Multiple sequence alignment - TraesCS5A01G290300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G290300 chr5A 100.000 4437 0 0 1 4437 498010736 498015172 0.000000e+00 8194.0
1 TraesCS5A01G290300 chr5A 87.052 3182 345 63 1282 4424 357553648 357556801 0.000000e+00 3531.0
2 TraesCS5A01G290300 chr5A 88.806 536 49 10 158 690 508018896 508019423 0.000000e+00 647.0
3 TraesCS5A01G290300 chr5A 77.979 663 82 52 1 649 576388138 576388750 1.520000e-94 357.0
4 TraesCS5A01G290300 chr5A 90.157 254 24 1 931 1184 498034049 498034301 3.310000e-86 329.0
5 TraesCS5A01G290300 chr5A 77.871 357 49 23 1 346 160728066 160728403 1.260000e-45 195.0
6 TraesCS5A01G290300 chr5D 87.940 3151 314 59 1314 4424 33159884 33163008 0.000000e+00 3653.0
7 TraesCS5A01G290300 chr5D 90.698 387 35 1 677 1062 130625444 130625058 8.510000e-142 514.0
8 TraesCS5A01G290300 chr5D 90.966 321 26 2 677 994 130617395 130617075 3.170000e-116 429.0
9 TraesCS5A01G290300 chr7D 88.256 3091 285 68 1360 4399 476000423 475997360 0.000000e+00 3626.0
10 TraesCS5A01G290300 chr7D 88.096 3083 303 59 1360 4399 412504781 412501720 0.000000e+00 3602.0
11 TraesCS5A01G290300 chr2A 87.967 3108 310 57 1359 4434 312381182 312384257 0.000000e+00 3609.0
12 TraesCS5A01G290300 chr2A 82.069 435 51 20 1 430 249919612 249920024 3.290000e-91 346.0
13 TraesCS5A01G290300 chr2A 80.785 484 55 27 1 469 249927497 249927957 1.180000e-90 344.0
14 TraesCS5A01G290300 chr2A 86.726 113 12 3 1 112 554351503 554351393 6.030000e-24 122.0
15 TraesCS5A01G290300 chr2A 86.517 89 8 4 1065 1151 515021047 515021133 1.310000e-15 95.3
16 TraesCS5A01G290300 chr4D 87.728 3129 304 66 1360 4434 329206182 329209284 0.000000e+00 3578.0
17 TraesCS5A01G290300 chr4D 84.895 2423 289 54 1314 3699 204463367 204460985 0.000000e+00 2375.0
18 TraesCS5A01G290300 chr4D 81.320 2516 360 92 1252 3697 158504438 158501963 0.000000e+00 1941.0
19 TraesCS5A01G290300 chr4D 88.487 608 53 17 1360 1957 298566969 298567569 0.000000e+00 719.0
20 TraesCS5A01G290300 chr4D 91.473 387 29 3 674 1056 273592449 273592835 3.040000e-146 529.0
21 TraesCS5A01G290300 chr4D 91.237 388 29 3 674 1056 273546671 273547058 1.410000e-144 523.0
22 TraesCS5A01G290300 chr4D 90.231 389 37 1 674 1062 247143178 247142791 1.420000e-139 507.0
23 TraesCS5A01G290300 chr4D 89.203 389 35 4 674 1056 163131865 163132252 3.100000e-131 479.0
24 TraesCS5A01G290300 chr4D 89.003 391 35 6 674 1056 163124286 163124676 1.120000e-130 477.0
25 TraesCS5A01G290300 chr4D 93.436 259 15 2 189 445 247928020 247928278 2.500000e-102 383.0
26 TraesCS5A01G290300 chr2D 87.729 3113 308 63 1360 4424 156930457 156933543 0.000000e+00 3565.0
27 TraesCS5A01G290300 chr2D 90.196 306 27 2 674 976 431289077 431289382 3.220000e-106 396.0
28 TraesCS5A01G290300 chr3D 87.620 3126 311 68 1360 4434 206436276 206433176 0.000000e+00 3559.0
29 TraesCS5A01G290300 chr3D 86.974 3186 341 65 1264 4399 409517381 409520542 0.000000e+00 3517.0
30 TraesCS5A01G290300 chr3A 88.785 535 49 9 160 690 232649493 232650020 0.000000e+00 645.0
31 TraesCS5A01G290300 chr3A 88.302 530 51 10 160 687 232674175 232674695 3.770000e-175 625.0
32 TraesCS5A01G290300 chr3A 86.891 534 58 11 160 690 232656196 232656720 4.940000e-164 588.0
33 TraesCS5A01G290300 chr3A 76.506 664 94 49 1 649 387258656 387259272 5.580000e-79 305.0
34 TraesCS5A01G290300 chr3A 75.610 328 54 20 1 322 400342417 400342724 5.980000e-29 139.0
35 TraesCS5A01G290300 chr3A 89.189 111 8 4 1 108 280014110 280014219 7.740000e-28 135.0
36 TraesCS5A01G290300 chr3A 97.059 34 1 0 1080 1113 138732494 138732527 1.720000e-04 58.4
37 TraesCS5A01G290300 chr5B 78.188 949 144 45 1047 1951 456787833 456786904 8.390000e-152 547.0
38 TraesCS5A01G290300 chr6D 90.885 384 34 1 674 1056 188591229 188591612 8.510000e-142 514.0
39 TraesCS5A01G290300 chr6D 81.690 142 25 1 1046 1186 210505859 210506000 2.800000e-22 117.0
40 TraesCS5A01G290300 chr6D 78.528 163 31 4 1264 1425 278369535 278369376 2.180000e-18 104.0
41 TraesCS5A01G290300 chr7A 82.364 550 66 23 1 546 227825063 227825585 2.430000e-122 449.0
42 TraesCS5A01G290300 chr7A 88.768 276 25 6 181 454 321978418 321978689 2.560000e-87 333.0
43 TraesCS5A01G290300 chr7A 75.342 438 76 26 1 428 298742965 298742550 9.800000e-42 182.0
44 TraesCS5A01G290300 chr7A 76.261 337 48 24 1 322 354278703 354279022 2.760000e-32 150.0
45 TraesCS5A01G290300 chr7A 91.525 59 4 1 4377 4434 479119651 479119593 3.680000e-11 80.5
46 TraesCS5A01G290300 chr7A 86.792 53 5 2 1080 1130 561543997 561543945 1.720000e-04 58.4
47 TraesCS5A01G290300 chr7A 96.875 32 1 0 1080 1111 561526600 561526569 2.000000e-03 54.7
48 TraesCS5A01G290300 chr4A 78.517 661 84 45 1 649 481440678 481441292 9.010000e-102 381.0
49 TraesCS5A01G290300 chr4A 77.912 661 86 48 1 649 481448627 481449239 1.520000e-94 357.0
50 TraesCS5A01G290300 chr4A 89.815 216 17 4 439 649 309056531 309056746 5.660000e-69 272.0
51 TraesCS5A01G290300 chr4A 94.048 84 4 1 1 84 296507073 296507155 4.660000e-25 126.0
52 TraesCS5A01G290300 chr1A 76.543 405 59 28 1 389 119580003 119579619 5.860000e-44 189.0
53 TraesCS5A01G290300 chr6A 86.726 113 11 4 1 111 298357933 298357823 6.030000e-24 122.0
54 TraesCS5A01G290300 chr1B 90.909 55 3 1 1079 1131 18179306 18179360 6.160000e-09 73.1
55 TraesCS5A01G290300 chr1B 97.436 39 1 0 4399 4437 216014475 216014437 2.860000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G290300 chr5A 498010736 498015172 4436 False 8194 8194 100.000 1 4437 1 chr5A.!!$F3 4436
1 TraesCS5A01G290300 chr5A 357553648 357556801 3153 False 3531 3531 87.052 1282 4424 1 chr5A.!!$F2 3142
2 TraesCS5A01G290300 chr5A 508018896 508019423 527 False 647 647 88.806 158 690 1 chr5A.!!$F5 532
3 TraesCS5A01G290300 chr5A 576388138 576388750 612 False 357 357 77.979 1 649 1 chr5A.!!$F6 648
4 TraesCS5A01G290300 chr5D 33159884 33163008 3124 False 3653 3653 87.940 1314 4424 1 chr5D.!!$F1 3110
5 TraesCS5A01G290300 chr7D 475997360 476000423 3063 True 3626 3626 88.256 1360 4399 1 chr7D.!!$R2 3039
6 TraesCS5A01G290300 chr7D 412501720 412504781 3061 True 3602 3602 88.096 1360 4399 1 chr7D.!!$R1 3039
7 TraesCS5A01G290300 chr2A 312381182 312384257 3075 False 3609 3609 87.967 1359 4434 1 chr2A.!!$F3 3075
8 TraesCS5A01G290300 chr4D 329206182 329209284 3102 False 3578 3578 87.728 1360 4434 1 chr4D.!!$F7 3074
9 TraesCS5A01G290300 chr4D 204460985 204463367 2382 True 2375 2375 84.895 1314 3699 1 chr4D.!!$R2 2385
10 TraesCS5A01G290300 chr4D 158501963 158504438 2475 True 1941 1941 81.320 1252 3697 1 chr4D.!!$R1 2445
11 TraesCS5A01G290300 chr4D 298566969 298567569 600 False 719 719 88.487 1360 1957 1 chr4D.!!$F6 597
12 TraesCS5A01G290300 chr2D 156930457 156933543 3086 False 3565 3565 87.729 1360 4424 1 chr2D.!!$F1 3064
13 TraesCS5A01G290300 chr3D 206433176 206436276 3100 True 3559 3559 87.620 1360 4434 1 chr3D.!!$R1 3074
14 TraesCS5A01G290300 chr3D 409517381 409520542 3161 False 3517 3517 86.974 1264 4399 1 chr3D.!!$F1 3135
15 TraesCS5A01G290300 chr3A 232649493 232650020 527 False 645 645 88.785 160 690 1 chr3A.!!$F2 530
16 TraesCS5A01G290300 chr3A 232674175 232674695 520 False 625 625 88.302 160 687 1 chr3A.!!$F4 527
17 TraesCS5A01G290300 chr3A 232656196 232656720 524 False 588 588 86.891 160 690 1 chr3A.!!$F3 530
18 TraesCS5A01G290300 chr3A 387258656 387259272 616 False 305 305 76.506 1 649 1 chr3A.!!$F6 648
19 TraesCS5A01G290300 chr5B 456786904 456787833 929 True 547 547 78.188 1047 1951 1 chr5B.!!$R1 904
20 TraesCS5A01G290300 chr7A 227825063 227825585 522 False 449 449 82.364 1 546 1 chr7A.!!$F1 545
21 TraesCS5A01G290300 chr4A 481440678 481441292 614 False 381 381 78.517 1 649 1 chr4A.!!$F3 648
22 TraesCS5A01G290300 chr4A 481448627 481449239 612 False 357 357 77.912 1 649 1 chr4A.!!$F4 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 774 0.032615 TGGCCCTCTCTCTCTCCTTC 60.033 60.0 0.00 0.00 0.00 3.46 F
767 796 0.036858 AGGAACAAGAAGGAGCTCGC 60.037 55.0 7.83 0.47 0.00 5.03 F
879 908 0.039437 CTGCGTCTCAAGTACCGTGT 60.039 55.0 0.00 0.00 0.00 4.49 F
880 909 0.039798 TGCGTCTCAAGTACCGTGTC 60.040 55.0 0.00 0.00 0.00 3.67 F
1169 1223 0.103208 CTAGGTCTAGCCGTGCCAAG 59.897 60.0 0.00 0.00 43.70 3.61 F
1902 1972 0.320946 GCACTTTGCCATGCCATGTT 60.321 50.0 3.63 0.00 37.42 2.71 F
2955 3117 0.381801 CTTGCAAAAGTCGTGCCTGT 59.618 50.0 0.00 0.00 41.49 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2178 0.517316 CCCGCAAGAAAGAAGAACGG 59.483 55.000 0.0 0.0 43.02 4.44 R
2642 2799 1.120530 AGTTCGGACCAACACTCAGT 58.879 50.000 0.0 0.0 0.00 3.41 R
2782 2941 1.452145 GACCAACAAAGCTGCCCGAA 61.452 55.000 0.0 0.0 0.00 4.30 R
2789 2948 4.464597 TGGTAAAACAAGACCAACAAAGCT 59.535 37.500 0.0 0.0 42.81 3.74 R
3034 3198 1.080093 CCATCACGGCTACACACGT 60.080 57.895 0.0 0.0 45.25 4.49 R
3329 3502 0.179076 TGCACTGGTATCATCGGCAG 60.179 55.000 0.0 0.0 0.00 4.85 R
4182 4388 0.599558 TCGTGTACCTCAACCTTCGG 59.400 55.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 1.308998 GATGCCCCAACGGATAACTG 58.691 55.000 0.00 0.00 0.00 3.16
46 48 2.327200 GGCAGTATAGCCGGTCTTTT 57.673 50.000 1.90 0.00 46.12 2.27
50 52 3.518590 CAGTATAGCCGGTCTTTTCGTT 58.481 45.455 1.90 0.00 0.00 3.85
60 62 3.728566 CGGTCTTTTCGTTGGACGTTTTT 60.729 43.478 0.00 0.00 43.14 1.94
100 106 1.578897 GGCCTCCCTCTTCTCTCTTT 58.421 55.000 0.00 0.00 0.00 2.52
101 107 1.484653 GGCCTCCCTCTTCTCTCTTTC 59.515 57.143 0.00 0.00 0.00 2.62
103 109 2.892301 GCCTCCCTCTTCTCTCTTTCCT 60.892 54.545 0.00 0.00 0.00 3.36
104 110 3.031013 CCTCCCTCTTCTCTCTTTCCTC 58.969 54.545 0.00 0.00 0.00 3.71
107 113 3.335183 TCCCTCTTCTCTCTTTCCTCTCA 59.665 47.826 0.00 0.00 0.00 3.27
109 115 4.081697 CCCTCTTCTCTCTTTCCTCTCAAC 60.082 50.000 0.00 0.00 0.00 3.18
114 120 1.152271 TCTCTTTCCTCTCAACCCCCT 59.848 52.381 0.00 0.00 0.00 4.79
115 121 2.385765 TCTCTTTCCTCTCAACCCCCTA 59.614 50.000 0.00 0.00 0.00 3.53
128 140 1.399057 CCCCTAACCCCACCTAGGT 59.601 63.158 9.21 9.21 40.14 3.08
144 156 1.996900 GGTCCAACCTAACCCCTCC 59.003 63.158 0.00 0.00 34.73 4.30
145 157 0.549413 GGTCCAACCTAACCCCTCCT 60.549 60.000 0.00 0.00 34.73 3.69
146 158 1.274011 GGTCCAACCTAACCCCTCCTA 60.274 57.143 0.00 0.00 34.73 2.94
147 159 2.554563 GTCCAACCTAACCCCTCCTAA 58.445 52.381 0.00 0.00 0.00 2.69
148 160 2.238144 GTCCAACCTAACCCCTCCTAAC 59.762 54.545 0.00 0.00 0.00 2.34
149 161 1.562942 CCAACCTAACCCCTCCTAACC 59.437 57.143 0.00 0.00 0.00 2.85
150 162 2.271777 CAACCTAACCCCTCCTAACCA 58.728 52.381 0.00 0.00 0.00 3.67
151 163 1.962558 ACCTAACCCCTCCTAACCAC 58.037 55.000 0.00 0.00 0.00 4.16
152 164 1.210538 CCTAACCCCTCCTAACCACC 58.789 60.000 0.00 0.00 0.00 4.61
153 165 1.274242 CCTAACCCCTCCTAACCACCT 60.274 57.143 0.00 0.00 0.00 4.00
154 166 2.117051 CTAACCCCTCCTAACCACCTC 58.883 57.143 0.00 0.00 0.00 3.85
183 197 2.821366 CACAGTGCATCGAGCCCC 60.821 66.667 0.00 0.00 44.83 5.80
184 198 3.005539 ACAGTGCATCGAGCCCCT 61.006 61.111 0.00 0.00 44.83 4.79
185 199 2.270205 CAGTGCATCGAGCCCCTT 59.730 61.111 0.00 0.00 44.83 3.95
186 200 1.817099 CAGTGCATCGAGCCCCTTC 60.817 63.158 0.00 0.00 44.83 3.46
209 224 0.531090 TGTGTGTCCGAAACTTCCCG 60.531 55.000 0.00 0.00 0.00 5.14
215 230 2.745037 CGAAACTTCCCGGACCCA 59.255 61.111 0.73 0.00 0.00 4.51
216 231 1.670083 CGAAACTTCCCGGACCCAC 60.670 63.158 0.73 0.00 0.00 4.61
217 232 1.303074 GAAACTTCCCGGACCCACC 60.303 63.158 0.73 0.00 0.00 4.61
238 255 1.003839 GGCAGTCATGACCGTTGGA 60.004 57.895 22.21 0.00 0.00 3.53
242 259 1.066215 CAGTCATGACCGTTGGATCCA 60.066 52.381 22.21 11.44 0.00 3.41
307 324 7.169982 CGTTGGACTCTCCTAAGCTAATTATTG 59.830 40.741 0.00 0.00 37.46 1.90
328 345 3.181397 GTCGACCGTCCGATTAAAATCA 58.819 45.455 3.51 0.00 40.91 2.57
350 367 1.945580 GGGACCAAATGCCCCTAAAA 58.054 50.000 0.00 0.00 38.45 1.52
433 452 2.084546 GGACTTTTTCCCATCCACTCG 58.915 52.381 0.00 0.00 38.70 4.18
441 460 2.485582 CATCCACTCGTCGTCGCT 59.514 61.111 0.00 0.00 36.96 4.93
509 536 0.677414 GCGTCCCCGGTCCAAAAATA 60.677 55.000 0.00 0.00 33.68 1.40
534 561 1.910580 GATCTCTCCCCGCCAACCAA 61.911 60.000 0.00 0.00 0.00 3.67
564 591 3.698263 ATCCCCTCGTCCACCTCCC 62.698 68.421 0.00 0.00 0.00 4.30
694 723 3.213402 CCTCGTCCCGCTCCTCTC 61.213 72.222 0.00 0.00 0.00 3.20
695 724 3.213402 CTCGTCCCGCTCCTCTCC 61.213 72.222 0.00 0.00 0.00 3.71
696 725 3.707640 CTCGTCCCGCTCCTCTCCT 62.708 68.421 0.00 0.00 0.00 3.69
697 726 3.213402 CGTCCCGCTCCTCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
698 727 2.835895 GTCCCGCTCCTCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
699 728 3.024356 TCCCGCTCCTCTCCTCCT 61.024 66.667 0.00 0.00 0.00 3.69
700 729 2.837291 CCCGCTCCTCTCCTCCTG 60.837 72.222 0.00 0.00 0.00 3.86
701 730 2.043450 CCGCTCCTCTCCTCCTGT 60.043 66.667 0.00 0.00 0.00 4.00
702 731 1.684049 CCGCTCCTCTCCTCCTGTT 60.684 63.158 0.00 0.00 0.00 3.16
703 732 1.261238 CCGCTCCTCTCCTCCTGTTT 61.261 60.000 0.00 0.00 0.00 2.83
704 733 0.610687 CGCTCCTCTCCTCCTGTTTT 59.389 55.000 0.00 0.00 0.00 2.43
705 734 1.404851 CGCTCCTCTCCTCCTGTTTTC 60.405 57.143 0.00 0.00 0.00 2.29
706 735 1.065782 GCTCCTCTCCTCCTGTTTTCC 60.066 57.143 0.00 0.00 0.00 3.13
707 736 1.557371 CTCCTCTCCTCCTGTTTTCCC 59.443 57.143 0.00 0.00 0.00 3.97
708 737 1.152271 TCCTCTCCTCCTGTTTTCCCT 59.848 52.381 0.00 0.00 0.00 4.20
709 738 1.557371 CCTCTCCTCCTGTTTTCCCTC 59.443 57.143 0.00 0.00 0.00 4.30
710 739 2.545810 CTCTCCTCCTGTTTTCCCTCT 58.454 52.381 0.00 0.00 0.00 3.69
711 740 2.499693 CTCTCCTCCTGTTTTCCCTCTC 59.500 54.545 0.00 0.00 0.00 3.20
712 741 2.112691 TCTCCTCCTGTTTTCCCTCTCT 59.887 50.000 0.00 0.00 0.00 3.10
713 742 2.499693 CTCCTCCTGTTTTCCCTCTCTC 59.500 54.545 0.00 0.00 0.00 3.20
714 743 2.112691 TCCTCCTGTTTTCCCTCTCTCT 59.887 50.000 0.00 0.00 0.00 3.10
715 744 2.499693 CCTCCTGTTTTCCCTCTCTCTC 59.500 54.545 0.00 0.00 0.00 3.20
716 745 3.440127 CTCCTGTTTTCCCTCTCTCTCT 58.560 50.000 0.00 0.00 0.00 3.10
717 746 3.436243 TCCTGTTTTCCCTCTCTCTCTC 58.564 50.000 0.00 0.00 0.00 3.20
718 747 3.076785 TCCTGTTTTCCCTCTCTCTCTCT 59.923 47.826 0.00 0.00 0.00 3.10
719 748 3.447229 CCTGTTTTCCCTCTCTCTCTCTC 59.553 52.174 0.00 0.00 0.00 3.20
720 749 4.344104 CTGTTTTCCCTCTCTCTCTCTCT 58.656 47.826 0.00 0.00 0.00 3.10
721 750 4.340617 TGTTTTCCCTCTCTCTCTCTCTC 58.659 47.826 0.00 0.00 0.00 3.20
722 751 4.202620 TGTTTTCCCTCTCTCTCTCTCTCA 60.203 45.833 0.00 0.00 0.00 3.27
723 752 4.879295 TTTCCCTCTCTCTCTCTCTCAT 57.121 45.455 0.00 0.00 0.00 2.90
724 753 3.862877 TCCCTCTCTCTCTCTCTCATG 57.137 52.381 0.00 0.00 0.00 3.07
725 754 2.442878 TCCCTCTCTCTCTCTCTCATGG 59.557 54.545 0.00 0.00 0.00 3.66
726 755 2.175499 CCCTCTCTCTCTCTCTCATGGT 59.825 54.545 0.00 0.00 0.00 3.55
727 756 3.216800 CCTCTCTCTCTCTCTCATGGTG 58.783 54.545 0.00 0.00 0.00 4.17
728 757 3.216800 CTCTCTCTCTCTCTCATGGTGG 58.783 54.545 0.00 0.00 0.00 4.61
729 758 1.682854 CTCTCTCTCTCTCATGGTGGC 59.317 57.143 0.00 0.00 0.00 5.01
730 759 0.752054 CTCTCTCTCTCATGGTGGCC 59.248 60.000 0.00 0.00 0.00 5.36
731 760 0.689080 TCTCTCTCTCATGGTGGCCC 60.689 60.000 0.00 0.00 0.00 5.80
732 761 0.690411 CTCTCTCTCATGGTGGCCCT 60.690 60.000 0.00 0.00 0.00 5.19
733 762 0.689080 TCTCTCTCATGGTGGCCCTC 60.689 60.000 0.00 0.00 0.00 4.30
734 763 0.690411 CTCTCTCATGGTGGCCCTCT 60.690 60.000 0.00 0.00 0.00 3.69
735 764 0.689080 TCTCTCATGGTGGCCCTCTC 60.689 60.000 0.00 0.00 0.00 3.20
736 765 0.690411 CTCTCATGGTGGCCCTCTCT 60.690 60.000 0.00 0.00 0.00 3.10
737 766 0.689080 TCTCATGGTGGCCCTCTCTC 60.689 60.000 0.00 0.00 0.00 3.20
738 767 0.690411 CTCATGGTGGCCCTCTCTCT 60.690 60.000 0.00 0.00 0.00 3.10
739 768 0.689080 TCATGGTGGCCCTCTCTCTC 60.689 60.000 0.00 0.00 0.00 3.20
740 769 0.690411 CATGGTGGCCCTCTCTCTCT 60.690 60.000 0.00 0.00 0.00 3.10
741 770 0.398381 ATGGTGGCCCTCTCTCTCTC 60.398 60.000 0.00 0.00 0.00 3.20
742 771 1.760480 GGTGGCCCTCTCTCTCTCC 60.760 68.421 0.00 0.00 0.00 3.71
743 772 1.309688 GTGGCCCTCTCTCTCTCCT 59.690 63.158 0.00 0.00 0.00 3.69
744 773 0.325203 GTGGCCCTCTCTCTCTCCTT 60.325 60.000 0.00 0.00 0.00 3.36
745 774 0.032615 TGGCCCTCTCTCTCTCCTTC 60.033 60.000 0.00 0.00 0.00 3.46
746 775 0.759060 GGCCCTCTCTCTCTCCTTCC 60.759 65.000 0.00 0.00 0.00 3.46
747 776 0.759060 GCCCTCTCTCTCTCCTTCCC 60.759 65.000 0.00 0.00 0.00 3.97
748 777 0.633921 CCCTCTCTCTCTCCTTCCCA 59.366 60.000 0.00 0.00 0.00 4.37
749 778 1.411501 CCCTCTCTCTCTCCTTCCCAG 60.412 61.905 0.00 0.00 0.00 4.45
750 779 1.411501 CCTCTCTCTCTCCTTCCCAGG 60.412 61.905 0.00 0.00 42.50 4.45
760 789 2.206576 CCTTCCCAGGAACAAGAAGG 57.793 55.000 6.96 6.96 46.84 3.46
762 791 3.064900 CTTCCCAGGAACAAGAAGGAG 57.935 52.381 0.00 0.00 33.61 3.69
763 792 0.693049 TCCCAGGAACAAGAAGGAGC 59.307 55.000 0.00 0.00 0.00 4.70
764 793 0.695347 CCCAGGAACAAGAAGGAGCT 59.305 55.000 0.00 0.00 0.00 4.09
765 794 1.339535 CCCAGGAACAAGAAGGAGCTC 60.340 57.143 4.71 4.71 0.00 4.09
766 795 1.674221 CCAGGAACAAGAAGGAGCTCG 60.674 57.143 7.83 0.00 0.00 5.03
767 796 0.036858 AGGAACAAGAAGGAGCTCGC 60.037 55.000 7.83 0.47 0.00 5.03
768 797 1.021920 GGAACAAGAAGGAGCTCGCC 61.022 60.000 7.83 0.00 0.00 5.54
769 798 1.003233 AACAAGAAGGAGCTCGCCC 60.003 57.895 7.83 0.00 0.00 6.13
770 799 1.768684 AACAAGAAGGAGCTCGCCCA 61.769 55.000 7.83 0.00 0.00 5.36
771 800 1.003355 CAAGAAGGAGCTCGCCCAA 60.003 57.895 7.83 0.00 0.00 4.12
772 801 1.023513 CAAGAAGGAGCTCGCCCAAG 61.024 60.000 7.83 0.00 0.00 3.61
773 802 2.811542 AAGAAGGAGCTCGCCCAAGC 62.812 60.000 7.83 0.00 42.82 4.01
779 808 3.207669 GCTCGCCCAAGCTCCATG 61.208 66.667 0.00 0.00 39.27 3.66
780 809 2.515523 CTCGCCCAAGCTCCATGG 60.516 66.667 4.97 4.97 36.60 3.66
781 810 4.802051 TCGCCCAAGCTCCATGGC 62.802 66.667 6.96 0.00 40.54 4.40
802 831 4.125695 GCCGCCGTCGTCCTACTT 62.126 66.667 0.00 0.00 0.00 2.24
803 832 2.101770 CCGCCGTCGTCCTACTTC 59.898 66.667 0.00 0.00 0.00 3.01
804 833 2.277120 CGCCGTCGTCCTACTTCG 60.277 66.667 0.00 0.00 0.00 3.79
805 834 2.873288 GCCGTCGTCCTACTTCGT 59.127 61.111 0.00 0.00 0.00 3.85
806 835 1.226239 GCCGTCGTCCTACTTCGTC 60.226 63.158 0.00 0.00 0.00 4.20
807 836 1.427020 CCGTCGTCCTACTTCGTCC 59.573 63.158 0.00 0.00 0.00 4.79
808 837 1.023513 CCGTCGTCCTACTTCGTCCT 61.024 60.000 0.00 0.00 0.00 3.85
809 838 0.096628 CGTCGTCCTACTTCGTCCTG 59.903 60.000 0.00 0.00 0.00 3.86
810 839 1.163554 GTCGTCCTACTTCGTCCTGT 58.836 55.000 0.00 0.00 0.00 4.00
811 840 1.135746 GTCGTCCTACTTCGTCCTGTG 60.136 57.143 0.00 0.00 0.00 3.66
812 841 1.162698 CGTCCTACTTCGTCCTGTGA 58.837 55.000 0.00 0.00 0.00 3.58
813 842 1.135746 CGTCCTACTTCGTCCTGTGAC 60.136 57.143 0.00 0.00 38.18 3.67
814 843 1.201880 GTCCTACTTCGTCCTGTGACC 59.798 57.143 0.00 0.00 38.32 4.02
815 844 1.075050 TCCTACTTCGTCCTGTGACCT 59.925 52.381 0.00 0.00 38.32 3.85
816 845 1.473278 CCTACTTCGTCCTGTGACCTC 59.527 57.143 0.00 0.00 38.32 3.85
817 846 1.473278 CTACTTCGTCCTGTGACCTCC 59.527 57.143 0.00 0.00 38.32 4.30
818 847 1.213013 CTTCGTCCTGTGACCTCCG 59.787 63.158 0.00 0.00 38.32 4.63
819 848 1.228337 TTCGTCCTGTGACCTCCGA 60.228 57.895 0.00 0.00 38.32 4.55
820 849 1.241990 TTCGTCCTGTGACCTCCGAG 61.242 60.000 0.00 0.00 38.32 4.63
821 850 2.574399 GTCCTGTGACCTCCGAGC 59.426 66.667 0.00 0.00 35.34 5.03
822 851 2.117423 TCCTGTGACCTCCGAGCA 59.883 61.111 0.00 0.00 0.00 4.26
823 852 1.979155 TCCTGTGACCTCCGAGCAG 60.979 63.158 0.00 0.00 0.00 4.24
824 853 2.125753 CTGTGACCTCCGAGCAGC 60.126 66.667 0.00 0.00 0.00 5.25
825 854 3.978723 CTGTGACCTCCGAGCAGCG 62.979 68.421 0.00 0.00 40.47 5.18
844 873 4.899239 CACCCGCCGGATCTGCTC 62.899 72.222 5.05 0.00 0.00 4.26
847 876 4.637489 CCGCCGGATCTGCTCGAG 62.637 72.222 5.05 8.45 0.00 4.04
849 878 3.910490 GCCGGATCTGCTCGAGCT 61.910 66.667 35.27 18.16 42.66 4.09
850 879 2.334653 CCGGATCTGCTCGAGCTC 59.665 66.667 35.27 24.77 42.66 4.09
851 880 2.192861 CCGGATCTGCTCGAGCTCT 61.193 63.158 35.27 20.77 42.66 4.09
852 881 1.282570 CGGATCTGCTCGAGCTCTC 59.717 63.158 35.27 26.32 42.66 3.20
853 882 1.659794 GGATCTGCTCGAGCTCTCC 59.340 63.158 35.27 30.10 42.66 3.71
854 883 0.823356 GGATCTGCTCGAGCTCTCCT 60.823 60.000 35.27 16.96 42.66 3.69
855 884 0.593128 GATCTGCTCGAGCTCTCCTC 59.407 60.000 35.27 20.70 42.66 3.71
862 891 3.535962 GAGCTCTCCTCGCCCCTG 61.536 72.222 6.43 0.00 0.00 4.45
873 902 2.978824 GCCCCTGCGTCTCAAGTA 59.021 61.111 0.00 0.00 0.00 2.24
874 903 1.448013 GCCCCTGCGTCTCAAGTAC 60.448 63.158 0.00 0.00 0.00 2.73
875 904 1.218316 CCCCTGCGTCTCAAGTACC 59.782 63.158 0.00 0.00 0.00 3.34
876 905 1.153823 CCCTGCGTCTCAAGTACCG 60.154 63.158 0.00 0.00 0.00 4.02
877 906 1.585006 CCTGCGTCTCAAGTACCGT 59.415 57.895 0.00 0.00 0.00 4.83
878 907 0.732880 CCTGCGTCTCAAGTACCGTG 60.733 60.000 0.00 0.00 0.00 4.94
879 908 0.039437 CTGCGTCTCAAGTACCGTGT 60.039 55.000 0.00 0.00 0.00 4.49
880 909 0.039798 TGCGTCTCAAGTACCGTGTC 60.040 55.000 0.00 0.00 0.00 3.67
881 910 1.063951 GCGTCTCAAGTACCGTGTCG 61.064 60.000 0.00 0.00 0.00 4.35
882 911 0.236711 CGTCTCAAGTACCGTGTCGT 59.763 55.000 0.00 0.00 0.00 4.34
883 912 1.724018 CGTCTCAAGTACCGTGTCGTC 60.724 57.143 0.00 0.00 0.00 4.20
884 913 1.265095 GTCTCAAGTACCGTGTCGTCA 59.735 52.381 0.00 0.00 0.00 4.35
885 914 1.948834 TCTCAAGTACCGTGTCGTCAA 59.051 47.619 0.00 0.00 0.00 3.18
886 915 2.031420 TCTCAAGTACCGTGTCGTCAAG 60.031 50.000 0.00 0.00 0.00 3.02
887 916 0.782384 CAAGTACCGTGTCGTCAAGC 59.218 55.000 0.00 0.00 0.00 4.01
888 917 0.319297 AAGTACCGTGTCGTCAAGCC 60.319 55.000 0.00 0.00 0.00 4.35
889 918 2.084681 GTACCGTGTCGTCAAGCCG 61.085 63.158 0.00 0.00 0.00 5.52
890 919 3.902162 TACCGTGTCGTCAAGCCGC 62.902 63.158 0.00 0.00 0.00 6.53
893 922 3.112709 GTGTCGTCAAGCCGCCTC 61.113 66.667 0.00 0.00 0.00 4.70
894 923 4.373116 TGTCGTCAAGCCGCCTCC 62.373 66.667 0.00 0.00 0.00 4.30
895 924 4.070552 GTCGTCAAGCCGCCTCCT 62.071 66.667 0.00 0.00 0.00 3.69
896 925 3.311110 TCGTCAAGCCGCCTCCTT 61.311 61.111 0.00 0.00 0.00 3.36
897 926 3.121030 CGTCAAGCCGCCTCCTTG 61.121 66.667 0.00 0.00 40.72 3.61
898 927 3.435186 GTCAAGCCGCCTCCTTGC 61.435 66.667 0.00 0.00 39.54 4.01
899 928 4.722700 TCAAGCCGCCTCCTTGCC 62.723 66.667 0.00 0.00 39.54 4.52
905 934 4.521062 CGCCTCCTTGCCCTCGAG 62.521 72.222 5.13 5.13 0.00 4.04
906 935 3.394836 GCCTCCTTGCCCTCGAGT 61.395 66.667 12.31 0.00 0.00 4.18
907 936 2.896443 CCTCCTTGCCCTCGAGTC 59.104 66.667 12.31 3.27 0.00 3.36
908 937 1.684049 CCTCCTTGCCCTCGAGTCT 60.684 63.158 12.31 0.00 0.00 3.24
909 938 1.515020 CTCCTTGCCCTCGAGTCTG 59.485 63.158 12.31 0.38 0.00 3.51
910 939 1.228894 TCCTTGCCCTCGAGTCTGT 60.229 57.895 12.31 0.00 0.00 3.41
911 940 1.216710 CCTTGCCCTCGAGTCTGTC 59.783 63.158 12.31 0.00 0.00 3.51
912 941 1.216710 CTTGCCCTCGAGTCTGTCC 59.783 63.158 12.31 0.00 0.00 4.02
913 942 1.533033 TTGCCCTCGAGTCTGTCCA 60.533 57.895 12.31 0.00 0.00 4.02
914 943 1.536073 TTGCCCTCGAGTCTGTCCAG 61.536 60.000 12.31 0.00 0.00 3.86
915 944 1.979693 GCCCTCGAGTCTGTCCAGT 60.980 63.158 12.31 0.00 0.00 4.00
916 945 1.536943 GCCCTCGAGTCTGTCCAGTT 61.537 60.000 12.31 0.00 0.00 3.16
917 946 0.528470 CCCTCGAGTCTGTCCAGTTC 59.472 60.000 12.31 0.00 0.00 3.01
918 947 0.528470 CCTCGAGTCTGTCCAGTTCC 59.472 60.000 12.31 0.00 0.00 3.62
919 948 0.169230 CTCGAGTCTGTCCAGTTCCG 59.831 60.000 3.62 0.00 0.00 4.30
920 949 1.444553 CGAGTCTGTCCAGTTCCGC 60.445 63.158 0.00 0.00 0.00 5.54
921 950 1.867919 CGAGTCTGTCCAGTTCCGCT 61.868 60.000 0.00 0.00 0.00 5.52
922 951 0.389166 GAGTCTGTCCAGTTCCGCTG 60.389 60.000 0.00 0.00 44.63 5.18
923 952 1.115930 AGTCTGTCCAGTTCCGCTGT 61.116 55.000 0.00 0.00 43.55 4.40
924 953 0.667792 GTCTGTCCAGTTCCGCTGTC 60.668 60.000 0.00 0.00 43.55 3.51
925 954 1.374758 CTGTCCAGTTCCGCTGTCC 60.375 63.158 0.00 0.00 43.55 4.02
926 955 2.432628 GTCCAGTTCCGCTGTCCG 60.433 66.667 0.00 0.00 43.55 4.79
927 956 4.373116 TCCAGTTCCGCTGTCCGC 62.373 66.667 0.00 0.00 43.55 5.54
958 987 4.517703 CTCGTCGGCGTCGTCCTC 62.518 72.222 24.03 0.00 39.49 3.71
967 996 4.773117 GTCGTCCTCGTGCCGTCC 62.773 72.222 0.00 0.00 38.33 4.79
970 999 4.436998 GTCCTCGTGCCGTCCCAG 62.437 72.222 0.00 0.00 0.00 4.45
985 1014 4.814294 CAGCCCCGTCGCCACTAC 62.814 72.222 0.00 0.00 0.00 2.73
987 1016 4.814294 GCCCCGTCGCCACTACTG 62.814 72.222 0.00 0.00 0.00 2.74
988 1017 4.814294 CCCCGTCGCCACTACTGC 62.814 72.222 0.00 0.00 0.00 4.40
989 1018 4.063967 CCCGTCGCCACTACTGCA 62.064 66.667 0.00 0.00 0.00 4.41
990 1019 2.048597 CCGTCGCCACTACTGCAA 60.049 61.111 0.00 0.00 0.00 4.08
991 1020 2.094659 CCGTCGCCACTACTGCAAG 61.095 63.158 0.00 0.00 42.29 4.01
992 1021 1.080772 CGTCGCCACTACTGCAAGA 60.081 57.895 0.00 0.00 37.43 3.02
993 1022 1.344942 CGTCGCCACTACTGCAAGAC 61.345 60.000 0.00 0.00 37.43 3.01
994 1023 1.014564 GTCGCCACTACTGCAAGACC 61.015 60.000 0.00 0.00 37.43 3.85
995 1024 1.741770 CGCCACTACTGCAAGACCC 60.742 63.158 0.00 0.00 37.43 4.46
996 1025 1.377333 GCCACTACTGCAAGACCCC 60.377 63.158 0.00 0.00 37.43 4.95
997 1026 1.079127 CCACTACTGCAAGACCCCG 60.079 63.158 0.00 0.00 37.43 5.73
998 1027 1.741770 CACTACTGCAAGACCCCGC 60.742 63.158 0.00 0.00 37.43 6.13
999 1028 2.125106 CTACTGCAAGACCCCGCC 60.125 66.667 0.00 0.00 37.43 6.13
1000 1029 2.925706 TACTGCAAGACCCCGCCA 60.926 61.111 0.00 0.00 37.43 5.69
1001 1030 2.257409 CTACTGCAAGACCCCGCCAT 62.257 60.000 0.00 0.00 37.43 4.40
1002 1031 2.535485 TACTGCAAGACCCCGCCATG 62.535 60.000 0.00 0.00 37.43 3.66
1003 1032 4.738998 TGCAAGACCCCGCCATGG 62.739 66.667 7.63 7.63 37.55 3.66
1004 1033 4.424711 GCAAGACCCCGCCATGGA 62.425 66.667 18.40 0.00 42.00 3.41
1005 1034 2.438434 CAAGACCCCGCCATGGAC 60.438 66.667 18.40 5.97 42.00 4.02
1006 1035 2.933287 AAGACCCCGCCATGGACA 60.933 61.111 18.40 0.00 42.00 4.02
1007 1036 3.268103 AAGACCCCGCCATGGACAC 62.268 63.158 18.40 0.00 42.00 3.67
1008 1037 4.796495 GACCCCGCCATGGACACC 62.796 72.222 18.40 0.00 42.00 4.16
1026 1055 4.368543 GTCCACCGACGACCACCC 62.369 72.222 0.00 0.00 0.00 4.61
1027 1056 4.918278 TCCACCGACGACCACCCA 62.918 66.667 0.00 0.00 0.00 4.51
1028 1057 4.373116 CCACCGACGACCACCCAG 62.373 72.222 0.00 0.00 0.00 4.45
1029 1058 4.373116 CACCGACGACCACCCAGG 62.373 72.222 0.00 0.00 45.67 4.45
1038 1067 3.685435 CCACCCAGGTCATGTTGC 58.315 61.111 0.00 0.00 0.00 4.17
1039 1068 1.978617 CCACCCAGGTCATGTTGCC 60.979 63.158 0.00 0.00 0.00 4.52
1040 1069 2.034066 ACCCAGGTCATGTTGCCG 59.966 61.111 0.00 0.00 0.00 5.69
1041 1070 2.034066 CCCAGGTCATGTTGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
1042 1071 2.334946 CCCAGGTCATGTTGCCGTG 61.335 63.158 0.00 0.00 0.00 4.94
1043 1072 1.302431 CCAGGTCATGTTGCCGTGA 60.302 57.895 0.00 0.00 34.20 4.35
1062 1091 2.588314 CTGCCTCCTCTGCATCGC 60.588 66.667 0.00 0.00 38.22 4.58
1063 1092 3.381333 CTGCCTCCTCTGCATCGCA 62.381 63.158 0.00 0.00 38.22 5.10
1065 1094 2.898738 CCTCCTCTGCATCGCACT 59.101 61.111 0.00 0.00 33.79 4.40
1068 1097 3.200593 CCTCTGCATCGCACTGGC 61.201 66.667 0.00 0.00 33.79 4.85
1116 1145 2.632544 ATGCGAGGACGACGACCAA 61.633 57.895 18.31 1.80 42.66 3.67
1122 1151 2.659244 GACGACGACCAACGCCAA 60.659 61.111 0.00 0.00 46.94 4.52
1127 1156 2.030562 CGACCAACGCCAAGTCCT 59.969 61.111 0.00 0.00 34.51 3.85
1134 1172 0.603975 AACGCCAAGTCCTGCTTCTC 60.604 55.000 0.00 0.00 34.69 2.87
1146 1184 2.657237 CTTCTCCCGTTGACCGCT 59.343 61.111 0.00 0.00 34.38 5.52
1148 1186 2.436087 CTTCTCCCGTTGACCGCTGT 62.436 60.000 0.00 0.00 34.38 4.40
1149 1187 2.709125 TTCTCCCGTTGACCGCTGTG 62.709 60.000 0.00 0.00 34.38 3.66
1150 1188 4.980805 TCCCGTTGACCGCTGTGC 62.981 66.667 0.00 0.00 34.38 4.57
1151 1189 4.988598 CCCGTTGACCGCTGTGCT 62.989 66.667 0.00 0.00 34.38 4.40
1152 1190 2.048597 CCGTTGACCGCTGTGCTA 60.049 61.111 0.00 0.00 34.38 3.49
1154 1192 2.094659 CGTTGACCGCTGTGCTAGG 61.095 63.158 0.00 0.00 0.00 3.02
1155 1193 1.004918 GTTGACCGCTGTGCTAGGT 60.005 57.895 0.00 0.00 41.63 3.08
1158 1196 4.757773 ACCGCTGTGCTAGGTCTA 57.242 55.556 0.00 0.00 31.69 2.59
1159 1197 2.494677 ACCGCTGTGCTAGGTCTAG 58.505 57.895 0.85 0.85 31.69 2.43
1167 1221 3.935024 CTAGGTCTAGCCGTGCCA 58.065 61.111 0.00 0.00 43.70 4.92
1168 1222 2.199117 CTAGGTCTAGCCGTGCCAA 58.801 57.895 0.00 0.00 43.70 4.52
1169 1223 0.103208 CTAGGTCTAGCCGTGCCAAG 59.897 60.000 0.00 0.00 43.70 3.61
1172 1226 4.096003 TCTAGCCGTGCCAAGCCC 62.096 66.667 0.00 0.00 0.00 5.19
1174 1228 4.408821 TAGCCGTGCCAAGCCCAG 62.409 66.667 0.00 0.00 0.00 4.45
1197 1252 2.687610 CCTGCCTTGGCCTCTCCAT 61.688 63.158 3.32 0.00 46.04 3.41
1203 1258 2.317149 CTTGGCCTCTCCATCGACCC 62.317 65.000 3.32 0.00 46.04 4.46
1205 1260 3.917760 GCCTCTCCATCGACCCGG 61.918 72.222 0.00 0.00 0.00 5.73
1206 1261 3.227276 CCTCTCCATCGACCCGGG 61.227 72.222 22.25 22.25 0.00 5.73
1208 1263 4.458829 TCTCCATCGACCCGGGCT 62.459 66.667 24.08 8.07 0.00 5.19
1211 1266 4.856801 CCATCGACCCGGGCTTGG 62.857 72.222 24.08 18.43 0.00 3.61
1229 1284 3.957586 CCTGTGGTGAGCAGCCCA 61.958 66.667 0.00 0.00 32.93 5.36
1244 1299 2.203538 CCAGCCACCCAGTGCTTT 60.204 61.111 0.00 0.00 31.34 3.51
1245 1300 2.567497 CCAGCCACCCAGTGCTTTG 61.567 63.158 0.00 0.00 31.34 2.77
1247 1302 1.076044 AGCCACCCAGTGCTTTGTT 60.076 52.632 0.00 0.00 31.34 2.83
1248 1303 0.687427 AGCCACCCAGTGCTTTGTTT 60.687 50.000 0.00 0.00 31.34 2.83
1249 1304 1.036707 GCCACCCAGTGCTTTGTTTA 58.963 50.000 0.00 0.00 31.34 2.01
1250 1305 1.000274 GCCACCCAGTGCTTTGTTTAG 60.000 52.381 0.00 0.00 31.34 1.85
1260 1315 2.239400 GCTTTGTTTAGGCCCAGTTCT 58.761 47.619 0.00 0.00 0.00 3.01
1262 1317 3.440522 GCTTTGTTTAGGCCCAGTTCTAG 59.559 47.826 0.00 0.00 0.00 2.43
1266 1321 2.236395 GTTTAGGCCCAGTTCTAGCAGA 59.764 50.000 0.00 0.00 0.00 4.26
1279 1334 1.895798 CTAGCAGATTCGGCCCATAGA 59.104 52.381 5.11 0.00 0.00 1.98
1280 1335 0.394565 AGCAGATTCGGCCCATAGAC 59.605 55.000 5.11 0.00 0.00 2.59
1312 1368 6.642707 TCCGTTCTGTGAATTTACCATTTT 57.357 33.333 0.00 0.00 0.00 1.82
1455 1515 8.638629 TCATAATATGCATGTTTCATCCATGA 57.361 30.769 14.25 12.32 41.78 3.07
1597 1660 7.306983 GCAGAAAAATGCATAGATTAACATGGC 60.307 37.037 0.00 0.00 45.77 4.40
1643 1706 8.879427 ACAACTCTAAAATTATGTTTAGGGCT 57.121 30.769 4.80 0.00 42.87 5.19
1649 1712 9.474313 TCTAAAATTATGTTTAGGGCTGAACAT 57.526 29.630 14.51 14.51 46.78 2.71
1654 1717 4.301072 TGTTTAGGGCTGAACATTAGCT 57.699 40.909 0.00 0.00 40.92 3.32
1660 1723 4.130118 AGGGCTGAACATTAGCTAATTCG 58.870 43.478 16.46 9.04 40.92 3.34
1696 1761 4.881920 AGGATTTTCCGGAATTGTTGTTG 58.118 39.130 19.62 0.00 42.75 3.33
1697 1762 4.343814 AGGATTTTCCGGAATTGTTGTTGT 59.656 37.500 19.62 0.00 42.75 3.32
1699 1764 5.050431 GGATTTTCCGGAATTGTTGTTGTTG 60.050 40.000 19.62 0.00 0.00 3.33
1705 1771 4.177026 CGGAATTGTTGTTGTTGTTTCCA 58.823 39.130 0.00 0.00 32.53 3.53
1770 1837 4.646945 TCACCTCTTGCCATGTTTAACAAA 59.353 37.500 0.66 0.00 0.00 2.83
1835 1904 5.351233 TTGATGTGGTGTTTCGTCAATAC 57.649 39.130 0.00 0.00 35.53 1.89
1859 1928 3.533606 ACTCGTTGCATATTGAGCTCT 57.466 42.857 16.19 0.00 31.64 4.09
1901 1971 1.294138 GCACTTTGCCATGCCATGT 59.706 52.632 3.63 0.00 37.42 3.21
1902 1972 0.320946 GCACTTTGCCATGCCATGTT 60.321 50.000 3.63 0.00 37.42 2.71
1967 2041 5.120519 GCCATGTTTATGTGATGGTTGTTTG 59.879 40.000 0.00 0.00 39.17 2.93
1979 2068 4.399004 TGGTTGTTTGCTATGTTGCTTT 57.601 36.364 0.00 0.00 0.00 3.51
1988 2077 6.639632 TTGCTATGTTGCTTTCTTCTTTCT 57.360 33.333 0.00 0.00 0.00 2.52
2013 2104 0.917939 GCTTCTCTCGTTAGCTTCGC 59.082 55.000 0.00 0.00 32.26 4.70
2042 2133 2.413837 CGGAGTTGTGAGGATTCGTTT 58.586 47.619 0.00 0.00 0.00 3.60
2052 2143 3.985279 TGAGGATTCGTTTGACTACGTTG 59.015 43.478 0.00 0.00 42.01 4.10
2056 2148 4.376717 GGATTCGTTTGACTACGTTGGTTC 60.377 45.833 0.00 0.00 42.01 3.62
2064 2172 4.005650 TGACTACGTTGGTTCGTCTATCT 58.994 43.478 0.00 0.00 43.12 1.98
2070 2178 3.259902 GTTGGTTCGTCTATCTTGGACC 58.740 50.000 0.00 0.00 0.00 4.46
2081 2189 3.790089 ATCTTGGACCCGTTCTTCTTT 57.210 42.857 0.00 0.00 0.00 2.52
2118 2226 2.037772 GCAAGATGACCATACCCTCGAT 59.962 50.000 0.00 0.00 0.00 3.59
2120 2229 4.619394 GCAAGATGACCATACCCTCGATAG 60.619 50.000 0.00 0.00 0.00 2.08
2126 2235 3.825014 GACCATACCCTCGATAGCACTTA 59.175 47.826 0.00 0.00 0.00 2.24
2156 2267 5.830000 TCTTGCTAGTTGTTCGCTCTATA 57.170 39.130 0.00 0.00 0.00 1.31
2157 2268 6.392625 TCTTGCTAGTTGTTCGCTCTATAT 57.607 37.500 0.00 0.00 0.00 0.86
2196 2308 2.437281 CCACATGTCTATCAAGCCTCCT 59.563 50.000 0.00 0.00 0.00 3.69
2199 2311 5.221803 CCACATGTCTATCAAGCCTCCTAAT 60.222 44.000 0.00 0.00 0.00 1.73
2200 2312 6.014242 CCACATGTCTATCAAGCCTCCTAATA 60.014 42.308 0.00 0.00 0.00 0.98
2201 2313 7.095910 CACATGTCTATCAAGCCTCCTAATAG 58.904 42.308 0.00 0.00 0.00 1.73
2221 2344 6.835819 ATAGCCTCTAAACTTTTTCAACCC 57.164 37.500 0.00 0.00 0.00 4.11
2234 2357 1.440618 TCAACCCTCCTAGCAAACCA 58.559 50.000 0.00 0.00 0.00 3.67
2259 2383 4.098196 TGTTTGGCTAAGTTACCGCTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
2344 2481 4.736126 TGGATATGTTCGGATATCGCAT 57.264 40.909 0.00 2.00 36.53 4.73
2353 2492 6.093404 TGTTCGGATATCGCATTATCTCTTC 58.907 40.000 0.00 0.00 39.05 2.87
2397 2538 1.742308 TGTAAAGGGTGGAAGGCTCT 58.258 50.000 0.00 0.00 0.00 4.09
2481 2624 7.595819 TGTTCCTTGATTTTGTGTTCCTAAT 57.404 32.000 0.00 0.00 0.00 1.73
2491 2634 2.905085 TGTGTTCCTAATACGGTTGGGA 59.095 45.455 4.20 4.20 0.00 4.37
2499 2645 4.042435 CCTAATACGGTTGGGATTATGGGT 59.958 45.833 0.00 0.00 0.00 4.51
2547 2693 2.118076 CCTCCAGCAAGGCCCAAA 59.882 61.111 0.00 0.00 37.29 3.28
2565 2712 5.076911 CCAAACTTGGTTTTACATTTGCG 57.923 39.130 0.00 0.00 43.43 4.85
2581 2733 3.681593 TTGCGTAACAACCTAAGCCTA 57.318 42.857 0.00 0.00 31.73 3.93
2586 2738 4.874396 GCGTAACAACCTAAGCCTATTTCT 59.126 41.667 0.00 0.00 0.00 2.52
2597 2749 5.984695 AAGCCTATTTCTCTTGGGTTTTC 57.015 39.130 0.00 0.00 37.01 2.29
2598 2750 4.010349 AGCCTATTTCTCTTGGGTTTTCG 58.990 43.478 0.00 0.00 0.00 3.46
2709 2866 3.639561 GGAAACTTGAGGGCTGGTTTTAA 59.360 43.478 0.00 0.00 32.95 1.52
2752 2910 3.318275 GTGTGCCCTGAGAACGAGATATA 59.682 47.826 0.00 0.00 0.00 0.86
2761 2919 4.764308 TGAGAACGAGATATATGCAGCTCT 59.236 41.667 0.00 0.00 0.00 4.09
2772 2931 2.533266 TGCAGCTCTTATCGGGATTC 57.467 50.000 0.00 0.00 0.00 2.52
2776 2935 2.034685 CAGCTCTTATCGGGATTCGTCA 59.965 50.000 0.00 0.00 40.32 4.35
2782 2941 0.465705 ATCGGGATTCGTCAGCACAT 59.534 50.000 0.00 0.00 40.32 3.21
2789 2948 2.723586 TTCGTCAGCACATTCGGGCA 62.724 55.000 0.00 0.00 0.00 5.36
2796 2955 1.959085 CACATTCGGGCAGCTTTGT 59.041 52.632 0.00 0.00 0.00 2.83
2841 3002 4.569719 AATGTCTTGTAACCGGGATTCT 57.430 40.909 6.32 0.00 0.00 2.40
2856 3017 3.223435 GGATTCTGAGACTGATCGGGTA 58.777 50.000 6.47 0.00 0.00 3.69
2953 3115 1.102978 AACTTGCAAAAGTCGTGCCT 58.897 45.000 0.00 0.00 41.49 4.75
2955 3117 0.381801 CTTGCAAAAGTCGTGCCTGT 59.618 50.000 0.00 0.00 41.49 4.00
2956 3118 1.601903 CTTGCAAAAGTCGTGCCTGTA 59.398 47.619 0.00 0.00 41.49 2.74
2963 3125 4.530710 AAAGTCGTGCCTGTAGTTATGA 57.469 40.909 0.00 0.00 0.00 2.15
2972 3134 4.679373 CCTGTAGTTATGAGGCAGATGT 57.321 45.455 0.00 0.00 0.00 3.06
2987 3150 6.392354 AGGCAGATGTGAATTTGTTAATGTG 58.608 36.000 0.00 0.00 0.00 3.21
3063 3227 1.218047 CGTGATGGCCTCTTTCCGA 59.782 57.895 3.32 0.00 0.00 4.55
3085 3249 0.391597 GAGTCCGGGAAGTGAACACA 59.608 55.000 0.00 0.00 0.00 3.72
3088 3252 0.391597 TCCGGGAAGTGAACACAGTC 59.608 55.000 0.00 4.33 0.00 3.51
3148 3315 6.817641 CACTTCTTGATCACTTCTAGCTTCAT 59.182 38.462 0.00 0.00 0.00 2.57
3151 3318 7.122138 TCTTGATCACTTCTAGCTTCATGAT 57.878 36.000 0.00 0.00 0.00 2.45
3160 3327 2.293677 AGCTTCATGATCGTTGCGTA 57.706 45.000 0.00 0.00 0.00 4.42
3210 3377 7.094805 CGTATGTTAGCCACCATATTTGCTTAT 60.095 37.037 0.00 0.00 35.34 1.73
3211 3378 6.633500 TGTTAGCCACCATATTTGCTTATC 57.367 37.500 0.00 0.00 35.34 1.75
3212 3379 6.125719 TGTTAGCCACCATATTTGCTTATCA 58.874 36.000 0.00 0.00 35.34 2.15
3323 3496 4.525487 ACTCACGGATACTACCAAAACAGA 59.475 41.667 0.00 0.00 0.00 3.41
3329 3502 4.035675 GGATACTACCAAAACAGATGCAGC 59.964 45.833 0.00 0.00 0.00 5.25
3350 3523 1.502163 GCCGATGATACCAGTGCAGC 61.502 60.000 0.00 0.00 0.00 5.25
3395 3568 4.511527 GAGCTCAATGAAGATCTTGGTCA 58.488 43.478 14.00 5.26 0.00 4.02
3405 3581 7.381766 TGAAGATCTTGGTCATTGTTATGTG 57.618 36.000 14.00 0.00 33.34 3.21
3414 3590 5.049060 TGGTCATTGTTATGTGTCTTTTCCG 60.049 40.000 0.00 0.00 33.34 4.30
3532 3718 7.985184 TGTACTCTGGATGATGTATGTTTAACC 59.015 37.037 0.00 0.00 0.00 2.85
3544 3730 8.980143 ATGTATGTTTAACCTGTTATTTGTGC 57.020 30.769 0.00 0.00 0.00 4.57
3672 3863 2.436646 GTGCCTCGACATGTGGGG 60.437 66.667 1.15 0.36 0.00 4.96
3939 4142 1.411246 CGGGTATCTTGGGATCGTTCA 59.589 52.381 0.00 0.00 33.71 3.18
3953 4157 5.817816 GGGATCGTTCAATATTCTTGTGACT 59.182 40.000 0.00 0.00 0.00 3.41
3967 4171 7.715265 TTCTTGTGACTAGAACATTGTTCTC 57.285 36.000 30.13 19.01 0.00 2.87
3978 4182 0.250513 ATTGTTCTCGGTGCCTCCTC 59.749 55.000 0.00 0.00 0.00 3.71
4007 4212 3.164977 TTGTGGCAGTGTCCCGGA 61.165 61.111 0.73 0.00 0.00 5.14
4017 4222 2.283529 TGTCCCGGAGAGTTGAGCC 61.284 63.158 0.73 0.00 0.00 4.70
4117 4323 4.041075 TGCAGTTGTTGGTGAGATAACCTA 59.959 41.667 0.00 0.00 41.16 3.08
4147 4353 0.192566 AGTACTGGGGTGGGAGTTCA 59.807 55.000 0.00 0.00 0.00 3.18
4182 4388 6.128902 CCATAACTCGTATAACGGATGCTTTC 60.129 42.308 0.00 0.00 42.81 2.62
4262 4469 3.010584 ACAGCTGGATGTAGGGATTGTTT 59.989 43.478 19.93 0.00 0.00 2.83
4271 4479 4.290942 TGTAGGGATTGTTTGTTTGGGTT 58.709 39.130 0.00 0.00 0.00 4.11
4317 4525 2.166254 CCAACACCAGATTGCATAACCC 59.834 50.000 0.00 0.00 0.00 4.11
4368 4576 8.734386 GGAATTCAAGTATCACATTGGATATCC 58.266 37.037 15.39 15.39 32.72 2.59
4382 4590 3.118775 TGGATATCCTTCCAACAGACACG 60.119 47.826 22.35 0.00 42.82 4.49
4424 4633 6.560253 ATCATATGTTTGTTCCGGCTTATC 57.440 37.500 0.00 0.00 0.00 1.75
4435 4644 4.540153 GCTTATCCTGCAAGCCGA 57.460 55.556 0.00 0.00 42.08 5.54
4436 4645 2.780595 GCTTATCCTGCAAGCCGAA 58.219 52.632 0.00 0.00 42.08 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 2.748532 AGACCAAAAACGTCCAACGAAA 59.251 40.909 6.48 0.00 46.05 3.46
45 47 2.352342 GAGACCAAAAACGTCCAACGAA 59.648 45.455 6.48 0.00 46.05 3.85
46 48 1.935199 GAGACCAAAAACGTCCAACGA 59.065 47.619 6.48 0.00 46.05 3.85
50 52 0.533308 CCGGAGACCAAAAACGTCCA 60.533 55.000 0.00 0.00 0.00 4.02
84 87 3.954258 GAGAGGAAAGAGAGAAGAGGGAG 59.046 52.174 0.00 0.00 0.00 4.30
85 88 3.335183 TGAGAGGAAAGAGAGAAGAGGGA 59.665 47.826 0.00 0.00 0.00 4.20
91 97 2.907042 GGGGTTGAGAGGAAAGAGAGAA 59.093 50.000 0.00 0.00 0.00 2.87
100 106 0.253020 GGGTTAGGGGGTTGAGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
101 107 1.279749 GGGGTTAGGGGGTTGAGAGG 61.280 65.000 0.00 0.00 0.00 3.69
103 109 0.843343 GTGGGGTTAGGGGGTTGAGA 60.843 60.000 0.00 0.00 0.00 3.27
104 110 1.689412 GTGGGGTTAGGGGGTTGAG 59.311 63.158 0.00 0.00 0.00 3.02
107 113 0.253488 CTAGGTGGGGTTAGGGGGTT 60.253 60.000 0.00 0.00 0.00 4.11
109 115 1.385489 CCTAGGTGGGGTTAGGGGG 60.385 68.421 0.00 0.00 34.13 5.40
114 120 1.660242 GTTGGACCTAGGTGGGGTTA 58.340 55.000 22.10 0.00 41.11 2.85
115 121 1.138228 GGTTGGACCTAGGTGGGGTT 61.138 60.000 22.10 0.00 41.11 4.11
128 140 2.554563 GTTAGGAGGGGTTAGGTTGGA 58.445 52.381 0.00 0.00 0.00 3.53
136 148 0.195096 TGAGGTGGTTAGGAGGGGTT 59.805 55.000 0.00 0.00 0.00 4.11
137 149 0.546988 GTGAGGTGGTTAGGAGGGGT 60.547 60.000 0.00 0.00 0.00 4.95
138 150 1.272554 GGTGAGGTGGTTAGGAGGGG 61.273 65.000 0.00 0.00 0.00 4.79
139 151 1.272554 GGGTGAGGTGGTTAGGAGGG 61.273 65.000 0.00 0.00 0.00 4.30
140 152 1.272554 GGGGTGAGGTGGTTAGGAGG 61.273 65.000 0.00 0.00 0.00 4.30
141 153 0.252742 AGGGGTGAGGTGGTTAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
142 154 0.252558 GAGGGGTGAGGTGGTTAGGA 60.253 60.000 0.00 0.00 0.00 2.94
143 155 1.272554 GGAGGGGTGAGGTGGTTAGG 61.273 65.000 0.00 0.00 0.00 2.69
144 156 0.252742 AGGAGGGGTGAGGTGGTTAG 60.253 60.000 0.00 0.00 0.00 2.34
145 157 0.195096 AAGGAGGGGTGAGGTGGTTA 59.805 55.000 0.00 0.00 0.00 2.85
146 158 1.072930 AAGGAGGGGTGAGGTGGTT 60.073 57.895 0.00 0.00 0.00 3.67
147 159 1.847968 CAAGGAGGGGTGAGGTGGT 60.848 63.158 0.00 0.00 0.00 4.16
148 160 3.081554 CAAGGAGGGGTGAGGTGG 58.918 66.667 0.00 0.00 0.00 4.61
149 161 2.352805 GCAAGGAGGGGTGAGGTG 59.647 66.667 0.00 0.00 0.00 4.00
150 162 2.121963 TGCAAGGAGGGGTGAGGT 60.122 61.111 0.00 0.00 0.00 3.85
151 163 2.352805 GTGCAAGGAGGGGTGAGG 59.647 66.667 0.00 0.00 0.00 3.86
152 164 1.002868 CTGTGCAAGGAGGGGTGAG 60.003 63.158 0.00 0.00 0.00 3.51
153 165 1.770110 ACTGTGCAAGGAGGGGTGA 60.770 57.895 0.00 0.00 0.00 4.02
154 166 1.601759 CACTGTGCAAGGAGGGGTG 60.602 63.158 0.00 0.00 0.00 4.61
183 197 1.484227 TTTCGGACACACACGCGAAG 61.484 55.000 15.93 7.57 0.00 3.79
184 198 1.518792 TTTCGGACACACACGCGAA 60.519 52.632 15.93 0.00 0.00 4.70
185 199 2.104530 TTTCGGACACACACGCGA 59.895 55.556 15.93 0.00 0.00 5.87
186 200 1.758319 AAGTTTCGGACACACACGCG 61.758 55.000 3.53 3.53 0.00 6.01
192 206 4.762825 CGGGAAGTTTCGGACACA 57.237 55.556 0.00 0.00 0.00 3.72
215 230 3.717294 GGTCATGACTGCCCGGGT 61.717 66.667 24.63 0.58 0.00 5.28
216 231 4.838152 CGGTCATGACTGCCCGGG 62.838 72.222 24.50 19.09 40.17 5.73
219 234 2.040544 CCAACGGTCATGACTGCCC 61.041 63.158 30.48 11.93 41.31 5.36
220 235 0.392998 ATCCAACGGTCATGACTGCC 60.393 55.000 30.48 12.29 41.31 4.85
229 246 2.548920 GGATGATCTGGATCCAACGGTC 60.549 54.545 17.00 11.48 39.49 4.79
238 255 3.181425 GGATGTTTGGGGATGATCTGGAT 60.181 47.826 0.00 0.00 0.00 3.41
242 259 2.507071 AGGGATGTTTGGGGATGATCT 58.493 47.619 0.00 0.00 0.00 2.75
307 324 3.181397 TGATTTTAATCGGACGGTCGAC 58.819 45.455 7.13 7.13 42.21 4.20
420 439 1.888018 GACGACGAGTGGATGGGAA 59.112 57.895 0.00 0.00 0.00 3.97
499 526 5.980715 GGAGAGATCGAGAGTATTTTTGGAC 59.019 44.000 0.00 0.00 0.00 4.02
509 536 1.527380 GCGGGGAGAGATCGAGAGT 60.527 63.158 0.00 0.00 0.00 3.24
608 635 3.394836 GGAGGAGCTTCGGTGGCT 61.395 66.667 0.00 0.00 43.26 4.75
690 719 2.499693 GAGAGGGAAAACAGGAGGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
691 720 2.112691 AGAGAGGGAAAACAGGAGGAGA 59.887 50.000 0.00 0.00 0.00 3.71
692 721 2.499693 GAGAGAGGGAAAACAGGAGGAG 59.500 54.545 0.00 0.00 0.00 3.69
693 722 2.112691 AGAGAGAGGGAAAACAGGAGGA 59.887 50.000 0.00 0.00 0.00 3.71
694 723 2.499693 GAGAGAGAGGGAAAACAGGAGG 59.500 54.545 0.00 0.00 0.00 4.30
695 724 3.440127 AGAGAGAGAGGGAAAACAGGAG 58.560 50.000 0.00 0.00 0.00 3.69
696 725 3.076785 AGAGAGAGAGAGGGAAAACAGGA 59.923 47.826 0.00 0.00 0.00 3.86
697 726 3.440127 AGAGAGAGAGAGGGAAAACAGG 58.560 50.000 0.00 0.00 0.00 4.00
698 727 4.344104 AGAGAGAGAGAGAGGGAAAACAG 58.656 47.826 0.00 0.00 0.00 3.16
699 728 4.202620 TGAGAGAGAGAGAGAGGGAAAACA 60.203 45.833 0.00 0.00 0.00 2.83
700 729 4.340617 TGAGAGAGAGAGAGAGGGAAAAC 58.659 47.826 0.00 0.00 0.00 2.43
701 730 4.666412 TGAGAGAGAGAGAGAGGGAAAA 57.334 45.455 0.00 0.00 0.00 2.29
702 731 4.535781 CATGAGAGAGAGAGAGAGGGAAA 58.464 47.826 0.00 0.00 0.00 3.13
703 732 3.117550 CCATGAGAGAGAGAGAGAGGGAA 60.118 52.174 0.00 0.00 0.00 3.97
704 733 2.442878 CCATGAGAGAGAGAGAGAGGGA 59.557 54.545 0.00 0.00 0.00 4.20
705 734 2.175499 ACCATGAGAGAGAGAGAGAGGG 59.825 54.545 0.00 0.00 0.00 4.30
706 735 3.216800 CACCATGAGAGAGAGAGAGAGG 58.783 54.545 0.00 0.00 0.00 3.69
707 736 3.216800 CCACCATGAGAGAGAGAGAGAG 58.783 54.545 0.00 0.00 0.00 3.20
708 737 2.686416 GCCACCATGAGAGAGAGAGAGA 60.686 54.545 0.00 0.00 0.00 3.10
709 738 1.682854 GCCACCATGAGAGAGAGAGAG 59.317 57.143 0.00 0.00 0.00 3.20
710 739 1.687682 GGCCACCATGAGAGAGAGAGA 60.688 57.143 0.00 0.00 0.00 3.10
711 740 0.752054 GGCCACCATGAGAGAGAGAG 59.248 60.000 0.00 0.00 0.00 3.20
712 741 0.689080 GGGCCACCATGAGAGAGAGA 60.689 60.000 4.39 0.00 36.50 3.10
713 742 0.690411 AGGGCCACCATGAGAGAGAG 60.690 60.000 6.18 0.00 40.13 3.20
714 743 0.689080 GAGGGCCACCATGAGAGAGA 60.689 60.000 6.18 0.00 40.13 3.10
715 744 0.690411 AGAGGGCCACCATGAGAGAG 60.690 60.000 6.18 0.00 40.13 3.20
716 745 0.689080 GAGAGGGCCACCATGAGAGA 60.689 60.000 6.18 0.00 40.13 3.10
717 746 0.690411 AGAGAGGGCCACCATGAGAG 60.690 60.000 6.18 0.00 40.13 3.20
718 747 0.689080 GAGAGAGGGCCACCATGAGA 60.689 60.000 6.18 0.00 40.13 3.27
719 748 0.690411 AGAGAGAGGGCCACCATGAG 60.690 60.000 6.18 0.00 40.13 2.90
720 749 0.689080 GAGAGAGAGGGCCACCATGA 60.689 60.000 6.18 0.00 40.13 3.07
721 750 0.690411 AGAGAGAGAGGGCCACCATG 60.690 60.000 6.18 0.00 40.13 3.66
722 751 0.398381 GAGAGAGAGAGGGCCACCAT 60.398 60.000 6.18 0.00 40.13 3.55
723 752 1.000993 GAGAGAGAGAGGGCCACCA 59.999 63.158 6.18 0.00 40.13 4.17
724 753 1.760480 GGAGAGAGAGAGGGCCACC 60.760 68.421 6.18 0.00 0.00 4.61
725 754 0.325203 AAGGAGAGAGAGAGGGCCAC 60.325 60.000 6.18 0.00 0.00 5.01
726 755 0.032615 GAAGGAGAGAGAGAGGGCCA 60.033 60.000 6.18 0.00 0.00 5.36
727 756 0.759060 GGAAGGAGAGAGAGAGGGCC 60.759 65.000 0.00 0.00 0.00 5.80
728 757 0.759060 GGGAAGGAGAGAGAGAGGGC 60.759 65.000 0.00 0.00 0.00 5.19
729 758 0.633921 TGGGAAGGAGAGAGAGAGGG 59.366 60.000 0.00 0.00 0.00 4.30
730 759 1.411501 CCTGGGAAGGAGAGAGAGAGG 60.412 61.905 0.00 0.00 0.00 3.69
731 760 1.568597 TCCTGGGAAGGAGAGAGAGAG 59.431 57.143 0.00 0.00 33.38 3.20
732 761 1.687492 TCCTGGGAAGGAGAGAGAGA 58.313 55.000 0.00 0.00 33.38 3.10
733 762 2.107366 GTTCCTGGGAAGGAGAGAGAG 58.893 57.143 1.88 0.00 39.43 3.20
734 763 1.433199 TGTTCCTGGGAAGGAGAGAGA 59.567 52.381 1.88 0.00 39.43 3.10
735 764 1.944177 TGTTCCTGGGAAGGAGAGAG 58.056 55.000 1.88 0.00 39.43 3.20
736 765 2.158158 TCTTGTTCCTGGGAAGGAGAGA 60.158 50.000 1.88 2.03 39.43 3.10
737 766 2.260822 TCTTGTTCCTGGGAAGGAGAG 58.739 52.381 1.88 0.00 39.43 3.20
738 767 2.415983 TCTTGTTCCTGGGAAGGAGA 57.584 50.000 1.88 6.45 39.43 3.71
739 768 3.064900 CTTCTTGTTCCTGGGAAGGAG 57.935 52.381 1.88 4.33 39.43 3.69
741 770 2.206576 CCTTCTTGTTCCTGGGAAGG 57.793 55.000 12.39 12.39 45.49 3.46
742 771 2.877708 GCTCCTTCTTGTTCCTGGGAAG 60.878 54.545 1.88 0.00 34.49 3.46
743 772 1.073923 GCTCCTTCTTGTTCCTGGGAA 59.926 52.381 0.00 0.00 0.00 3.97
744 773 0.693049 GCTCCTTCTTGTTCCTGGGA 59.307 55.000 0.00 0.00 0.00 4.37
745 774 0.695347 AGCTCCTTCTTGTTCCTGGG 59.305 55.000 0.00 0.00 0.00 4.45
746 775 1.674221 CGAGCTCCTTCTTGTTCCTGG 60.674 57.143 8.47 0.00 0.00 4.45
747 776 1.719600 CGAGCTCCTTCTTGTTCCTG 58.280 55.000 8.47 0.00 0.00 3.86
748 777 0.036858 GCGAGCTCCTTCTTGTTCCT 60.037 55.000 8.47 0.00 0.00 3.36
749 778 1.021920 GGCGAGCTCCTTCTTGTTCC 61.022 60.000 8.47 0.00 0.00 3.62
750 779 1.021920 GGGCGAGCTCCTTCTTGTTC 61.022 60.000 8.47 0.00 0.00 3.18
751 780 1.003233 GGGCGAGCTCCTTCTTGTT 60.003 57.895 8.47 0.00 0.00 2.83
752 781 1.768684 TTGGGCGAGCTCCTTCTTGT 61.769 55.000 8.47 0.00 0.00 3.16
753 782 1.003355 TTGGGCGAGCTCCTTCTTG 60.003 57.895 8.47 0.00 0.00 3.02
754 783 1.298014 CTTGGGCGAGCTCCTTCTT 59.702 57.895 8.47 0.00 0.00 2.52
755 784 2.985456 CTTGGGCGAGCTCCTTCT 59.015 61.111 8.47 0.00 0.00 2.85
756 785 2.821810 GCTTGGGCGAGCTCCTTC 60.822 66.667 8.47 0.00 39.57 3.46
762 791 3.207669 CATGGAGCTTGGGCGAGC 61.208 66.667 3.57 3.57 44.37 5.03
763 792 2.515523 CCATGGAGCTTGGGCGAG 60.516 66.667 5.56 0.00 44.37 5.03
764 793 4.802051 GCCATGGAGCTTGGGCGA 62.802 66.667 18.40 0.00 44.37 5.54
786 815 2.101770 GAAGTAGGACGACGGCGG 59.898 66.667 18.49 0.00 43.17 6.13
787 816 2.277120 CGAAGTAGGACGACGGCG 60.277 66.667 10.39 10.39 44.79 6.46
788 817 2.873288 ACGAAGTAGGACGACGGC 59.127 61.111 0.00 0.00 41.94 5.68
800 829 1.213013 CGGAGGTCACAGGACGAAG 59.787 63.158 0.00 0.00 45.28 3.79
801 830 1.228337 TCGGAGGTCACAGGACGAA 60.228 57.895 0.00 0.00 45.28 3.85
802 831 1.674651 CTCGGAGGTCACAGGACGA 60.675 63.158 0.00 0.00 45.28 4.20
803 832 2.878429 CTCGGAGGTCACAGGACG 59.122 66.667 0.00 0.00 45.28 4.79
804 833 2.219325 CTGCTCGGAGGTCACAGGAC 62.219 65.000 7.20 0.00 43.55 3.85
805 834 1.979155 CTGCTCGGAGGTCACAGGA 60.979 63.158 7.20 0.00 0.00 3.86
806 835 2.575993 CTGCTCGGAGGTCACAGG 59.424 66.667 7.20 0.00 0.00 4.00
807 836 2.125753 GCTGCTCGGAGGTCACAG 60.126 66.667 7.20 6.57 0.00 3.66
808 837 4.056125 CGCTGCTCGGAGGTCACA 62.056 66.667 7.20 0.00 33.78 3.58
827 856 4.899239 GAGCAGATCCGGCGGGTG 62.899 72.222 27.98 21.15 36.08 4.61
830 859 4.637489 CTCGAGCAGATCCGGCGG 62.637 72.222 22.51 22.51 36.08 6.13
832 861 3.839642 GAGCTCGAGCAGATCCGGC 62.840 68.421 36.87 9.86 45.16 6.13
833 862 2.128853 GAGAGCTCGAGCAGATCCGG 62.129 65.000 36.87 0.00 45.16 5.14
834 863 1.282570 GAGAGCTCGAGCAGATCCG 59.717 63.158 36.87 0.00 45.16 4.18
835 864 0.823356 AGGAGAGCTCGAGCAGATCC 60.823 60.000 36.87 34.06 45.16 3.36
836 865 0.593128 GAGGAGAGCTCGAGCAGATC 59.407 60.000 36.87 28.20 45.16 2.75
837 866 1.165907 CGAGGAGAGCTCGAGCAGAT 61.166 60.000 36.87 22.74 46.06 2.90
838 867 1.817520 CGAGGAGAGCTCGAGCAGA 60.818 63.158 36.87 0.00 46.06 4.26
839 868 2.715005 CGAGGAGAGCTCGAGCAG 59.285 66.667 36.87 15.68 46.06 4.24
840 869 3.513438 GCGAGGAGAGCTCGAGCA 61.513 66.667 36.87 0.00 46.06 4.26
841 870 4.264638 GGCGAGGAGAGCTCGAGC 62.265 72.222 30.01 30.01 46.06 5.03
842 871 3.591835 GGGCGAGGAGAGCTCGAG 61.592 72.222 8.45 8.45 46.06 4.04
845 874 3.535962 CAGGGGCGAGGAGAGCTC 61.536 72.222 5.27 5.27 34.52 4.09
856 885 1.448013 GTACTTGAGACGCAGGGGC 60.448 63.158 0.00 0.00 0.00 5.80
857 886 1.218316 GGTACTTGAGACGCAGGGG 59.782 63.158 0.00 0.00 0.00 4.79
858 887 1.153823 CGGTACTTGAGACGCAGGG 60.154 63.158 0.00 0.00 0.00 4.45
859 888 0.732880 CACGGTACTTGAGACGCAGG 60.733 60.000 0.00 0.00 0.00 4.85
860 889 0.039437 ACACGGTACTTGAGACGCAG 60.039 55.000 0.00 0.00 0.00 5.18
861 890 0.039798 GACACGGTACTTGAGACGCA 60.040 55.000 0.00 0.00 0.00 5.24
862 891 1.063951 CGACACGGTACTTGAGACGC 61.064 60.000 0.00 0.00 0.00 5.19
863 892 0.236711 ACGACACGGTACTTGAGACG 59.763 55.000 0.00 0.15 0.00 4.18
864 893 1.265095 TGACGACACGGTACTTGAGAC 59.735 52.381 0.00 0.00 0.00 3.36
865 894 1.596603 TGACGACACGGTACTTGAGA 58.403 50.000 0.00 0.00 0.00 3.27
866 895 2.316792 CTTGACGACACGGTACTTGAG 58.683 52.381 0.00 0.00 0.00 3.02
867 896 1.601162 GCTTGACGACACGGTACTTGA 60.601 52.381 0.00 0.00 0.00 3.02
868 897 0.782384 GCTTGACGACACGGTACTTG 59.218 55.000 0.00 0.00 0.00 3.16
869 898 0.319297 GGCTTGACGACACGGTACTT 60.319 55.000 0.00 0.00 0.00 2.24
870 899 1.288127 GGCTTGACGACACGGTACT 59.712 57.895 0.00 0.00 0.00 2.73
871 900 2.084681 CGGCTTGACGACACGGTAC 61.085 63.158 0.00 0.00 35.47 3.34
872 901 2.256158 CGGCTTGACGACACGGTA 59.744 61.111 0.00 0.00 35.47 4.02
876 905 3.112709 GAGGCGGCTTGACGACAC 61.113 66.667 14.76 0.00 46.48 3.67
877 906 4.373116 GGAGGCGGCTTGACGACA 62.373 66.667 14.76 0.00 46.48 4.35
878 907 3.591254 AAGGAGGCGGCTTGACGAC 62.591 63.158 14.76 0.00 43.75 4.34
879 908 3.311110 AAGGAGGCGGCTTGACGA 61.311 61.111 14.76 0.00 35.47 4.20
880 909 3.121030 CAAGGAGGCGGCTTGACG 61.121 66.667 14.76 0.00 0.00 4.35
881 910 3.435186 GCAAGGAGGCGGCTTGAC 61.435 66.667 14.76 7.07 0.00 3.18
882 911 4.722700 GGCAAGGAGGCGGCTTGA 62.723 66.667 14.76 0.00 33.57 3.02
888 917 4.521062 CTCGAGGGCAAGGAGGCG 62.521 72.222 3.91 0.00 45.36 5.52
889 918 3.378399 GACTCGAGGGCAAGGAGGC 62.378 68.421 18.41 0.00 43.27 4.70
890 919 1.684049 AGACTCGAGGGCAAGGAGG 60.684 63.158 18.41 0.00 32.11 4.30
891 920 1.254284 ACAGACTCGAGGGCAAGGAG 61.254 60.000 18.41 0.18 0.00 3.69
892 921 1.228894 ACAGACTCGAGGGCAAGGA 60.229 57.895 18.41 0.00 0.00 3.36
893 922 1.216710 GACAGACTCGAGGGCAAGG 59.783 63.158 18.41 2.46 0.00 3.61
894 923 1.216710 GGACAGACTCGAGGGCAAG 59.783 63.158 18.41 7.76 0.00 4.01
895 924 1.533033 TGGACAGACTCGAGGGCAA 60.533 57.895 18.41 0.00 0.00 4.52
896 925 1.979155 CTGGACAGACTCGAGGGCA 60.979 63.158 18.41 0.00 0.00 5.36
897 926 1.536943 AACTGGACAGACTCGAGGGC 61.537 60.000 18.41 8.45 0.00 5.19
898 927 0.528470 GAACTGGACAGACTCGAGGG 59.472 60.000 18.41 8.40 0.00 4.30
899 928 0.528470 GGAACTGGACAGACTCGAGG 59.472 60.000 18.41 1.00 0.00 4.63
900 929 0.169230 CGGAACTGGACAGACTCGAG 59.831 60.000 11.84 11.84 0.00 4.04
901 930 1.863662 GCGGAACTGGACAGACTCGA 61.864 60.000 6.29 0.00 0.00 4.04
902 931 1.444553 GCGGAACTGGACAGACTCG 60.445 63.158 6.29 7.31 0.00 4.18
903 932 0.389166 CAGCGGAACTGGACAGACTC 60.389 60.000 6.29 2.41 43.19 3.36
904 933 1.668294 CAGCGGAACTGGACAGACT 59.332 57.895 6.29 0.00 43.19 3.24
905 934 4.268687 CAGCGGAACTGGACAGAC 57.731 61.111 6.29 0.07 43.19 3.51
941 970 4.517703 GAGGACGACGCCGACGAG 62.518 72.222 16.72 0.00 43.93 4.18
968 997 4.814294 GTAGTGGCGACGGGGCTG 62.814 72.222 0.00 0.00 42.84 4.85
970 999 4.814294 CAGTAGTGGCGACGGGGC 62.814 72.222 0.00 0.00 42.69 5.80
971 1000 4.814294 GCAGTAGTGGCGACGGGG 62.814 72.222 0.00 0.00 0.00 5.73
972 1001 3.583276 TTGCAGTAGTGGCGACGGG 62.583 63.158 0.00 0.00 0.00 5.28
973 1002 2.048597 TTGCAGTAGTGGCGACGG 60.049 61.111 0.00 0.00 0.00 4.79
974 1003 1.080772 TCTTGCAGTAGTGGCGACG 60.081 57.895 0.00 0.00 0.00 5.12
975 1004 1.014564 GGTCTTGCAGTAGTGGCGAC 61.015 60.000 0.00 0.00 0.00 5.19
976 1005 1.292223 GGTCTTGCAGTAGTGGCGA 59.708 57.895 0.00 0.00 0.00 5.54
977 1006 1.741770 GGGTCTTGCAGTAGTGGCG 60.742 63.158 0.00 0.00 0.00 5.69
978 1007 1.377333 GGGGTCTTGCAGTAGTGGC 60.377 63.158 0.00 0.00 0.00 5.01
979 1008 1.079127 CGGGGTCTTGCAGTAGTGG 60.079 63.158 0.00 0.00 0.00 4.00
980 1009 1.741770 GCGGGGTCTTGCAGTAGTG 60.742 63.158 0.00 0.00 0.00 2.74
981 1010 2.663196 GCGGGGTCTTGCAGTAGT 59.337 61.111 0.00 0.00 0.00 2.73
982 1011 2.125106 GGCGGGGTCTTGCAGTAG 60.125 66.667 0.00 0.00 0.00 2.57
983 1012 2.297895 ATGGCGGGGTCTTGCAGTA 61.298 57.895 0.00 0.00 0.00 2.74
984 1013 3.650950 ATGGCGGGGTCTTGCAGT 61.651 61.111 0.00 0.00 0.00 4.40
985 1014 3.136123 CATGGCGGGGTCTTGCAG 61.136 66.667 0.00 0.00 0.00 4.41
986 1015 4.738998 CCATGGCGGGGTCTTGCA 62.739 66.667 0.00 0.00 0.00 4.08
987 1016 4.424711 TCCATGGCGGGGTCTTGC 62.425 66.667 6.96 0.00 34.36 4.01
988 1017 2.438434 GTCCATGGCGGGGTCTTG 60.438 66.667 6.96 0.00 34.36 3.02
989 1018 2.933287 TGTCCATGGCGGGGTCTT 60.933 61.111 6.96 0.00 34.36 3.01
990 1019 3.717294 GTGTCCATGGCGGGGTCT 61.717 66.667 6.96 0.00 34.36 3.85
991 1020 4.796495 GGTGTCCATGGCGGGGTC 62.796 72.222 6.96 0.00 34.36 4.46
1009 1038 4.368543 GGGTGGTCGTCGGTGGAC 62.369 72.222 0.00 0.00 39.89 4.02
1010 1039 4.918278 TGGGTGGTCGTCGGTGGA 62.918 66.667 0.00 0.00 0.00 4.02
1011 1040 4.373116 CTGGGTGGTCGTCGGTGG 62.373 72.222 0.00 0.00 0.00 4.61
1012 1041 4.373116 CCTGGGTGGTCGTCGGTG 62.373 72.222 0.00 0.00 0.00 4.94
1021 1050 1.978617 GGCAACATGACCTGGGTGG 60.979 63.158 0.00 0.00 42.93 4.61
1022 1051 2.334946 CGGCAACATGACCTGGGTG 61.335 63.158 0.00 0.00 0.00 4.61
1023 1052 2.034066 CGGCAACATGACCTGGGT 59.966 61.111 0.00 0.00 0.00 4.51
1024 1053 2.034066 ACGGCAACATGACCTGGG 59.966 61.111 0.00 0.00 0.00 4.45
1025 1054 1.302431 TCACGGCAACATGACCTGG 60.302 57.895 0.00 0.00 0.00 4.45
1026 1055 1.868997 GTCACGGCAACATGACCTG 59.131 57.895 0.00 0.00 39.49 4.00
1027 1056 4.379174 GTCACGGCAACATGACCT 57.621 55.556 0.00 0.00 39.49 3.85
1029 1058 1.868997 CAGGTCACGGCAACATGAC 59.131 57.895 0.00 0.00 43.75 3.06
1030 1059 1.965930 GCAGGTCACGGCAACATGA 60.966 57.895 0.00 0.00 37.75 3.07
1031 1060 2.562912 GCAGGTCACGGCAACATG 59.437 61.111 0.00 0.00 37.75 3.21
1032 1061 2.672996 GGCAGGTCACGGCAACAT 60.673 61.111 0.00 0.00 39.73 2.71
1033 1062 3.825160 GAGGCAGGTCACGGCAACA 62.825 63.158 0.00 0.00 39.73 3.33
1034 1063 3.050275 GAGGCAGGTCACGGCAAC 61.050 66.667 0.00 0.00 39.73 4.17
1035 1064 4.329545 GGAGGCAGGTCACGGCAA 62.330 66.667 0.00 0.00 39.73 4.52
1037 1066 4.459089 GAGGAGGCAGGTCACGGC 62.459 72.222 0.00 0.00 37.05 5.68
1038 1067 2.681778 AGAGGAGGCAGGTCACGG 60.682 66.667 0.00 0.00 0.00 4.94
1039 1068 2.575993 CAGAGGAGGCAGGTCACG 59.424 66.667 0.00 0.00 0.00 4.35
1040 1069 1.908340 ATGCAGAGGAGGCAGGTCAC 61.908 60.000 0.00 0.00 45.68 3.67
1041 1070 1.614525 ATGCAGAGGAGGCAGGTCA 60.615 57.895 0.00 0.00 45.68 4.02
1042 1071 1.145819 GATGCAGAGGAGGCAGGTC 59.854 63.158 0.00 0.00 45.68 3.85
1043 1072 2.729479 CGATGCAGAGGAGGCAGGT 61.729 63.158 0.00 0.00 45.68 4.00
1044 1073 2.108566 CGATGCAGAGGAGGCAGG 59.891 66.667 0.00 0.00 45.68 4.85
1045 1074 2.588314 GCGATGCAGAGGAGGCAG 60.588 66.667 0.00 0.00 45.68 4.85
1070 1099 4.269523 AGAAGCAGGGCAACGGCA 62.270 61.111 5.67 0.00 43.71 5.69
1074 1103 2.980233 ACGCAGAAGCAGGGCAAC 60.980 61.111 0.00 0.00 42.27 4.17
1108 1137 2.315386 GGACTTGGCGTTGGTCGTC 61.315 63.158 0.00 0.00 45.13 4.20
1116 1145 1.004440 GAGAAGCAGGACTTGGCGT 60.004 57.895 0.00 0.00 39.29 5.68
1122 1151 0.832135 TCAACGGGAGAAGCAGGACT 60.832 55.000 0.00 0.00 0.00 3.85
1127 1156 2.342279 CGGTCAACGGGAGAAGCA 59.658 61.111 0.00 0.00 39.42 3.91
1134 1172 3.583276 TAGCACAGCGGTCAACGGG 62.583 63.158 0.00 0.00 44.51 5.28
1150 1188 0.103208 CTTGGCACGGCTAGACCTAG 59.897 60.000 0.00 0.00 35.61 3.02
1151 1189 1.956629 GCTTGGCACGGCTAGACCTA 61.957 60.000 6.25 0.00 35.61 3.08
1152 1190 2.982130 CTTGGCACGGCTAGACCT 59.018 61.111 0.00 0.00 35.61 3.85
1154 1192 2.820037 GGCTTGGCACGGCTAGAC 60.820 66.667 10.41 0.00 0.00 2.59
1155 1193 4.096003 GGGCTTGGCACGGCTAGA 62.096 66.667 16.88 0.00 0.00 2.43
1156 1194 4.408821 TGGGCTTGGCACGGCTAG 62.409 66.667 16.88 0.00 32.76 3.42
1157 1195 4.408821 CTGGGCTTGGCACGGCTA 62.409 66.667 16.88 10.38 32.76 3.93
1179 1233 3.333219 TGGAGAGGCCAAGGCAGG 61.333 66.667 13.87 0.00 45.87 4.85
1206 1261 3.368571 GCTCACCACAGGCCAAGC 61.369 66.667 5.01 0.00 0.00 4.01
1208 1263 2.113774 CTGCTCACCACAGGCCAA 59.886 61.111 5.01 0.00 0.00 4.52
1212 1267 3.914579 CTGGGCTGCTCACCACAGG 62.915 68.421 0.00 0.00 35.62 4.00
1213 1268 2.359602 CTGGGCTGCTCACCACAG 60.360 66.667 0.00 0.00 38.22 3.66
1214 1269 4.648626 GCTGGGCTGCTCACCACA 62.649 66.667 0.00 0.00 32.33 4.17
1229 1284 0.687427 AAACAAAGCACTGGGTGGCT 60.687 50.000 0.00 0.00 43.46 4.75
1233 1288 1.328279 GCCTAAACAAAGCACTGGGT 58.672 50.000 0.00 0.00 0.00 4.51
1236 1291 1.270550 CTGGGCCTAAACAAAGCACTG 59.729 52.381 4.53 0.00 0.00 3.66
1237 1292 1.133482 ACTGGGCCTAAACAAAGCACT 60.133 47.619 4.53 0.00 0.00 4.40
1238 1293 1.328279 ACTGGGCCTAAACAAAGCAC 58.672 50.000 4.53 0.00 0.00 4.40
1239 1294 1.960689 GAACTGGGCCTAAACAAAGCA 59.039 47.619 4.53 0.00 0.00 3.91
1240 1295 2.239400 AGAACTGGGCCTAAACAAAGC 58.761 47.619 4.53 0.00 0.00 3.51
1241 1296 3.440522 GCTAGAACTGGGCCTAAACAAAG 59.559 47.826 4.53 0.00 0.00 2.77
1242 1297 3.181438 TGCTAGAACTGGGCCTAAACAAA 60.181 43.478 4.53 0.00 0.00 2.83
1244 1299 1.982226 TGCTAGAACTGGGCCTAAACA 59.018 47.619 4.53 0.00 0.00 2.83
1245 1300 2.236395 TCTGCTAGAACTGGGCCTAAAC 59.764 50.000 4.53 0.00 0.00 2.01
1247 1302 2.247699 TCTGCTAGAACTGGGCCTAA 57.752 50.000 4.53 0.00 0.00 2.69
1248 1303 2.478872 ATCTGCTAGAACTGGGCCTA 57.521 50.000 4.53 0.00 0.00 3.93
1249 1304 1.488393 GAATCTGCTAGAACTGGGCCT 59.512 52.381 4.53 0.00 0.00 5.19
1250 1305 1.808133 CGAATCTGCTAGAACTGGGCC 60.808 57.143 0.00 0.00 0.00 5.80
1260 1315 1.618837 GTCTATGGGCCGAATCTGCTA 59.381 52.381 0.00 0.00 0.00 3.49
1262 1317 0.106708 TGTCTATGGGCCGAATCTGC 59.893 55.000 0.00 0.00 0.00 4.26
1312 1368 8.462589 TTTCTATAATTATGCATGCACAGGAA 57.537 30.769 25.37 15.01 0.00 3.36
1355 1412 7.436430 TGCACGGTTTATGAGTTATTAACAA 57.564 32.000 9.15 0.00 31.58 2.83
1597 1660 9.176181 AGTTGTTAAACATGCAAATTAAGTACG 57.824 29.630 0.00 0.00 38.88 3.67
1632 1695 4.860022 AGCTAATGTTCAGCCCTAAACAT 58.140 39.130 0.00 0.00 45.53 2.71
1643 1706 8.835439 TGCATATTTCGAATTAGCTAATGTTCA 58.165 29.630 19.53 4.21 0.00 3.18
1660 1723 7.121168 TCCGGAAAATCCTCATATGCATATTTC 59.879 37.037 16.71 15.22 33.30 2.17
1696 1761 5.842907 AGTTTAAATGAGGCTGGAAACAAC 58.157 37.500 0.00 0.00 42.06 3.32
1697 1762 6.279882 CAAGTTTAAATGAGGCTGGAAACAA 58.720 36.000 0.00 0.00 42.06 2.83
1699 1764 4.686091 GCAAGTTTAAATGAGGCTGGAAAC 59.314 41.667 0.00 0.00 0.00 2.78
1901 1971 6.448207 TGATGCATGTCCGATTTAATGAAA 57.552 33.333 2.46 0.00 0.00 2.69
1902 1972 6.638096 ATGATGCATGTCCGATTTAATGAA 57.362 33.333 2.46 0.00 0.00 2.57
1967 2041 5.397326 CCAGAAAGAAGAAAGCAACATAGC 58.603 41.667 0.00 0.00 0.00 2.97
1979 2068 3.392616 AGAGAAGCAACCCAGAAAGAAGA 59.607 43.478 0.00 0.00 0.00 2.87
1988 2077 1.337823 GCTAACGAGAGAAGCAACCCA 60.338 52.381 0.00 0.00 41.18 4.51
2042 2133 4.005650 AGATAGACGAACCAACGTAGTCA 58.994 43.478 0.00 0.00 45.00 3.41
2052 2143 1.202382 CGGGTCCAAGATAGACGAACC 60.202 57.143 0.00 0.00 34.97 3.62
2056 2148 1.749634 AGAACGGGTCCAAGATAGACG 59.250 52.381 0.00 0.00 34.97 4.18
2064 2172 3.211045 CAAGAAAGAAGAACGGGTCCAA 58.789 45.455 0.00 0.00 0.00 3.53
2070 2178 0.517316 CCCGCAAGAAAGAAGAACGG 59.483 55.000 0.00 0.00 43.02 4.44
2081 2189 1.552799 TTGCCTGAGATCCCGCAAGA 61.553 55.000 3.10 0.00 36.36 3.02
2126 2235 8.438676 AGCGAACAACTAGCAAGAAAATATAT 57.561 30.769 0.00 0.00 0.00 0.86
2156 2267 1.811359 GGTAGGTAGCGCGACATAGAT 59.189 52.381 22.25 5.09 0.00 1.98
2157 2268 1.233019 GGTAGGTAGCGCGACATAGA 58.767 55.000 22.25 0.00 0.00 1.98
2196 2308 8.168058 AGGGTTGAAAAAGTTTAGAGGCTATTA 58.832 33.333 0.00 0.00 0.00 0.98
2199 2311 5.948842 AGGGTTGAAAAAGTTTAGAGGCTA 58.051 37.500 0.00 0.00 0.00 3.93
2200 2312 4.804597 AGGGTTGAAAAAGTTTAGAGGCT 58.195 39.130 0.00 0.00 0.00 4.58
2201 2313 4.022242 GGAGGGTTGAAAAAGTTTAGAGGC 60.022 45.833 0.00 0.00 0.00 4.70
2234 2357 3.418047 AGCGGTAACTTAGCCAAACAAT 58.582 40.909 0.00 0.00 0.00 2.71
2246 2369 2.152016 GGCTGAGAAAAAGCGGTAACT 58.848 47.619 0.00 0.00 41.78 2.24
2259 2383 1.133450 ACGCTATAAGAGGGGCTGAGA 60.133 52.381 0.00 0.00 42.42 3.27
2333 2470 8.689251 TTAAAGAAGAGATAATGCGATATCCG 57.311 34.615 0.00 0.00 42.21 4.18
2378 2519 1.351017 CAGAGCCTTCCACCCTTTACA 59.649 52.381 0.00 0.00 0.00 2.41
2481 2624 1.770061 GGACCCATAATCCCAACCGTA 59.230 52.381 0.00 0.00 0.00 4.02
2499 2645 2.747686 GCGAACTGTCAAGGGGGA 59.252 61.111 0.00 0.00 0.00 4.81
2547 2693 5.892568 TGTTACGCAAATGTAAAACCAAGT 58.107 33.333 0.00 0.00 36.17 3.16
2565 2712 7.065923 CCAAGAGAAATAGGCTTAGGTTGTTAC 59.934 40.741 0.00 0.00 0.00 2.50
2581 2733 4.017126 GGATCCGAAAACCCAAGAGAAAT 58.983 43.478 0.00 0.00 0.00 2.17
2586 2738 3.970205 GGGATCCGAAAACCCAAGA 57.030 52.632 5.45 0.00 42.81 3.02
2598 2750 2.011122 TAAGATGACCCTCGGGATCC 57.989 55.000 9.43 1.92 38.96 3.36
2642 2799 1.120530 AGTTCGGACCAACACTCAGT 58.879 50.000 0.00 0.00 0.00 3.41
2709 2866 2.604046 GGATGAGCACTCCGTACAAT 57.396 50.000 0.00 0.00 0.00 2.71
2752 2910 2.611473 CGAATCCCGATAAGAGCTGCAT 60.611 50.000 1.02 0.00 41.76 3.96
2761 2919 1.478916 TGTGCTGACGAATCCCGATAA 59.521 47.619 0.00 0.00 41.76 1.75
2772 2931 2.741985 TGCCCGAATGTGCTGACG 60.742 61.111 0.00 0.00 0.00 4.35
2776 2935 1.604593 AAAGCTGCCCGAATGTGCT 60.605 52.632 0.00 0.00 35.30 4.40
2782 2941 1.452145 GACCAACAAAGCTGCCCGAA 61.452 55.000 0.00 0.00 0.00 4.30
2789 2948 4.464597 TGGTAAAACAAGACCAACAAAGCT 59.535 37.500 0.00 0.00 42.81 3.74
2939 3101 1.226746 ACTACAGGCACGACTTTTGC 58.773 50.000 0.00 0.00 39.41 3.68
2953 3115 5.675684 TTCACATCTGCCTCATAACTACA 57.324 39.130 0.00 0.00 0.00 2.74
2955 3117 7.112122 ACAAATTCACATCTGCCTCATAACTA 58.888 34.615 0.00 0.00 0.00 2.24
2956 3118 5.948162 ACAAATTCACATCTGCCTCATAACT 59.052 36.000 0.00 0.00 0.00 2.24
2963 3125 6.392354 CACATTAACAAATTCACATCTGCCT 58.608 36.000 0.00 0.00 0.00 4.75
2972 3134 4.938080 ACAACCGCACATTAACAAATTCA 58.062 34.783 0.00 0.00 0.00 2.57
2987 3150 2.475487 GTGTCAAGTTCTCTACAACCGC 59.525 50.000 0.00 0.00 0.00 5.68
3026 3190 1.519408 GGCTACACACGTGGTTGATT 58.481 50.000 21.57 0.00 34.19 2.57
3034 3198 1.080093 CCATCACGGCTACACACGT 60.080 57.895 0.00 0.00 45.25 4.49
3053 3217 1.511768 GGACTCCGTCGGAAAGAGG 59.488 63.158 16.23 5.65 32.65 3.69
3063 3227 1.532316 TTCACTTCCCGGACTCCGT 60.532 57.895 16.35 0.00 46.80 4.69
3085 3249 3.074412 CGTTCAAGCATAACCCAAGACT 58.926 45.455 0.00 0.00 0.00 3.24
3088 3252 4.454504 ACTTACGTTCAAGCATAACCCAAG 59.545 41.667 0.00 0.00 0.00 3.61
3148 3315 1.201414 TGAGAAGCTACGCAACGATCA 59.799 47.619 0.00 0.00 0.00 2.92
3151 3318 1.472878 AGATGAGAAGCTACGCAACGA 59.527 47.619 0.00 0.00 0.00 3.85
3160 3327 6.478344 CGCAAATAAGAGTAAGATGAGAAGCT 59.522 38.462 0.00 0.00 0.00 3.74
3168 3335 8.979574 GCTAACATACGCAAATAAGAGTAAGAT 58.020 33.333 0.00 0.00 0.00 2.40
3210 3377 1.598962 GTGGAGCTGCAGCAAGTGA 60.599 57.895 38.24 15.78 45.16 3.41
3211 3378 2.623915 GGTGGAGCTGCAGCAAGTG 61.624 63.158 38.24 2.18 45.16 3.16
3212 3379 2.282040 GGTGGAGCTGCAGCAAGT 60.282 61.111 38.24 20.29 45.16 3.16
3275 3445 1.277557 GGACTCAGCAATCTCACACCT 59.722 52.381 0.00 0.00 0.00 4.00
3323 3496 0.604780 GGTATCATCGGCAGCTGCAT 60.605 55.000 37.63 24.55 44.36 3.96
3329 3502 0.179076 TGCACTGGTATCATCGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
3350 3523 0.644331 CTTGAGCTCGATTGCGTCAG 59.356 55.000 9.64 0.00 38.98 3.51
3395 3568 5.533154 TCAACCGGAAAAGACACATAACAAT 59.467 36.000 9.46 0.00 0.00 2.71
3405 3581 4.389077 CACTACTGATCAACCGGAAAAGAC 59.611 45.833 9.46 0.00 0.00 3.01
3414 3590 1.279271 AGGCACCACTACTGATCAACC 59.721 52.381 0.00 0.00 0.00 3.77
3445 3621 2.175499 CCCCAAATGCTAGATCCCTGAA 59.825 50.000 0.00 0.00 0.00 3.02
3532 3718 2.584791 GCCACTTCGCACAAATAACAG 58.415 47.619 0.00 0.00 0.00 3.16
3544 3730 0.373716 GGCTTACAATCGCCACTTCG 59.626 55.000 0.00 0.00 45.59 3.79
3672 3863 1.959042 CCCATGATGCGGCTATATCC 58.041 55.000 0.00 0.00 0.00 2.59
3953 4157 2.301870 AGGCACCGAGAACAATGTTCTA 59.698 45.455 26.41 0.00 0.00 2.10
3967 4171 1.656652 CTAAATGTGAGGAGGCACCG 58.343 55.000 0.00 0.00 44.74 4.94
3978 4182 1.545582 CTGCCACAACCCCTAAATGTG 59.454 52.381 0.00 0.00 43.10 3.21
4007 4212 2.120718 ACCTCGGGGCTCAACTCT 59.879 61.111 0.00 0.00 35.63 3.24
4017 4222 1.663702 GTGACGACAACACCTCGGG 60.664 63.158 0.00 0.00 35.37 5.14
4117 4323 2.283529 CCAGTACTGGGTGGCGTCT 61.284 63.158 31.15 0.00 46.81 4.18
4147 4353 7.376615 GTTATACGAGTTATGGCAATACTCCT 58.623 38.462 20.11 14.07 0.00 3.69
4182 4388 0.599558 TCGTGTACCTCAACCTTCGG 59.400 55.000 0.00 0.00 0.00 4.30
4262 4469 6.775629 GGGAAGCATAATATCTAACCCAAACA 59.224 38.462 0.00 0.00 35.41 2.83
4271 4479 6.615726 GGGATACAGGGGAAGCATAATATCTA 59.384 42.308 0.00 0.00 39.74 1.98
4368 4576 2.661675 CGTATCACGTGTCTGTTGGAAG 59.338 50.000 16.51 0.00 36.74 3.46
4382 4590 6.716934 ATGATAGACCCCATATCGTATCAC 57.283 41.667 0.00 0.00 33.20 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.