Multiple sequence alignment - TraesCS5A01G290500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G290500 chr5A 100.000 3367 0 0 1 3367 499171454 499168088 0.000000e+00 6218
1 TraesCS5A01G290500 chr5A 82.879 257 29 7 1281 1537 707718364 707718605 2.030000e-52 217
2 TraesCS5A01G290500 chr5A 82.197 264 31 9 1281 1544 439834426 439834179 2.630000e-51 213
3 TraesCS5A01G290500 chr2D 95.773 2910 100 11 476 3367 580783277 580786181 0.000000e+00 4671
4 TraesCS5A01G290500 chr2D 83.398 259 28 7 1281 1539 428579645 428579402 3.380000e-55 226
5 TraesCS5A01G290500 chr4A 95.673 2334 75 10 1057 3367 374405148 374407478 0.000000e+00 3727
6 TraesCS5A01G290500 chrUn 92.893 802 54 3 2470 3270 15414232 15413433 0.000000e+00 1162
7 TraesCS5A01G290500 chrUn 92.519 802 57 3 2470 3270 15749843 15750642 0.000000e+00 1146
8 TraesCS5A01G290500 chrUn 92.607 771 54 3 2470 3239 448849596 448850364 0.000000e+00 1105
9 TraesCS5A01G290500 chrUn 92.891 633 43 2 2470 3101 401659383 401660014 0.000000e+00 918
10 TraesCS5A01G290500 chrUn 91.856 528 41 2 2743 3270 428561217 428560692 0.000000e+00 736
11 TraesCS5A01G290500 chrUn 94.301 386 21 1 2470 2854 336472582 336472967 1.040000e-164 590
12 TraesCS5A01G290500 chrUn 94.301 386 21 1 2470 2854 336478781 336478396 1.040000e-164 590
13 TraesCS5A01G290500 chrUn 96.540 289 10 0 1 289 368859400 368859688 2.350000e-131 479
14 TraesCS5A01G290500 chrUn 96.540 289 10 0 1 289 374049505 374049217 2.350000e-131 479
15 TraesCS5A01G290500 chrUn 96.540 289 10 0 1 289 457068719 457069007 2.350000e-131 479
16 TraesCS5A01G290500 chrUn 82.490 257 29 9 1281 1537 372800650 372800890 9.470000e-51 211
17 TraesCS5A01G290500 chrUn 93.204 103 7 0 3265 3367 15570110 15570008 5.820000e-33 152
18 TraesCS5A01G290500 chrUn 93.204 103 7 0 3265 3367 15751060 15751162 5.820000e-33 152
19 TraesCS5A01G290500 chrUn 93.204 103 7 0 3265 3367 396011531 396011633 5.820000e-33 152
20 TraesCS5A01G290500 chrUn 93.204 103 7 0 3265 3367 428560270 428560168 5.820000e-33 152
21 TraesCS5A01G290500 chr2B 92.893 802 54 3 2470 3270 8403175 8402376 0.000000e+00 1162
22 TraesCS5A01G290500 chr6B 82.512 812 117 7 660 1470 614591210 614591997 0.000000e+00 689
23 TraesCS5A01G290500 chr6B 82.197 264 31 9 1281 1544 232748280 232748527 2.630000e-51 213
24 TraesCS5A01G290500 chr7D 86.688 631 57 12 2750 3367 212242890 212242274 0.000000e+00 675
25 TraesCS5A01G290500 chr7D 89.560 182 14 3 289 466 400227282 400227102 3.380000e-55 226
26 TraesCS5A01G290500 chr6D 96.886 289 9 0 1 289 300960225 300960513 5.050000e-133 484
27 TraesCS5A01G290500 chr6D 88.889 180 17 3 280 457 335792943 335792765 5.660000e-53 219
28 TraesCS5A01G290500 chr3D 96.886 289 9 0 1 289 552819708 552819996 5.050000e-133 484
29 TraesCS5A01G290500 chr3D 88.462 182 16 3 289 466 141478113 141478293 7.320000e-52 215
30 TraesCS5A01G290500 chr1D 96.886 289 9 0 1 289 344015125 344014837 5.050000e-133 484
31 TraesCS5A01G290500 chr1D 96.540 289 10 0 1 289 194285353 194285065 2.350000e-131 479
32 TraesCS5A01G290500 chr1D 96.540 289 10 0 1 289 231367332 231367620 2.350000e-131 479
33 TraesCS5A01G290500 chr1D 96.540 289 10 0 1 289 277701717 277702005 2.350000e-131 479
34 TraesCS5A01G290500 chr1D 92.466 146 11 0 286 431 300164451 300164596 3.400000e-50 209
35 TraesCS5A01G290500 chr1D 87.363 182 18 3 289 466 75874936 75875116 1.580000e-48 204
36 TraesCS5A01G290500 chr6A 93.333 150 10 0 289 438 497365306 497365157 4.370000e-54 222
37 TraesCS5A01G290500 chr6A 89.714 175 11 4 289 456 594613833 594613659 2.030000e-52 217
38 TraesCS5A01G290500 chr1A 91.358 162 12 2 282 442 505906352 505906192 1.570000e-53 220
39 TraesCS5A01G290500 chr7A 93.151 146 9 1 297 442 95921161 95921305 2.630000e-51 213
40 TraesCS5A01G290500 chr4B 82.197 264 31 9 1281 1544 1762563 1762810 2.630000e-51 213
41 TraesCS5A01G290500 chr3A 82.308 260 30 9 1281 1540 95547176 95546933 9.470000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G290500 chr5A 499168088 499171454 3366 True 6218 6218 100.0000 1 3367 1 chr5A.!!$R2 3366
1 TraesCS5A01G290500 chr2D 580783277 580786181 2904 False 4671 4671 95.7730 476 3367 1 chr2D.!!$F1 2891
2 TraesCS5A01G290500 chr4A 374405148 374407478 2330 False 3727 3727 95.6730 1057 3367 1 chr4A.!!$F1 2310
3 TraesCS5A01G290500 chrUn 15413433 15414232 799 True 1162 1162 92.8930 2470 3270 1 chrUn.!!$R1 800
4 TraesCS5A01G290500 chrUn 448849596 448850364 768 False 1105 1105 92.6070 2470 3239 1 chrUn.!!$F6 769
5 TraesCS5A01G290500 chrUn 401659383 401660014 631 False 918 918 92.8910 2470 3101 1 chrUn.!!$F5 631
6 TraesCS5A01G290500 chrUn 15749843 15751162 1319 False 649 1146 92.8615 2470 3367 2 chrUn.!!$F8 897
7 TraesCS5A01G290500 chrUn 428560168 428561217 1049 True 444 736 92.5300 2743 3367 2 chrUn.!!$R5 624
8 TraesCS5A01G290500 chr2B 8402376 8403175 799 True 1162 1162 92.8930 2470 3270 1 chr2B.!!$R1 800
9 TraesCS5A01G290500 chr6B 614591210 614591997 787 False 689 689 82.5120 660 1470 1 chr6B.!!$F2 810
10 TraesCS5A01G290500 chr7D 212242274 212242890 616 True 675 675 86.6880 2750 3367 1 chr7D.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.095245 GAACCATGTCGTGTGCATCG 59.905 55.0 7.73 7.73 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2375 1.135546 CGTGTCTCTCTGCATCGAAGT 60.136 52.381 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.623932 TCTACAAGTTCAGCTCCATTGT 57.376 40.909 7.89 7.89 37.77 2.71
22 23 4.973168 TCTACAAGTTCAGCTCCATTGTT 58.027 39.130 8.04 0.00 35.77 2.83
23 24 5.376625 TCTACAAGTTCAGCTCCATTGTTT 58.623 37.500 8.04 0.00 35.77 2.83
24 25 6.530120 TCTACAAGTTCAGCTCCATTGTTTA 58.470 36.000 8.04 0.00 35.77 2.01
25 26 6.995686 TCTACAAGTTCAGCTCCATTGTTTAA 59.004 34.615 8.04 0.00 35.77 1.52
26 27 6.463995 ACAAGTTCAGCTCCATTGTTTAAA 57.536 33.333 0.00 0.00 30.18 1.52
27 28 6.872920 ACAAGTTCAGCTCCATTGTTTAAAA 58.127 32.000 0.00 0.00 30.18 1.52
28 29 7.500141 ACAAGTTCAGCTCCATTGTTTAAAAT 58.500 30.769 0.00 0.00 30.18 1.82
29 30 8.637986 ACAAGTTCAGCTCCATTGTTTAAAATA 58.362 29.630 0.00 0.00 30.18 1.40
30 31 9.474920 CAAGTTCAGCTCCATTGTTTAAAATAA 57.525 29.630 0.00 0.00 0.00 1.40
31 32 9.476202 AAGTTCAGCTCCATTGTTTAAAATAAC 57.524 29.630 0.00 0.00 0.00 1.89
32 33 8.860088 AGTTCAGCTCCATTGTTTAAAATAACT 58.140 29.630 0.00 0.00 0.00 2.24
33 34 8.915654 GTTCAGCTCCATTGTTTAAAATAACTG 58.084 33.333 0.00 0.00 0.00 3.16
34 35 8.177119 TCAGCTCCATTGTTTAAAATAACTGT 57.823 30.769 0.00 0.00 0.00 3.55
35 36 8.296713 TCAGCTCCATTGTTTAAAATAACTGTC 58.703 33.333 0.00 0.00 0.00 3.51
36 37 8.081633 CAGCTCCATTGTTTAAAATAACTGTCA 58.918 33.333 0.00 0.00 0.00 3.58
37 38 8.806146 AGCTCCATTGTTTAAAATAACTGTCAT 58.194 29.630 0.00 0.00 0.00 3.06
38 39 8.863049 GCTCCATTGTTTAAAATAACTGTCATG 58.137 33.333 0.00 0.00 0.00 3.07
39 40 8.755696 TCCATTGTTTAAAATAACTGTCATGC 57.244 30.769 0.00 0.00 0.00 4.06
40 41 8.363390 TCCATTGTTTAAAATAACTGTCATGCA 58.637 29.630 0.00 0.00 0.00 3.96
41 42 9.153721 CCATTGTTTAAAATAACTGTCATGCAT 57.846 29.630 0.00 0.00 0.00 3.96
42 43 9.961266 CATTGTTTAAAATAACTGTCATGCATG 57.039 29.630 21.07 21.07 0.00 4.06
43 44 8.531622 TTGTTTAAAATAACTGTCATGCATGG 57.468 30.769 25.97 12.93 0.00 3.66
44 45 7.095910 TGTTTAAAATAACTGTCATGCATGGG 58.904 34.615 25.97 17.71 0.00 4.00
45 46 7.039434 TGTTTAAAATAACTGTCATGCATGGGA 60.039 33.333 25.97 12.03 0.00 4.37
46 47 5.999205 AAAATAACTGTCATGCATGGGAA 57.001 34.783 25.97 11.18 0.00 3.97
47 48 6.549433 AAAATAACTGTCATGCATGGGAAT 57.451 33.333 25.97 11.60 0.00 3.01
48 49 7.658525 AAAATAACTGTCATGCATGGGAATA 57.341 32.000 25.97 13.25 0.00 1.75
49 50 7.658525 AAATAACTGTCATGCATGGGAATAA 57.341 32.000 25.97 9.17 0.00 1.40
50 51 7.658525 AATAACTGTCATGCATGGGAATAAA 57.341 32.000 25.97 2.13 0.00 1.40
51 52 5.999205 AACTGTCATGCATGGGAATAAAA 57.001 34.783 25.97 1.33 0.00 1.52
52 53 5.329035 ACTGTCATGCATGGGAATAAAAC 57.671 39.130 25.97 14.35 0.00 2.43
53 54 4.771577 ACTGTCATGCATGGGAATAAAACA 59.228 37.500 25.97 17.87 0.00 2.83
54 55 5.422970 ACTGTCATGCATGGGAATAAAACAT 59.577 36.000 25.97 8.02 0.00 2.71
55 56 6.606796 ACTGTCATGCATGGGAATAAAACATA 59.393 34.615 25.97 0.00 0.00 2.29
56 57 7.041635 TGTCATGCATGGGAATAAAACATAG 57.958 36.000 25.97 0.00 0.00 2.23
57 58 6.606796 TGTCATGCATGGGAATAAAACATAGT 59.393 34.615 25.97 0.00 0.00 2.12
58 59 6.919662 GTCATGCATGGGAATAAAACATAGTG 59.080 38.462 25.97 0.00 0.00 2.74
59 60 6.832900 TCATGCATGGGAATAAAACATAGTGA 59.167 34.615 25.97 0.00 0.00 3.41
60 61 7.506599 TCATGCATGGGAATAAAACATAGTGAT 59.493 33.333 25.97 0.00 0.00 3.06
61 62 8.795513 CATGCATGGGAATAAAACATAGTGATA 58.204 33.333 19.40 0.00 0.00 2.15
62 63 8.938801 TGCATGGGAATAAAACATAGTGATAT 57.061 30.769 0.00 0.00 0.00 1.63
63 64 9.365906 TGCATGGGAATAAAACATAGTGATATT 57.634 29.630 0.00 0.00 0.00 1.28
76 77 9.712305 AACATAGTGATATTATGTAAGGAGTGC 57.288 33.333 0.11 0.00 40.01 4.40
77 78 8.870116 ACATAGTGATATTATGTAAGGAGTGCA 58.130 33.333 0.00 0.00 39.34 4.57
78 79 9.881649 CATAGTGATATTATGTAAGGAGTGCAT 57.118 33.333 0.00 0.00 36.42 3.96
79 80 9.881649 ATAGTGATATTATGTAAGGAGTGCATG 57.118 33.333 0.00 0.00 34.06 4.06
80 81 6.652481 AGTGATATTATGTAAGGAGTGCATGC 59.348 38.462 11.82 11.82 34.06 4.06
81 82 6.427853 GTGATATTATGTAAGGAGTGCATGCA 59.572 38.462 18.46 18.46 34.06 3.96
82 83 6.652062 TGATATTATGTAAGGAGTGCATGCAG 59.348 38.462 23.41 0.00 34.06 4.41
83 84 4.486125 TTATGTAAGGAGTGCATGCAGA 57.514 40.909 23.41 0.00 34.06 4.26
84 85 2.857186 TGTAAGGAGTGCATGCAGAA 57.143 45.000 23.41 0.00 0.00 3.02
85 86 3.138884 TGTAAGGAGTGCATGCAGAAA 57.861 42.857 23.41 0.00 0.00 2.52
86 87 3.689347 TGTAAGGAGTGCATGCAGAAAT 58.311 40.909 23.41 7.55 0.00 2.17
87 88 3.691118 TGTAAGGAGTGCATGCAGAAATC 59.309 43.478 23.41 16.14 0.00 2.17
88 89 1.376543 AGGAGTGCATGCAGAAATCG 58.623 50.000 23.41 0.00 0.00 3.34
89 90 1.089920 GGAGTGCATGCAGAAATCGT 58.910 50.000 23.41 0.00 0.00 3.73
90 91 1.202110 GGAGTGCATGCAGAAATCGTG 60.202 52.381 23.41 0.00 0.00 4.35
91 92 1.733912 GAGTGCATGCAGAAATCGTGA 59.266 47.619 23.41 0.00 0.00 4.35
92 93 1.736126 AGTGCATGCAGAAATCGTGAG 59.264 47.619 23.41 0.00 0.00 3.51
93 94 1.466167 GTGCATGCAGAAATCGTGAGT 59.534 47.619 23.41 0.00 0.00 3.41
94 95 1.465777 TGCATGCAGAAATCGTGAGTG 59.534 47.619 18.46 0.00 0.00 3.51
95 96 1.733912 GCATGCAGAAATCGTGAGTGA 59.266 47.619 14.21 0.00 0.00 3.41
96 97 2.353889 GCATGCAGAAATCGTGAGTGAT 59.646 45.455 14.21 0.00 0.00 3.06
97 98 3.787805 GCATGCAGAAATCGTGAGTGATG 60.788 47.826 14.21 0.00 0.00 3.07
98 99 2.349590 TGCAGAAATCGTGAGTGATGG 58.650 47.619 0.00 0.00 0.00 3.51
99 100 2.289631 TGCAGAAATCGTGAGTGATGGT 60.290 45.455 0.00 0.00 0.00 3.55
100 101 3.056179 TGCAGAAATCGTGAGTGATGGTA 60.056 43.478 0.00 0.00 0.00 3.25
101 102 3.553511 GCAGAAATCGTGAGTGATGGTAG 59.446 47.826 0.00 0.00 0.00 3.18
102 103 3.553511 CAGAAATCGTGAGTGATGGTAGC 59.446 47.826 0.00 0.00 0.00 3.58
103 104 3.195610 AGAAATCGTGAGTGATGGTAGCA 59.804 43.478 0.00 0.00 0.00 3.49
104 105 3.610040 AATCGTGAGTGATGGTAGCAA 57.390 42.857 0.00 0.00 0.00 3.91
105 106 2.363788 TCGTGAGTGATGGTAGCAAC 57.636 50.000 0.00 0.00 0.00 4.17
106 107 1.067142 TCGTGAGTGATGGTAGCAACC 60.067 52.381 0.00 0.00 46.98 3.77
107 108 1.066858 CGTGAGTGATGGTAGCAACCT 60.067 52.381 0.00 0.00 46.91 3.50
108 109 2.350522 GTGAGTGATGGTAGCAACCTG 58.649 52.381 0.00 0.00 46.91 4.00
109 110 1.977854 TGAGTGATGGTAGCAACCTGT 59.022 47.619 0.00 0.00 46.91 4.00
110 111 2.289631 TGAGTGATGGTAGCAACCTGTG 60.290 50.000 0.00 0.00 46.91 3.66
111 112 1.003580 AGTGATGGTAGCAACCTGTGG 59.996 52.381 0.00 0.00 46.91 4.17
112 113 1.003118 GTGATGGTAGCAACCTGTGGA 59.997 52.381 0.00 0.00 46.91 4.02
113 114 1.915489 TGATGGTAGCAACCTGTGGAT 59.085 47.619 0.00 0.00 46.91 3.41
114 115 3.111484 TGATGGTAGCAACCTGTGGATA 58.889 45.455 0.00 0.00 46.91 2.59
115 116 3.134623 TGATGGTAGCAACCTGTGGATAG 59.865 47.826 0.00 0.00 46.91 2.08
116 117 2.827755 TGGTAGCAACCTGTGGATAGA 58.172 47.619 0.00 0.00 46.91 1.98
117 118 2.500098 TGGTAGCAACCTGTGGATAGAC 59.500 50.000 0.00 0.00 46.91 2.59
118 119 2.158943 GGTAGCAACCTGTGGATAGACC 60.159 54.545 0.00 0.00 43.08 3.85
119 120 0.912486 AGCAACCTGTGGATAGACCC 59.088 55.000 0.00 0.00 38.00 4.46
120 121 0.618458 GCAACCTGTGGATAGACCCA 59.382 55.000 0.00 0.00 38.00 4.51
121 122 1.004277 GCAACCTGTGGATAGACCCAA 59.996 52.381 0.00 0.00 38.06 4.12
122 123 2.554344 GCAACCTGTGGATAGACCCAAA 60.554 50.000 0.00 0.00 38.06 3.28
123 124 3.761897 CAACCTGTGGATAGACCCAAAA 58.238 45.455 0.00 0.00 38.06 2.44
124 125 3.434940 ACCTGTGGATAGACCCAAAAC 57.565 47.619 0.00 0.00 38.06 2.43
125 126 2.041216 ACCTGTGGATAGACCCAAAACC 59.959 50.000 0.00 0.00 38.06 3.27
126 127 2.041081 CCTGTGGATAGACCCAAAACCA 59.959 50.000 0.00 0.00 38.06 3.67
127 128 3.499563 CCTGTGGATAGACCCAAAACCAA 60.500 47.826 0.00 0.00 38.06 3.67
128 129 4.344104 CTGTGGATAGACCCAAAACCAAT 58.656 43.478 0.00 0.00 38.06 3.16
129 130 5.505780 CTGTGGATAGACCCAAAACCAATA 58.494 41.667 0.00 0.00 38.06 1.90
130 131 5.893500 TGTGGATAGACCCAAAACCAATAA 58.106 37.500 0.00 0.00 38.06 1.40
131 132 6.498538 TGTGGATAGACCCAAAACCAATAAT 58.501 36.000 0.00 0.00 38.06 1.28
132 133 7.644062 TGTGGATAGACCCAAAACCAATAATA 58.356 34.615 0.00 0.00 38.06 0.98
133 134 7.777910 TGTGGATAGACCCAAAACCAATAATAG 59.222 37.037 0.00 0.00 38.06 1.73
134 135 6.775629 TGGATAGACCCAAAACCAATAATAGC 59.224 38.462 0.00 0.00 38.00 2.97
135 136 6.775629 GGATAGACCCAAAACCAATAATAGCA 59.224 38.462 0.00 0.00 0.00 3.49
136 137 7.040409 GGATAGACCCAAAACCAATAATAGCAG 60.040 40.741 0.00 0.00 0.00 4.24
137 138 4.956075 AGACCCAAAACCAATAATAGCAGG 59.044 41.667 0.00 0.00 0.00 4.85
138 139 3.450817 ACCCAAAACCAATAATAGCAGGC 59.549 43.478 0.00 0.00 0.00 4.85
139 140 3.450457 CCCAAAACCAATAATAGCAGGCA 59.550 43.478 0.00 0.00 0.00 4.75
140 141 4.441913 CCCAAAACCAATAATAGCAGGCAG 60.442 45.833 0.00 0.00 0.00 4.85
141 142 4.402155 CCAAAACCAATAATAGCAGGCAGA 59.598 41.667 0.00 0.00 0.00 4.26
142 143 5.069516 CCAAAACCAATAATAGCAGGCAGAT 59.930 40.000 0.00 0.00 0.00 2.90
143 144 6.265196 CCAAAACCAATAATAGCAGGCAGATA 59.735 38.462 0.00 0.00 0.00 1.98
144 145 7.201902 CCAAAACCAATAATAGCAGGCAGATAA 60.202 37.037 0.00 0.00 0.00 1.75
145 146 8.362639 CAAAACCAATAATAGCAGGCAGATAAT 58.637 33.333 0.00 0.00 0.00 1.28
146 147 7.458409 AACCAATAATAGCAGGCAGATAATG 57.542 36.000 0.00 0.00 0.00 1.90
147 148 5.948162 ACCAATAATAGCAGGCAGATAATGG 59.052 40.000 0.00 0.00 0.00 3.16
185 186 9.686683 AAATACAGATAATGGCTTCTTTACTGT 57.313 29.630 0.00 0.00 39.03 3.55
186 187 9.686683 AATACAGATAATGGCTTCTTTACTGTT 57.313 29.630 0.00 0.00 37.31 3.16
187 188 9.686683 ATACAGATAATGGCTTCTTTACTGTTT 57.313 29.630 0.00 0.00 37.31 2.83
188 189 7.820648 ACAGATAATGGCTTCTTTACTGTTTG 58.179 34.615 0.00 0.00 33.29 2.93
189 190 7.448469 ACAGATAATGGCTTCTTTACTGTTTGT 59.552 33.333 0.00 0.00 33.29 2.83
190 191 8.299570 CAGATAATGGCTTCTTTACTGTTTGTT 58.700 33.333 0.00 0.00 0.00 2.83
191 192 8.860088 AGATAATGGCTTCTTTACTGTTTGTTT 58.140 29.630 0.00 0.00 0.00 2.83
192 193 9.129209 GATAATGGCTTCTTTACTGTTTGTTTC 57.871 33.333 0.00 0.00 0.00 2.78
193 194 5.257082 TGGCTTCTTTACTGTTTGTTTCC 57.743 39.130 0.00 0.00 0.00 3.13
194 195 4.098807 TGGCTTCTTTACTGTTTGTTTCCC 59.901 41.667 0.00 0.00 0.00 3.97
195 196 4.098807 GGCTTCTTTACTGTTTGTTTCCCA 59.901 41.667 0.00 0.00 0.00 4.37
196 197 5.041287 GCTTCTTTACTGTTTGTTTCCCAC 58.959 41.667 0.00 0.00 0.00 4.61
197 198 5.585820 TTCTTTACTGTTTGTTTCCCACC 57.414 39.130 0.00 0.00 0.00 4.61
198 199 3.955551 TCTTTACTGTTTGTTTCCCACCC 59.044 43.478 0.00 0.00 0.00 4.61
199 200 3.383698 TTACTGTTTGTTTCCCACCCA 57.616 42.857 0.00 0.00 0.00 4.51
200 201 2.239681 ACTGTTTGTTTCCCACCCAA 57.760 45.000 0.00 0.00 0.00 4.12
201 202 1.828595 ACTGTTTGTTTCCCACCCAAC 59.171 47.619 0.00 0.00 0.00 3.77
202 203 1.827969 CTGTTTGTTTCCCACCCAACA 59.172 47.619 0.00 0.00 0.00 3.33
203 204 2.433970 CTGTTTGTTTCCCACCCAACAT 59.566 45.455 0.00 0.00 32.96 2.71
204 205 2.169352 TGTTTGTTTCCCACCCAACATG 59.831 45.455 0.00 0.00 32.96 3.21
205 206 2.432510 GTTTGTTTCCCACCCAACATGA 59.567 45.455 0.00 0.00 32.96 3.07
206 207 2.461300 TGTTTCCCACCCAACATGAA 57.539 45.000 0.00 0.00 0.00 2.57
207 208 2.752030 TGTTTCCCACCCAACATGAAA 58.248 42.857 0.00 0.00 0.00 2.69
208 209 2.432510 TGTTTCCCACCCAACATGAAAC 59.567 45.455 0.00 0.00 43.04 2.78
209 210 2.698274 GTTTCCCACCCAACATGAAACT 59.302 45.455 0.00 0.00 40.81 2.66
210 211 2.286365 TCCCACCCAACATGAAACTC 57.714 50.000 0.00 0.00 0.00 3.01
211 212 1.496857 TCCCACCCAACATGAAACTCA 59.503 47.619 0.00 0.00 0.00 3.41
212 213 2.109834 TCCCACCCAACATGAAACTCAT 59.890 45.455 0.00 0.00 37.65 2.90
213 214 3.332187 TCCCACCCAACATGAAACTCATA 59.668 43.478 0.00 0.00 34.28 2.15
214 215 3.696051 CCCACCCAACATGAAACTCATAG 59.304 47.826 0.00 0.00 34.28 2.23
215 216 4.335416 CCACCCAACATGAAACTCATAGT 58.665 43.478 0.00 0.00 34.28 2.12
216 217 5.496556 CCACCCAACATGAAACTCATAGTA 58.503 41.667 0.00 0.00 34.28 1.82
217 218 5.586243 CCACCCAACATGAAACTCATAGTAG 59.414 44.000 0.00 0.00 34.28 2.57
218 219 6.406370 CACCCAACATGAAACTCATAGTAGA 58.594 40.000 0.00 0.00 34.28 2.59
219 220 6.313905 CACCCAACATGAAACTCATAGTAGAC 59.686 42.308 0.00 0.00 34.28 2.59
220 221 6.013725 ACCCAACATGAAACTCATAGTAGACA 60.014 38.462 0.00 0.00 34.28 3.41
221 222 6.313905 CCCAACATGAAACTCATAGTAGACAC 59.686 42.308 0.00 0.00 34.28 3.67
222 223 6.313905 CCAACATGAAACTCATAGTAGACACC 59.686 42.308 0.00 0.00 34.28 4.16
223 224 5.651530 ACATGAAACTCATAGTAGACACCG 58.348 41.667 0.00 0.00 34.28 4.94
224 225 4.713824 TGAAACTCATAGTAGACACCGG 57.286 45.455 0.00 0.00 0.00 5.28
225 226 4.338012 TGAAACTCATAGTAGACACCGGA 58.662 43.478 9.46 0.00 0.00 5.14
226 227 4.398358 TGAAACTCATAGTAGACACCGGAG 59.602 45.833 9.46 1.26 0.00 4.63
227 228 3.928005 ACTCATAGTAGACACCGGAGA 57.072 47.619 9.46 0.00 0.00 3.71
228 229 4.440826 ACTCATAGTAGACACCGGAGAT 57.559 45.455 9.46 0.00 0.00 2.75
229 230 4.138290 ACTCATAGTAGACACCGGAGATG 58.862 47.826 9.46 0.00 0.00 2.90
230 231 4.141459 ACTCATAGTAGACACCGGAGATGA 60.141 45.833 9.46 3.33 0.00 2.92
231 232 4.788679 TCATAGTAGACACCGGAGATGAA 58.211 43.478 9.46 0.00 0.00 2.57
232 233 4.579340 TCATAGTAGACACCGGAGATGAAC 59.421 45.833 9.46 0.00 0.00 3.18
233 234 2.100989 AGTAGACACCGGAGATGAACC 58.899 52.381 9.46 0.00 0.00 3.62
242 243 3.833545 CGGAGATGAACCGGATAGTAG 57.166 52.381 9.46 0.00 45.65 2.57
243 244 3.409570 CGGAGATGAACCGGATAGTAGA 58.590 50.000 9.46 0.00 45.65 2.59
244 245 4.011023 CGGAGATGAACCGGATAGTAGAT 58.989 47.826 9.46 0.00 45.65 1.98
245 246 5.183969 CGGAGATGAACCGGATAGTAGATA 58.816 45.833 9.46 0.00 45.65 1.98
246 247 5.294799 CGGAGATGAACCGGATAGTAGATAG 59.705 48.000 9.46 0.00 45.65 2.08
247 248 6.416415 GGAGATGAACCGGATAGTAGATAGA 58.584 44.000 9.46 0.00 0.00 1.98
248 249 7.057894 GGAGATGAACCGGATAGTAGATAGAT 58.942 42.308 9.46 0.00 0.00 1.98
249 250 8.212312 GGAGATGAACCGGATAGTAGATAGATA 58.788 40.741 9.46 0.00 0.00 1.98
250 251 8.967664 AGATGAACCGGATAGTAGATAGATAC 57.032 38.462 9.46 0.00 0.00 2.24
251 252 8.774183 AGATGAACCGGATAGTAGATAGATACT 58.226 37.037 9.46 0.00 39.35 2.12
263 264 8.385898 AGTAGATAGATACTATTGATAGCGGC 57.614 38.462 0.00 0.00 34.21 6.53
264 265 6.307031 AGATAGATACTATTGATAGCGGCG 57.693 41.667 0.51 0.51 33.68 6.46
265 266 3.152261 AGATACTATTGATAGCGGCGC 57.848 47.619 26.86 26.86 33.68 6.53
266 267 2.159226 AGATACTATTGATAGCGGCGCC 60.159 50.000 30.40 19.07 33.68 6.53
267 268 0.109458 TACTATTGATAGCGGCGCCG 60.109 55.000 43.13 43.13 43.09 6.46
277 278 2.431942 CGGCGCCGATATGTACCC 60.432 66.667 44.86 1.62 42.83 3.69
278 279 2.047560 GGCGCCGATATGTACCCC 60.048 66.667 12.58 0.00 0.00 4.95
279 280 2.738480 GCGCCGATATGTACCCCA 59.262 61.111 0.00 0.00 0.00 4.96
280 281 1.666872 GCGCCGATATGTACCCCAC 60.667 63.158 0.00 0.00 0.00 4.61
281 282 1.743391 CGCCGATATGTACCCCACA 59.257 57.895 0.00 0.00 42.69 4.17
282 283 0.105224 CGCCGATATGTACCCCACAA 59.895 55.000 0.00 0.00 41.55 3.33
283 284 1.589803 GCCGATATGTACCCCACAAC 58.410 55.000 0.00 0.00 41.55 3.32
284 285 1.812708 GCCGATATGTACCCCACAACC 60.813 57.143 0.00 0.00 41.55 3.77
285 286 1.487142 CCGATATGTACCCCACAACCA 59.513 52.381 0.00 0.00 41.55 3.67
286 287 2.105821 CCGATATGTACCCCACAACCAT 59.894 50.000 0.00 0.00 41.55 3.55
287 288 3.434453 CCGATATGTACCCCACAACCATT 60.434 47.826 0.00 0.00 41.55 3.16
288 289 4.204012 CGATATGTACCCCACAACCATTT 58.796 43.478 0.00 0.00 41.55 2.32
289 290 4.274950 CGATATGTACCCCACAACCATTTC 59.725 45.833 0.00 0.00 41.55 2.17
290 291 3.825908 ATGTACCCCACAACCATTTCT 57.174 42.857 0.00 0.00 41.55 2.52
291 292 4.938575 ATGTACCCCACAACCATTTCTA 57.061 40.909 0.00 0.00 41.55 2.10
292 293 4.938575 TGTACCCCACAACCATTTCTAT 57.061 40.909 0.00 0.00 32.95 1.98
293 294 4.850680 TGTACCCCACAACCATTTCTATC 58.149 43.478 0.00 0.00 32.95 2.08
294 295 3.382083 ACCCCACAACCATTTCTATCC 57.618 47.619 0.00 0.00 0.00 2.59
295 296 2.024369 ACCCCACAACCATTTCTATCCC 60.024 50.000 0.00 0.00 0.00 3.85
296 297 2.244769 CCCCACAACCATTTCTATCCCT 59.755 50.000 0.00 0.00 0.00 4.20
297 298 3.461831 CCCCACAACCATTTCTATCCCTA 59.538 47.826 0.00 0.00 0.00 3.53
298 299 4.079443 CCCCACAACCATTTCTATCCCTAA 60.079 45.833 0.00 0.00 0.00 2.69
299 300 5.400189 CCCCACAACCATTTCTATCCCTAAT 60.400 44.000 0.00 0.00 0.00 1.73
300 301 6.183361 CCCCACAACCATTTCTATCCCTAATA 60.183 42.308 0.00 0.00 0.00 0.98
301 302 7.294584 CCCACAACCATTTCTATCCCTAATAA 58.705 38.462 0.00 0.00 0.00 1.40
302 303 7.950124 CCCACAACCATTTCTATCCCTAATAAT 59.050 37.037 0.00 0.00 0.00 1.28
311 312 8.842358 TTTCTATCCCTAATAATAAAGCACGG 57.158 34.615 0.00 0.00 0.00 4.94
312 313 7.786046 TCTATCCCTAATAATAAAGCACGGA 57.214 36.000 0.00 0.00 0.00 4.69
313 314 7.609056 TCTATCCCTAATAATAAAGCACGGAC 58.391 38.462 0.00 0.00 0.00 4.79
314 315 5.881923 TCCCTAATAATAAAGCACGGACT 57.118 39.130 0.00 0.00 0.00 3.85
315 316 5.607477 TCCCTAATAATAAAGCACGGACTG 58.393 41.667 0.00 0.00 0.00 3.51
316 317 5.364446 TCCCTAATAATAAAGCACGGACTGA 59.636 40.000 0.00 0.00 0.00 3.41
317 318 5.465724 CCCTAATAATAAAGCACGGACTGAC 59.534 44.000 0.00 0.00 0.00 3.51
318 319 6.281405 CCTAATAATAAAGCACGGACTGACT 58.719 40.000 0.00 0.00 0.00 3.41
319 320 6.421202 CCTAATAATAAAGCACGGACTGACTC 59.579 42.308 0.00 0.00 0.00 3.36
320 321 2.674796 ATAAAGCACGGACTGACTCC 57.325 50.000 0.00 0.00 35.33 3.85
327 328 3.468063 GGACTGACTCCGTGGGTT 58.532 61.111 0.00 0.00 0.00 4.11
328 329 1.292541 GGACTGACTCCGTGGGTTC 59.707 63.158 0.00 0.00 0.00 3.62
329 330 1.469335 GGACTGACTCCGTGGGTTCA 61.469 60.000 0.00 0.00 0.00 3.18
330 331 0.319641 GACTGACTCCGTGGGTTCAC 60.320 60.000 0.00 0.00 40.36 3.18
331 332 1.004918 CTGACTCCGTGGGTTCACC 60.005 63.158 0.00 0.00 40.65 4.02
332 333 2.048503 GACTCCGTGGGTTCACCG 60.049 66.667 0.00 0.00 44.64 4.94
333 334 2.841044 ACTCCGTGGGTTCACCGT 60.841 61.111 0.00 0.00 44.64 4.83
334 335 2.048503 CTCCGTGGGTTCACCGTC 60.049 66.667 0.00 0.00 44.64 4.79
335 336 2.838693 TCCGTGGGTTCACCGTCA 60.839 61.111 0.00 0.00 44.64 4.35
336 337 2.663852 CCGTGGGTTCACCGTCAC 60.664 66.667 0.00 0.00 44.64 3.67
337 338 2.107343 CGTGGGTTCACCGTCACA 59.893 61.111 6.29 0.00 44.64 3.58
338 339 1.521906 CGTGGGTTCACCGTCACAA 60.522 57.895 6.29 0.00 44.64 3.33
339 340 0.882927 CGTGGGTTCACCGTCACAAT 60.883 55.000 6.29 0.00 44.64 2.71
340 341 1.605968 CGTGGGTTCACCGTCACAATA 60.606 52.381 6.29 0.00 44.64 1.90
341 342 1.802365 GTGGGTTCACCGTCACAATAC 59.198 52.381 1.63 0.00 44.64 1.89
342 343 1.073177 GGGTTCACCGTCACAATACG 58.927 55.000 0.00 0.00 42.49 3.06
343 344 0.441145 GGTTCACCGTCACAATACGC 59.559 55.000 0.00 0.00 41.51 4.42
344 345 1.425412 GTTCACCGTCACAATACGCT 58.575 50.000 0.00 0.00 41.51 5.07
345 346 1.796459 GTTCACCGTCACAATACGCTT 59.204 47.619 0.00 0.00 41.51 4.68
346 347 2.157834 TCACCGTCACAATACGCTTT 57.842 45.000 0.00 0.00 41.51 3.51
347 348 2.063266 TCACCGTCACAATACGCTTTC 58.937 47.619 0.00 0.00 41.51 2.62
348 349 2.066262 CACCGTCACAATACGCTTTCT 58.934 47.619 0.00 0.00 41.51 2.52
349 350 2.478894 CACCGTCACAATACGCTTTCTT 59.521 45.455 0.00 0.00 41.51 2.52
350 351 3.059188 CACCGTCACAATACGCTTTCTTT 60.059 43.478 0.00 0.00 41.51 2.52
351 352 3.185797 ACCGTCACAATACGCTTTCTTTC 59.814 43.478 0.00 0.00 41.51 2.62
352 353 3.432252 CCGTCACAATACGCTTTCTTTCT 59.568 43.478 0.00 0.00 41.51 2.52
353 354 4.386230 CGTCACAATACGCTTTCTTTCTG 58.614 43.478 0.00 0.00 35.87 3.02
354 355 4.084537 CGTCACAATACGCTTTCTTTCTGT 60.085 41.667 0.00 0.00 35.87 3.41
355 356 5.118050 CGTCACAATACGCTTTCTTTCTGTA 59.882 40.000 0.00 0.00 35.87 2.74
356 357 6.346279 CGTCACAATACGCTTTCTTTCTGTAA 60.346 38.462 0.00 0.00 35.87 2.41
357 358 7.349711 GTCACAATACGCTTTCTTTCTGTAAA 58.650 34.615 0.00 0.00 0.00 2.01
358 359 8.015658 GTCACAATACGCTTTCTTTCTGTAAAT 58.984 33.333 0.00 0.00 0.00 1.40
359 360 8.564574 TCACAATACGCTTTCTTTCTGTAAATT 58.435 29.630 0.00 0.00 0.00 1.82
360 361 9.180678 CACAATACGCTTTCTTTCTGTAAATTT 57.819 29.630 0.00 0.00 0.00 1.82
363 364 9.537848 AATACGCTTTCTTTCTGTAAATTTACG 57.462 29.630 20.51 15.63 36.45 3.18
364 365 5.849604 ACGCTTTCTTTCTGTAAATTTACGC 59.150 36.000 20.51 13.87 36.45 4.42
365 366 6.077838 CGCTTTCTTTCTGTAAATTTACGCT 58.922 36.000 20.51 0.00 36.45 5.07
366 367 6.577427 CGCTTTCTTTCTGTAAATTTACGCTT 59.423 34.615 20.51 0.00 36.45 4.68
367 368 7.201157 CGCTTTCTTTCTGTAAATTTACGCTTC 60.201 37.037 20.51 0.55 36.45 3.86
368 369 7.803659 GCTTTCTTTCTGTAAATTTACGCTTCT 59.196 33.333 20.51 0.00 36.45 2.85
371 372 9.485206 TTCTTTCTGTAAATTTACGCTTCTAGT 57.515 29.630 20.51 0.00 36.45 2.57
372 373 9.485206 TCTTTCTGTAAATTTACGCTTCTAGTT 57.515 29.630 20.51 0.00 36.45 2.24
374 375 9.872757 TTTCTGTAAATTTACGCTTCTAGTTTG 57.127 29.630 20.51 2.90 36.45 2.93
375 376 8.821147 TCTGTAAATTTACGCTTCTAGTTTGA 57.179 30.769 20.51 1.04 36.45 2.69
376 377 9.263538 TCTGTAAATTTACGCTTCTAGTTTGAA 57.736 29.630 20.51 0.66 36.45 2.69
395 396 9.485591 AGTTTGAATTTAAAACATATACGCGAG 57.514 29.630 15.93 0.00 39.49 5.03
396 397 8.730427 GTTTGAATTTAAAACATATACGCGAGG 58.270 33.333 15.93 0.00 37.45 4.63
397 398 7.542534 TGAATTTAAAACATATACGCGAGGT 57.457 32.000 15.93 0.00 0.00 3.85
398 399 7.403421 TGAATTTAAAACATATACGCGAGGTG 58.597 34.615 15.93 8.59 0.00 4.00
399 400 5.721876 TTTAAAACATATACGCGAGGTGG 57.278 39.130 15.93 1.08 0.00 4.61
400 401 2.973694 AAACATATACGCGAGGTGGT 57.026 45.000 15.93 1.04 0.00 4.16
401 402 4.389890 AAAACATATACGCGAGGTGGTA 57.610 40.909 15.93 0.00 0.00 3.25
402 403 3.360249 AACATATACGCGAGGTGGTAC 57.640 47.619 15.93 0.00 0.00 3.34
403 404 2.579873 ACATATACGCGAGGTGGTACT 58.420 47.619 15.93 0.00 0.00 2.73
404 405 3.743521 ACATATACGCGAGGTGGTACTA 58.256 45.455 15.93 0.00 0.00 1.82
405 406 4.136796 ACATATACGCGAGGTGGTACTAA 58.863 43.478 15.93 0.00 0.00 2.24
406 407 4.763793 ACATATACGCGAGGTGGTACTAAT 59.236 41.667 15.93 0.00 0.00 1.73
407 408 5.242393 ACATATACGCGAGGTGGTACTAATT 59.758 40.000 15.93 0.00 0.00 1.40
408 409 2.573941 ACGCGAGGTGGTACTAATTC 57.426 50.000 15.93 0.00 0.00 2.17
409 410 1.202222 ACGCGAGGTGGTACTAATTCG 60.202 52.381 15.93 8.63 0.00 3.34
410 411 1.849097 GCGAGGTGGTACTAATTCGG 58.151 55.000 13.09 0.01 0.00 4.30
411 412 1.537562 GCGAGGTGGTACTAATTCGGG 60.538 57.143 13.09 0.00 0.00 5.14
412 413 1.068127 CGAGGTGGTACTAATTCGGGG 59.932 57.143 5.93 0.00 0.00 5.73
413 414 2.391678 GAGGTGGTACTAATTCGGGGA 58.608 52.381 0.00 0.00 0.00 4.81
414 415 2.767960 GAGGTGGTACTAATTCGGGGAA 59.232 50.000 0.00 0.00 0.00 3.97
415 416 2.502947 AGGTGGTACTAATTCGGGGAAC 59.497 50.000 0.00 0.00 0.00 3.62
428 429 4.057224 GGAACCATGTCGTGTGCA 57.943 55.556 0.00 0.00 0.00 4.57
429 430 2.555123 GGAACCATGTCGTGTGCAT 58.445 52.632 0.00 0.00 0.00 3.96
430 431 0.447801 GGAACCATGTCGTGTGCATC 59.552 55.000 0.00 0.00 0.00 3.91
431 432 0.095245 GAACCATGTCGTGTGCATCG 59.905 55.000 7.73 7.73 0.00 3.84
432 433 0.320334 AACCATGTCGTGTGCATCGA 60.320 50.000 11.76 11.76 34.91 3.59
433 434 0.320334 ACCATGTCGTGTGCATCGAA 60.320 50.000 16.14 9.05 39.01 3.71
434 435 0.095245 CCATGTCGTGTGCATCGAAC 59.905 55.000 16.14 11.77 39.01 3.95
435 436 0.246873 CATGTCGTGTGCATCGAACG 60.247 55.000 16.14 11.82 39.01 3.95
436 437 0.388006 ATGTCGTGTGCATCGAACGA 60.388 50.000 16.14 13.66 43.50 3.85
437 438 0.388006 TGTCGTGTGCATCGAACGAT 60.388 50.000 16.14 3.80 46.74 3.73
438 439 0.294887 GTCGTGTGCATCGAACGATC 59.705 55.000 16.14 3.73 46.74 3.69
439 440 3.252893 GTCGTGTGCATCGAACGATCG 62.253 57.143 14.88 14.88 46.74 3.69
447 448 2.507102 CGAACGATCGCACCTGCT 60.507 61.111 16.60 0.00 42.96 4.24
448 449 2.508891 CGAACGATCGCACCTGCTC 61.509 63.158 16.60 0.00 42.96 4.26
449 450 2.125512 AACGATCGCACCTGCTCC 60.126 61.111 16.60 0.00 39.32 4.70
450 451 3.665675 AACGATCGCACCTGCTCCC 62.666 63.158 16.60 0.00 39.32 4.30
451 452 3.842923 CGATCGCACCTGCTCCCT 61.843 66.667 0.26 0.00 39.32 4.20
452 453 2.586792 GATCGCACCTGCTCCCTT 59.413 61.111 0.00 0.00 39.32 3.95
453 454 1.522580 GATCGCACCTGCTCCCTTC 60.523 63.158 0.00 0.00 39.32 3.46
454 455 2.932130 GATCGCACCTGCTCCCTTCC 62.932 65.000 0.00 0.00 39.32 3.46
455 456 4.785453 CGCACCTGCTCCCTTCCC 62.785 72.222 0.00 0.00 39.32 3.97
456 457 4.432741 GCACCTGCTCCCTTCCCC 62.433 72.222 0.00 0.00 38.21 4.81
457 458 2.935481 CACCTGCTCCCTTCCCCA 60.935 66.667 0.00 0.00 0.00 4.96
458 459 2.612115 ACCTGCTCCCTTCCCCAG 60.612 66.667 0.00 0.00 0.00 4.45
459 460 2.285668 CCTGCTCCCTTCCCCAGA 60.286 66.667 0.00 0.00 0.00 3.86
460 461 2.674220 CCTGCTCCCTTCCCCAGAC 61.674 68.421 0.00 0.00 0.00 3.51
461 462 1.614824 CTGCTCCCTTCCCCAGACT 60.615 63.158 0.00 0.00 0.00 3.24
462 463 1.613630 TGCTCCCTTCCCCAGACTC 60.614 63.158 0.00 0.00 0.00 3.36
463 464 2.371259 GCTCCCTTCCCCAGACTCC 61.371 68.421 0.00 0.00 0.00 3.85
464 465 1.690985 CTCCCTTCCCCAGACTCCC 60.691 68.421 0.00 0.00 0.00 4.30
465 466 2.184631 TCCCTTCCCCAGACTCCCT 61.185 63.158 0.00 0.00 0.00 4.20
466 467 0.858598 TCCCTTCCCCAGACTCCCTA 60.859 60.000 0.00 0.00 0.00 3.53
467 468 0.269173 CCCTTCCCCAGACTCCCTAT 59.731 60.000 0.00 0.00 0.00 2.57
468 469 1.508185 CCCTTCCCCAGACTCCCTATA 59.492 57.143 0.00 0.00 0.00 1.31
469 470 2.114506 CCCTTCCCCAGACTCCCTATAT 59.885 54.545 0.00 0.00 0.00 0.86
470 471 3.340049 CCCTTCCCCAGACTCCCTATATA 59.660 52.174 0.00 0.00 0.00 0.86
471 472 4.015163 CCCTTCCCCAGACTCCCTATATAT 60.015 50.000 0.00 0.00 0.00 0.86
472 473 5.198013 CCCTTCCCCAGACTCCCTATATATA 59.802 48.000 0.00 0.00 0.00 0.86
473 474 6.125441 CCCTTCCCCAGACTCCCTATATATAT 60.125 46.154 0.00 0.00 0.00 0.86
474 475 7.076436 CCCTTCCCCAGACTCCCTATATATATA 59.924 44.444 2.49 2.49 0.00 0.86
541 542 1.737363 GCCTTTGTCTCGAGCGAATCT 60.737 52.381 7.81 0.00 0.00 2.40
545 546 1.139734 GTCTCGAGCGAATCTGCCA 59.860 57.895 7.81 0.00 34.65 4.92
624 625 3.936203 CGCCCCCGCTATAGCCAA 61.936 66.667 19.00 0.00 37.91 4.52
629 630 1.300697 CCCGCTATAGCCAACCGTC 60.301 63.158 19.00 0.00 37.91 4.79
668 669 1.834996 GCTGCAGATCCATCCTCCA 59.165 57.895 20.43 0.00 0.00 3.86
675 676 1.227812 AGATCCATCCTCCAATCCCCT 59.772 52.381 0.00 0.00 0.00 4.79
682 683 0.835941 CCTCCAATCCCCTGTCTCTG 59.164 60.000 0.00 0.00 0.00 3.35
694 695 1.309688 GTCTCTGGCTCCCTCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
722 723 3.054287 ACATCTCTCTCACGAACTAGGGA 60.054 47.826 0.00 0.00 0.00 4.20
749 750 1.339631 CCGCCACTATTTTCCTGGTCA 60.340 52.381 0.00 0.00 0.00 4.02
834 836 2.944668 AACCCTACCGCCCTCTCCT 61.945 63.158 0.00 0.00 0.00 3.69
849 851 2.977578 TCCTGTGGGAGCTCTACAC 58.022 57.895 25.29 25.29 36.57 2.90
853 855 0.324368 TGTGGGAGCTCTACACCGAT 60.324 55.000 27.38 0.00 34.33 4.18
985 987 2.505982 CGTGATCCGGGGCTTCAT 59.494 61.111 0.00 0.00 0.00 2.57
1039 1041 2.564721 GCCGGCTGCTTCACCTTTT 61.565 57.895 22.15 0.00 36.87 2.27
1041 1043 0.890996 CCGGCTGCTTCACCTTTTCT 60.891 55.000 0.00 0.00 0.00 2.52
1163 1165 4.586001 AGAAAAAGAGAATCAGCAAGGCAA 59.414 37.500 0.00 0.00 37.82 4.52
1192 1194 4.736126 TTGATCTCAAGGCACGATTCTA 57.264 40.909 0.00 0.00 0.00 2.10
1224 1226 1.167851 GCTGCTGACAAAGGCACATA 58.832 50.000 0.00 0.00 34.57 2.29
1389 1391 3.005554 AGTGATGCAGGTTCAGATTTCG 58.994 45.455 0.00 0.00 0.00 3.46
1453 1455 5.929415 TGTCTTTCAGATTACGCACATGTAA 59.071 36.000 0.00 0.00 38.58 2.41
1456 1458 8.600625 GTCTTTCAGATTACGCACATGTAATTA 58.399 33.333 0.00 0.00 43.28 1.40
1484 1486 6.871492 TGTCATATACTGTCGAAACATTGTGT 59.129 34.615 0.00 0.00 34.13 3.72
1485 1487 8.030106 TGTCATATACTGTCGAAACATTGTGTA 58.970 33.333 0.00 0.00 34.13 2.90
1676 1678 9.499479 CATTCTATTTCAGATATAAGGTGCTGT 57.501 33.333 0.00 0.00 31.77 4.40
1716 1718 7.662897 ACGCATAATTCTTTAAAGGGAAAACA 58.337 30.769 15.13 0.00 0.00 2.83
1730 1732 8.934023 AAAGGGAAAACACACTAGATAAATGA 57.066 30.769 0.00 0.00 0.00 2.57
1739 1743 8.128322 ACACACTAGATAAATGAGAGACAGTT 57.872 34.615 0.00 0.00 40.02 3.16
2063 2067 6.968263 TGTTCAGTTGGGATCAATTTTGTA 57.032 33.333 0.00 0.00 35.10 2.41
2103 2107 0.400594 GACCAACCCTGCTACAACCT 59.599 55.000 0.00 0.00 0.00 3.50
2145 2149 1.488393 TGTCAGGAACCACACACATCA 59.512 47.619 0.00 0.00 0.00 3.07
2389 2393 1.889170 ACACTTCGATGCAGAGAGACA 59.111 47.619 0.00 0.00 0.00 3.41
2409 2413 2.231478 CACGAACTCTCCTCTTAGCCAA 59.769 50.000 0.00 0.00 0.00 4.52
2430 2434 4.078639 AGACATGAAGTAAGCCATAGCC 57.921 45.455 0.00 0.00 41.25 3.93
2432 2436 4.103785 AGACATGAAGTAAGCCATAGCCAT 59.896 41.667 0.00 0.00 41.25 4.40
2438 2442 5.130311 TGAAGTAAGCCATAGCCATAGAACA 59.870 40.000 0.00 0.00 41.25 3.18
2444 2448 3.884895 CCATAGCCATAGAACACCAACA 58.115 45.455 0.00 0.00 0.00 3.33
2446 2450 2.949177 AGCCATAGAACACCAACACA 57.051 45.000 0.00 0.00 0.00 3.72
2447 2451 3.439857 AGCCATAGAACACCAACACAT 57.560 42.857 0.00 0.00 0.00 3.21
2448 2452 3.084039 AGCCATAGAACACCAACACATG 58.916 45.455 0.00 0.00 0.00 3.21
2488 2508 0.694771 TTCCCTCATGCACTCAGCTT 59.305 50.000 0.00 0.00 45.94 3.74
2518 2542 3.610619 CTCACCATGCCGCCACTCA 62.611 63.158 0.00 0.00 0.00 3.41
2633 2660 9.474920 GAAAATTAGTTGTCAATTTCATCACCA 57.525 29.630 4.46 0.00 35.15 4.17
2695 2722 1.953686 GCTCAACCTACAACTTTGCCA 59.046 47.619 0.00 0.00 0.00 4.92
2703 2730 3.189287 CCTACAACTTTGCCATCACACTC 59.811 47.826 0.00 0.00 0.00 3.51
2723 2750 7.373441 CACACTCTCTTTTGTTTACGCTTAAAG 59.627 37.037 0.00 0.00 0.00 1.85
2791 2819 6.092122 TGCTTGGTTTGAAGATATACAGAACG 59.908 38.462 0.00 0.00 0.00 3.95
2925 2954 6.774656 CCATAGGAATAAATCAAGGAGCAACT 59.225 38.462 0.00 0.00 0.00 3.16
3008 3037 3.475566 TGTCCTCAAGTTCAAGTCTGG 57.524 47.619 0.00 0.00 0.00 3.86
3034 3063 9.929180 GTCTGTTTATATAGGCATGTGAGATTA 57.071 33.333 0.00 0.00 0.00 1.75
3051 3080 7.333174 TGTGAGATTACAGCGAATTTGTTCATA 59.667 33.333 0.00 0.00 0.00 2.15
3056 3085 4.072131 ACAGCGAATTTGTTCATACTGGT 58.928 39.130 0.00 0.00 0.00 4.00
3064 3093 8.717821 CGAATTTGTTCATACTGGTTCTTTCTA 58.282 33.333 0.00 0.00 0.00 2.10
3119 3151 3.819652 ATATGGGCGGCCAAGGCA 61.820 61.111 36.08 20.05 44.11 4.75
3152 3184 0.606401 GTTGCTGCTCTTGCTGGGTA 60.606 55.000 0.00 0.00 40.48 3.69
3234 3266 6.306199 CCACCTCCACAAATCAATGGATATA 58.694 40.000 0.00 0.00 44.06 0.86
3275 3734 5.689961 GTGCAACGTTATGTTTGATTCCTTT 59.310 36.000 0.00 0.00 39.29 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.623932 ACAATGGAGCTGAACTTGTAGA 57.376 40.909 0.00 0.00 0.00 2.59
1 2 5.695851 AAACAATGGAGCTGAACTTGTAG 57.304 39.130 0.00 0.00 30.33 2.74
2 3 7.575414 TTTAAACAATGGAGCTGAACTTGTA 57.425 32.000 0.00 0.00 30.33 2.41
3 4 6.463995 TTTAAACAATGGAGCTGAACTTGT 57.536 33.333 0.00 0.00 0.00 3.16
4 5 7.951530 ATTTTAAACAATGGAGCTGAACTTG 57.048 32.000 0.00 0.00 0.00 3.16
5 6 9.476202 GTTATTTTAAACAATGGAGCTGAACTT 57.524 29.630 0.00 0.00 0.00 2.66
6 7 8.860088 AGTTATTTTAAACAATGGAGCTGAACT 58.140 29.630 0.00 0.00 0.00 3.01
7 8 8.915654 CAGTTATTTTAAACAATGGAGCTGAAC 58.084 33.333 0.00 0.00 0.00 3.18
8 9 8.637986 ACAGTTATTTTAAACAATGGAGCTGAA 58.362 29.630 0.00 0.00 0.00 3.02
9 10 8.177119 ACAGTTATTTTAAACAATGGAGCTGA 57.823 30.769 0.00 0.00 0.00 4.26
10 11 8.081633 TGACAGTTATTTTAAACAATGGAGCTG 58.918 33.333 0.00 0.00 0.00 4.24
11 12 8.177119 TGACAGTTATTTTAAACAATGGAGCT 57.823 30.769 0.00 0.00 0.00 4.09
12 13 8.863049 CATGACAGTTATTTTAAACAATGGAGC 58.137 33.333 0.00 0.00 0.00 4.70
13 14 8.863049 GCATGACAGTTATTTTAAACAATGGAG 58.137 33.333 0.00 0.00 0.00 3.86
14 15 8.363390 TGCATGACAGTTATTTTAAACAATGGA 58.637 29.630 0.00 0.00 0.00 3.41
15 16 8.531622 TGCATGACAGTTATTTTAAACAATGG 57.468 30.769 0.00 0.00 0.00 3.16
16 17 9.961266 CATGCATGACAGTTATTTTAAACAATG 57.039 29.630 22.59 0.00 0.00 2.82
17 18 9.153721 CCATGCATGACAGTTATTTTAAACAAT 57.846 29.630 28.31 0.00 0.00 2.71
18 19 7.601886 CCCATGCATGACAGTTATTTTAAACAA 59.398 33.333 28.31 0.00 0.00 2.83
19 20 7.039434 TCCCATGCATGACAGTTATTTTAAACA 60.039 33.333 28.31 0.00 0.00 2.83
20 21 7.319646 TCCCATGCATGACAGTTATTTTAAAC 58.680 34.615 28.31 0.00 0.00 2.01
21 22 7.473735 TCCCATGCATGACAGTTATTTTAAA 57.526 32.000 28.31 0.00 0.00 1.52
22 23 7.473735 TTCCCATGCATGACAGTTATTTTAA 57.526 32.000 28.31 2.45 0.00 1.52
23 24 7.658525 ATTCCCATGCATGACAGTTATTTTA 57.341 32.000 28.31 0.00 0.00 1.52
24 25 5.999205 TTCCCATGCATGACAGTTATTTT 57.001 34.783 28.31 0.00 0.00 1.82
25 26 7.658525 TTATTCCCATGCATGACAGTTATTT 57.341 32.000 28.31 5.32 0.00 1.40
26 27 7.658525 TTTATTCCCATGCATGACAGTTATT 57.341 32.000 28.31 6.70 0.00 1.40
27 28 7.123997 TGTTTTATTCCCATGCATGACAGTTAT 59.876 33.333 28.31 13.39 0.00 1.89
28 29 6.435591 TGTTTTATTCCCATGCATGACAGTTA 59.564 34.615 28.31 9.77 0.00 2.24
29 30 5.245751 TGTTTTATTCCCATGCATGACAGTT 59.754 36.000 28.31 10.72 0.00 3.16
30 31 4.771577 TGTTTTATTCCCATGCATGACAGT 59.228 37.500 28.31 12.40 0.00 3.55
31 32 5.327616 TGTTTTATTCCCATGCATGACAG 57.672 39.130 28.31 15.57 0.00 3.51
32 33 5.936187 ATGTTTTATTCCCATGCATGACA 57.064 34.783 28.31 20.07 0.00 3.58
33 34 6.919662 CACTATGTTTTATTCCCATGCATGAC 59.080 38.462 28.31 15.15 0.00 3.06
34 35 6.832900 TCACTATGTTTTATTCCCATGCATGA 59.167 34.615 28.31 8.76 0.00 3.07
35 36 7.041635 TCACTATGTTTTATTCCCATGCATG 57.958 36.000 20.19 20.19 0.00 4.06
36 37 7.844493 ATCACTATGTTTTATTCCCATGCAT 57.156 32.000 0.00 0.00 0.00 3.96
37 38 8.938801 ATATCACTATGTTTTATTCCCATGCA 57.061 30.769 0.00 0.00 0.00 3.96
50 51 9.712305 GCACTCCTTACATAATATCACTATGTT 57.288 33.333 4.32 0.00 39.92 2.71
51 52 8.870116 TGCACTCCTTACATAATATCACTATGT 58.130 33.333 4.41 4.41 41.66 2.29
52 53 9.881649 ATGCACTCCTTACATAATATCACTATG 57.118 33.333 0.00 0.00 33.71 2.23
53 54 9.881649 CATGCACTCCTTACATAATATCACTAT 57.118 33.333 0.00 0.00 0.00 2.12
54 55 7.819415 GCATGCACTCCTTACATAATATCACTA 59.181 37.037 14.21 0.00 0.00 2.74
55 56 6.652481 GCATGCACTCCTTACATAATATCACT 59.348 38.462 14.21 0.00 0.00 3.41
56 57 6.427853 TGCATGCACTCCTTACATAATATCAC 59.572 38.462 18.46 0.00 0.00 3.06
57 58 6.532826 TGCATGCACTCCTTACATAATATCA 58.467 36.000 18.46 0.00 0.00 2.15
58 59 6.875726 TCTGCATGCACTCCTTACATAATATC 59.124 38.462 18.46 0.00 0.00 1.63
59 60 6.772605 TCTGCATGCACTCCTTACATAATAT 58.227 36.000 18.46 0.00 0.00 1.28
60 61 6.173427 TCTGCATGCACTCCTTACATAATA 57.827 37.500 18.46 0.00 0.00 0.98
61 62 5.039920 TCTGCATGCACTCCTTACATAAT 57.960 39.130 18.46 0.00 0.00 1.28
62 63 4.486125 TCTGCATGCACTCCTTACATAA 57.514 40.909 18.46 0.00 0.00 1.90
63 64 4.486125 TTCTGCATGCACTCCTTACATA 57.514 40.909 18.46 0.00 0.00 2.29
64 65 3.354948 TTCTGCATGCACTCCTTACAT 57.645 42.857 18.46 0.00 0.00 2.29
65 66 2.857186 TTCTGCATGCACTCCTTACA 57.143 45.000 18.46 0.00 0.00 2.41
66 67 3.242543 CGATTTCTGCATGCACTCCTTAC 60.243 47.826 18.46 4.54 0.00 2.34
67 68 2.938451 CGATTTCTGCATGCACTCCTTA 59.062 45.455 18.46 0.00 0.00 2.69
68 69 1.741706 CGATTTCTGCATGCACTCCTT 59.258 47.619 18.46 0.23 0.00 3.36
69 70 1.339438 ACGATTTCTGCATGCACTCCT 60.339 47.619 18.46 1.64 0.00 3.69
70 71 1.089920 ACGATTTCTGCATGCACTCC 58.910 50.000 18.46 3.61 0.00 3.85
71 72 1.733912 TCACGATTTCTGCATGCACTC 59.266 47.619 18.46 10.19 0.00 3.51
72 73 1.736126 CTCACGATTTCTGCATGCACT 59.264 47.619 18.46 1.23 0.00 4.40
73 74 1.466167 ACTCACGATTTCTGCATGCAC 59.534 47.619 18.46 5.65 0.00 4.57
74 75 1.465777 CACTCACGATTTCTGCATGCA 59.534 47.619 21.29 21.29 0.00 3.96
75 76 1.733912 TCACTCACGATTTCTGCATGC 59.266 47.619 11.82 11.82 0.00 4.06
76 77 3.242641 CCATCACTCACGATTTCTGCATG 60.243 47.826 0.00 0.00 0.00 4.06
77 78 2.941064 CCATCACTCACGATTTCTGCAT 59.059 45.455 0.00 0.00 0.00 3.96
78 79 2.289631 ACCATCACTCACGATTTCTGCA 60.290 45.455 0.00 0.00 0.00 4.41
79 80 2.350522 ACCATCACTCACGATTTCTGC 58.649 47.619 0.00 0.00 0.00 4.26
80 81 3.553511 GCTACCATCACTCACGATTTCTG 59.446 47.826 0.00 0.00 0.00 3.02
81 82 3.195610 TGCTACCATCACTCACGATTTCT 59.804 43.478 0.00 0.00 0.00 2.52
82 83 3.521560 TGCTACCATCACTCACGATTTC 58.478 45.455 0.00 0.00 0.00 2.17
83 84 3.610040 TGCTACCATCACTCACGATTT 57.390 42.857 0.00 0.00 0.00 2.17
84 85 3.262420 GTTGCTACCATCACTCACGATT 58.738 45.455 0.00 0.00 0.00 3.34
85 86 2.418746 GGTTGCTACCATCACTCACGAT 60.419 50.000 12.79 0.00 44.36 3.73
86 87 1.067142 GGTTGCTACCATCACTCACGA 60.067 52.381 12.79 0.00 44.36 4.35
87 88 1.359848 GGTTGCTACCATCACTCACG 58.640 55.000 12.79 0.00 44.36 4.35
94 95 7.703945 GGTCTATCCACAGGTTGCTACCATC 62.704 52.000 19.71 0.00 40.56 3.51
95 96 5.967806 GGTCTATCCACAGGTTGCTACCAT 61.968 50.000 19.71 6.25 40.56 3.55
96 97 4.700907 GGTCTATCCACAGGTTGCTACCA 61.701 52.174 19.71 0.00 40.56 3.25
97 98 2.158943 GGTCTATCCACAGGTTGCTACC 60.159 54.545 9.54 9.54 39.36 3.18
98 99 2.158943 GGGTCTATCCACAGGTTGCTAC 60.159 54.545 0.00 0.00 38.11 3.58
99 100 2.116238 GGGTCTATCCACAGGTTGCTA 58.884 52.381 0.00 0.00 38.11 3.49
100 101 0.912486 GGGTCTATCCACAGGTTGCT 59.088 55.000 0.00 0.00 38.11 3.91
101 102 0.618458 TGGGTCTATCCACAGGTTGC 59.382 55.000 0.00 0.00 38.11 4.17
102 103 3.433306 TTTGGGTCTATCCACAGGTTG 57.567 47.619 0.00 0.00 36.38 3.77
103 104 3.499745 GGTTTTGGGTCTATCCACAGGTT 60.500 47.826 0.00 0.00 36.38 3.50
104 105 2.041216 GGTTTTGGGTCTATCCACAGGT 59.959 50.000 0.00 0.00 36.38 4.00
105 106 2.041081 TGGTTTTGGGTCTATCCACAGG 59.959 50.000 0.00 0.00 36.38 4.00
106 107 3.433306 TGGTTTTGGGTCTATCCACAG 57.567 47.619 0.00 0.00 36.38 3.66
107 108 3.885976 TTGGTTTTGGGTCTATCCACA 57.114 42.857 0.00 0.00 36.38 4.17
108 109 7.255486 GCTATTATTGGTTTTGGGTCTATCCAC 60.255 40.741 0.00 0.00 36.38 4.02
109 110 6.775629 GCTATTATTGGTTTTGGGTCTATCCA 59.224 38.462 0.00 0.00 38.11 3.41
110 111 6.775629 TGCTATTATTGGTTTTGGGTCTATCC 59.224 38.462 0.00 0.00 0.00 2.59
111 112 7.040409 CCTGCTATTATTGGTTTTGGGTCTATC 60.040 40.741 0.00 0.00 0.00 2.08
112 113 6.777580 CCTGCTATTATTGGTTTTGGGTCTAT 59.222 38.462 0.00 0.00 0.00 1.98
113 114 6.126409 CCTGCTATTATTGGTTTTGGGTCTA 58.874 40.000 0.00 0.00 0.00 2.59
114 115 4.956075 CCTGCTATTATTGGTTTTGGGTCT 59.044 41.667 0.00 0.00 0.00 3.85
115 116 4.441495 GCCTGCTATTATTGGTTTTGGGTC 60.441 45.833 0.00 0.00 0.00 4.46
116 117 3.450817 GCCTGCTATTATTGGTTTTGGGT 59.549 43.478 0.00 0.00 0.00 4.51
117 118 3.450457 TGCCTGCTATTATTGGTTTTGGG 59.550 43.478 0.00 0.00 0.00 4.12
118 119 4.402155 TCTGCCTGCTATTATTGGTTTTGG 59.598 41.667 0.00 0.00 0.00 3.28
119 120 5.581126 TCTGCCTGCTATTATTGGTTTTG 57.419 39.130 0.00 0.00 0.00 2.44
120 121 7.896383 TTATCTGCCTGCTATTATTGGTTTT 57.104 32.000 0.00 0.00 0.00 2.43
121 122 7.039504 CCATTATCTGCCTGCTATTATTGGTTT 60.040 37.037 0.00 0.00 0.00 3.27
122 123 6.435277 CCATTATCTGCCTGCTATTATTGGTT 59.565 38.462 0.00 0.00 0.00 3.67
123 124 5.948162 CCATTATCTGCCTGCTATTATTGGT 59.052 40.000 0.00 0.00 0.00 3.67
124 125 5.163581 GCCATTATCTGCCTGCTATTATTGG 60.164 44.000 0.00 0.00 0.00 3.16
125 126 5.651139 AGCCATTATCTGCCTGCTATTATTG 59.349 40.000 0.00 0.00 0.00 1.90
126 127 5.824421 AGCCATTATCTGCCTGCTATTATT 58.176 37.500 0.00 0.00 0.00 1.40
127 128 5.447778 AGCCATTATCTGCCTGCTATTAT 57.552 39.130 0.00 0.00 0.00 1.28
128 129 4.916041 AGCCATTATCTGCCTGCTATTA 57.084 40.909 0.00 0.00 0.00 0.98
129 130 3.803186 AGCCATTATCTGCCTGCTATT 57.197 42.857 0.00 0.00 0.00 1.73
130 131 3.073503 TGAAGCCATTATCTGCCTGCTAT 59.926 43.478 0.00 0.00 0.00 2.97
131 132 2.439135 TGAAGCCATTATCTGCCTGCTA 59.561 45.455 0.00 0.00 0.00 3.49
132 133 1.213678 TGAAGCCATTATCTGCCTGCT 59.786 47.619 0.00 0.00 0.00 4.24
133 134 1.607628 CTGAAGCCATTATCTGCCTGC 59.392 52.381 0.00 0.00 0.00 4.85
134 135 2.928334 ACTGAAGCCATTATCTGCCTG 58.072 47.619 0.00 0.00 0.00 4.85
135 136 3.659183 AACTGAAGCCATTATCTGCCT 57.341 42.857 0.00 0.00 0.00 4.75
136 137 5.835113 TTTAACTGAAGCCATTATCTGCC 57.165 39.130 0.00 0.00 0.00 4.85
159 160 9.686683 ACAGTAAAGAAGCCATTATCTGTATTT 57.313 29.630 0.00 0.00 32.95 1.40
160 161 9.686683 AACAGTAAAGAAGCCATTATCTGTATT 57.313 29.630 0.00 0.00 34.06 1.89
161 162 9.686683 AAACAGTAAAGAAGCCATTATCTGTAT 57.313 29.630 0.00 0.00 34.06 2.29
162 163 8.946085 CAAACAGTAAAGAAGCCATTATCTGTA 58.054 33.333 0.00 0.00 34.06 2.74
163 164 7.448469 ACAAACAGTAAAGAAGCCATTATCTGT 59.552 33.333 0.00 0.00 35.58 3.41
164 165 7.820648 ACAAACAGTAAAGAAGCCATTATCTG 58.179 34.615 0.00 0.00 0.00 2.90
165 166 8.409358 AACAAACAGTAAAGAAGCCATTATCT 57.591 30.769 0.00 0.00 0.00 1.98
166 167 9.129209 GAAACAAACAGTAAAGAAGCCATTATC 57.871 33.333 0.00 0.00 0.00 1.75
167 168 8.088365 GGAAACAAACAGTAAAGAAGCCATTAT 58.912 33.333 0.00 0.00 0.00 1.28
168 169 7.430441 GGAAACAAACAGTAAAGAAGCCATTA 58.570 34.615 0.00 0.00 0.00 1.90
169 170 6.280643 GGAAACAAACAGTAAAGAAGCCATT 58.719 36.000 0.00 0.00 0.00 3.16
170 171 5.221441 GGGAAACAAACAGTAAAGAAGCCAT 60.221 40.000 0.00 0.00 0.00 4.40
171 172 4.098807 GGGAAACAAACAGTAAAGAAGCCA 59.901 41.667 0.00 0.00 0.00 4.75
172 173 4.098807 TGGGAAACAAACAGTAAAGAAGCC 59.901 41.667 0.00 0.00 0.00 4.35
173 174 5.041287 GTGGGAAACAAACAGTAAAGAAGC 58.959 41.667 0.00 0.00 0.00 3.86
174 175 5.451381 GGGTGGGAAACAAACAGTAAAGAAG 60.451 44.000 0.00 0.00 0.00 2.85
175 176 4.403113 GGGTGGGAAACAAACAGTAAAGAA 59.597 41.667 0.00 0.00 0.00 2.52
176 177 3.955551 GGGTGGGAAACAAACAGTAAAGA 59.044 43.478 0.00 0.00 0.00 2.52
177 178 3.702045 TGGGTGGGAAACAAACAGTAAAG 59.298 43.478 0.00 0.00 0.00 1.85
178 179 3.709587 TGGGTGGGAAACAAACAGTAAA 58.290 40.909 0.00 0.00 0.00 2.01
179 180 3.383698 TGGGTGGGAAACAAACAGTAA 57.616 42.857 0.00 0.00 0.00 2.24
180 181 3.025262 GTTGGGTGGGAAACAAACAGTA 58.975 45.455 0.00 0.00 30.84 2.74
181 182 1.828595 GTTGGGTGGGAAACAAACAGT 59.171 47.619 0.00 0.00 30.84 3.55
182 183 1.827969 TGTTGGGTGGGAAACAAACAG 59.172 47.619 0.00 0.00 34.02 3.16
183 184 1.938585 TGTTGGGTGGGAAACAAACA 58.061 45.000 0.00 0.00 35.61 2.83
184 185 2.432510 TCATGTTGGGTGGGAAACAAAC 59.567 45.455 0.00 0.00 39.57 2.93
185 186 2.752030 TCATGTTGGGTGGGAAACAAA 58.248 42.857 0.00 0.00 39.57 2.83
186 187 2.461300 TCATGTTGGGTGGGAAACAA 57.539 45.000 0.00 0.00 39.57 2.83
187 188 2.432510 GTTTCATGTTGGGTGGGAAACA 59.567 45.455 9.84 0.00 44.02 2.83
188 189 2.698274 AGTTTCATGTTGGGTGGGAAAC 59.302 45.455 0.00 0.00 44.60 2.78
189 190 2.962421 GAGTTTCATGTTGGGTGGGAAA 59.038 45.455 0.00 0.00 0.00 3.13
190 191 2.091610 TGAGTTTCATGTTGGGTGGGAA 60.092 45.455 0.00 0.00 0.00 3.97
191 192 1.496857 TGAGTTTCATGTTGGGTGGGA 59.503 47.619 0.00 0.00 0.00 4.37
192 193 1.993956 TGAGTTTCATGTTGGGTGGG 58.006 50.000 0.00 0.00 0.00 4.61
193 194 4.335416 ACTATGAGTTTCATGTTGGGTGG 58.665 43.478 1.94 0.00 37.70 4.61
194 195 6.313905 GTCTACTATGAGTTTCATGTTGGGTG 59.686 42.308 1.94 0.00 37.70 4.61
195 196 6.013725 TGTCTACTATGAGTTTCATGTTGGGT 60.014 38.462 1.94 0.00 37.70 4.51
196 197 6.313905 GTGTCTACTATGAGTTTCATGTTGGG 59.686 42.308 1.94 0.00 37.70 4.12
197 198 6.313905 GGTGTCTACTATGAGTTTCATGTTGG 59.686 42.308 1.94 0.00 37.70 3.77
198 199 6.035005 CGGTGTCTACTATGAGTTTCATGTTG 59.965 42.308 1.94 1.09 37.70 3.33
199 200 6.100004 CGGTGTCTACTATGAGTTTCATGTT 58.900 40.000 1.94 0.00 37.70 2.71
200 201 5.394224 CCGGTGTCTACTATGAGTTTCATGT 60.394 44.000 0.00 1.85 37.70 3.21
201 202 5.043903 CCGGTGTCTACTATGAGTTTCATG 58.956 45.833 0.00 0.00 37.70 3.07
202 203 4.954202 TCCGGTGTCTACTATGAGTTTCAT 59.046 41.667 0.00 0.00 40.72 2.57
203 204 4.338012 TCCGGTGTCTACTATGAGTTTCA 58.662 43.478 0.00 0.00 0.00 2.69
204 205 4.639310 TCTCCGGTGTCTACTATGAGTTTC 59.361 45.833 0.00 0.00 0.00 2.78
205 206 4.597004 TCTCCGGTGTCTACTATGAGTTT 58.403 43.478 0.00 0.00 0.00 2.66
206 207 4.232188 TCTCCGGTGTCTACTATGAGTT 57.768 45.455 0.00 0.00 0.00 3.01
207 208 3.928005 TCTCCGGTGTCTACTATGAGT 57.072 47.619 0.00 0.00 0.00 3.41
208 209 4.390264 TCATCTCCGGTGTCTACTATGAG 58.610 47.826 0.00 0.00 0.00 2.90
209 210 4.432980 TCATCTCCGGTGTCTACTATGA 57.567 45.455 0.00 0.00 0.00 2.15
210 211 4.261656 GGTTCATCTCCGGTGTCTACTATG 60.262 50.000 0.00 0.00 0.00 2.23
211 212 3.890147 GGTTCATCTCCGGTGTCTACTAT 59.110 47.826 0.00 0.00 0.00 2.12
212 213 3.285484 GGTTCATCTCCGGTGTCTACTA 58.715 50.000 0.00 0.00 0.00 1.82
213 214 2.100989 GGTTCATCTCCGGTGTCTACT 58.899 52.381 0.00 0.00 0.00 2.57
214 215 1.202268 CGGTTCATCTCCGGTGTCTAC 60.202 57.143 0.00 0.00 43.68 2.59
215 216 1.100510 CGGTTCATCTCCGGTGTCTA 58.899 55.000 0.00 0.00 43.68 2.59
216 217 1.890894 CGGTTCATCTCCGGTGTCT 59.109 57.895 0.00 0.00 43.68 3.41
217 218 4.496670 CGGTTCATCTCCGGTGTC 57.503 61.111 0.00 0.00 43.68 3.67
222 223 3.409570 TCTACTATCCGGTTCATCTCCG 58.590 50.000 0.00 0.00 46.49 4.63
223 224 6.416415 TCTATCTACTATCCGGTTCATCTCC 58.584 44.000 0.00 0.00 0.00 3.71
224 225 9.048446 GTATCTATCTACTATCCGGTTCATCTC 57.952 40.741 0.00 0.00 0.00 2.75
225 226 8.774183 AGTATCTATCTACTATCCGGTTCATCT 58.226 37.037 0.00 0.00 30.16 2.90
226 227 8.967664 AGTATCTATCTACTATCCGGTTCATC 57.032 38.462 0.00 0.00 30.16 2.92
237 238 9.491675 GCCGCTATCAATAGTATCTATCTACTA 57.508 37.037 0.00 0.00 38.29 1.82
238 239 7.171848 CGCCGCTATCAATAGTATCTATCTACT 59.828 40.741 0.00 0.00 36.04 2.57
239 240 7.292292 CGCCGCTATCAATAGTATCTATCTAC 58.708 42.308 0.00 0.00 32.96 2.59
240 241 6.073167 GCGCCGCTATCAATAGTATCTATCTA 60.073 42.308 0.00 0.00 32.96 1.98
241 242 5.278071 GCGCCGCTATCAATAGTATCTATCT 60.278 44.000 0.00 0.00 32.96 1.98
242 243 4.912766 GCGCCGCTATCAATAGTATCTATC 59.087 45.833 0.00 0.00 32.96 2.08
243 244 4.261656 GGCGCCGCTATCAATAGTATCTAT 60.262 45.833 12.58 0.00 32.96 1.98
244 245 3.066342 GGCGCCGCTATCAATAGTATCTA 59.934 47.826 12.58 0.00 32.96 1.98
245 246 2.159226 GGCGCCGCTATCAATAGTATCT 60.159 50.000 12.58 0.00 32.96 1.98
246 247 2.194271 GGCGCCGCTATCAATAGTATC 58.806 52.381 12.58 0.00 32.96 2.24
247 248 1.469251 CGGCGCCGCTATCAATAGTAT 60.469 52.381 38.48 0.00 32.96 2.12
248 249 0.109458 CGGCGCCGCTATCAATAGTA 60.109 55.000 38.48 0.00 32.96 1.82
249 250 1.372997 CGGCGCCGCTATCAATAGT 60.373 57.895 38.48 0.00 32.96 2.12
250 251 0.458543 ATCGGCGCCGCTATCAATAG 60.459 55.000 42.78 14.41 39.59 1.73
251 252 0.812549 TATCGGCGCCGCTATCAATA 59.187 50.000 42.78 29.36 39.59 1.90
252 253 0.175760 ATATCGGCGCCGCTATCAAT 59.824 50.000 42.78 30.45 39.59 2.57
253 254 0.735978 CATATCGGCGCCGCTATCAA 60.736 55.000 42.78 26.04 39.59 2.57
254 255 1.153842 CATATCGGCGCCGCTATCA 60.154 57.895 42.78 26.86 39.59 2.15
255 256 0.099968 TACATATCGGCGCCGCTATC 59.900 55.000 42.78 6.47 39.59 2.08
256 257 0.179145 GTACATATCGGCGCCGCTAT 60.179 55.000 42.78 37.51 39.59 2.97
257 258 1.210931 GTACATATCGGCGCCGCTA 59.789 57.895 42.78 37.05 39.59 4.26
258 259 2.049433 GTACATATCGGCGCCGCT 60.049 61.111 42.78 36.10 39.59 5.52
259 260 3.110178 GGTACATATCGGCGCCGC 61.110 66.667 42.78 26.41 39.59 6.53
260 261 2.431942 GGGTACATATCGGCGCCG 60.432 66.667 42.13 42.13 41.35 6.46
261 262 2.047560 GGGGTACATATCGGCGCC 60.048 66.667 19.07 19.07 0.00 6.53
262 263 1.666872 GTGGGGTACATATCGGCGC 60.667 63.158 0.00 0.00 0.00 6.53
263 264 0.105224 TTGTGGGGTACATATCGGCG 59.895 55.000 0.00 0.00 39.48 6.46
264 265 1.589803 GTTGTGGGGTACATATCGGC 58.410 55.000 0.00 0.00 39.48 5.54
265 266 1.487142 TGGTTGTGGGGTACATATCGG 59.513 52.381 0.00 0.00 39.48 4.18
266 267 2.992124 TGGTTGTGGGGTACATATCG 57.008 50.000 0.00 0.00 39.48 2.92
267 268 5.445964 AGAAATGGTTGTGGGGTACATATC 58.554 41.667 0.00 0.00 39.48 1.63
268 269 5.466127 AGAAATGGTTGTGGGGTACATAT 57.534 39.130 0.00 0.00 39.48 1.78
269 270 4.938575 AGAAATGGTTGTGGGGTACATA 57.061 40.909 0.00 0.00 39.48 2.29
270 271 3.825908 AGAAATGGTTGTGGGGTACAT 57.174 42.857 0.00 0.00 39.48 2.29
271 272 4.324719 GGATAGAAATGGTTGTGGGGTACA 60.325 45.833 0.00 0.00 37.56 2.90
272 273 4.204799 GGATAGAAATGGTTGTGGGGTAC 58.795 47.826 0.00 0.00 0.00 3.34
273 274 3.203487 GGGATAGAAATGGTTGTGGGGTA 59.797 47.826 0.00 0.00 0.00 3.69
274 275 2.024369 GGGATAGAAATGGTTGTGGGGT 60.024 50.000 0.00 0.00 0.00 4.95
275 276 2.244769 AGGGATAGAAATGGTTGTGGGG 59.755 50.000 0.00 0.00 0.00 4.96
276 277 3.669939 AGGGATAGAAATGGTTGTGGG 57.330 47.619 0.00 0.00 0.00 4.61
277 278 8.940397 ATTATTAGGGATAGAAATGGTTGTGG 57.060 34.615 0.00 0.00 0.00 4.17
285 286 9.449719 CCGTGCTTTATTATTAGGGATAGAAAT 57.550 33.333 0.00 0.00 0.00 2.17
286 287 8.653191 TCCGTGCTTTATTATTAGGGATAGAAA 58.347 33.333 0.00 0.00 0.00 2.52
287 288 8.092687 GTCCGTGCTTTATTATTAGGGATAGAA 58.907 37.037 0.00 0.00 0.00 2.10
288 289 7.453752 AGTCCGTGCTTTATTATTAGGGATAGA 59.546 37.037 0.00 0.00 0.00 1.98
289 290 7.545965 CAGTCCGTGCTTTATTATTAGGGATAG 59.454 40.741 0.00 0.00 0.00 2.08
290 291 7.233962 TCAGTCCGTGCTTTATTATTAGGGATA 59.766 37.037 0.00 0.00 0.00 2.59
291 292 6.042781 TCAGTCCGTGCTTTATTATTAGGGAT 59.957 38.462 0.00 0.00 0.00 3.85
292 293 5.364446 TCAGTCCGTGCTTTATTATTAGGGA 59.636 40.000 0.00 0.00 0.00 4.20
293 294 5.465724 GTCAGTCCGTGCTTTATTATTAGGG 59.534 44.000 0.00 0.00 0.00 3.53
294 295 6.281405 AGTCAGTCCGTGCTTTATTATTAGG 58.719 40.000 0.00 0.00 0.00 2.69
295 296 6.421202 GGAGTCAGTCCGTGCTTTATTATTAG 59.579 42.308 0.00 0.00 34.84 1.73
296 297 6.278363 GGAGTCAGTCCGTGCTTTATTATTA 58.722 40.000 0.00 0.00 34.84 0.98
297 298 5.116882 GGAGTCAGTCCGTGCTTTATTATT 58.883 41.667 0.00 0.00 34.84 1.40
298 299 4.694339 GGAGTCAGTCCGTGCTTTATTAT 58.306 43.478 0.00 0.00 34.84 1.28
299 300 4.119442 GGAGTCAGTCCGTGCTTTATTA 57.881 45.455 0.00 0.00 34.84 0.98
300 301 2.973945 GGAGTCAGTCCGTGCTTTATT 58.026 47.619 0.00 0.00 34.84 1.40
301 302 2.674796 GGAGTCAGTCCGTGCTTTAT 57.325 50.000 0.00 0.00 34.84 1.40
310 311 1.292541 GAACCCACGGAGTCAGTCC 59.707 63.158 0.00 0.00 41.61 3.85
311 312 0.319641 GTGAACCCACGGAGTCAGTC 60.320 60.000 0.00 0.00 41.61 3.51
312 313 1.746517 GTGAACCCACGGAGTCAGT 59.253 57.895 0.00 0.00 41.61 3.41
313 314 1.004918 GGTGAACCCACGGAGTCAG 60.005 63.158 0.00 0.00 41.61 3.51
314 315 2.863346 CGGTGAACCCACGGAGTCA 61.863 63.158 0.00 0.00 41.61 3.41
315 316 2.048503 CGGTGAACCCACGGAGTC 60.049 66.667 0.00 0.00 41.61 3.36
317 318 2.048503 GACGGTGAACCCACGGAG 60.049 66.667 9.54 0.00 43.69 4.63
318 319 2.838693 TGACGGTGAACCCACGGA 60.839 61.111 9.54 0.00 43.69 4.69
319 320 2.663852 GTGACGGTGAACCCACGG 60.664 66.667 0.00 0.00 44.09 4.94
320 321 0.882927 ATTGTGACGGTGAACCCACG 60.883 55.000 0.00 0.00 44.09 4.94
321 322 1.802365 GTATTGTGACGGTGAACCCAC 59.198 52.381 2.84 2.84 42.46 4.61
322 323 1.605968 CGTATTGTGACGGTGAACCCA 60.606 52.381 0.00 0.00 39.19 4.51
323 324 1.073177 CGTATTGTGACGGTGAACCC 58.927 55.000 0.00 0.00 39.19 4.11
324 325 0.441145 GCGTATTGTGACGGTGAACC 59.559 55.000 0.00 0.00 43.13 3.62
325 326 3.941194 GCGTATTGTGACGGTGAAC 57.059 52.632 0.00 0.00 43.13 3.18
330 331 3.432252 AGAAAGAAAGCGTATTGTGACGG 59.568 43.478 0.00 0.00 43.13 4.79
331 332 4.084537 ACAGAAAGAAAGCGTATTGTGACG 60.085 41.667 0.00 0.00 45.70 4.35
332 333 5.344207 ACAGAAAGAAAGCGTATTGTGAC 57.656 39.130 0.00 0.00 0.00 3.67
333 334 7.485418 TTTACAGAAAGAAAGCGTATTGTGA 57.515 32.000 0.00 0.00 0.00 3.58
334 335 8.728088 AATTTACAGAAAGAAAGCGTATTGTG 57.272 30.769 0.00 0.00 0.00 3.33
337 338 9.537848 CGTAAATTTACAGAAAGAAAGCGTATT 57.462 29.630 24.27 0.00 33.28 1.89
338 339 7.691050 GCGTAAATTTACAGAAAGAAAGCGTAT 59.309 33.333 24.27 0.00 33.28 3.06
339 340 7.011189 GCGTAAATTTACAGAAAGAAAGCGTA 58.989 34.615 24.27 0.00 33.28 4.42
340 341 5.849604 GCGTAAATTTACAGAAAGAAAGCGT 59.150 36.000 24.27 0.00 33.28 5.07
341 342 6.077838 AGCGTAAATTTACAGAAAGAAAGCG 58.922 36.000 24.27 9.76 33.28 4.68
342 343 7.803659 AGAAGCGTAAATTTACAGAAAGAAAGC 59.196 33.333 24.27 16.48 33.28 3.51
345 346 9.485206 ACTAGAAGCGTAAATTTACAGAAAGAA 57.515 29.630 24.27 6.59 33.28 2.52
346 347 9.485206 AACTAGAAGCGTAAATTTACAGAAAGA 57.515 29.630 24.27 7.65 33.28 2.52
348 349 9.872757 CAAACTAGAAGCGTAAATTTACAGAAA 57.127 29.630 24.27 6.94 33.28 2.52
349 350 9.263538 TCAAACTAGAAGCGTAAATTTACAGAA 57.736 29.630 24.27 6.07 33.28 3.02
350 351 8.821147 TCAAACTAGAAGCGTAAATTTACAGA 57.179 30.769 24.27 5.31 33.28 3.41
369 370 9.485591 CTCGCGTATATGTTTTAAATTCAAACT 57.514 29.630 5.77 3.99 35.50 2.66
370 371 8.730427 CCTCGCGTATATGTTTTAAATTCAAAC 58.270 33.333 5.77 6.34 35.11 2.93
371 372 8.452534 ACCTCGCGTATATGTTTTAAATTCAAA 58.547 29.630 5.77 0.00 0.00 2.69
372 373 7.906010 CACCTCGCGTATATGTTTTAAATTCAA 59.094 33.333 5.77 0.00 0.00 2.69
373 374 7.403421 CACCTCGCGTATATGTTTTAAATTCA 58.597 34.615 5.77 0.00 0.00 2.57
374 375 6.849305 CCACCTCGCGTATATGTTTTAAATTC 59.151 38.462 5.77 0.00 0.00 2.17
375 376 6.316890 ACCACCTCGCGTATATGTTTTAAATT 59.683 34.615 5.77 0.00 0.00 1.82
376 377 5.818857 ACCACCTCGCGTATATGTTTTAAAT 59.181 36.000 5.77 0.00 0.00 1.40
377 378 5.177326 ACCACCTCGCGTATATGTTTTAAA 58.823 37.500 5.77 0.00 0.00 1.52
378 379 4.757594 ACCACCTCGCGTATATGTTTTAA 58.242 39.130 5.77 0.00 0.00 1.52
379 380 4.389890 ACCACCTCGCGTATATGTTTTA 57.610 40.909 5.77 0.00 0.00 1.52
380 381 3.255969 ACCACCTCGCGTATATGTTTT 57.744 42.857 5.77 0.00 0.00 2.43
381 382 2.973694 ACCACCTCGCGTATATGTTT 57.026 45.000 5.77 0.00 0.00 2.83
382 383 2.954318 AGTACCACCTCGCGTATATGTT 59.046 45.455 5.77 0.00 0.00 2.71
383 384 2.579873 AGTACCACCTCGCGTATATGT 58.420 47.619 5.77 2.15 0.00 2.29
384 385 4.754372 TTAGTACCACCTCGCGTATATG 57.246 45.455 5.77 0.40 0.00 1.78
385 386 5.391310 CGAATTAGTACCACCTCGCGTATAT 60.391 44.000 5.77 0.00 0.00 0.86
386 387 4.083855 CGAATTAGTACCACCTCGCGTATA 60.084 45.833 5.77 0.00 0.00 1.47
387 388 3.304257 CGAATTAGTACCACCTCGCGTAT 60.304 47.826 5.77 0.00 0.00 3.06
388 389 2.032054 CGAATTAGTACCACCTCGCGTA 59.968 50.000 5.77 0.00 0.00 4.42
389 390 1.202222 CGAATTAGTACCACCTCGCGT 60.202 52.381 5.77 0.00 0.00 6.01
390 391 1.474017 CGAATTAGTACCACCTCGCG 58.526 55.000 0.00 0.00 0.00 5.87
391 392 1.537562 CCCGAATTAGTACCACCTCGC 60.538 57.143 0.00 0.00 0.00 5.03
392 393 1.068127 CCCCGAATTAGTACCACCTCG 59.932 57.143 0.00 0.00 0.00 4.63
393 394 2.391678 TCCCCGAATTAGTACCACCTC 58.608 52.381 0.00 0.00 0.00 3.85
394 395 2.502947 GTTCCCCGAATTAGTACCACCT 59.497 50.000 0.00 0.00 0.00 4.00
395 396 2.420547 GGTTCCCCGAATTAGTACCACC 60.421 54.545 0.00 0.00 0.00 4.61
396 397 2.236893 TGGTTCCCCGAATTAGTACCAC 59.763 50.000 0.00 0.00 29.78 4.16
397 398 2.549082 TGGTTCCCCGAATTAGTACCA 58.451 47.619 0.00 0.00 32.16 3.25
398 399 3.118149 ACATGGTTCCCCGAATTAGTACC 60.118 47.826 0.00 0.00 0.00 3.34
399 400 4.124970 GACATGGTTCCCCGAATTAGTAC 58.875 47.826 0.00 0.00 0.00 2.73
400 401 3.181473 CGACATGGTTCCCCGAATTAGTA 60.181 47.826 0.00 0.00 0.00 1.82
401 402 2.419574 CGACATGGTTCCCCGAATTAGT 60.420 50.000 0.00 0.00 0.00 2.24
402 403 2.210116 CGACATGGTTCCCCGAATTAG 58.790 52.381 0.00 0.00 0.00 1.73
403 404 1.555992 ACGACATGGTTCCCCGAATTA 59.444 47.619 0.00 0.00 0.00 1.40
404 405 0.326927 ACGACATGGTTCCCCGAATT 59.673 50.000 0.00 0.00 0.00 2.17
405 406 0.392461 CACGACATGGTTCCCCGAAT 60.392 55.000 0.00 0.00 0.00 3.34
406 407 1.004320 CACGACATGGTTCCCCGAA 60.004 57.895 0.00 0.00 0.00 4.30
407 408 2.211410 ACACGACATGGTTCCCCGA 61.211 57.895 0.00 0.00 0.00 5.14
408 409 2.032634 CACACGACATGGTTCCCCG 61.033 63.158 0.00 0.00 0.00 5.73
409 410 2.332654 GCACACGACATGGTTCCCC 61.333 63.158 0.00 0.00 0.00 4.81
410 411 0.960364 ATGCACACGACATGGTTCCC 60.960 55.000 0.00 0.00 0.00 3.97
411 412 0.447801 GATGCACACGACATGGTTCC 59.552 55.000 0.00 0.00 0.00 3.62
412 413 0.095245 CGATGCACACGACATGGTTC 59.905 55.000 9.10 0.00 0.00 3.62
413 414 0.320334 TCGATGCACACGACATGGTT 60.320 50.000 12.66 0.00 34.85 3.67
414 415 0.320334 TTCGATGCACACGACATGGT 60.320 50.000 15.60 0.00 39.46 3.55
415 416 0.095245 GTTCGATGCACACGACATGG 59.905 55.000 15.60 0.00 39.46 3.66
416 417 0.246873 CGTTCGATGCACACGACATG 60.247 55.000 15.60 9.79 39.46 3.21
417 418 0.388006 TCGTTCGATGCACACGACAT 60.388 50.000 15.60 0.00 38.00 3.06
418 419 0.388006 ATCGTTCGATGCACACGACA 60.388 50.000 15.60 6.62 45.15 4.35
419 420 0.294887 GATCGTTCGATGCACACGAC 59.705 55.000 15.60 10.76 45.15 4.34
420 421 2.648972 GATCGTTCGATGCACACGA 58.351 52.632 12.42 11.28 46.29 4.35
439 440 4.432741 GGGGAAGGGAGCAGGTGC 62.433 72.222 0.00 0.00 42.49 5.01
440 441 2.935481 TGGGGAAGGGAGCAGGTG 60.935 66.667 0.00 0.00 0.00 4.00
441 442 2.612115 CTGGGGAAGGGAGCAGGT 60.612 66.667 0.00 0.00 0.00 4.00
442 443 2.285668 TCTGGGGAAGGGAGCAGG 60.286 66.667 0.00 0.00 0.00 4.85
443 444 1.614824 AGTCTGGGGAAGGGAGCAG 60.615 63.158 0.00 0.00 0.00 4.24
444 445 1.613630 GAGTCTGGGGAAGGGAGCA 60.614 63.158 0.00 0.00 0.00 4.26
445 446 2.371259 GGAGTCTGGGGAAGGGAGC 61.371 68.421 0.00 0.00 0.00 4.70
446 447 1.690985 GGGAGTCTGGGGAAGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
447 448 0.858598 TAGGGAGTCTGGGGAAGGGA 60.859 60.000 0.00 0.00 0.00 4.20
448 449 0.269173 ATAGGGAGTCTGGGGAAGGG 59.731 60.000 0.00 0.00 0.00 3.95
449 450 3.569135 ATATAGGGAGTCTGGGGAAGG 57.431 52.381 0.00 0.00 0.00 3.46
497 498 1.585521 CCTCGAGCGCGTACGAAAT 60.586 57.895 21.65 2.39 43.93 2.17
519 520 0.037326 TTCGCTCGAGACAAAGGCAT 60.037 50.000 18.75 0.00 0.00 4.40
520 521 0.037326 ATTCGCTCGAGACAAAGGCA 60.037 50.000 18.75 0.00 0.00 4.75
560 561 2.682494 GTGGGGTCCGGCTGTAGA 60.682 66.667 0.00 0.00 0.00 2.59
655 656 1.227812 AGGGGATTGGAGGATGGATCT 59.772 52.381 0.00 0.00 0.00 2.75
668 669 0.985490 GGAGCCAGAGACAGGGGATT 60.985 60.000 0.00 0.00 0.00 3.01
675 676 1.000993 GGAGAGGGAGCCAGAGACA 59.999 63.158 0.00 0.00 0.00 3.41
682 683 2.766229 GGGTCAGGAGAGGGAGCC 60.766 72.222 0.00 0.00 43.58 4.70
694 695 1.177401 CGTGAGAGAGATGTGGGTCA 58.823 55.000 0.00 0.00 0.00 4.02
816 817 2.365237 GGAGAGGGCGGTAGGGTT 60.365 66.667 0.00 0.00 0.00 4.11
834 836 0.324368 ATCGGTGTAGAGCTCCCACA 60.324 55.000 26.45 20.64 0.00 4.17
849 851 3.401411 GCAGCGCTCGATCATCGG 61.401 66.667 7.13 0.00 40.88 4.18
853 855 4.519437 CCCTGCAGCGCTCGATCA 62.519 66.667 7.13 2.14 0.00 2.92
872 874 1.424638 CGTGGGATAGGAGGACCAAT 58.575 55.000 0.00 0.00 38.94 3.16
985 987 4.758251 CATGGTGGCCTGCGTCGA 62.758 66.667 3.32 0.00 0.00 4.20
1039 1041 4.774124 CAATGCTGGTTTCCTAGATCAGA 58.226 43.478 0.00 0.00 0.00 3.27
1041 1043 3.282021 GCAATGCTGGTTTCCTAGATCA 58.718 45.455 0.00 0.00 0.00 2.92
1163 1165 4.625028 GTGCCTTGAGATCAAAAAGCTTT 58.375 39.130 5.69 5.69 35.15 3.51
1192 1194 2.031163 GCAGCTCGTCCAACCTGT 59.969 61.111 0.00 0.00 0.00 4.00
1389 1391 3.366396 TGAGACAGGGAAGACAGGATAC 58.634 50.000 0.00 0.00 0.00 2.24
1456 1458 8.946085 ACAATGTTTCGACAGTATATGACAAAT 58.054 29.630 0.00 0.00 0.00 2.32
1617 1619 6.402981 ACAGTCCCTTCCCAATTAACTAAT 57.597 37.500 0.00 0.00 0.00 1.73
1676 1678 2.823924 TGCGTCTACTTTGCCTACAA 57.176 45.000 0.00 0.00 0.00 2.41
1716 1718 8.908903 CCTAACTGTCTCTCATTTATCTAGTGT 58.091 37.037 0.00 0.00 0.00 3.55
1729 1731 3.068873 CCTATGCCACCTAACTGTCTCTC 59.931 52.174 0.00 0.00 0.00 3.20
1730 1732 3.034635 CCTATGCCACCTAACTGTCTCT 58.965 50.000 0.00 0.00 0.00 3.10
1739 1743 6.763715 AGATATTTTCACCTATGCCACCTA 57.236 37.500 0.00 0.00 0.00 3.08
2001 2005 7.921214 ACAGTGTATAACCAGTAATCAGAATCG 59.079 37.037 0.00 0.00 0.00 3.34
2038 2042 6.829849 ACAAAATTGATCCCAACTGAACAAT 58.170 32.000 0.00 0.00 38.80 2.71
2057 2061 6.509418 AACAGAGCAAGTGAACTTACAAAA 57.491 33.333 0.00 0.00 34.28 2.44
2063 2067 5.293560 GTCTCTAACAGAGCAAGTGAACTT 58.706 41.667 0.00 0.00 42.04 2.66
2103 2107 7.040548 TGACATATGAAATGTGCTTCTTTCACA 60.041 33.333 10.38 0.00 46.86 3.58
2145 2149 3.879295 CACACAGAAACAACATCTCCTGT 59.121 43.478 0.00 0.00 40.84 4.00
2371 2375 1.135546 CGTGTCTCTCTGCATCGAAGT 60.136 52.381 0.00 0.00 0.00 3.01
2389 2393 2.217510 TGGCTAAGAGGAGAGTTCGT 57.782 50.000 0.00 0.00 0.00 3.85
2409 2413 3.455910 TGGCTATGGCTTACTTCATGTCT 59.544 43.478 0.00 0.00 38.73 3.41
2430 2434 5.163723 GGTGATCATGTGTTGGTGTTCTATG 60.164 44.000 0.00 0.00 0.00 2.23
2432 2436 4.323417 GGTGATCATGTGTTGGTGTTCTA 58.677 43.478 0.00 0.00 0.00 2.10
2438 2442 1.887956 GCAGGGTGATCATGTGTTGGT 60.888 52.381 0.00 0.00 0.00 3.67
2444 2448 1.701847 GATAGGGCAGGGTGATCATGT 59.298 52.381 0.00 0.00 0.00 3.21
2446 2450 2.123018 TGATAGGGCAGGGTGATCAT 57.877 50.000 0.00 0.00 0.00 2.45
2447 2451 2.123018 ATGATAGGGCAGGGTGATCA 57.877 50.000 0.00 0.00 0.00 2.92
2448 2452 3.177228 AGTATGATAGGGCAGGGTGATC 58.823 50.000 0.00 0.00 0.00 2.92
2518 2542 2.307363 CGGGCATTCGCTAATTCGT 58.693 52.632 0.00 0.00 38.60 3.85
2539 2563 3.493002 CGTCCTGGTGTGTTGTTAGGTTA 60.493 47.826 0.00 0.00 0.00 2.85
2573 2597 9.803130 CAATATGCAAGAGAACTATAATTGACG 57.197 33.333 0.00 0.00 0.00 4.35
2633 2660 4.634199 GCATGGCTATTTTATGCAACCAT 58.366 39.130 0.00 0.00 44.88 3.55
2695 2722 5.057149 AGCGTAAACAAAAGAGAGTGTGAT 58.943 37.500 0.00 0.00 0.00 3.06
2806 2834 0.949105 GACGAATGTGGCTGGACGTT 60.949 55.000 0.00 0.00 34.26 3.99
2885 2914 5.122707 TCCTATGGTTGGATGCAAATGTA 57.877 39.130 0.00 0.00 0.00 2.29
2983 3012 6.486657 CCAGACTTGAACTTGAGGACAATTTA 59.513 38.462 0.00 0.00 35.37 1.40
3008 3037 8.839310 AATCTCACATGCCTATATAAACAGAC 57.161 34.615 0.00 0.00 0.00 3.51
3034 3063 4.072131 ACCAGTATGAACAAATTCGCTGT 58.928 39.130 0.00 0.00 39.69 4.40
3051 3080 6.491403 AGCAACATCAATTAGAAAGAACCAGT 59.509 34.615 0.00 0.00 0.00 4.00
3056 3085 6.942005 TGAGGAGCAACATCAATTAGAAAGAA 59.058 34.615 0.00 0.00 36.35 2.52
3092 3124 0.979665 CCGCCCATATGAGGATCTGT 59.020 55.000 3.65 0.00 34.92 3.41
3119 3151 2.417243 GCAGCAACGATTGGCCTAATTT 60.417 45.455 3.32 0.00 0.00 1.82
3128 3160 0.520404 AGCAAGAGCAGCAACGATTG 59.480 50.000 0.00 0.00 45.49 2.67
3152 3184 4.040755 AGTCCACTCATGGCCTAGTTATT 58.959 43.478 3.32 0.00 46.80 1.40
3206 3238 0.187117 TGATTTGTGGAGGTGGCCAA 59.813 50.000 7.24 0.00 40.20 4.52
3260 3292 4.671831 TGAGGCCAAAGGAATCAAACATA 58.328 39.130 5.01 0.00 0.00 2.29
3261 3293 3.509442 TGAGGCCAAAGGAATCAAACAT 58.491 40.909 5.01 0.00 0.00 2.71
3275 3734 3.161866 TGTATACGATAGCATGAGGCCA 58.838 45.455 5.01 0.00 46.50 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.