00 0.00 3.27
1334 1465 3.070878 TGTCAGTGGTGAGTTGATGCTTA 59.929 43.478 0.00 0.00 31.53 3.09
1712 1863 3.181469 TGACTTCAGCGAGTTTGGTTAGT 60.181 43.478 0.00 0.00 0.00 2.24
1769 1920 1.620822 AGGTTGGTTCTTGATGTGGC 58.379 50.000 0.00 0.00 0.00 5.01
1857 2008 3.423848 GCAAAGAAGGGGAATTGCG 57.576 52.632 0.00 0.00 38.79 4.85
2018 2169 2.062971 ATCTGGCAGGTTAATGGCTG 57.937 50.000 15.73 4.18 45.51 4.85
2026 2177 0.461135 GGTTAATGGCTGCACATGGG 59.539 55.000 0.50 0.00 0.00 4.00
2112 2263 3.442977 ACTAAGGTTAGTACTGCTCGTGG 59.557 47.826 5.39 0.00 41.92 4.94
2609 2834 7.707893 GTGTGGAAAATGATTGGATAATGGAAG 59.292 37.037 0.00 0.00 0.00 3.46
2640 2865 2.046700 CCCATACCGTGTTGGCGT 60.047 61.111 0.00 0.00 43.94 5.68
2675 2900 1.677217 GCTCAAAGATTCGCTCCCACT 60.677 52.381 0.00 0.00 0.00 4.00
2702 2927 1.562475 CGGGGAAAAATCTGGGAGGTA 59.438 52.381 0.00 0.00 0.00 3.08
2762 2988 1.489481 AGATCTCGTCATGCCCTTGA 58.511 50.000 0.00 0.00 0.00 3.02
2781 3007 2.162208 TGATCTGCTCCGTTGAATTTGC 59.838 45.455 0.00 0.00 0.00 3.68
2786 3012 0.798776 CTCCGTTGAATTTGCGCTCT 59.201 50.000 9.73 0.00 0.00 4.09
2835 3062 7.340487 TGAGCTGTTAGAAGTTATCTCTCATCA 59.660 37.037 0.00 0.00 39.71 3.07
3095 3500 1.202394 TGAAACTGCATGGTTGTGTGC 60.202 47.619 0.00 0.00 41.61 4.57
3146 3553 3.760151 TGCTTCATGTTCTGGAATTGGAG 59.240 43.478 0.00 0.00 0.00 3.86
3203 3611 4.839121 AGGGATTATGTTTTGCGTGACTA 58.161 39.130 0.00 0.00 0.00 2.59
3247 3664 8.506168 TCGATCTGAACCTAATTTGCTTTATT 57.494 30.769 0.00 0.00 0.00 1.40
3297 3714 0.398318 GTCCACCTCTTGCCTCTTGT 59.602 55.000 0.00 0.00 0.00 3.16
3298 3715 0.397941 TCCACCTCTTGCCTCTTGTG 59.602 55.000 0.00 0.00 0.00 3.33
3299 3716 1.239968 CCACCTCTTGCCTCTTGTGC 61.240 60.000 0.00 0.00 0.00 4.57
3302 3719 0.959372 CCTCTTGCCTCTTGTGCTGG 60.959 60.000 0.00 0.00 0.00 4.85
3303 3720 0.250640 CTCTTGCCTCTTGTGCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
3304 3721 0.535780 TCTTGCCTCTTGTGCTGGTG 60.536 55.000 0.00 0.00 0.00 4.17
3305 3722 0.820891 CTTGCCTCTTGTGCTGGTGT 60.821 55.000 0.00 0.00 0.00 4.16
3306 3723 1.102809 TTGCCTCTTGTGCTGGTGTG 61.103 55.000 0.00 0.00 0.00 3.82
3307 3724 1.526917 GCCTCTTGTGCTGGTGTGT 60.527 57.895 0.00 0.00 0.00 3.72
3308 3725 1.789078 GCCTCTTGTGCTGGTGTGTG 61.789 60.000 0.00 0.00 0.00 3.82
3309 3726 0.464373 CCTCTTGTGCTGGTGTGTGT 60.464 55.000 0.00 0.00 0.00 3.72
3311 3728 1.064621 CTTGTGCTGGTGTGTGTGC 59.935 57.895 0.00 0.00 0.00 4.57
3312 3729 2.651367 CTTGTGCTGGTGTGTGTGCG 62.651 60.000 0.00 0.00 0.00 5.34
3313 3730 3.952675 GTGCTGGTGTGTGTGCGG 61.953 66.667 0.00 0.00 0.00 5.69
3314 3731 4.481617 TGCTGGTGTGTGTGCGGT 62.482 61.111 0.00 0.00 0.00 5.68
3315 3732 2.280524 GCTGGTGTGTGTGCGGTA 60.281 61.111 0.00 0.00 0.00 4.02
3316 3733 1.890041 GCTGGTGTGTGTGCGGTAA 60.890 57.895 0.00 0.00 0.00 2.85
3317 3734 1.234615 GCTGGTGTGTGTGCGGTAAT 61.235 55.000 0.00 0.00 0.00 1.89
3318 3735 1.942127 GCTGGTGTGTGTGCGGTAATA 60.942 52.381 0.00 0.00 0.00 0.98
3319 3736 2.627945 CTGGTGTGTGTGCGGTAATAT 58.372 47.619 0.00 0.00 0.00 1.28
3320 3737 3.787785 CTGGTGTGTGTGCGGTAATATA 58.212 45.455 0.00 0.00 0.00 0.86
3321 3738 4.377021 CTGGTGTGTGTGCGGTAATATAT 58.623 43.478 0.00 0.00 0.00 0.86
3322 3739 5.532664 TGGTGTGTGTGCGGTAATATATA 57.467 39.130 0.00 0.00 0.00 0.86
3323 3740 5.915175 TGGTGTGTGTGCGGTAATATATAA 58.085 37.500 0.00 0.00 0.00 0.98
3324 3741 6.526526 TGGTGTGTGTGCGGTAATATATAAT 58.473 36.000 0.00 0.00 0.00 1.28
3325 3742 6.647481 TGGTGTGTGTGCGGTAATATATAATC 59.353 38.462 0.00 0.00 0.00 1.75
3326 3743 6.647481 GGTGTGTGTGCGGTAATATATAATCA 59.353 38.462 0.00 0.00 0.00 2.57
3327 3744 7.171848 GGTGTGTGTGCGGTAATATATAATCAA 59.828 37.037 0.00 0.00 0.00 2.57
3328 3745 8.717821 GTGTGTGTGCGGTAATATATAATCAAT 58.282 33.333 0.00 0.00 0.00 2.57
3329 3746 9.278978 TGTGTGTGCGGTAATATATAATCAATT 57.721 29.630 0.00 0.00 0.00 2.32
3347 3764 8.837099 AATCAATTTCATGTTCCCCATAGTAA 57.163 30.769 0.00 0.00 30.71 2.24
3348 3765 7.639113 TCAATTTCATGTTCCCCATAGTAAC 57.361 36.000 0.00 0.00 30.71 2.50
3349 3766 7.410174 TCAATTTCATGTTCCCCATAGTAACT 58.590 34.615 0.00 0.00 30.71 2.24
3350 3767 7.339212 TCAATTTCATGTTCCCCATAGTAACTG 59.661 37.037 0.00 0.00 30.71 3.16
3351 3768 6.381498 TTTCATGTTCCCCATAGTAACTGA 57.619 37.500 0.00 0.00 30.71 3.41
3352 3769 5.353394 TCATGTTCCCCATAGTAACTGAC 57.647 43.478 0.00 0.00 30.71 3.51
3353 3770 4.780554 TCATGTTCCCCATAGTAACTGACA 59.219 41.667 0.00 0.00 30.71 3.58
3354 3771 4.546829 TGTTCCCCATAGTAACTGACAC 57.453 45.455 0.00 0.00 0.00 3.67
3355 3772 3.904965 TGTTCCCCATAGTAACTGACACA 59.095 43.478 0.00 0.00 0.00 3.72
3356 3773 4.534500 TGTTCCCCATAGTAACTGACACAT 59.466 41.667 0.00 0.00 0.00 3.21
3357 3774 4.753516 TCCCCATAGTAACTGACACATG 57.246 45.455 0.00 0.00 0.00 3.21
3358 3775 4.101114 TCCCCATAGTAACTGACACATGT 58.899 43.478 0.00 0.00 0.00 3.21
3359 3776 4.161565 TCCCCATAGTAACTGACACATGTC 59.838 45.833 5.02 5.02 44.97 3.06
3372 3789 5.869753 GACACATGTCACAGCTTTAAGAT 57.130 39.130 7.15 0.00 44.18 2.40
3373 3790 6.246420 GACACATGTCACAGCTTTAAGATT 57.754 37.500 7.15 0.00 44.18 2.40
3374 3791 6.639632 ACACATGTCACAGCTTTAAGATTT 57.360 33.333 0.00 0.00 0.00 2.17
3375 3792 6.441274 ACACATGTCACAGCTTTAAGATTTG 58.559 36.000 0.00 0.00 0.00 2.32
3376 3793 6.039717 ACACATGTCACAGCTTTAAGATTTGT 59.960 34.615 0.00 0.00 0.00 2.83
3377 3794 6.361481 CACATGTCACAGCTTTAAGATTTGTG 59.639 38.462 14.22 14.22 40.25 3.33
3378 3795 4.858935 TGTCACAGCTTTAAGATTTGTGC 58.141 39.130 15.05 12.05 39.10 4.57
3379 3796 3.908382 GTCACAGCTTTAAGATTTGTGCG 59.092 43.478 15.05 0.00 39.10 5.34
3380 3797 3.563808 TCACAGCTTTAAGATTTGTGCGT 59.436 39.130 15.05 0.00 39.10 5.24
3381 3798 3.665409 CACAGCTTTAAGATTTGTGCGTG 59.335 43.478 10.16 0.00 33.60 5.34
3382 3799 3.563808 ACAGCTTTAAGATTTGTGCGTGA 59.436 39.130 0.00 0.00 0.00 4.35
3383 3800 4.036262 ACAGCTTTAAGATTTGTGCGTGAA 59.964 37.500 0.00 0.00 0.00 3.18
3384 3801 4.975502 CAGCTTTAAGATTTGTGCGTGAAA 59.024 37.500 0.00 0.00 0.00 2.69
3385 3802 5.630680 CAGCTTTAAGATTTGTGCGTGAAAT 59.369 36.000 0.00 0.00 0.00 2.17
3386 3803 6.144402 CAGCTTTAAGATTTGTGCGTGAAATT 59.856 34.615 0.00 0.00 0.00 1.82
3387 3804 6.144402 AGCTTTAAGATTTGTGCGTGAAATTG 59.856 34.615 0.00 0.00 0.00 2.32
3388 3805 6.143758 GCTTTAAGATTTGTGCGTGAAATTGA 59.856 34.615 0.00 0.00 0.00 2.57
3389 3806 7.306515 GCTTTAAGATTTGTGCGTGAAATTGAA 60.307 33.333 0.00 0.00 0.00 2.69
3390 3807 7.993821 TTAAGATTTGTGCGTGAAATTGAAA 57.006 28.000 0.00 0.00 0.00 2.69
3391 3808 6.515043 AAGATTTGTGCGTGAAATTGAAAG 57.485 33.333 0.00 0.00 0.00 2.62
3392 3809 4.445385 AGATTTGTGCGTGAAATTGAAAGC 59.555 37.500 0.00 0.00 0.00 3.51
3393 3810 2.859526 TGTGCGTGAAATTGAAAGCA 57.140 40.000 0.00 0.00 0.00 3.91
3397 3814 4.145876 TGCGTGAAATTGAAAGCACTAG 57.854 40.909 0.00 0.00 0.00 2.57
3398 3815 3.812609 TGCGTGAAATTGAAAGCACTAGA 59.187 39.130 0.00 0.00 0.00 2.43
3399 3816 4.083855 TGCGTGAAATTGAAAGCACTAGAG 60.084 41.667 0.00 0.00 0.00 2.43
3400 3817 4.152402 GCGTGAAATTGAAAGCACTAGAGA 59.848 41.667 0.00 0.00 0.00 3.10
3401 3818 5.669848 GCGTGAAATTGAAAGCACTAGAGAG 60.670 44.000 0.00 0.00 0.00 3.20
3402 3819 5.626211 GTGAAATTGAAAGCACTAGAGAGC 58.374 41.667 0.00 0.00 0.00 4.09
3403 3820 4.389992 TGAAATTGAAAGCACTAGAGAGCG 59.610 41.667 0.00 0.00 36.73 5.03
3404 3821 3.601443 ATTGAAAGCACTAGAGAGCGT 57.399 42.857 0.00 0.00 36.73 5.07
3405 3822 3.386768 TTGAAAGCACTAGAGAGCGTT 57.613 42.857 0.00 2.07 36.30 4.84
3406 3823 3.386768 TGAAAGCACTAGAGAGCGTTT 57.613 42.857 0.00 1.15 34.26 3.60
3407 3824 3.059884 TGAAAGCACTAGAGAGCGTTTG 58.940 45.455 0.00 0.00 34.26 2.93
3408 3825 1.433534 AAGCACTAGAGAGCGTTTGC 58.566 50.000 0.00 0.00 43.24 3.68
3434 3851 4.877323 AAAACCACTCTCAGAAAACGTC 57.123 40.909 0.00 0.00 0.00 4.34
3435 3852 3.536956 AACCACTCTCAGAAAACGTCA 57.463 42.857 0.00 0.00 0.00 4.35
3436 3853 3.536956 ACCACTCTCAGAAAACGTCAA 57.463 42.857 0.00 0.00 0.00 3.18
3437 3854 4.073293 ACCACTCTCAGAAAACGTCAAT 57.927 40.909 0.00 0.00 0.00 2.57
3438 3855 4.451900 ACCACTCTCAGAAAACGTCAATT 58.548 39.130 0.00 0.00 0.00 2.32
3439 3856 4.511826 ACCACTCTCAGAAAACGTCAATTC 59.488 41.667 0.00 0.00 0.00 2.17
3440 3857 4.752101 CCACTCTCAGAAAACGTCAATTCT 59.248 41.667 5.63 5.63 36.35 2.40
3441 3858 5.926542 CCACTCTCAGAAAACGTCAATTCTA 59.073 40.000 9.91 0.00 34.24 2.10
3442 3859 6.591834 CCACTCTCAGAAAACGTCAATTCTAT 59.408 38.462 9.91 0.00 34.24 1.98
3443 3860 7.759886 CCACTCTCAGAAAACGTCAATTCTATA 59.240 37.037 9.91 3.27 34.24 1.31
3444 3861 9.140286 CACTCTCAGAAAACGTCAATTCTATAA 57.860 33.333 9.91 1.45 34.24 0.98
3445 3862 9.141400 ACTCTCAGAAAACGTCAATTCTATAAC 57.859 33.333 9.91 0.00 34.24 1.89
3446 3863 9.140286 CTCTCAGAAAACGTCAATTCTATAACA 57.860 33.333 9.91 0.00 34.24 2.41
3447 3864 9.653287 TCTCAGAAAACGTCAATTCTATAACAT 57.347 29.630 9.91 0.00 34.24 2.71
3453 3870 9.887406 AAAACGTCAATTCTATAACATTTTCGT 57.113 25.926 0.00 0.00 0.00 3.85
3475 3892 8.876275 TCGTATTATATGTGGTTTCAGTTACC 57.124 34.615 0.00 0.00 36.17 2.85
3476 3893 8.476447 TCGTATTATATGTGGTTTCAGTTACCA 58.524 33.333 0.00 0.00 43.20 3.25
3477 3894 9.268268 CGTATTATATGTGGTTTCAGTTACCAT 57.732 33.333 0.00 0.00 46.63 3.55
3482 3899 5.176407 TGTGGTTTCAGTTACCATTTTCG 57.824 39.130 0.00 0.00 46.63 3.46
3483 3900 4.641094 TGTGGTTTCAGTTACCATTTTCGT 59.359 37.500 0.00 0.00 46.63 3.85
3484 3901 5.821470 TGTGGTTTCAGTTACCATTTTCGTA 59.179 36.000 0.00 0.00 46.63 3.43
3485 3902 6.487331 TGTGGTTTCAGTTACCATTTTCGTAT 59.513 34.615 0.00 0.00 46.63 3.06
3486 3903 7.019418 GTGGTTTCAGTTACCATTTTCGTATC 58.981 38.462 0.00 0.00 46.63 2.24
3487 3904 6.149807 TGGTTTCAGTTACCATTTTCGTATCC 59.850 38.462 0.00 0.00 40.65 2.59
3488 3905 6.149807 GGTTTCAGTTACCATTTTCGTATCCA 59.850 38.462 0.00 0.00 35.67 3.41
3489 3906 7.308710 GGTTTCAGTTACCATTTTCGTATCCAA 60.309 37.037 0.00 0.00 35.67 3.53
3490 3907 7.747155 TTCAGTTACCATTTTCGTATCCAAA 57.253 32.000 0.00 0.00 0.00 3.28
3491 3908 7.747155 TCAGTTACCATTTTCGTATCCAAAA 57.253 32.000 0.00 0.00 0.00 2.44
3492 3909 8.343168 TCAGTTACCATTTTCGTATCCAAAAT 57.657 30.769 0.00 0.00 34.42 1.82
3493 3910 8.455682 TCAGTTACCATTTTCGTATCCAAAATC 58.544 33.333 0.00 0.00 32.25 2.17
3494 3911 7.700656 CAGTTACCATTTTCGTATCCAAAATCC 59.299 37.037 0.00 0.00 32.25 3.01
3495 3912 5.592104 ACCATTTTCGTATCCAAAATCCC 57.408 39.130 0.00 0.00 32.25 3.85
3496 3913 4.097286 ACCATTTTCGTATCCAAAATCCCG 59.903 41.667 0.00 0.00 32.25 5.14
3497 3914 4.336993 CCATTTTCGTATCCAAAATCCCGA 59.663 41.667 0.00 0.00 32.25 5.14
3498 3915 4.950434 TTTTCGTATCCAAAATCCCGAC 57.050 40.909 0.00 0.00 0.00 4.79
3499 3916 3.613494 TTCGTATCCAAAATCCCGACA 57.387 42.857 0.00 0.00 0.00 4.35
3500 3917 3.613494 TCGTATCCAAAATCCCGACAA 57.387 42.857 0.00 0.00 0.00 3.18
3501 3918 3.264104 TCGTATCCAAAATCCCGACAAC 58.736 45.455 0.00 0.00 0.00 3.32
3502 3919 2.353579 CGTATCCAAAATCCCGACAACC 59.646 50.000 0.00 0.00 0.00 3.77
3503 3920 1.847328 ATCCAAAATCCCGACAACCC 58.153 50.000 0.00 0.00 0.00 4.11
3504 3921 0.774908 TCCAAAATCCCGACAACCCT 59.225 50.000 0.00 0.00 0.00 4.34
3505 3922 1.146152 TCCAAAATCCCGACAACCCTT 59.854 47.619 0.00 0.00 0.00 3.95
3506 3923 1.967779 CCAAAATCCCGACAACCCTTT 59.032 47.619 0.00 0.00 0.00 3.11
3507 3924 2.367241 CCAAAATCCCGACAACCCTTTT 59.633 45.455 0.00 0.00 0.00 2.27
3508 3925 3.181459 CCAAAATCCCGACAACCCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
3536 3953 7.609760 ACTCGAGTATCAAAAATACATTGCA 57.390 32.000 18.46 0.00 33.17 4.08
3537 3954 7.688372 ACTCGAGTATCAAAAATACATTGCAG 58.312 34.615 18.46 0.00 33.17 4.41
3538 3955 7.015226 TCGAGTATCAAAAATACATTGCAGG 57.985 36.000 0.00 0.00 33.17 4.85
3539 3956 5.682862 CGAGTATCAAAAATACATTGCAGGC 59.317 40.000 0.00 0.00 33.17 4.85
3540 3957 6.528537 AGTATCAAAAATACATTGCAGGCA 57.471 33.333 0.00 0.00 0.00 4.75
3541 3958 6.934056 AGTATCAAAAATACATTGCAGGCAA 58.066 32.000 9.38 9.38 40.47 4.52
3542 3959 7.558604 AGTATCAAAAATACATTGCAGGCAAT 58.441 30.769 13.44 13.44 46.35 3.56
3543 3960 8.042515 AGTATCAAAAATACATTGCAGGCAATT 58.957 29.630 16.33 10.71 43.32 2.32
3544 3961 7.690952 ATCAAAAATACATTGCAGGCAATTT 57.309 28.000 16.33 13.03 43.32 1.82
3545 3962 8.789825 ATCAAAAATACATTGCAGGCAATTTA 57.210 26.923 16.33 14.71 43.32 1.40
3546 3963 8.027440 TCAAAAATACATTGCAGGCAATTTAC 57.973 30.769 16.33 0.00 43.32 2.01
3547 3964 7.658982 TCAAAAATACATTGCAGGCAATTTACA 59.341 29.630 16.33 3.45 43.32 2.41
3548 3965 6.966435 AAATACATTGCAGGCAATTTACAC 57.034 33.333 16.33 0.00 43.32 2.90
3549 3966 5.657826 ATACATTGCAGGCAATTTACACA 57.342 34.783 16.33 0.00 43.32 3.72
3550 3967 3.916761 ACATTGCAGGCAATTTACACAG 58.083 40.909 16.33 6.71 43.32 3.66
3551 3968 2.437200 TTGCAGGCAATTTACACAGC 57.563 45.000 1.93 0.00 0.00 4.40
3552 3969 1.326328 TGCAGGCAATTTACACAGCA 58.674 45.000 0.00 0.00 0.00 4.41
3553 3970 1.685517 TGCAGGCAATTTACACAGCAA 59.314 42.857 0.00 0.00 0.00 3.91
3554 3971 2.061028 GCAGGCAATTTACACAGCAAC 58.939 47.619 0.00 0.00 0.00 4.17
3555 3972 2.318578 CAGGCAATTTACACAGCAACG 58.681 47.619 0.00 0.00 0.00 4.10
3556 3973 1.953686 AGGCAATTTACACAGCAACGT 59.046 42.857 0.00 0.00 0.00 3.99
3557 3974 2.050691 GGCAATTTACACAGCAACGTG 58.949 47.619 0.00 0.00 42.81 4.49
3558 3975 1.451651 GCAATTTACACAGCAACGTGC 59.548 47.619 0.00 0.00 45.46 5.34
3567 3984 3.814268 GCAACGTGCGGGCATCAT 61.814 61.111 0.00 0.00 31.71 2.45
3568 3985 2.404789 CAACGTGCGGGCATCATC 59.595 61.111 0.00 0.00 0.00 2.92
3569 3986 3.195002 AACGTGCGGGCATCATCG 61.195 61.111 0.00 0.00 0.00 3.84
3570 3987 3.657448 AACGTGCGGGCATCATCGA 62.657 57.895 8.14 0.00 0.00 3.59
3571 3988 3.333189 CGTGCGGGCATCATCGAG 61.333 66.667 0.00 0.00 0.00 4.04
3572 3989 2.202932 GTGCGGGCATCATCGAGT 60.203 61.111 0.00 0.00 0.00 4.18
3573 3990 1.067416 GTGCGGGCATCATCGAGTA 59.933 57.895 0.00 0.00 0.00 2.59
3574 3991 0.319900 GTGCGGGCATCATCGAGTAT 60.320 55.000 0.00 0.00 0.00 2.12
3575 3992 0.319813 TGCGGGCATCATCGAGTATG 60.320 55.000 5.60 5.60 36.88 2.39
3576 3993 1.630244 GCGGGCATCATCGAGTATGC 61.630 60.000 20.84 20.84 46.20 3.14
3577 3994 0.037882 CGGGCATCATCGAGTATGCT 60.038 55.000 25.29 0.00 46.16 3.79
3578 3995 1.202348 CGGGCATCATCGAGTATGCTA 59.798 52.381 25.29 0.00 46.16 3.49
3579 3996 2.159184 CGGGCATCATCGAGTATGCTAT 60.159 50.000 25.29 0.00 46.16 2.97
3580 3997 3.677148 CGGGCATCATCGAGTATGCTATT 60.677 47.826 25.29 0.00 46.16 1.73
3581 3998 4.440112 CGGGCATCATCGAGTATGCTATTA 60.440 45.833 25.29 0.00 46.16 0.98
3582 3999 5.419542 GGGCATCATCGAGTATGCTATTAA 58.580 41.667 25.29 0.00 46.16 1.40
3583 4000 5.521735 GGGCATCATCGAGTATGCTATTAAG 59.478 44.000 25.29 0.00 46.16 1.85
3584 4001 6.333416 GGCATCATCGAGTATGCTATTAAGA 58.667 40.000 25.29 0.00 46.16 2.10
3585 4002 6.813649 GGCATCATCGAGTATGCTATTAAGAA 59.186 38.462 25.29 0.00 46.16 2.52
3586 4003 7.493971 GGCATCATCGAGTATGCTATTAAGAAT 59.506 37.037 25.29 0.00 46.16 2.40
3587 4004 8.326713 GCATCATCGAGTATGCTATTAAGAATG 58.673 37.037 21.40 1.64 44.08 2.67
3588 4005 9.578439 CATCATCGAGTATGCTATTAAGAATGA 57.422 33.333 0.00 0.00 35.38 2.57
3589 4006 8.972262 TCATCGAGTATGCTATTAAGAATGAC 57.028 34.615 0.00 0.00 35.38 3.06
3590 4007 8.576442 TCATCGAGTATGCTATTAAGAATGACA 58.424 33.333 0.00 0.00 35.38 3.58
3591 4008 8.642885 CATCGAGTATGCTATTAAGAATGACAC 58.357 37.037 0.00 0.00 0.00 3.67
3592 4009 7.145985 TCGAGTATGCTATTAAGAATGACACC 58.854 38.462 0.00 0.00 0.00 4.16
3593 4010 6.088217 CGAGTATGCTATTAAGAATGACACCG 59.912 42.308 0.00 0.00 0.00 4.94
3594 4011 6.223852 AGTATGCTATTAAGAATGACACCGG 58.776 40.000 0.00 0.00 0.00 5.28
3595 4012 3.202906 TGCTATTAAGAATGACACCGGC 58.797 45.455 0.00 0.00 0.00 6.13
3596 4013 3.118408 TGCTATTAAGAATGACACCGGCT 60.118 43.478 0.00 0.00 0.00 5.52
3597 4014 4.100344 TGCTATTAAGAATGACACCGGCTA 59.900 41.667 0.00 0.00 0.00 3.93
3598 4015 5.054477 GCTATTAAGAATGACACCGGCTAA 58.946 41.667 0.00 0.00 0.00 3.09
3599 4016 5.177696 GCTATTAAGAATGACACCGGCTAAG 59.822 44.000 0.00 0.00 0.00 2.18
3600 4017 2.403252 AAGAATGACACCGGCTAAGG 57.597 50.000 0.00 0.00 37.30 2.69
3601 4018 0.107654 AGAATGACACCGGCTAAGGC 60.108 55.000 0.00 0.00 37.82 4.35
3614 4031 3.012934 GCTAAGGCCCTAAAACATCCA 57.987 47.619 0.00 0.00 0.00 3.41
3615 4032 3.361786 GCTAAGGCCCTAAAACATCCAA 58.638 45.455 0.00 0.00 0.00 3.53
3616 4033 3.130516 GCTAAGGCCCTAAAACATCCAAC 59.869 47.826 0.00 0.00 0.00 3.77
3617 4034 2.231716 AGGCCCTAAAACATCCAACC 57.768 50.000 0.00 0.00 0.00 3.77
3618 4035 1.431243 AGGCCCTAAAACATCCAACCA 59.569 47.619 0.00 0.00 0.00 3.67
3619 4036 2.158234 AGGCCCTAAAACATCCAACCAA 60.158 45.455 0.00 0.00 0.00 3.67
3620 4037 2.635427 GGCCCTAAAACATCCAACCAAA 59.365 45.455 0.00 0.00 0.00 3.28
3621 4038 3.556213 GGCCCTAAAACATCCAACCAAAC 60.556 47.826 0.00 0.00 0.00 2.93
3622 4039 3.323691 GCCCTAAAACATCCAACCAAACT 59.676 43.478 0.00 0.00 0.00 2.66
3623 4040 4.799255 GCCCTAAAACATCCAACCAAACTG 60.799 45.833 0.00 0.00 0.00 3.16
3624 4041 4.343814 CCCTAAAACATCCAACCAAACTGT 59.656 41.667 0.00 0.00 0.00 3.55
3625 4042 5.536916 CCCTAAAACATCCAACCAAACTGTA 59.463 40.000 0.00 0.00 0.00 2.74
3626 4043 6.294508 CCCTAAAACATCCAACCAAACTGTAG 60.295 42.308 0.00 0.00 0.00 2.74
3627 4044 6.488683 CCTAAAACATCCAACCAAACTGTAGA 59.511 38.462 0.00 0.00 0.00 2.59
3628 4045 6.976934 AAAACATCCAACCAAACTGTAGAT 57.023 33.333 0.00 0.00 0.00 1.98
3629 4046 5.964958 AACATCCAACCAAACTGTAGATG 57.035 39.130 0.00 0.00 36.20 2.90
3630 4047 4.335416 ACATCCAACCAAACTGTAGATGG 58.665 43.478 0.00 5.85 40.16 3.51
3631 4048 4.042809 ACATCCAACCAAACTGTAGATGGA 59.957 41.667 12.45 9.53 39.59 3.41
3632 4049 4.715534 TCCAACCAAACTGTAGATGGAA 57.284 40.909 12.45 0.00 37.66 3.53
3633 4050 4.394729 TCCAACCAAACTGTAGATGGAAC 58.605 43.478 12.45 0.00 37.66 3.62
3634 4051 3.506067 CCAACCAAACTGTAGATGGAACC 59.494 47.826 12.45 0.00 37.66 3.62
3635 4052 4.141287 CAACCAAACTGTAGATGGAACCA 58.859 43.478 12.45 0.00 37.66 3.67
3636 4053 4.657814 ACCAAACTGTAGATGGAACCAT 57.342 40.909 6.00 6.00 39.69 3.55
3654 4071 3.543680 CATCCCCTTGATGTACGTCTT 57.456 47.619 15.91 0.00 44.91 3.01
3655 4072 3.873910 CATCCCCTTGATGTACGTCTTT 58.126 45.455 15.91 0.00 44.91 2.52
3656 4073 5.018539 CATCCCCTTGATGTACGTCTTTA 57.981 43.478 15.91 1.56 44.91 1.85
3657 4074 4.460948 TCCCCTTGATGTACGTCTTTAC 57.539 45.455 15.91 0.00 0.00 2.01
3658 4075 3.833650 TCCCCTTGATGTACGTCTTTACA 59.166 43.478 15.91 0.00 36.41 2.41
3659 4076 4.081862 TCCCCTTGATGTACGTCTTTACAG 60.082 45.833 15.91 4.72 35.44 2.74
3660 4077 3.617263 CCCTTGATGTACGTCTTTACAGC 59.383 47.826 15.91 0.00 38.58 4.40
3661 4078 3.617263 CCTTGATGTACGTCTTTACAGCC 59.383 47.826 15.91 0.00 37.53 4.85
3662 4079 3.945981 TGATGTACGTCTTTACAGCCA 57.054 42.857 15.91 0.00 37.53 4.75
3663 4080 3.581755 TGATGTACGTCTTTACAGCCAC 58.418 45.455 15.91 0.00 37.53 5.01
3664 4081 2.054687 TGTACGTCTTTACAGCCACG 57.945 50.000 0.00 0.00 38.24 4.94
3665 4082 1.608109 TGTACGTCTTTACAGCCACGA 59.392 47.619 0.00 0.00 36.14 4.35
3666 4083 2.229543 TGTACGTCTTTACAGCCACGAT 59.770 45.455 0.00 0.00 36.14 3.73
3667 4084 1.992170 ACGTCTTTACAGCCACGATC 58.008 50.000 0.00 0.00 36.14 3.69
3668 4085 0.914551 CGTCTTTACAGCCACGATCG 59.085 55.000 14.88 14.88 34.06 3.69
3669 4086 1.466866 CGTCTTTACAGCCACGATCGA 60.467 52.381 24.34 0.00 34.06 3.59
3670 4087 1.918609 GTCTTTACAGCCACGATCGAC 59.081 52.381 24.34 10.72 0.00 4.20
3671 4088 1.816835 TCTTTACAGCCACGATCGACT 59.183 47.619 24.34 12.97 0.00 4.18
3672 4089 2.159421 TCTTTACAGCCACGATCGACTC 60.159 50.000 24.34 9.51 0.00 3.36
3680 4097 2.026734 CGATCGACTCGCATGCCT 59.973 61.111 10.26 0.00 41.14 4.75
3681 4098 2.013483 CGATCGACTCGCATGCCTC 61.013 63.158 10.26 3.32 41.14 4.70
3682 4099 1.663074 GATCGACTCGCATGCCTCC 60.663 63.158 13.15 0.00 0.00 4.30
3683 4100 2.081425 GATCGACTCGCATGCCTCCT 62.081 60.000 13.15 0.00 0.00 3.69
3684 4101 1.680522 ATCGACTCGCATGCCTCCTT 61.681 55.000 13.15 0.00 0.00 3.36
3685 4102 2.169789 CGACTCGCATGCCTCCTTG 61.170 63.158 13.15 0.00 0.00 3.61
3686 4103 1.219124 GACTCGCATGCCTCCTTGA 59.781 57.895 13.15 0.94 0.00 3.02
3687 4104 0.179062 GACTCGCATGCCTCCTTGAT 60.179 55.000 13.15 0.00 0.00 2.57
3688 4105 1.069204 GACTCGCATGCCTCCTTGATA 59.931 52.381 13.15 0.00 0.00 2.15
3689 4106 1.696336 ACTCGCATGCCTCCTTGATAT 59.304 47.619 13.15 0.00 0.00 1.63
3690 4107 2.899900 ACTCGCATGCCTCCTTGATATA 59.100 45.455 13.15 0.00 0.00 0.86
3691 4108 3.517100 ACTCGCATGCCTCCTTGATATAT 59.483 43.478 13.15 0.00 0.00 0.86
3692 4109 3.865446 TCGCATGCCTCCTTGATATATG 58.135 45.455 13.15 0.00 0.00 1.78
3693 4110 2.353889 CGCATGCCTCCTTGATATATGC 59.646 50.000 13.15 0.00 36.88 3.14
3694 4111 2.686915 GCATGCCTCCTTGATATATGCC 59.313 50.000 6.36 0.00 34.85 4.40
3695 4112 3.624205 GCATGCCTCCTTGATATATGCCT 60.624 47.826 6.36 0.00 34.85 4.75
3696 4113 3.988976 TGCCTCCTTGATATATGCCTC 57.011 47.619 0.00 0.00 0.00 4.70
3697 4114 2.234661 TGCCTCCTTGATATATGCCTCG 59.765 50.000 0.00 0.00 0.00 4.63
3698 4115 2.234908 GCCTCCTTGATATATGCCTCGT 59.765 50.000 0.00 0.00 0.00 4.18
3699 4116 3.677424 GCCTCCTTGATATATGCCTCGTC 60.677 52.174 0.00 0.00 0.00 4.20
3700 4117 3.118956 CCTCCTTGATATATGCCTCGTCC 60.119 52.174 0.00 0.00 0.00 4.79
3701 4118 3.506398 TCCTTGATATATGCCTCGTCCA 58.494 45.455 0.00 0.00 0.00 4.02
3702 4119 3.511540 TCCTTGATATATGCCTCGTCCAG 59.488 47.826 0.00 0.00 0.00 3.86
3703 4120 3.368843 CCTTGATATATGCCTCGTCCAGG 60.369 52.174 0.00 0.00 46.82 4.45
3704 4121 2.179427 TGATATATGCCTCGTCCAGGG 58.821 52.381 0.00 0.00 43.70 4.45
3705 4122 1.482593 GATATATGCCTCGTCCAGGGG 59.517 57.143 0.00 0.00 43.70 4.79
3706 4123 0.485543 TATATGCCTCGTCCAGGGGA 59.514 55.000 0.00 0.00 46.06 4.81
3707 4124 0.833834 ATATGCCTCGTCCAGGGGAG 60.834 60.000 2.29 2.29 46.06 4.30
3708 4125 1.944896 TATGCCTCGTCCAGGGGAGA 61.945 60.000 9.39 0.00 46.06 3.71
3709 4126 2.683933 GCCTCGTCCAGGGGAGAA 60.684 66.667 9.39 0.00 46.06 2.87
3710 4127 3.020237 GCCTCGTCCAGGGGAGAAC 62.020 68.421 9.39 0.00 46.06 3.01
3711 4128 1.609501 CCTCGTCCAGGGGAGAACA 60.610 63.158 9.39 0.00 46.06 3.18
3712 4129 0.978146 CCTCGTCCAGGGGAGAACAT 60.978 60.000 9.39 0.00 46.06 2.71
3713 4130 0.905357 CTCGTCCAGGGGAGAACATT 59.095 55.000 3.02 0.00 29.39 2.71
3714 4131 1.279271 CTCGTCCAGGGGAGAACATTT 59.721 52.381 3.02 0.00 29.39 2.32
3715 4132 1.278127 TCGTCCAGGGGAGAACATTTC 59.722 52.381 0.00 0.00 29.39 2.17
3716 4133 1.679032 CGTCCAGGGGAGAACATTTCC 60.679 57.143 0.00 0.00 29.39 3.13
3717 4134 1.636003 GTCCAGGGGAGAACATTTCCT 59.364 52.381 0.00 0.00 35.01 3.36
3718 4135 2.844348 GTCCAGGGGAGAACATTTCCTA 59.156 50.000 0.00 0.00 35.01 2.94
3719 4136 3.115390 TCCAGGGGAGAACATTTCCTAG 58.885 50.000 0.00 0.00 35.01 3.02
3720 4137 3.115390 CCAGGGGAGAACATTTCCTAGA 58.885 50.000 0.00 0.00 35.01 2.43
3721 4138 3.718956 CCAGGGGAGAACATTTCCTAGAT 59.281 47.826 0.00 0.00 35.01 1.98
3722 4139 4.907875 CCAGGGGAGAACATTTCCTAGATA 59.092 45.833 0.00 0.00 35.01 1.98
3723 4140 5.549619 CCAGGGGAGAACATTTCCTAGATAT 59.450 44.000 0.00 0.00 35.01 1.63
3724 4141 6.730977 CCAGGGGAGAACATTTCCTAGATATA 59.269 42.308 0.00 0.00 35.01 0.86
3725 4142 7.404396 CCAGGGGAGAACATTTCCTAGATATAT 59.596 40.741 0.00 0.00 35.01 0.86
3726 4143 8.263640 CAGGGGAGAACATTTCCTAGATATATG 58.736 40.741 0.00 0.00 35.01 1.78
3727 4144 7.404396 AGGGGAGAACATTTCCTAGATATATGG 59.596 40.741 0.00 0.00 35.01 2.74
3728 4145 7.051000 GGGAGAACATTTCCTAGATATATGGC 58.949 42.308 0.00 0.00 35.01 4.40
3729 4146 7.051000 GGAGAACATTTCCTAGATATATGGCC 58.949 42.308 0.00 0.00 0.00 5.36
3730 4147 7.311297 GGAGAACATTTCCTAGATATATGGCCA 60.311 40.741 8.56 8.56 0.00 5.36
3731 4148 8.167691 AGAACATTTCCTAGATATATGGCCAT 57.832 34.615 24.45 24.45 0.00 4.40
3732 4149 9.284131 AGAACATTTCCTAGATATATGGCCATA 57.716 33.333 27.36 27.36 0.00 2.74
3733 4150 9.553064 GAACATTTCCTAGATATATGGCCATAG 57.447 37.037 28.58 16.55 0.00 2.23
3734 4151 7.512992 ACATTTCCTAGATATATGGCCATAGC 58.487 38.462 28.58 19.90 38.76 2.97
3735 4152 7.127801 ACATTTCCTAGATATATGGCCATAGCA 59.872 37.037 28.58 19.58 42.56 3.49
3736 4153 6.485830 TTCCTAGATATATGGCCATAGCAC 57.514 41.667 28.58 20.45 42.56 4.40
3737 4154 4.901849 TCCTAGATATATGGCCATAGCACC 59.098 45.833 28.58 17.39 42.56 5.01
3738 4155 3.827008 AGATATATGGCCATAGCACCG 57.173 47.619 28.58 0.00 42.56 4.94
3739 4156 3.374764 AGATATATGGCCATAGCACCGA 58.625 45.455 28.58 8.11 42.56 4.69
3740 4157 3.133003 AGATATATGGCCATAGCACCGAC 59.867 47.826 28.58 15.32 42.56 4.79
3741 4158 0.037326 ATATGGCCATAGCACCGACG 60.037 55.000 28.58 0.00 42.56 5.12
3742 4159 1.110518 TATGGCCATAGCACCGACGA 61.111 55.000 21.94 0.00 42.56 4.20
3743 4160 1.758440 ATGGCCATAGCACCGACGAT 61.758 55.000 19.18 0.00 42.56 3.73
3744 4161 1.227556 GGCCATAGCACCGACGATT 60.228 57.895 0.00 0.00 42.56 3.34
3745 4162 1.222115 GGCCATAGCACCGACGATTC 61.222 60.000 0.00 0.00 42.56 2.52
3746 4163 0.529773 GCCATAGCACCGACGATTCA 60.530 55.000 0.00 0.00 39.53 2.57
3747 4164 1.209128 CCATAGCACCGACGATTCAC 58.791 55.000 0.00 0.00 0.00 3.18
3748 4165 1.202417 CCATAGCACCGACGATTCACT 60.202 52.381 0.00 0.00 0.00 3.41
3749 4166 2.540515 CATAGCACCGACGATTCACTT 58.459 47.619 0.00 0.00 0.00 3.16
3750 4167 2.736144 TAGCACCGACGATTCACTTT 57.264 45.000 0.00 0.00 0.00 2.66
3751 4168 1.878953 AGCACCGACGATTCACTTTT 58.121 45.000 0.00 0.00 0.00 2.27
3752 4169 3.034721 AGCACCGACGATTCACTTTTA 57.965 42.857 0.00 0.00 0.00 1.52
3753 4170 2.735134 AGCACCGACGATTCACTTTTAC 59.265 45.455 0.00 0.00 0.00 2.01
3754 4171 2.477375 GCACCGACGATTCACTTTTACA 59.523 45.455 0.00 0.00 0.00 2.41
3755 4172 3.423123 GCACCGACGATTCACTTTTACAG 60.423 47.826 0.00 0.00 0.00 2.74
3756 4173 3.739300 CACCGACGATTCACTTTTACAGT 59.261 43.478 0.00 0.00 35.35 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 1.691434 TGCCAAAAAGGTTCCCATCAC 59.309 47.619 0.00 0.00 40.61 3.06
188 189 2.094100 TCATGCCAAAAAGGTTCCCA 57.906 45.000 0.00 0.00 40.61 4.37
258 259 7.105588 GGCTTAAATTTCTCCAACCATTTGAT 58.894 34.615 0.00 0.00 34.24 2.57
278 279 4.798882 TCTCAACTTCCCTTTTTGGCTTA 58.201 39.130 0.00 0.00 0.00 3.09
325 326 8.417106 TGGACAAACATAAGCAAAAATACAAGA 58.583 29.630 0.00 0.00 0.00 3.02
429 430 0.743345 GAATGACACCCTACGCCCAC 60.743 60.000 0.00 0.00 0.00 4.61
528 529 0.324943 TCTTGGTAGAGGCAGCCAAC 59.675 55.000 15.80 8.65 37.36 3.77
650 651 9.554724 GTACATTCAACATTAATGTGTTACCTG 57.445 33.333 21.46 14.31 44.94 4.00
714 715 4.518211 TCCCTCCGTTCTATAATTCTCGTC 59.482 45.833 0.00 0.00 0.00 4.20
717 718 6.716173 ACTACTCCCTCCGTTCTATAATTCTC 59.284 42.308 0.00 0.00 0.00 2.87
761 762 4.277423 ACCACATTTTAAGTCCGAAACAGG 59.723 41.667 0.00 0.00 0.00 4.00
792 793 6.068853 AGGGTCAGGAAAAGATCATAAATCCA 60.069 38.462 0.00 0.00 0.00 3.41
859 965 5.140747 TGCAAGAGAAGAAAGAGGACTAC 57.859 43.478 0.00 0.00 0.00 2.73
964 1071 7.094762 GGAACTGGAAAGACATAGTAAACTTGG 60.095 40.741 0.00 0.00 0.00 3.61
1149 1256 4.324267 AGGCTAAACAGCTTACGTGAAAT 58.676 39.130 0.00 0.00 34.73 2.17
1241 1372 4.349636 TCTGTCTATGTCCCCAAGTTGAAA 59.650 41.667 3.87 0.00 0.00 2.69
1309 1440 3.365666 GCATCAACTCACCACTGACAATG 60.366 47.826 0.00 0.00 0.00 2.82
1334 1465 1.067425 TGCAACGCAGTACCGACTTAT 60.067 47.619 0.00 0.00 45.00 1.73
1712 1863 7.148018 GCAATCTTGTTTCCATCTTTAGGATCA 60.148 37.037 0.00 0.00 34.56 2.92
1769 1920 6.655003 TGAGACTTAAGCAGAAAATGTAAGGG 59.345 38.462 1.29 0.00 0.00 3.95
2018 2169 2.234908 AGTCAGTTAGTCTCCCATGTGC 59.765 50.000 0.00 0.00 0.00 4.57
2112 2263 4.879545 TCAAATAAGATTAACCCACGGCTC 59.120 41.667 0.00 0.00 0.00 4.70
2115 2266 6.693315 ACATCAAATAAGATTAACCCACGG 57.307 37.500 0.00 0.00 0.00 4.94
2675 2900 0.178947 AGATTTTTCCCCGTGGCCAA 60.179 50.000 7.24 0.00 0.00 4.52
2762 2988 1.131126 CGCAAATTCAACGGAGCAGAT 59.869 47.619 0.00 0.00 0.00 2.90
2781 3007 0.798776 GGTTCAACACATGGAGAGCG 59.201 55.000 0.00 0.00 0.00 5.03
2786 3012 3.360867 ACAAACAGGTTCAACACATGGA 58.639 40.909 0.00 0.00 41.78 3.41
2835 3062 4.646492 GGTCCAAACATTGAGATATGGCTT 59.354 41.667 0.00 0.00 0.00 4.35
2976 3205 5.529800 ACAATTACTACACTCCGTTTGCTTT 59.470 36.000 0.00 0.00 0.00 3.51
3203 3611 1.065997 AAACACCCACCCCTACAGCT 61.066 55.000 0.00 0.00 0.00 4.24
3247 3664 7.175816 TGCTATACAAGGCAGAACACAAATTAA 59.824 33.333 0.00 0.00 34.22 1.40
3282 3699 0.250640 CAGCACAAGAGGCAAGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
3297 3714 2.595009 TTACCGCACACACACCAGCA 62.595 55.000 0.00 0.00 0.00 4.41
3298 3715 1.234615 ATTACCGCACACACACCAGC 61.235 55.000 0.00 0.00 0.00 4.85
3299 3716 2.087501 TATTACCGCACACACACCAG 57.912 50.000 0.00 0.00 0.00 4.00
3302 3719 7.646446 TGATTATATATTACCGCACACACAC 57.354 36.000 0.00 0.00 0.00 3.82
3303 3720 8.840833 ATTGATTATATATTACCGCACACACA 57.159 30.769 0.00 0.00 0.00 3.72
3321 3738 9.928618 TTACTATGGGGAACATGAAATTGATTA 57.071 29.630 0.00 0.00 40.82 1.75
3322 3739 8.695456 GTTACTATGGGGAACATGAAATTGATT 58.305 33.333 0.00 0.00 40.82 2.57
3323 3740 8.061304 AGTTACTATGGGGAACATGAAATTGAT 58.939 33.333 0.00 0.00 40.82 2.57
3324 3741 7.339212 CAGTTACTATGGGGAACATGAAATTGA 59.661 37.037 0.00 0.00 40.82 2.57
3325 3742 7.339212 TCAGTTACTATGGGGAACATGAAATTG 59.661 37.037 0.00 0.00 40.82 2.32
3326 3743 7.339466 GTCAGTTACTATGGGGAACATGAAATT 59.661 37.037 0.00 0.00 40.82 1.82
3327 3744 6.828785 GTCAGTTACTATGGGGAACATGAAAT 59.171 38.462 0.00 0.00 40.82 2.17
3328 3745 6.177610 GTCAGTTACTATGGGGAACATGAAA 58.822 40.000 0.00 0.00 40.82 2.69
3329 3746 5.249622 TGTCAGTTACTATGGGGAACATGAA 59.750 40.000 0.00 0.00 40.82 2.57
3330 3747 4.780554 TGTCAGTTACTATGGGGAACATGA 59.219 41.667 0.00 0.00 40.82 3.07
3331 3748 4.876107 GTGTCAGTTACTATGGGGAACATG 59.124 45.833 0.00 0.00 40.82 3.21
3332 3749 4.534500 TGTGTCAGTTACTATGGGGAACAT 59.466 41.667 0.00 0.00 43.68 2.71
3333 3750 3.904965 TGTGTCAGTTACTATGGGGAACA 59.095 43.478 0.00 0.00 0.00 3.18
3334 3751 4.546829 TGTGTCAGTTACTATGGGGAAC 57.453 45.455 0.00 0.00 0.00 3.62
3335 3752 4.534500 ACATGTGTCAGTTACTATGGGGAA 59.466 41.667 0.00 0.00 31.63 3.97
3336 3753 4.101114 ACATGTGTCAGTTACTATGGGGA 58.899 43.478 0.00 0.00 31.63 4.81
3337 3754 4.442706 GACATGTGTCAGTTACTATGGGG 58.557 47.826 1.15 0.00 44.18 4.96
3350 3767 5.869753 ATCTTAAAGCTGTGACATGTGTC 57.130 39.130 1.15 6.21 44.97 3.67
3351 3768 6.039717 ACAAATCTTAAAGCTGTGACATGTGT 59.960 34.615 1.15 0.00 0.00 3.72
3352 3769 6.361481 CACAAATCTTAAAGCTGTGACATGTG 59.639 38.462 1.15 0.00 39.80 3.21
3353 3770 6.441274 CACAAATCTTAAAGCTGTGACATGT 58.559 36.000 0.00 0.00 39.80 3.21
3354 3771 5.344128 GCACAAATCTTAAAGCTGTGACATG 59.656 40.000 4.76 0.00 39.80 3.21
3355 3772 5.464168 GCACAAATCTTAAAGCTGTGACAT 58.536 37.500 4.76 0.00 39.80 3.06
3356 3773 4.554526 CGCACAAATCTTAAAGCTGTGACA 60.555 41.667 4.76 0.00 39.80 3.58
3357 3774 3.908382 CGCACAAATCTTAAAGCTGTGAC 59.092 43.478 4.76 0.00 39.80 3.67
3358 3775 3.563808 ACGCACAAATCTTAAAGCTGTGA 59.436 39.130 4.76 0.00 39.80 3.58
3359 3776 3.665409 CACGCACAAATCTTAAAGCTGTG 59.335 43.478 0.00 0.00 40.26 3.66
3360 3777 3.563808 TCACGCACAAATCTTAAAGCTGT 59.436 39.130 0.00 0.00 0.00 4.40
3361 3778 4.145876 TCACGCACAAATCTTAAAGCTG 57.854 40.909 0.00 0.00 0.00 4.24
3362 3779 4.829064 TTCACGCACAAATCTTAAAGCT 57.171 36.364 0.00 0.00 0.00 3.74
3363 3780 6.143758 TCAATTTCACGCACAAATCTTAAAGC 59.856 34.615 0.00 0.00 0.00 3.51
3364 3781 7.621832 TCAATTTCACGCACAAATCTTAAAG 57.378 32.000 0.00 0.00 0.00 1.85
3365 3782 7.993821 TTCAATTTCACGCACAAATCTTAAA 57.006 28.000 0.00 0.00 0.00 1.52
3366 3783 7.306515 GCTTTCAATTTCACGCACAAATCTTAA 60.307 33.333 0.00 0.00 0.00 1.85
3367 3784 6.143758 GCTTTCAATTTCACGCACAAATCTTA 59.856 34.615 0.00 0.00 0.00 2.10
3368 3785 5.050837 GCTTTCAATTTCACGCACAAATCTT 60.051 36.000 0.00 0.00 0.00 2.40
3369 3786 4.445385 GCTTTCAATTTCACGCACAAATCT 59.555 37.500 0.00 0.00 0.00 2.40
3370 3787 4.208873 TGCTTTCAATTTCACGCACAAATC 59.791 37.500 0.00 0.00 0.00 2.17
3371 3788 4.025813 GTGCTTTCAATTTCACGCACAAAT 60.026 37.500 12.29 0.00 45.02 2.32
3372 3789 3.305629 GTGCTTTCAATTTCACGCACAAA 59.694 39.130 12.29 0.00 45.02 2.83
3373 3790 2.857152 GTGCTTTCAATTTCACGCACAA 59.143 40.909 12.29 0.00 45.02 3.33
3374 3791 2.458951 GTGCTTTCAATTTCACGCACA 58.541 42.857 12.29 0.00 45.02 4.57
3375 3792 2.731217 AGTGCTTTCAATTTCACGCAC 58.269 42.857 10.19 10.19 45.77 5.34
3376 3793 3.812609 TCTAGTGCTTTCAATTTCACGCA 59.187 39.130 0.00 0.00 34.84 5.24
3377 3794 4.152402 TCTCTAGTGCTTTCAATTTCACGC 59.848 41.667 0.00 0.00 34.84 5.34
3378 3795 5.669848 GCTCTCTAGTGCTTTCAATTTCACG 60.670 44.000 0.00 0.00 34.84 4.35
3379 3796 5.626211 GCTCTCTAGTGCTTTCAATTTCAC 58.374 41.667 0.00 0.00 0.00 3.18
3380 3797 4.389992 CGCTCTCTAGTGCTTTCAATTTCA 59.610 41.667 2.90 0.00 32.84 2.69
3381 3798 4.390297 ACGCTCTCTAGTGCTTTCAATTTC 59.610 41.667 2.90 0.00 36.66 2.17
3382 3799 4.319177 ACGCTCTCTAGTGCTTTCAATTT 58.681 39.130 2.90 0.00 36.66 1.82
3383 3800 3.931578 ACGCTCTCTAGTGCTTTCAATT 58.068 40.909 2.90 0.00 36.66 2.32
3384 3801 3.601443 ACGCTCTCTAGTGCTTTCAAT 57.399 42.857 2.90 0.00 36.66 2.57
3385 3802 3.386768 AACGCTCTCTAGTGCTTTCAA 57.613 42.857 2.90 0.00 36.66 2.69
3386 3803 3.059884 CAAACGCTCTCTAGTGCTTTCA 58.940 45.455 2.90 0.00 36.66 2.69
3387 3804 2.159774 GCAAACGCTCTCTAGTGCTTTC 60.160 50.000 2.90 0.00 36.66 2.62
3388 3805 1.801178 GCAAACGCTCTCTAGTGCTTT 59.199 47.619 2.90 0.00 36.66 3.51
3389 3806 1.001406 AGCAAACGCTCTCTAGTGCTT 59.999 47.619 2.90 0.00 39.19 3.91
3390 3807 0.605589 AGCAAACGCTCTCTAGTGCT 59.394 50.000 2.90 0.00 33.18 4.40
3391 3808 3.129792 AGCAAACGCTCTCTAGTGC 57.870 52.632 0.00 0.00 33.18 4.40
3412 3829 4.698304 TGACGTTTTCTGAGAGTGGTTTTT 59.302 37.500 0.00 0.00 0.00 1.94
3413 3830 4.258543 TGACGTTTTCTGAGAGTGGTTTT 58.741 39.130 0.00 0.00 0.00 2.43
3414 3831 3.869065 TGACGTTTTCTGAGAGTGGTTT 58.131 40.909 0.00 0.00 0.00 3.27
3415 3832 3.536956 TGACGTTTTCTGAGAGTGGTT 57.463 42.857 0.00 0.00 0.00 3.67
3416 3833 3.536956 TTGACGTTTTCTGAGAGTGGT 57.463 42.857 0.00 0.00 0.00 4.16
3417 3834 4.752101 AGAATTGACGTTTTCTGAGAGTGG 59.248 41.667 8.11 0.00 31.15 4.00
3418 3835 5.914085 AGAATTGACGTTTTCTGAGAGTG 57.086 39.130 8.11 0.00 31.15 3.51
3419 3836 9.141400 GTTATAGAATTGACGTTTTCTGAGAGT 57.859 33.333 15.50 4.17 34.22 3.24
3420 3837 9.140286 TGTTATAGAATTGACGTTTTCTGAGAG 57.860 33.333 15.50 0.00 34.22 3.20
3421 3838 9.653287 ATGTTATAGAATTGACGTTTTCTGAGA 57.347 29.630 15.50 1.77 34.22 3.27
3427 3844 9.887406 ACGAAAATGTTATAGAATTGACGTTTT 57.113 25.926 5.30 5.30 41.37 2.43
3449 3866 9.316730 GGTAACTGAAACCACATATAATACGAA 57.683 33.333 0.00 0.00 36.96 3.85
3450 3867 8.476447 TGGTAACTGAAACCACATATAATACGA 58.524 33.333 0.00 0.00 42.10 3.43
3451 3868 8.651391 TGGTAACTGAAACCACATATAATACG 57.349 34.615 2.48 0.00 42.10 3.06
3462 3879 8.174737 TGGATACGAAAATGGTAACTGAAACCA 61.175 37.037 8.01 8.01 46.44 3.67
3463 3880 6.149807 TGGATACGAAAATGGTAACTGAAACC 59.850 38.462 0.00 0.00 42.51 3.27
3464 3881 7.136289 TGGATACGAAAATGGTAACTGAAAC 57.864 36.000 0.00 0.00 42.51 2.78
3465 3882 7.747155 TTGGATACGAAAATGGTAACTGAAA 57.253 32.000 0.00 0.00 42.51 2.69
3466 3883 7.747155 TTTGGATACGAAAATGGTAACTGAA 57.253 32.000 0.00 0.00 36.89 3.02
3467 3884 7.747155 TTTTGGATACGAAAATGGTAACTGA 57.253 32.000 0.00 0.00 46.99 3.41
3479 3896 3.613494 TGTCGGGATTTTGGATACGAA 57.387 42.857 0.00 0.00 42.51 3.85
3480 3897 3.264104 GTTGTCGGGATTTTGGATACGA 58.736 45.455 0.00 0.00 42.51 3.43
3481 3898 2.353579 GGTTGTCGGGATTTTGGATACG 59.646 50.000 0.00 0.00 42.51 3.06
3482 3899 2.686405 GGGTTGTCGGGATTTTGGATAC 59.314 50.000 0.00 0.00 0.00 2.24
3483 3900 2.578940 AGGGTTGTCGGGATTTTGGATA 59.421 45.455 0.00 0.00 0.00 2.59
3484 3901 1.357761 AGGGTTGTCGGGATTTTGGAT 59.642 47.619 0.00 0.00 0.00 3.41
3485 3902 0.774908 AGGGTTGTCGGGATTTTGGA 59.225 50.000 0.00 0.00 0.00 3.53
3486 3903 1.627864 AAGGGTTGTCGGGATTTTGG 58.372 50.000 0.00 0.00 0.00 3.28
3487 3904 3.744238 AAAAGGGTTGTCGGGATTTTG 57.256 42.857 0.00 0.00 0.00 2.44
3510 3927 9.325198 TGCAATGTATTTTTGATACTCGAGTAT 57.675 29.630 32.86 32.86 43.38 2.12
3511 3928 8.710835 TGCAATGTATTTTTGATACTCGAGTA 57.289 30.769 26.55 26.55 34.67 2.59
3512 3929 7.201644 CCTGCAATGTATTTTTGATACTCGAGT 60.202 37.037 23.66 23.66 0.00 4.18
3513 3930 7.128331 CCTGCAATGTATTTTTGATACTCGAG 58.872 38.462 11.84 11.84 0.00 4.04
3514 3931 6.458206 GCCTGCAATGTATTTTTGATACTCGA 60.458 38.462 0.00 0.00 0.00 4.04
3515 3932 5.682862 GCCTGCAATGTATTTTTGATACTCG 59.317 40.000 0.00 0.00 0.00 4.18
3516 3933 6.563422 TGCCTGCAATGTATTTTTGATACTC 58.437 36.000 0.00 0.00 0.00 2.59
3517 3934 6.528537 TGCCTGCAATGTATTTTTGATACT 57.471 33.333 0.00 0.00 0.00 2.12
3518 3935 7.775397 ATTGCCTGCAATGTATTTTTGATAC 57.225 32.000 16.07 0.00 44.05 2.24
3519 3936 8.789825 AAATTGCCTGCAATGTATTTTTGATA 57.210 26.923 17.37 0.00 44.86 2.15
3520 3937 7.690952 AAATTGCCTGCAATGTATTTTTGAT 57.309 28.000 17.37 0.00 44.86 2.57
3521 3938 7.658982 TGTAAATTGCCTGCAATGTATTTTTGA 59.341 29.630 17.37 0.00 44.86 2.69
3522 3939 7.745594 GTGTAAATTGCCTGCAATGTATTTTTG 59.254 33.333 17.37 0.00 44.86 2.44
3523 3940 7.443575 TGTGTAAATTGCCTGCAATGTATTTTT 59.556 29.630 17.37 10.28 44.86 1.94
3524 3941 6.933521 TGTGTAAATTGCCTGCAATGTATTTT 59.066 30.769 17.37 10.91 44.86 1.82
3525 3942 6.462500 TGTGTAAATTGCCTGCAATGTATTT 58.538 32.000 17.37 11.23 44.86 1.40
3526 3943 6.035368 TGTGTAAATTGCCTGCAATGTATT 57.965 33.333 17.37 10.89 44.86 1.89
3527 3944 5.653507 CTGTGTAAATTGCCTGCAATGTAT 58.346 37.500 17.37 9.89 44.86 2.29
3528 3945 4.617995 GCTGTGTAAATTGCCTGCAATGTA 60.618 41.667 17.37 13.55 44.86 2.29
3529 3946 3.861886 GCTGTGTAAATTGCCTGCAATGT 60.862 43.478 17.37 14.56 44.86 2.71
3530 3947 2.669434 GCTGTGTAAATTGCCTGCAATG 59.331 45.455 17.37 5.16 44.86 2.82
3532 3949 1.685517 TGCTGTGTAAATTGCCTGCAA 59.314 42.857 7.06 7.06 40.47 4.08
3533 3950 1.326328 TGCTGTGTAAATTGCCTGCA 58.674 45.000 0.00 0.00 0.00 4.41
3534 3951 2.061028 GTTGCTGTGTAAATTGCCTGC 58.939 47.619 0.00 0.00 0.00 4.85
3535 3952 2.287547 ACGTTGCTGTGTAAATTGCCTG 60.288 45.455 0.00 0.00 0.00 4.85
3536 3953 1.953686 ACGTTGCTGTGTAAATTGCCT 59.046 42.857 0.00 0.00 0.00 4.75
3537 3954 2.050691 CACGTTGCTGTGTAAATTGCC 58.949 47.619 0.00 0.00 35.12 4.52
3538 3955 1.451651 GCACGTTGCTGTGTAAATTGC 59.548 47.619 0.00 0.00 40.96 3.56
3539 3956 1.708158 CGCACGTTGCTGTGTAAATTG 59.292 47.619 8.07 0.00 42.25 2.32
3540 3957 1.334599 CCGCACGTTGCTGTGTAAATT 60.335 47.619 8.07 0.00 42.25 1.82
3541 3958 0.237235 CCGCACGTTGCTGTGTAAAT 59.763 50.000 8.07 0.00 42.25 1.40
3542 3959 1.644372 CCGCACGTTGCTGTGTAAA 59.356 52.632 8.07 0.00 42.25 2.01
3543 3960 2.248135 CCCGCACGTTGCTGTGTAA 61.248 57.895 8.07 0.00 42.25 2.41
3544 3961 2.663520 CCCGCACGTTGCTGTGTA 60.664 61.111 8.07 0.00 42.25 2.90
3548 3965 4.465512 GATGCCCGCACGTTGCTG 62.466 66.667 8.07 2.37 42.25 4.41
3550 3967 3.739782 GATGATGCCCGCACGTTGC 62.740 63.158 0.00 0.00 40.69 4.17
3551 3968 2.404789 GATGATGCCCGCACGTTG 59.595 61.111 0.00 0.00 0.00 4.10
3552 3969 3.195002 CGATGATGCCCGCACGTT 61.195 61.111 0.00 0.00 0.00 3.99
3553 3970 4.141965 TCGATGATGCCCGCACGT 62.142 61.111 0.00 0.00 0.00 4.49
3554 3971 2.677573 TACTCGATGATGCCCGCACG 62.678 60.000 0.00 0.00 0.00 5.34
3555 3972 0.319900 ATACTCGATGATGCCCGCAC 60.320 55.000 0.00 0.00 0.00 5.34
3556 3973 0.319813 CATACTCGATGATGCCCGCA 60.320 55.000 0.00 0.00 37.82 5.69
3557 3974 1.630244 GCATACTCGATGATGCCCGC 61.630 60.000 16.92 0.00 42.18 6.13
3558 3975 2.449548 GCATACTCGATGATGCCCG 58.550 57.895 16.92 0.00 42.18 6.13
3562 3979 9.578439 TCATTCTTAATAGCATACTCGATGATG 57.422 33.333 2.98 2.98 37.82 3.07
3563 3980 9.579768 GTCATTCTTAATAGCATACTCGATGAT 57.420 33.333 0.00 0.00 37.82 2.45
3564 3981 8.576442 TGTCATTCTTAATAGCATACTCGATGA 58.424 33.333 0.00 0.00 37.82 2.92
3565 3982 8.642885 GTGTCATTCTTAATAGCATACTCGATG 58.357 37.037 0.00 0.00 38.73 3.84
3566 3983 7.815068 GGTGTCATTCTTAATAGCATACTCGAT 59.185 37.037 0.00 0.00 0.00 3.59
3567 3984 7.145985 GGTGTCATTCTTAATAGCATACTCGA 58.854 38.462 0.00 0.00 0.00 4.04
3568 3985 6.088217 CGGTGTCATTCTTAATAGCATACTCG 59.912 42.308 0.00 0.00 0.00 4.18
3569 3986 6.366332 CCGGTGTCATTCTTAATAGCATACTC 59.634 42.308 0.00 0.00 0.00 2.59
3570 3987 6.223852 CCGGTGTCATTCTTAATAGCATACT 58.776 40.000 0.00 0.00 0.00 2.12
3571 3988 5.107065 GCCGGTGTCATTCTTAATAGCATAC 60.107 44.000 1.90 0.00 0.00 2.39
3572 3989 4.994852 GCCGGTGTCATTCTTAATAGCATA 59.005 41.667 1.90 0.00 0.00 3.14
3573 3990 3.815401 GCCGGTGTCATTCTTAATAGCAT 59.185 43.478 1.90 0.00 0.00 3.79
3574 3991 3.118408 AGCCGGTGTCATTCTTAATAGCA 60.118 43.478 1.90 0.00 0.00 3.49
3575 3992 3.467803 AGCCGGTGTCATTCTTAATAGC 58.532 45.455 1.90 0.00 0.00 2.97
3576 3993 5.696724 CCTTAGCCGGTGTCATTCTTAATAG 59.303 44.000 1.90 0.00 0.00 1.73
3577 3994 5.607477 CCTTAGCCGGTGTCATTCTTAATA 58.393 41.667 1.90 0.00 0.00 0.98
3578 3995 4.451900 CCTTAGCCGGTGTCATTCTTAAT 58.548 43.478 1.90 0.00 0.00 1.40
3579 3996 3.869065 CCTTAGCCGGTGTCATTCTTAA 58.131 45.455 1.90 0.00 0.00 1.85
3580 3997 2.419574 GCCTTAGCCGGTGTCATTCTTA 60.420 50.000 1.90 0.00 0.00 2.10
3581 3998 1.679032 GCCTTAGCCGGTGTCATTCTT 60.679 52.381 1.90 0.00 0.00 2.52
3582 3999 0.107654 GCCTTAGCCGGTGTCATTCT 60.108 55.000 1.90 0.00 0.00 2.40
3583 4000 2.394604 GCCTTAGCCGGTGTCATTC 58.605 57.895 1.90 0.00 0.00 2.67
3584 4001 4.637771 GCCTTAGCCGGTGTCATT 57.362 55.556 1.90 0.00 0.00 2.57
3594 4011 3.012934 TGGATGTTTTAGGGCCTTAGC 57.987 47.619 13.45 3.02 38.76 3.09
3595 4012 3.699538 GGTTGGATGTTTTAGGGCCTTAG 59.300 47.826 13.45 0.00 0.00 2.18
3596 4013 3.076182 TGGTTGGATGTTTTAGGGCCTTA 59.924 43.478 13.45 0.00 0.00 2.69
3597 4014 2.158234 TGGTTGGATGTTTTAGGGCCTT 60.158 45.455 13.45 0.00 0.00 4.35
3598 4015 1.431243 TGGTTGGATGTTTTAGGGCCT 59.569 47.619 12.58 12.58 0.00 5.19
3599 4016 1.931635 TGGTTGGATGTTTTAGGGCC 58.068 50.000 0.00 0.00 0.00 5.80
3600 4017 3.323691 AGTTTGGTTGGATGTTTTAGGGC 59.676 43.478 0.00 0.00 0.00 5.19
3601 4018 4.343814 ACAGTTTGGTTGGATGTTTTAGGG 59.656 41.667 0.00 0.00 0.00 3.53
3602 4019 5.529581 ACAGTTTGGTTGGATGTTTTAGG 57.470 39.130 0.00 0.00 0.00 2.69
3603 4020 7.504924 TCTACAGTTTGGTTGGATGTTTTAG 57.495 36.000 0.00 0.00 0.00 1.85
3604 4021 7.040062 CCATCTACAGTTTGGTTGGATGTTTTA 60.040 37.037 0.00 0.00 32.73 1.52
3605 4022 6.239289 CCATCTACAGTTTGGTTGGATGTTTT 60.239 38.462 0.00 0.00 32.73 2.43
3606 4023 5.243730 CCATCTACAGTTTGGTTGGATGTTT 59.756 40.000 0.00 0.00 32.73 2.83
3607 4024 4.766891 CCATCTACAGTTTGGTTGGATGTT 59.233 41.667 0.00 0.00 32.73 2.71
3608 4025 4.042809 TCCATCTACAGTTTGGTTGGATGT 59.957 41.667 0.00 0.00 32.73 3.06
3609 4026 4.588899 TCCATCTACAGTTTGGTTGGATG 58.411 43.478 0.00 0.00 33.55 3.51
3610 4027 4.927267 TCCATCTACAGTTTGGTTGGAT 57.073 40.909 0.00 0.00 0.00 3.41
3611 4028 4.394729 GTTCCATCTACAGTTTGGTTGGA 58.605 43.478 0.00 0.00 0.00 3.53
3612 4029 3.506067 GGTTCCATCTACAGTTTGGTTGG 59.494 47.826 0.00 0.00 0.00 3.77
3613 4030 4.141287 TGGTTCCATCTACAGTTTGGTTG 58.859 43.478 0.00 0.00 0.00 3.77
3614 4031 4.447138 TGGTTCCATCTACAGTTTGGTT 57.553 40.909 0.00 0.00 0.00 3.67
3615 4032 4.567747 GGATGGTTCCATCTACAGTTTGGT 60.568 45.833 24.95 0.00 42.12 3.67
3616 4033 3.947834 GGATGGTTCCATCTACAGTTTGG 59.052 47.826 24.95 0.00 42.12 3.28
3617 4034 3.947834 GGGATGGTTCCATCTACAGTTTG 59.052 47.826 24.95 0.00 44.60 2.93
3618 4035 3.053619 GGGGATGGTTCCATCTACAGTTT 60.054 47.826 24.95 0.00 44.60 2.66
3619 4036 2.509964 GGGGATGGTTCCATCTACAGTT 59.490 50.000 24.95 0.00 44.60 3.16
3620 4037 2.127708 GGGGATGGTTCCATCTACAGT 58.872 52.381 24.95 0.00 44.60 3.55
3621 4038 2.412591 AGGGGATGGTTCCATCTACAG 58.587 52.381 24.95 0.00 44.60 2.74
3622 4039 2.509548 CAAGGGGATGGTTCCATCTACA 59.490 50.000 24.95 0.00 44.60 2.74
3623 4040 2.777692 TCAAGGGGATGGTTCCATCTAC 59.222 50.000 24.95 19.08 44.60 2.59
3624 4041 3.144068 TCAAGGGGATGGTTCCATCTA 57.856 47.619 24.95 7.31 44.60 1.98
3625 4042 1.985622 TCAAGGGGATGGTTCCATCT 58.014 50.000 24.95 8.54 44.60 2.90
3635 4052 4.468510 TGTAAAGACGTACATCAAGGGGAT 59.531 41.667 0.00 0.00 36.39 3.85
3636 4053 3.833650 TGTAAAGACGTACATCAAGGGGA 59.166 43.478 0.00 0.00 0.00 4.81
3637 4054 4.181578 CTGTAAAGACGTACATCAAGGGG 58.818 47.826 0.00 0.00 33.59 4.79
3638 4055 3.617263 GCTGTAAAGACGTACATCAAGGG 59.383 47.826 0.00 0.00 33.59 3.95
3639 4056 3.617263 GGCTGTAAAGACGTACATCAAGG 59.383 47.826 0.00 0.00 33.59 3.61
3640 4057 4.091509 GTGGCTGTAAAGACGTACATCAAG 59.908 45.833 0.00 0.00 33.59 3.02
3641 4058 3.991773 GTGGCTGTAAAGACGTACATCAA 59.008 43.478 0.00 0.00 33.59 2.57
3642 4059 3.581755 GTGGCTGTAAAGACGTACATCA 58.418 45.455 0.00 0.00 33.59 3.07
3643 4060 2.597305 CGTGGCTGTAAAGACGTACATC 59.403 50.000 0.00 0.00 33.59 3.06
3644 4061 2.229543 TCGTGGCTGTAAAGACGTACAT 59.770 45.455 0.00 0.00 33.59 2.29
3645 4062 1.608109 TCGTGGCTGTAAAGACGTACA 59.392 47.619 0.00 0.00 33.56 2.90
3646 4063 2.336554 TCGTGGCTGTAAAGACGTAC 57.663 50.000 0.00 0.00 33.56 3.67
3647 4064 2.476686 CGATCGTGGCTGTAAAGACGTA 60.477 50.000 7.03 0.00 33.56 3.57
3648 4065 1.731424 CGATCGTGGCTGTAAAGACGT 60.731 52.381 7.03 0.00 33.56 4.34
3649 4066 0.914551 CGATCGTGGCTGTAAAGACG 59.085 55.000 7.03 0.00 0.00 4.18
3650 4067 1.918609 GTCGATCGTGGCTGTAAAGAC 59.081 52.381 15.94 0.00 0.00 3.01
3651 4068 1.816835 AGTCGATCGTGGCTGTAAAGA 59.183 47.619 15.94 0.00 0.00 2.52
3652 4069 2.186076 GAGTCGATCGTGGCTGTAAAG 58.814 52.381 15.94 0.00 0.00 1.85
3653 4070 1.466866 CGAGTCGATCGTGGCTGTAAA 60.467 52.381 15.94 0.00 46.62 2.01
3654 4071 0.098200 CGAGTCGATCGTGGCTGTAA 59.902 55.000 15.94 0.00 46.62 2.41
3655 4072 1.719709 CGAGTCGATCGTGGCTGTA 59.280 57.895 15.94 0.00 46.62 2.74
3656 4073 2.485582 CGAGTCGATCGTGGCTGT 59.514 61.111 15.94 0.00 46.62 4.40
3664 4081 1.663074 GGAGGCATGCGAGTCGATC 60.663 63.158 18.61 0.00 0.00 3.69
3665 4082 1.680522 AAGGAGGCATGCGAGTCGAT 61.681 55.000 18.61 4.13 0.00 3.59
3666 4083 2.351244 AAGGAGGCATGCGAGTCGA 61.351 57.895 18.61 1.53 0.00 4.20
3667 4084 2.169789 CAAGGAGGCATGCGAGTCG 61.170 63.158 12.44 8.54 0.00 4.18
3668 4085 0.179062 ATCAAGGAGGCATGCGAGTC 60.179 55.000 12.44 8.16 0.00 3.36
3669 4086 1.123077 TATCAAGGAGGCATGCGAGT 58.877 50.000 12.44 0.00 0.00 4.18
3670 4087 2.469274 ATATCAAGGAGGCATGCGAG 57.531 50.000 12.44 0.00 0.00 5.03
3671 4088 3.865446 CATATATCAAGGAGGCATGCGA 58.135 45.455 12.44 2.01 0.00 5.10
3672 4089 2.353889 GCATATATCAAGGAGGCATGCG 59.646 50.000 12.44 0.00 0.00 4.73
3673 4090 2.686915 GGCATATATCAAGGAGGCATGC 59.313 50.000 9.90 9.90 37.23 4.06
3674 4091 4.197750 GAGGCATATATCAAGGAGGCATG 58.802 47.826 0.00 0.00 0.00 4.06
3675 4092 3.118482 CGAGGCATATATCAAGGAGGCAT 60.118 47.826 0.00 0.00 0.00 4.40
3676 4093 2.234661 CGAGGCATATATCAAGGAGGCA 59.765 50.000 0.00 0.00 0.00 4.75
3677 4094 2.234908 ACGAGGCATATATCAAGGAGGC 59.765 50.000 0.00 0.00 0.00 4.70
3678 4095 3.118956 GGACGAGGCATATATCAAGGAGG 60.119 52.174 0.00 0.00 0.00 4.30
3679 4096 3.511540 TGGACGAGGCATATATCAAGGAG 59.488 47.826 0.00 0.00 0.00 3.69
3680 4097 3.506398 TGGACGAGGCATATATCAAGGA 58.494 45.455 0.00 0.00 0.00 3.36
3681 4098 3.368843 CCTGGACGAGGCATATATCAAGG 60.369 52.174 0.00 0.00 34.01 3.61
3682 4099 3.368843 CCCTGGACGAGGCATATATCAAG 60.369 52.174 0.00 0.00 41.19 3.02
3683 4100 2.567169 CCCTGGACGAGGCATATATCAA 59.433 50.000 0.00 0.00 41.19 2.57
3684 4101 2.179427 CCCTGGACGAGGCATATATCA 58.821 52.381 0.00 0.00 41.19 2.15
3685 4102 1.482593 CCCCTGGACGAGGCATATATC 59.517 57.143 0.00 0.00 41.19 1.63
3686 4103 1.078823 TCCCCTGGACGAGGCATATAT 59.921 52.381 0.00 0.00 41.19 0.86
3687 4104 0.485543 TCCCCTGGACGAGGCATATA 59.514 55.000 0.00 0.00 41.19 0.86
3688 4105 0.833834 CTCCCCTGGACGAGGCATAT 60.834 60.000 0.00 0.00 41.19 1.78
3689 4106 1.457643 CTCCCCTGGACGAGGCATA 60.458 63.158 0.00 0.00 41.19 3.14
3690 4107 2.765807 CTCCCCTGGACGAGGCAT 60.766 66.667 0.00 0.00 41.19 4.40
3691 4108 3.539593 TTCTCCCCTGGACGAGGCA 62.540 63.158 9.89 0.00 41.19 4.75
3692 4109 2.683933 TTCTCCCCTGGACGAGGC 60.684 66.667 9.89 0.00 41.19 4.70
3693 4110 0.978146 ATGTTCTCCCCTGGACGAGG 60.978 60.000 9.89 0.00 42.38 4.63
3694 4111 0.905357 AATGTTCTCCCCTGGACGAG 59.095 55.000 0.00 0.00 0.00 4.18
3695 4112 1.278127 GAAATGTTCTCCCCTGGACGA 59.722 52.381 0.00 0.00 0.00 4.20
3696 4113 1.679032 GGAAATGTTCTCCCCTGGACG 60.679 57.143 0.00 0.00 0.00 4.79
3697 4114 1.636003 AGGAAATGTTCTCCCCTGGAC 59.364 52.381 0.00 0.00 32.95 4.02
3698 4115 2.059756 AGGAAATGTTCTCCCCTGGA 57.940 50.000 0.00 0.00 32.95 3.86
3699 4116 3.115390 TCTAGGAAATGTTCTCCCCTGG 58.885 50.000 0.00 0.00 32.95 4.45
3700 4117 6.694445 ATATCTAGGAAATGTTCTCCCCTG 57.306 41.667 0.00 0.00 32.95 4.45
3701 4118 7.404396 CCATATATCTAGGAAATGTTCTCCCCT 59.596 40.741 0.00 0.00 32.95 4.79
3702 4119 7.569240 CCATATATCTAGGAAATGTTCTCCCC 58.431 42.308 0.00 0.00 32.95 4.81
3703 4120 7.051000 GCCATATATCTAGGAAATGTTCTCCC 58.949 42.308 0.00 0.00 32.95 4.30
3704 4121 7.051000 GGCCATATATCTAGGAAATGTTCTCC 58.949 42.308 0.00 0.00 0.00 3.71
3705 4122 7.624549 TGGCCATATATCTAGGAAATGTTCTC 58.375 38.462 0.00 0.00 0.00 2.87
3706 4123 7.574021 TGGCCATATATCTAGGAAATGTTCT 57.426 36.000 0.00 0.00 0.00 3.01
3707 4124 9.553064 CTATGGCCATATATCTAGGAAATGTTC 57.447 37.037 25.62 0.00 0.00 3.18
3708 4125 7.995488 GCTATGGCCATATATCTAGGAAATGTT 59.005 37.037 25.62 0.00 0.00 2.71
3709 4126 7.127801 TGCTATGGCCATATATCTAGGAAATGT 59.872 37.037 25.62 0.00 37.74 2.71
3710 4127 7.443575 GTGCTATGGCCATATATCTAGGAAATG 59.556 40.741 25.62 10.26 37.74 2.32
3711 4128 7.420680 GGTGCTATGGCCATATATCTAGGAAAT 60.421 40.741 25.62 0.00 37.74 2.17
3712 4129 6.126768 GGTGCTATGGCCATATATCTAGGAAA 60.127 42.308 25.62 0.82 37.74 3.13
3713 4130 5.366768 GGTGCTATGGCCATATATCTAGGAA 59.633 44.000 25.62 4.17 37.74 3.36
3714 4131 4.901849 GGTGCTATGGCCATATATCTAGGA 59.098 45.833 25.62 13.25 37.74 2.94
3715 4132 4.262207 CGGTGCTATGGCCATATATCTAGG 60.262 50.000 25.62 13.07 37.74 3.02
3716 4133 4.584743 TCGGTGCTATGGCCATATATCTAG 59.415 45.833 25.62 15.63 37.74 2.43
3717 4134 4.341235 GTCGGTGCTATGGCCATATATCTA 59.659 45.833 25.62 8.04 37.74 1.98
3718 4135 3.133003 GTCGGTGCTATGGCCATATATCT 59.867 47.826 25.62 2.19 37.74 1.98
3719 4136 3.458189 GTCGGTGCTATGGCCATATATC 58.542 50.000 25.62 16.34 37.74 1.63
3720 4137 2.159099 CGTCGGTGCTATGGCCATATAT 60.159 50.000 25.62 3.48 37.74 0.86
3721 4138 1.203758 CGTCGGTGCTATGGCCATATA 59.796 52.381 25.62 14.91 37.74 0.86
3722 4139 0.037326 CGTCGGTGCTATGGCCATAT 60.037 55.000 25.62 4.77 37.74 1.78
3723 4140 1.110518 TCGTCGGTGCTATGGCCATA 61.111 55.000 24.02 24.02 37.74 2.74
3724 4141 1.758440 ATCGTCGGTGCTATGGCCAT 61.758 55.000 24.45 24.45 37.74 4.40
3725 4142 1.966901 AATCGTCGGTGCTATGGCCA 61.967 55.000 8.56 8.56 37.74 5.36
3726 4143 1.222115 GAATCGTCGGTGCTATGGCC 61.222 60.000 0.00 0.00 37.74 5.36
3727 4144 0.529773 TGAATCGTCGGTGCTATGGC 60.530 55.000 0.00 0.00 39.26 4.40
3728 4145 1.202417 AGTGAATCGTCGGTGCTATGG 60.202 52.381 0.00 0.00 0.00 2.74
3729 4146 2.209838 AGTGAATCGTCGGTGCTATG 57.790 50.000 0.00 0.00 0.00 2.23
3730 4147 2.961526 AAGTGAATCGTCGGTGCTAT 57.038 45.000 0.00 0.00 0.00 2.97
3731 4148 2.736144 AAAGTGAATCGTCGGTGCTA 57.264 45.000 0.00 0.00 0.00 3.49
3732 4149 1.878953 AAAAGTGAATCGTCGGTGCT 58.121 45.000 0.00 0.00 0.00 4.40
3733 4150 2.477375 TGTAAAAGTGAATCGTCGGTGC 59.523 45.455 0.00 0.00 0.00 5.01
3734 4151 3.739300 ACTGTAAAAGTGAATCGTCGGTG 59.261 43.478 0.00 0.00 37.88 4.94
3735 4152 3.986277 ACTGTAAAAGTGAATCGTCGGT 58.014 40.909 0.00 0.00 37.88 4.69
3746 4163 9.379791 GTGCCTTATATTAGACACTGTAAAAGT 57.620 33.333 1.45 0.00 40.93 2.66
3747 4164 9.601217 AGTGCCTTATATTAGACACTGTAAAAG 57.399 33.333 9.51 0.00 37.02 2.27
3748 4165 9.595823 GAGTGCCTTATATTAGACACTGTAAAA 57.404 33.333 14.31 0.00 38.42 1.52
3749 4166 8.755028 TGAGTGCCTTATATTAGACACTGTAAA 58.245 33.333 14.31 0.00 38.42 2.01
3750 4167 8.301252 TGAGTGCCTTATATTAGACACTGTAA 57.699 34.615 14.31 0.00 38.42 2.41
3751 4168 7.891498 TGAGTGCCTTATATTAGACACTGTA 57.109 36.000 14.31 2.47 38.42 2.74
3752 4169 6.791867 TGAGTGCCTTATATTAGACACTGT 57.208 37.500 14.31 0.00 38.42 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.