Multiple sequence alignment - TraesCS5A01G289500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G289500 chr5A 100.000 2079 0 0 876 2954 496175850 496173772 0.000000e+00 3840
1 TraesCS5A01G289500 chr5A 100.000 578 0 0 1 578 496176725 496176148 0.000000e+00 1068
2 TraesCS5A01G289500 chr5A 86.169 629 46 15 1205 1807 496536490 496535877 2.480000e-180 641
3 TraesCS5A01G289500 chr5A 80.813 615 64 36 1217 1814 496204816 496204239 1.630000e-117 433
4 TraesCS5A01G289500 chr5A 90.037 271 16 2 876 1135 496536794 496536524 1.010000e-89 340
5 TraesCS5A01G289500 chr5A 89.916 238 19 4 1 233 496537113 496536876 4.780000e-78 302
6 TraesCS5A01G289500 chr5A 77.954 567 50 29 1234 1762 496566387 496565858 4.820000e-73 285
7 TraesCS5A01G289500 chr5A 88.024 167 13 3 2550 2716 496533661 496533502 1.080000e-44 191
8 TraesCS5A01G289500 chr5A 87.129 101 10 2 2819 2918 496187729 496187631 8.650000e-21 111
9 TraesCS5A01G289500 chr5B 88.008 984 59 25 876 1814 474056711 474055742 0.000000e+00 1109
10 TraesCS5A01G289500 chr5B 80.851 517 49 20 1234 1715 474279003 474278502 7.780000e-96 361
11 TraesCS5A01G289500 chr5B 78.330 563 64 31 1218 1761 428853272 428853795 7.950000e-81 311
12 TraesCS5A01G289500 chr5B 78.676 544 56 29 1234 1762 474453436 474452938 1.030000e-79 307
13 TraesCS5A01G289500 chr5B 84.138 290 29 8 2544 2827 474055048 474054770 6.280000e-67 265
14 TraesCS5A01G289500 chr5B 95.620 137 6 0 5 141 474056988 474056852 1.380000e-53 220
15 TraesCS5A01G289500 chr5B 86.893 206 14 9 2223 2418 474055395 474055193 4.960000e-53 219
16 TraesCS5A01G289500 chr5B 86.923 130 14 2 1946 2072 474055545 474055416 3.070000e-30 143
17 TraesCS5A01G289500 chr5D 86.047 903 57 26 876 1734 394190871 394189994 0.000000e+00 905
18 TraesCS5A01G289500 chr5D 89.685 349 28 7 234 578 362192932 362192588 3.500000e-119 438
19 TraesCS5A01G289500 chr5D 84.597 422 42 16 2522 2941 394189197 394188797 5.930000e-107 398
20 TraesCS5A01G289500 chr5D 78.536 601 60 37 1234 1814 394548797 394548246 6.100000e-87 331
21 TraesCS5A01G289500 chr5D 78.536 601 60 37 1234 1814 394550810 394550259 6.100000e-87 331
22 TraesCS5A01G289500 chr5D 88.532 218 11 5 2 205 394191174 394190957 4.890000e-63 252
23 TraesCS5A01G289500 chr5D 75.283 619 69 49 1234 1814 394280858 394280286 4.960000e-53 219
24 TraesCS5A01G289500 chr5D 81.579 152 19 6 1663 1814 394242247 394242105 1.860000e-22 117
25 TraesCS5A01G289500 chr1A 93.660 347 17 4 236 578 161668614 161668269 5.650000e-142 514
26 TraesCS5A01G289500 chr7A 92.286 350 20 6 234 578 85028776 85029123 9.510000e-135 490
27 TraesCS5A01G289500 chr7A 91.691 349 22 6 234 578 545066087 545065742 7.410000e-131 477
28 TraesCS5A01G289500 chr7A 97.638 127 3 0 2099 2225 709635492 709635366 4.960000e-53 219
29 TraesCS5A01G289500 chr7A 97.638 127 3 0 2099 2225 714589237 714589363 4.960000e-53 219
30 TraesCS5A01G289500 chr2A 90.805 348 26 5 234 578 672443087 672443431 7.460000e-126 460
31 TraesCS5A01G289500 chr3A 91.420 338 21 7 234 566 57205711 57206045 9.650000e-125 457
32 TraesCS5A01G289500 chr3A 98.425 127 2 0 2099 2225 688451377 688451251 1.070000e-54 224
33 TraesCS5A01G289500 chr2D 90.313 351 24 8 229 575 483149123 483149467 4.490000e-123 451
34 TraesCS5A01G289500 chr2D 97.638 127 3 0 2099 2225 73325894 73326020 4.960000e-53 219
35 TraesCS5A01G289500 chrUn 90.616 341 23 8 234 569 28728847 28729183 7.510000e-121 444
36 TraesCS5A01G289500 chrUn 78.536 601 60 37 1234 1814 332176339 332175788 6.100000e-87 331
37 TraesCS5A01G289500 chr7D 90.145 345 25 7 234 575 596257334 596257672 9.720000e-120 440
38 TraesCS5A01G289500 chr7B 98.485 132 1 1 2094 2225 154162466 154162596 6.370000e-57 231
39 TraesCS5A01G289500 chr6B 99.213 127 1 0 2099 2225 6878310 6878436 2.290000e-56 230
40 TraesCS5A01G289500 chr4B 97.015 134 3 1 2092 2225 617203601 617203733 1.070000e-54 224
41 TraesCS5A01G289500 chr3D 97.638 127 3 0 2099 2225 470486038 470486164 4.960000e-53 219
42 TraesCS5A01G289500 chr1B 97.638 127 3 0 2099 2225 661131020 661131146 4.960000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G289500 chr5A 496173772 496176725 2953 True 2454.000000 3840 100.0000 1 2954 2 chr5A.!!$R4 2953
1 TraesCS5A01G289500 chr5A 496204239 496204816 577 True 433.000000 433 80.8130 1217 1814 1 chr5A.!!$R2 597
2 TraesCS5A01G289500 chr5A 496533502 496537113 3611 True 368.500000 641 88.5365 1 2716 4 chr5A.!!$R5 2715
3 TraesCS5A01G289500 chr5A 496565858 496566387 529 True 285.000000 285 77.9540 1234 1762 1 chr5A.!!$R3 528
4 TraesCS5A01G289500 chr5B 474054770 474056988 2218 True 391.200000 1109 88.3164 5 2827 5 chr5B.!!$R3 2822
5 TraesCS5A01G289500 chr5B 474278502 474279003 501 True 361.000000 361 80.8510 1234 1715 1 chr5B.!!$R1 481
6 TraesCS5A01G289500 chr5B 428853272 428853795 523 False 311.000000 311 78.3300 1218 1761 1 chr5B.!!$F1 543
7 TraesCS5A01G289500 chr5D 394188797 394191174 2377 True 518.333333 905 86.3920 2 2941 3 chr5D.!!$R4 2939
8 TraesCS5A01G289500 chr5D 394548246 394550810 2564 True 331.000000 331 78.5360 1234 1814 2 chr5D.!!$R5 580
9 TraesCS5A01G289500 chr5D 394280286 394280858 572 True 219.000000 219 75.2830 1234 1814 1 chr5D.!!$R3 580
10 TraesCS5A01G289500 chrUn 332175788 332176339 551 True 331.000000 331 78.5360 1234 1814 1 chrUn.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 421 0.042188 CCAACGTTGACTTCACAGCG 60.042 55.0 29.35 4.69 46.51 5.18 F
400 422 0.927537 CAACGTTGACTTCACAGCGA 59.072 50.0 23.90 0.00 44.63 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1506 0.035439 TTCTTCTTGGGCGTGGGATC 60.035 55.0 0.0 0.0 0.0 3.36 R
2136 4465 0.036765 GGCCACGTTGTCATCCTGTA 60.037 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 255 2.872557 CCACAATGAGGCAGCGTG 59.127 61.111 0.00 0.00 0.00 5.34
234 256 2.693762 CCACAATGAGGCAGCGTGG 61.694 63.158 0.00 0.00 41.06 4.94
235 257 1.672030 CACAATGAGGCAGCGTGGA 60.672 57.895 0.00 0.00 0.00 4.02
236 258 1.073025 ACAATGAGGCAGCGTGGAA 59.927 52.632 0.00 0.00 0.00 3.53
238 260 0.813184 CAATGAGGCAGCGTGGAAAT 59.187 50.000 0.00 0.00 0.00 2.17
240 262 2.620115 CAATGAGGCAGCGTGGAAATAT 59.380 45.455 0.00 0.00 0.00 1.28
241 263 1.953559 TGAGGCAGCGTGGAAATATC 58.046 50.000 0.00 0.00 0.00 1.63
243 265 0.839946 AGGCAGCGTGGAAATATCCT 59.160 50.000 0.00 0.00 46.70 3.24
245 267 2.024414 GGCAGCGTGGAAATATCCTTT 58.976 47.619 0.00 0.00 46.70 3.11
249 271 2.024414 GCGTGGAAATATCCTTTGGCT 58.976 47.619 0.00 0.00 46.70 4.75
250 272 2.033424 GCGTGGAAATATCCTTTGGCTC 59.967 50.000 0.00 0.00 46.70 4.70
253 275 4.526970 GTGGAAATATCCTTTGGCTCTCA 58.473 43.478 0.00 0.00 46.70 3.27
254 276 5.136105 GTGGAAATATCCTTTGGCTCTCAT 58.864 41.667 0.00 0.00 46.70 2.90
255 277 5.009410 GTGGAAATATCCTTTGGCTCTCATG 59.991 44.000 0.00 0.00 46.70 3.07
256 278 5.136105 GGAAATATCCTTTGGCTCTCATGT 58.864 41.667 0.00 0.00 42.93 3.21
257 279 6.126507 TGGAAATATCCTTTGGCTCTCATGTA 60.127 38.462 0.00 0.00 46.70 2.29
258 280 6.944862 GGAAATATCCTTTGGCTCTCATGTAT 59.055 38.462 0.00 0.00 42.93 2.29
259 281 8.103305 GGAAATATCCTTTGGCTCTCATGTATA 58.897 37.037 0.00 0.00 42.93 1.47
260 282 9.678260 GAAATATCCTTTGGCTCTCATGTATAT 57.322 33.333 0.00 0.00 0.00 0.86
263 285 6.994421 TCCTTTGGCTCTCATGTATATACA 57.006 37.500 17.65 17.65 40.98 2.29
264 286 6.759272 TCCTTTGGCTCTCATGTATATACAC 58.241 40.000 17.69 4.24 39.30 2.90
266 288 6.239714 CCTTTGGCTCTCATGTATATACACCT 60.240 42.308 17.69 0.25 39.30 4.00
267 289 6.747414 TTGGCTCTCATGTATATACACCTT 57.253 37.500 17.69 0.00 39.30 3.50
268 290 7.849322 TTGGCTCTCATGTATATACACCTTA 57.151 36.000 17.69 4.07 39.30 2.69
269 291 8.435931 TTGGCTCTCATGTATATACACCTTAT 57.564 34.615 17.69 0.00 39.30 1.73
270 292 9.541884 TTGGCTCTCATGTATATACACCTTATA 57.458 33.333 17.69 1.79 39.30 0.98
350 372 9.695526 TTAGATTAAACTTGACTTACTTACGCA 57.304 29.630 0.00 0.00 0.00 5.24
351 373 8.773404 AGATTAAACTTGACTTACTTACGCAT 57.227 30.769 0.00 0.00 0.00 4.73
352 374 9.216117 AGATTAAACTTGACTTACTTACGCATT 57.784 29.630 0.00 0.00 0.00 3.56
355 377 7.958053 AAACTTGACTTACTTACGCATTAGT 57.042 32.000 0.00 0.00 0.00 2.24
357 379 9.649167 AAACTTGACTTACTTACGCATTAGTAT 57.351 29.630 0.00 0.00 0.00 2.12
394 416 5.379732 AAAAAGAACCAACGTTGACTTCA 57.620 34.783 29.35 0.00 30.30 3.02
395 417 4.351131 AAAGAACCAACGTTGACTTCAC 57.649 40.909 29.35 13.27 30.30 3.18
396 418 2.980568 AGAACCAACGTTGACTTCACA 58.019 42.857 29.35 0.00 30.30 3.58
397 419 2.936498 AGAACCAACGTTGACTTCACAG 59.064 45.455 29.35 12.16 30.30 3.66
398 420 1.014352 ACCAACGTTGACTTCACAGC 58.986 50.000 29.35 0.00 0.00 4.40
399 421 0.042188 CCAACGTTGACTTCACAGCG 60.042 55.000 29.35 4.69 46.51 5.18
400 422 0.927537 CAACGTTGACTTCACAGCGA 59.072 50.000 23.90 0.00 44.63 4.93
401 423 1.326245 CAACGTTGACTTCACAGCGAA 59.674 47.619 23.90 0.00 44.63 4.70
402 424 1.647346 ACGTTGACTTCACAGCGAAA 58.353 45.000 11.22 0.00 44.63 3.46
403 425 2.004017 ACGTTGACTTCACAGCGAAAA 58.996 42.857 11.22 0.00 44.63 2.29
404 426 2.417239 ACGTTGACTTCACAGCGAAAAA 59.583 40.909 11.22 0.00 44.63 1.94
405 427 3.029074 CGTTGACTTCACAGCGAAAAAG 58.971 45.455 0.00 0.00 44.63 2.27
406 428 3.242284 CGTTGACTTCACAGCGAAAAAGA 60.242 43.478 0.00 0.00 44.63 2.52
407 429 4.552767 CGTTGACTTCACAGCGAAAAAGAT 60.553 41.667 0.00 0.00 44.63 2.40
408 430 5.333035 CGTTGACTTCACAGCGAAAAAGATA 60.333 40.000 0.00 0.00 44.63 1.98
409 431 6.427150 GTTGACTTCACAGCGAAAAAGATAA 58.573 36.000 0.00 0.00 31.71 1.75
410 432 6.612247 TGACTTCACAGCGAAAAAGATAAA 57.388 33.333 0.00 0.00 31.71 1.40
411 433 7.022055 TGACTTCACAGCGAAAAAGATAAAA 57.978 32.000 0.00 0.00 31.71 1.52
412 434 7.648142 TGACTTCACAGCGAAAAAGATAAAAT 58.352 30.769 0.00 0.00 31.71 1.82
413 435 8.134895 TGACTTCACAGCGAAAAAGATAAAATT 58.865 29.630 0.00 0.00 31.71 1.82
414 436 8.871686 ACTTCACAGCGAAAAAGATAAAATTT 57.128 26.923 0.00 0.00 31.71 1.82
415 437 9.959749 ACTTCACAGCGAAAAAGATAAAATTTA 57.040 25.926 0.00 0.00 31.71 1.40
441 463 8.812147 TTTGCTATTATAGGTCACTATTCACG 57.188 34.615 1.12 0.00 40.35 4.35
442 464 6.387465 TGCTATTATAGGTCACTATTCACGC 58.613 40.000 1.12 0.00 40.35 5.34
443 465 6.208797 TGCTATTATAGGTCACTATTCACGCT 59.791 38.462 1.12 0.00 40.35 5.07
444 466 7.392393 TGCTATTATAGGTCACTATTCACGCTA 59.608 37.037 1.12 0.00 40.35 4.26
445 467 8.407064 GCTATTATAGGTCACTATTCACGCTAT 58.593 37.037 1.12 0.00 40.35 2.97
448 470 9.998106 ATTATAGGTCACTATTCACGCTATTTT 57.002 29.630 0.00 0.00 40.35 1.82
449 471 7.715265 ATAGGTCACTATTCACGCTATTTTG 57.285 36.000 0.00 0.00 36.51 2.44
450 472 5.730550 AGGTCACTATTCACGCTATTTTGA 58.269 37.500 0.00 0.00 0.00 2.69
451 473 5.581085 AGGTCACTATTCACGCTATTTTGAC 59.419 40.000 0.00 0.00 0.00 3.18
452 474 5.220605 GGTCACTATTCACGCTATTTTGACC 60.221 44.000 0.00 0.00 42.64 4.02
453 475 4.565166 TCACTATTCACGCTATTTTGACCG 59.435 41.667 0.00 0.00 0.00 4.79
454 476 4.565166 CACTATTCACGCTATTTTGACCGA 59.435 41.667 0.00 0.00 0.00 4.69
455 477 5.062934 CACTATTCACGCTATTTTGACCGAA 59.937 40.000 0.00 0.00 0.00 4.30
456 478 5.640357 ACTATTCACGCTATTTTGACCGAAA 59.360 36.000 0.00 0.00 0.00 3.46
457 479 4.815040 TTCACGCTATTTTGACCGAAAA 57.185 36.364 0.00 0.00 37.93 2.29
458 480 5.365403 TTCACGCTATTTTGACCGAAAAT 57.635 34.783 0.00 0.00 44.77 1.82
459 481 5.365403 TCACGCTATTTTGACCGAAAATT 57.635 34.783 0.00 0.00 40.73 1.82
460 482 5.764131 TCACGCTATTTTGACCGAAAATTT 58.236 33.333 0.00 0.00 40.73 1.82
461 483 5.627367 TCACGCTATTTTGACCGAAAATTTG 59.373 36.000 0.00 0.00 40.73 2.32
462 484 5.401079 CACGCTATTTTGACCGAAAATTTGT 59.599 36.000 0.00 0.00 40.73 2.83
463 485 5.627780 ACGCTATTTTGACCGAAAATTTGTC 59.372 36.000 0.00 0.00 40.73 3.18
464 486 5.856455 CGCTATTTTGACCGAAAATTTGTCT 59.144 36.000 8.19 0.00 40.73 3.41
465 487 6.362283 CGCTATTTTGACCGAAAATTTGTCTT 59.638 34.615 8.19 0.00 40.73 3.01
466 488 7.096230 CGCTATTTTGACCGAAAATTTGTCTTT 60.096 33.333 8.19 0.00 40.73 2.52
467 489 8.547894 GCTATTTTGACCGAAAATTTGTCTTTT 58.452 29.630 8.19 0.00 40.73 2.27
492 514 9.942850 TTTTTGAAAAGAAGTCAAAGAGGAATT 57.057 25.926 0.47 0.00 43.76 2.17
493 515 9.942850 TTTTGAAAAGAAGTCAAAGAGGAATTT 57.057 25.926 0.47 0.00 43.76 1.82
494 516 9.942850 TTTGAAAAGAAGTCAAAGAGGAATTTT 57.057 25.926 0.00 0.00 39.46 1.82
495 517 9.586435 TTGAAAAGAAGTCAAAGAGGAATTTTC 57.414 29.630 0.00 0.00 35.65 2.29
512 534 8.131455 GGAATTTTCCTTTTGTGAAACTCTTC 57.869 34.615 1.97 0.00 44.11 2.87
513 535 7.981789 GGAATTTTCCTTTTGTGAAACTCTTCT 59.018 33.333 1.97 0.00 44.11 2.85
514 536 8.932945 AATTTTCCTTTTGTGAAACTCTTCTC 57.067 30.769 0.00 0.00 38.04 2.87
515 537 7.461182 TTTTCCTTTTGTGAAACTCTTCTCA 57.539 32.000 0.00 0.00 38.04 3.27
516 538 6.436843 TTCCTTTTGTGAAACTCTTCTCAC 57.563 37.500 0.00 0.00 41.93 3.51
517 539 5.745227 TCCTTTTGTGAAACTCTTCTCACT 58.255 37.500 4.07 0.00 42.06 3.41
518 540 6.884832 TCCTTTTGTGAAACTCTTCTCACTA 58.115 36.000 4.07 0.00 42.06 2.74
519 541 6.986817 TCCTTTTGTGAAACTCTTCTCACTAG 59.013 38.462 4.07 0.00 42.06 2.57
520 542 6.763610 CCTTTTGTGAAACTCTTCTCACTAGT 59.236 38.462 0.00 0.00 42.06 2.57
521 543 7.926555 CCTTTTGTGAAACTCTTCTCACTAGTA 59.073 37.037 0.00 0.00 42.06 1.82
522 544 8.644318 TTTTGTGAAACTCTTCTCACTAGTAC 57.356 34.615 0.00 0.00 42.06 2.73
523 545 6.954487 TGTGAAACTCTTCTCACTAGTACA 57.046 37.500 0.00 0.00 42.06 2.90
524 546 7.342769 TGTGAAACTCTTCTCACTAGTACAA 57.657 36.000 0.00 0.00 42.06 2.41
525 547 7.952671 TGTGAAACTCTTCTCACTAGTACAAT 58.047 34.615 0.00 0.00 42.06 2.71
526 548 7.867909 TGTGAAACTCTTCTCACTAGTACAATG 59.132 37.037 0.00 0.00 42.06 2.82
527 549 8.082852 GTGAAACTCTTCTCACTAGTACAATGA 58.917 37.037 0.00 0.00 39.11 2.57
528 550 8.638873 TGAAACTCTTCTCACTAGTACAATGAA 58.361 33.333 0.00 0.00 32.33 2.57
529 551 9.477484 GAAACTCTTCTCACTAGTACAATGAAA 57.523 33.333 0.00 0.00 0.00 2.69
530 552 9.482627 AAACTCTTCTCACTAGTACAATGAAAG 57.517 33.333 0.00 3.51 0.00 2.62
531 553 7.607250 ACTCTTCTCACTAGTACAATGAAAGG 58.393 38.462 0.00 0.00 0.00 3.11
532 554 7.233757 ACTCTTCTCACTAGTACAATGAAAGGT 59.766 37.037 0.00 0.00 0.00 3.50
533 555 7.603651 TCTTCTCACTAGTACAATGAAAGGTC 58.396 38.462 0.00 0.00 0.00 3.85
534 556 6.911250 TCTCACTAGTACAATGAAAGGTCA 57.089 37.500 0.00 0.00 38.41 4.02
535 557 7.297936 TCTCACTAGTACAATGAAAGGTCAA 57.702 36.000 0.00 0.00 37.30 3.18
536 558 7.378966 TCTCACTAGTACAATGAAAGGTCAAG 58.621 38.462 0.00 0.00 37.30 3.02
537 559 7.015292 TCTCACTAGTACAATGAAAGGTCAAGT 59.985 37.037 0.00 0.00 37.30 3.16
538 560 7.506114 TCACTAGTACAATGAAAGGTCAAGTT 58.494 34.615 0.00 0.00 37.30 2.66
539 561 7.990886 TCACTAGTACAATGAAAGGTCAAGTTT 59.009 33.333 0.00 0.00 37.30 2.66
540 562 9.268268 CACTAGTACAATGAAAGGTCAAGTTTA 57.732 33.333 0.00 0.00 37.30 2.01
545 567 9.959749 GTACAATGAAAGGTCAAGTTTATTTCA 57.040 29.630 1.61 1.61 42.26 2.69
547 569 9.883142 ACAATGAAAGGTCAAGTTTATTTCAAA 57.117 25.926 3.13 0.00 41.62 2.69
941 975 2.730672 GACAAGCGTGGCTAGTGCG 61.731 63.158 4.26 0.00 38.25 5.34
975 1011 3.493503 CCGGTTCTCGCTATAAATTCACC 59.506 47.826 0.00 0.00 37.59 4.02
1034 1078 2.412112 GCTACGTAGCCCCACTCG 59.588 66.667 32.76 2.29 43.39 4.18
1192 1245 1.299976 GGGGTGGTGGTCTGATCAC 59.700 63.158 12.62 12.62 34.61 3.06
1196 1249 2.509336 GGTGGTCTGATCACCGCG 60.509 66.667 23.28 0.00 46.46 6.46
1198 1251 3.381983 TGGTCTGATCACCGCGCT 61.382 61.111 5.56 0.00 39.62 5.92
1199 1252 2.125512 GGTCTGATCACCGCGCTT 60.126 61.111 5.56 0.00 0.00 4.68
1200 1253 2.456119 GGTCTGATCACCGCGCTTG 61.456 63.158 5.56 2.10 0.00 4.01
1201 1254 1.738099 GTCTGATCACCGCGCTTGT 60.738 57.895 5.56 0.00 0.00 3.16
1202 1255 1.737735 TCTGATCACCGCGCTTGTG 60.738 57.895 17.78 17.78 35.01 3.33
1416 1535 1.576421 CACGCCCAAGAAGAAGCAC 59.424 57.895 0.00 0.00 0.00 4.40
1422 1541 1.630244 CCAAGAAGAAGCACGCGAGG 61.630 60.000 15.93 5.48 0.00 4.63
1487 3619 4.664677 GTCCACGGACGCTGCTGT 62.665 66.667 0.00 0.00 35.30 4.40
1490 3625 2.433145 CACGGACGCTGCTGTCAT 60.433 61.111 20.24 9.55 40.72 3.06
1499 3634 1.246056 GCTGCTGTCATGGCCAAGAA 61.246 55.000 13.20 0.00 0.00 2.52
1621 3767 3.563479 GGCCCCCAGAAAAGAATGTCTAA 60.563 47.826 0.00 0.00 0.00 2.10
1629 3775 7.121168 CCCAGAAAAGAATGTCTAATTACTGCA 59.879 37.037 0.00 0.00 0.00 4.41
1631 3795 9.713740 CAGAAAAGAATGTCTAATTACTGCATC 57.286 33.333 0.00 0.00 0.00 3.91
1637 3801 5.324784 TGTCTAATTACTGCATCTGTCGT 57.675 39.130 0.00 0.00 0.00 4.34
1638 3802 6.445357 TGTCTAATTACTGCATCTGTCGTA 57.555 37.500 0.00 0.00 0.00 3.43
1639 3803 6.263344 TGTCTAATTACTGCATCTGTCGTAC 58.737 40.000 0.00 0.00 0.00 3.67
1712 3891 4.792804 GCCTGGGCCTCAGCTCAC 62.793 72.222 14.01 2.27 44.04 3.51
1762 3950 2.969238 CCGATGGGATGCTGCGTC 60.969 66.667 13.40 13.40 34.06 5.19
1763 3951 2.969238 CGATGGGATGCTGCGTCC 60.969 66.667 28.76 28.76 38.72 4.79
1764 3952 2.507944 GATGGGATGCTGCGTCCT 59.492 61.111 33.17 19.42 39.36 3.85
1765 3953 1.890979 GATGGGATGCTGCGTCCTG 60.891 63.158 33.17 0.00 39.36 3.86
1766 3954 4.783621 TGGGATGCTGCGTCCTGC 62.784 66.667 33.17 21.39 46.70 4.85
1794 3982 1.207593 GCGTGTTCATCACCAGTGC 59.792 57.895 0.00 0.00 43.51 4.40
1814 4002 2.036346 GCTCATTTGCCCTTTCTGTTGT 59.964 45.455 0.00 0.00 0.00 3.32
1815 4003 3.858503 GCTCATTTGCCCTTTCTGTTGTC 60.859 47.826 0.00 0.00 0.00 3.18
1817 4005 3.318839 TCATTTGCCCTTTCTGTTGTCTG 59.681 43.478 0.00 0.00 0.00 3.51
1823 4040 3.745797 GCCCTTTCTGTTGTCTGTCTCTT 60.746 47.826 0.00 0.00 0.00 2.85
1833 4050 3.966154 TGTCTGTCTCTTCGAGTGTTTC 58.034 45.455 0.00 0.00 0.00 2.78
1834 4051 3.243434 TGTCTGTCTCTTCGAGTGTTTCC 60.243 47.826 0.00 0.00 0.00 3.13
1835 4052 2.956333 TCTGTCTCTTCGAGTGTTTCCA 59.044 45.455 0.00 0.00 0.00 3.53
1836 4053 3.053455 CTGTCTCTTCGAGTGTTTCCAC 58.947 50.000 0.00 0.00 42.17 4.02
1850 4071 0.534203 TTCCACCGTCTTGGCTTGTC 60.534 55.000 0.00 0.00 43.94 3.18
1855 4076 1.205064 CGTCTTGGCTTGTCGCAAG 59.795 57.895 13.18 13.18 41.67 4.01
1879 4106 5.341617 ACGATCAGTAGTAAAACTAGCTGC 58.658 41.667 0.00 0.00 33.68 5.25
1880 4107 4.438145 CGATCAGTAGTAAAACTAGCTGCG 59.562 45.833 0.00 0.00 33.68 5.18
1881 4108 4.778534 TCAGTAGTAAAACTAGCTGCGT 57.221 40.909 0.00 0.00 33.68 5.24
1882 4109 4.482386 TCAGTAGTAAAACTAGCTGCGTG 58.518 43.478 0.00 0.00 33.68 5.34
1885 4112 3.107642 AGTAAAACTAGCTGCGTGTGT 57.892 42.857 0.00 0.00 0.00 3.72
1891 4118 3.489180 ACTAGCTGCGTGTGTTAGTAG 57.511 47.619 0.00 0.00 0.00 2.57
1895 4123 1.324736 GCTGCGTGTGTTAGTAGCATC 59.675 52.381 0.93 0.00 43.85 3.91
1931 4221 5.362263 TCTTCTTTTGTGTAGTGTGGGTAC 58.638 41.667 0.00 0.00 0.00 3.34
1933 4223 3.132646 TCTTTTGTGTAGTGTGGGTACGT 59.867 43.478 0.00 0.00 0.00 3.57
1934 4224 4.340666 TCTTTTGTGTAGTGTGGGTACGTA 59.659 41.667 0.00 0.00 0.00 3.57
1937 4227 3.485394 TGTGTAGTGTGGGTACGTAAGA 58.515 45.455 0.00 0.00 43.62 2.10
1939 4229 4.340666 TGTGTAGTGTGGGTACGTAAGAAA 59.659 41.667 0.00 0.00 43.62 2.52
1940 4230 4.919754 GTGTAGTGTGGGTACGTAAGAAAG 59.080 45.833 0.00 0.00 43.62 2.62
1941 4231 4.826733 TGTAGTGTGGGTACGTAAGAAAGA 59.173 41.667 0.00 0.00 43.62 2.52
1942 4232 5.477984 TGTAGTGTGGGTACGTAAGAAAGAT 59.522 40.000 0.00 0.00 43.62 2.40
1943 4233 6.658816 TGTAGTGTGGGTACGTAAGAAAGATA 59.341 38.462 0.00 0.00 43.62 1.98
1944 4234 6.786967 AGTGTGGGTACGTAAGAAAGATAT 57.213 37.500 0.00 0.00 43.62 1.63
1963 4253 7.458409 AGATATTTGAGTGCAACATCTTGTT 57.542 32.000 0.00 0.00 42.08 2.83
1994 4284 3.618594 AGCAAGCACGTTGATATACAGTG 59.381 43.478 0.00 0.00 38.60 3.66
2016 4318 1.823610 TCTGTGATCTGTCAGCCTGAG 59.176 52.381 0.00 0.00 34.36 3.35
2073 4398 7.222872 AGTTTGTCATCAGAGATTCAGAAAGT 58.777 34.615 0.00 0.00 0.00 2.66
2074 4399 7.718753 AGTTTGTCATCAGAGATTCAGAAAGTT 59.281 33.333 0.00 0.00 0.00 2.66
2075 4400 8.348507 GTTTGTCATCAGAGATTCAGAAAGTTT 58.651 33.333 0.00 0.00 0.00 2.66
2076 4401 7.664082 TGTCATCAGAGATTCAGAAAGTTTC 57.336 36.000 7.57 7.57 0.00 2.78
2077 4402 7.219322 TGTCATCAGAGATTCAGAAAGTTTCA 58.781 34.615 17.65 0.00 0.00 2.69
2078 4403 7.387122 TGTCATCAGAGATTCAGAAAGTTTCAG 59.613 37.037 17.65 9.90 0.00 3.02
2079 4404 7.601886 GTCATCAGAGATTCAGAAAGTTTCAGA 59.398 37.037 17.65 12.16 0.00 3.27
2080 4405 8.152898 TCATCAGAGATTCAGAAAGTTTCAGAA 58.847 33.333 21.31 21.31 39.11 3.02
2081 4406 8.781196 CATCAGAGATTCAGAAAGTTTCAGAAA 58.219 33.333 22.44 11.96 38.43 2.52
2082 4407 8.375608 TCAGAGATTCAGAAAGTTTCAGAAAG 57.624 34.615 22.44 12.70 38.43 2.62
2099 4428 7.365497 TCAGAAAGATGGCAATAGATAGACA 57.635 36.000 0.00 0.00 0.00 3.41
2101 4430 8.435187 TCAGAAAGATGGCAATAGATAGACAAT 58.565 33.333 0.00 0.00 0.00 2.71
2102 4431 9.716531 CAGAAAGATGGCAATAGATAGACAATA 57.283 33.333 0.00 0.00 0.00 1.90
2118 4447 9.823098 GATAGACAATAATACTACACGTACAGG 57.177 37.037 0.00 0.00 0.00 4.00
2119 4448 7.870509 AGACAATAATACTACACGTACAGGA 57.129 36.000 0.00 0.00 0.00 3.86
2120 4449 8.461249 AGACAATAATACTACACGTACAGGAT 57.539 34.615 0.00 0.00 0.00 3.24
2121 4450 8.350722 AGACAATAATACTACACGTACAGGATG 58.649 37.037 0.00 0.00 46.00 3.51
2122 4451 8.229253 ACAATAATACTACACGTACAGGATGA 57.771 34.615 0.00 0.00 39.69 2.92
2123 4452 8.857098 ACAATAATACTACACGTACAGGATGAT 58.143 33.333 0.00 0.00 39.69 2.45
2124 4453 9.343103 CAATAATACTACACGTACAGGATGATC 57.657 37.037 0.00 0.00 39.69 2.92
2125 4454 3.965292 ACTACACGTACAGGATGATCG 57.035 47.619 0.00 0.00 39.69 3.69
2126 4455 3.276857 ACTACACGTACAGGATGATCGT 58.723 45.455 0.00 0.00 45.16 3.73
2127 4456 4.445453 ACTACACGTACAGGATGATCGTA 58.555 43.478 0.00 0.00 43.46 3.43
2128 4457 3.687572 ACACGTACAGGATGATCGTAC 57.312 47.619 0.00 0.00 43.46 3.67
2129 4458 3.011818 ACACGTACAGGATGATCGTACA 58.988 45.455 0.00 0.00 43.46 2.90
2130 4459 3.441222 ACACGTACAGGATGATCGTACAA 59.559 43.478 0.00 0.00 43.46 2.41
2131 4460 4.082625 ACACGTACAGGATGATCGTACAAA 60.083 41.667 0.00 0.00 43.46 2.83
2132 4461 4.499399 CACGTACAGGATGATCGTACAAAG 59.501 45.833 0.00 0.00 43.46 2.77
2133 4462 4.157289 ACGTACAGGATGATCGTACAAAGT 59.843 41.667 0.00 0.00 43.48 2.66
2134 4463 5.100259 CGTACAGGATGATCGTACAAAGTT 58.900 41.667 0.00 0.00 39.69 2.66
2135 4464 5.575606 CGTACAGGATGATCGTACAAAGTTT 59.424 40.000 0.00 0.00 39.69 2.66
2136 4465 6.090358 CGTACAGGATGATCGTACAAAGTTTT 59.910 38.462 0.00 0.00 39.69 2.43
2137 4466 7.274033 CGTACAGGATGATCGTACAAAGTTTTA 59.726 37.037 0.00 0.00 39.69 1.52
2138 4467 7.360575 ACAGGATGATCGTACAAAGTTTTAC 57.639 36.000 0.00 0.00 39.69 2.01
2139 4468 6.932400 ACAGGATGATCGTACAAAGTTTTACA 59.068 34.615 0.00 0.00 39.69 2.41
2140 4469 7.117812 ACAGGATGATCGTACAAAGTTTTACAG 59.882 37.037 0.00 0.00 39.69 2.74
2141 4470 6.594159 AGGATGATCGTACAAAGTTTTACAGG 59.406 38.462 0.00 0.00 0.00 4.00
2142 4471 6.592607 GGATGATCGTACAAAGTTTTACAGGA 59.407 38.462 0.00 0.00 0.00 3.86
2143 4472 7.280205 GGATGATCGTACAAAGTTTTACAGGAT 59.720 37.037 0.00 0.00 0.00 3.24
2144 4473 7.359262 TGATCGTACAAAGTTTTACAGGATG 57.641 36.000 0.00 0.00 46.00 3.51
2145 4474 7.156000 TGATCGTACAAAGTTTTACAGGATGA 58.844 34.615 0.00 0.00 39.69 2.92
2146 4475 6.774354 TCGTACAAAGTTTTACAGGATGAC 57.226 37.500 0.00 0.00 39.69 3.06
2147 4476 6.282167 TCGTACAAAGTTTTACAGGATGACA 58.718 36.000 0.00 0.00 39.69 3.58
2148 4477 6.762187 TCGTACAAAGTTTTACAGGATGACAA 59.238 34.615 0.00 0.00 39.69 3.18
2149 4478 6.849305 CGTACAAAGTTTTACAGGATGACAAC 59.151 38.462 0.00 0.00 39.69 3.32
2150 4479 5.816919 ACAAAGTTTTACAGGATGACAACG 58.183 37.500 0.00 0.00 39.69 4.10
2151 4480 5.355910 ACAAAGTTTTACAGGATGACAACGT 59.644 36.000 0.00 0.00 39.69 3.99
2152 4481 5.418310 AAGTTTTACAGGATGACAACGTG 57.582 39.130 4.10 4.10 39.69 4.49
2153 4482 3.813166 AGTTTTACAGGATGACAACGTGG 59.187 43.478 9.76 0.00 39.69 4.94
2154 4483 1.803334 TTACAGGATGACAACGTGGC 58.197 50.000 9.76 0.00 39.69 5.01
2155 4484 0.036765 TACAGGATGACAACGTGGCC 60.037 55.000 9.76 0.00 39.69 5.36
2156 4485 1.003355 CAGGATGACAACGTGGCCT 60.003 57.895 3.32 0.00 39.69 5.19
2157 4486 0.249120 CAGGATGACAACGTGGCCTA 59.751 55.000 3.32 0.00 39.69 3.93
2158 4487 0.981183 AGGATGACAACGTGGCCTAA 59.019 50.000 3.32 0.00 0.00 2.69
2159 4488 1.559682 AGGATGACAACGTGGCCTAAT 59.440 47.619 3.32 0.00 0.00 1.73
2160 4489 1.940613 GGATGACAACGTGGCCTAATC 59.059 52.381 3.32 0.00 0.00 1.75
2161 4490 2.420129 GGATGACAACGTGGCCTAATCT 60.420 50.000 3.32 0.00 0.00 2.40
2162 4491 3.181469 GGATGACAACGTGGCCTAATCTA 60.181 47.826 3.32 0.00 0.00 1.98
2163 4492 3.965379 TGACAACGTGGCCTAATCTAA 57.035 42.857 3.32 0.00 0.00 2.10
2164 4493 4.481368 TGACAACGTGGCCTAATCTAAT 57.519 40.909 3.32 0.00 0.00 1.73
2165 4494 4.839121 TGACAACGTGGCCTAATCTAATT 58.161 39.130 3.32 0.00 0.00 1.40
2166 4495 4.634004 TGACAACGTGGCCTAATCTAATTG 59.366 41.667 3.32 0.08 0.00 2.32
2167 4496 3.377172 ACAACGTGGCCTAATCTAATTGC 59.623 43.478 3.32 0.00 0.00 3.56
2168 4497 3.560636 ACGTGGCCTAATCTAATTGCT 57.439 42.857 3.32 0.00 0.00 3.91
2169 4498 3.467803 ACGTGGCCTAATCTAATTGCTC 58.532 45.455 3.32 0.00 0.00 4.26
2170 4499 2.808543 CGTGGCCTAATCTAATTGCTCC 59.191 50.000 3.32 0.00 0.00 4.70
2171 4500 3.149981 GTGGCCTAATCTAATTGCTCCC 58.850 50.000 3.32 0.00 0.00 4.30
2172 4501 2.108250 TGGCCTAATCTAATTGCTCCCC 59.892 50.000 3.32 0.00 0.00 4.81
2173 4502 2.555448 GGCCTAATCTAATTGCTCCCCC 60.555 54.545 0.00 0.00 0.00 5.40
2193 4522 2.583472 CTGATTTTCAGGGTGGGGC 58.417 57.895 0.00 0.00 40.71 5.80
2194 4523 0.972471 CTGATTTTCAGGGTGGGGCC 60.972 60.000 0.00 0.00 40.71 5.80
2195 4524 2.037208 ATTTTCAGGGTGGGGCCG 59.963 61.111 0.00 0.00 38.44 6.13
2196 4525 2.781431 GATTTTCAGGGTGGGGCCGT 62.781 60.000 0.00 0.00 38.44 5.68
2197 4526 2.781431 ATTTTCAGGGTGGGGCCGTC 62.781 60.000 0.00 0.00 38.44 4.79
2208 4537 3.326900 GGCCGTCCCCCTTAATCA 58.673 61.111 0.00 0.00 0.00 2.57
2209 4538 1.153025 GGCCGTCCCCCTTAATCAC 60.153 63.158 0.00 0.00 0.00 3.06
2210 4539 1.605453 GCCGTCCCCCTTAATCACA 59.395 57.895 0.00 0.00 0.00 3.58
2211 4540 0.182775 GCCGTCCCCCTTAATCACAT 59.817 55.000 0.00 0.00 0.00 3.21
2212 4541 1.409661 GCCGTCCCCCTTAATCACATT 60.410 52.381 0.00 0.00 0.00 2.71
2213 4542 2.572290 CCGTCCCCCTTAATCACATTC 58.428 52.381 0.00 0.00 0.00 2.67
2214 4543 2.572290 CGTCCCCCTTAATCACATTCC 58.428 52.381 0.00 0.00 0.00 3.01
2215 4544 2.092646 CGTCCCCCTTAATCACATTCCA 60.093 50.000 0.00 0.00 0.00 3.53
2216 4545 3.623703 CGTCCCCCTTAATCACATTCCAA 60.624 47.826 0.00 0.00 0.00 3.53
2217 4546 3.699538 GTCCCCCTTAATCACATTCCAAC 59.300 47.826 0.00 0.00 0.00 3.77
2218 4547 3.031013 CCCCCTTAATCACATTCCAACC 58.969 50.000 0.00 0.00 0.00 3.77
2219 4548 3.565449 CCCCCTTAATCACATTCCAACCA 60.565 47.826 0.00 0.00 0.00 3.67
2220 4549 4.093011 CCCCTTAATCACATTCCAACCAA 58.907 43.478 0.00 0.00 0.00 3.67
2221 4550 4.716287 CCCCTTAATCACATTCCAACCAAT 59.284 41.667 0.00 0.00 0.00 3.16
2222 4551 5.163416 CCCCTTAATCACATTCCAACCAATC 60.163 44.000 0.00 0.00 0.00 2.67
2223 4552 5.421693 CCCTTAATCACATTCCAACCAATCA 59.578 40.000 0.00 0.00 0.00 2.57
2224 4553 6.332630 CCTTAATCACATTCCAACCAATCAC 58.667 40.000 0.00 0.00 0.00 3.06
2225 4554 4.439305 AATCACATTCCAACCAATCACG 57.561 40.909 0.00 0.00 0.00 4.35
2226 4555 2.857483 TCACATTCCAACCAATCACGT 58.143 42.857 0.00 0.00 0.00 4.49
2227 4556 4.009370 TCACATTCCAACCAATCACGTA 57.991 40.909 0.00 0.00 0.00 3.57
2228 4557 3.749088 TCACATTCCAACCAATCACGTAC 59.251 43.478 0.00 0.00 0.00 3.67
2298 4632 2.438434 GGGCCCGTGAATCTGGTG 60.438 66.667 5.69 0.00 0.00 4.17
2313 4647 2.408835 GTGCCCGCATTGATTCGG 59.591 61.111 0.00 0.00 44.89 4.30
2326 4680 1.142060 TGATTCGGGCGGTTGGATAAT 59.858 47.619 0.00 0.00 0.00 1.28
2327 4681 2.369203 TGATTCGGGCGGTTGGATAATA 59.631 45.455 0.00 0.00 0.00 0.98
2328 4682 2.536761 TTCGGGCGGTTGGATAATAG 57.463 50.000 0.00 0.00 0.00 1.73
2363 4717 3.711842 TTTCTTCGCGCGTGCCTG 61.712 61.111 30.98 15.63 38.08 4.85
2389 4743 4.509915 TTTTGTTTCAACTCGACTCGAC 57.490 40.909 0.00 0.00 0.00 4.20
2409 4766 3.053828 GCCATGCCATGCCATACC 58.946 61.111 0.00 0.00 0.00 2.73
2410 4767 1.833492 GCCATGCCATGCCATACCA 60.833 57.895 0.00 0.00 0.00 3.25
2411 4768 1.189524 GCCATGCCATGCCATACCAT 61.190 55.000 0.00 0.00 0.00 3.55
2412 4769 1.891889 GCCATGCCATGCCATACCATA 60.892 52.381 0.00 0.00 0.00 2.74
2413 4770 1.820519 CCATGCCATGCCATACCATAC 59.179 52.381 0.00 0.00 0.00 2.39
2414 4771 2.516906 CATGCCATGCCATACCATACA 58.483 47.619 0.00 0.00 0.00 2.29
2415 4772 1.979855 TGCCATGCCATACCATACAC 58.020 50.000 0.00 0.00 0.00 2.90
2416 4773 1.494296 TGCCATGCCATACCATACACT 59.506 47.619 0.00 0.00 0.00 3.55
2417 4774 1.881973 GCCATGCCATACCATACACTG 59.118 52.381 0.00 0.00 0.00 3.66
2418 4775 2.487086 GCCATGCCATACCATACACTGA 60.487 50.000 0.00 0.00 0.00 3.41
2419 4776 3.811810 GCCATGCCATACCATACACTGAT 60.812 47.826 0.00 0.00 0.00 2.90
2420 4777 3.754850 CCATGCCATACCATACACTGATG 59.245 47.826 0.00 0.00 0.00 3.07
2421 4778 2.849942 TGCCATACCATACACTGATGC 58.150 47.619 0.00 0.00 0.00 3.91
2422 4779 2.172293 TGCCATACCATACACTGATGCA 59.828 45.455 0.00 0.00 0.00 3.96
2425 4782 3.561310 CCATACCATACACTGATGCACAC 59.439 47.826 0.00 0.00 0.00 3.82
2445 4802 4.969196 ACTGTCGCAGCCGTGTGG 62.969 66.667 6.74 0.00 34.37 4.17
2456 4813 3.315765 CCGTGTGGCAAGGTAGAAA 57.684 52.632 0.00 0.00 0.00 2.52
2466 4894 5.243954 GTGGCAAGGTAGAAAAGAGGAAAAT 59.756 40.000 0.00 0.00 0.00 1.82
2472 4900 5.823045 AGGTAGAAAAGAGGAAAATATGGCG 59.177 40.000 0.00 0.00 0.00 5.69
2478 4906 2.167693 AGAGGAAAATATGGCGACGTGA 59.832 45.455 0.00 0.00 0.00 4.35
2479 4907 3.131396 GAGGAAAATATGGCGACGTGAT 58.869 45.455 0.00 0.00 0.00 3.06
2486 4914 4.505217 GGCGACGTGATTGCAGCG 62.505 66.667 0.00 0.00 39.86 5.18
2490 4918 3.027170 GACGTGATTGCAGCGGTGG 62.027 63.158 17.54 0.00 0.00 4.61
2491 4919 3.049674 CGTGATTGCAGCGGTGGT 61.050 61.111 17.54 0.00 0.00 4.16
2492 4920 1.739929 CGTGATTGCAGCGGTGGTA 60.740 57.895 17.54 0.00 0.00 3.25
2504 4932 1.405121 GCGGTGGTAACTTGGACCTAG 60.405 57.143 0.93 0.93 37.88 3.02
2505 4933 1.405121 CGGTGGTAACTTGGACCTAGC 60.405 57.143 2.53 0.00 37.88 3.42
2506 4934 1.907255 GGTGGTAACTTGGACCTAGCT 59.093 52.381 2.53 0.00 37.88 3.32
2507 4935 3.102204 GGTGGTAACTTGGACCTAGCTA 58.898 50.000 2.53 0.00 37.88 3.32
2508 4936 3.118847 GGTGGTAACTTGGACCTAGCTAC 60.119 52.174 7.69 7.69 37.88 3.58
2509 4937 3.768215 GTGGTAACTTGGACCTAGCTACT 59.232 47.826 13.78 0.00 37.88 2.57
2510 4938 3.767673 TGGTAACTTGGACCTAGCTACTG 59.232 47.826 13.78 0.00 37.88 2.74
2511 4939 3.430513 GGTAACTTGGACCTAGCTACTGC 60.431 52.174 13.78 0.00 35.16 4.40
2512 4940 1.196012 ACTTGGACCTAGCTACTGCC 58.804 55.000 2.53 0.00 40.80 4.85
2513 4941 0.466124 CTTGGACCTAGCTACTGCCC 59.534 60.000 0.00 0.00 40.80 5.36
2515 4943 1.382695 GGACCTAGCTACTGCCCCA 60.383 63.158 0.00 0.00 40.80 4.96
2517 4945 2.034048 GACCTAGCTACTGCCCCAGC 62.034 65.000 0.00 0.00 40.80 4.85
2519 4947 1.144936 CTAGCTACTGCCCCAGCAC 59.855 63.158 0.00 0.00 46.52 4.40
2521 4949 0.982852 TAGCTACTGCCCCAGCACAT 60.983 55.000 0.00 0.00 46.52 3.21
2522 4950 2.117156 GCTACTGCCCCAGCACATG 61.117 63.158 0.00 0.00 46.52 3.21
2523 4951 2.045045 TACTGCCCCAGCACATGC 60.045 61.111 0.00 0.00 46.52 4.06
2536 4987 1.335324 GCACATGCAACAACACCTCTC 60.335 52.381 0.00 0.00 41.59 3.20
2539 4990 1.462283 CATGCAACAACACCTCTCTCG 59.538 52.381 0.00 0.00 0.00 4.04
2540 4991 0.464036 TGCAACAACACCTCTCTCGT 59.536 50.000 0.00 0.00 0.00 4.18
2541 4992 1.140816 GCAACAACACCTCTCTCGTC 58.859 55.000 0.00 0.00 0.00 4.20
2542 4993 1.409412 CAACAACACCTCTCTCGTCG 58.591 55.000 0.00 0.00 0.00 5.12
2601 6508 4.081586 ACGAGTAGTGGAATTTCCCTTCTC 60.082 45.833 19.39 19.39 35.03 2.87
2603 6510 3.838903 AGTAGTGGAATTTCCCTTCTCGT 59.161 43.478 12.90 0.00 35.03 4.18
2604 6511 3.336138 AGTGGAATTTCCCTTCTCGTC 57.664 47.619 12.90 0.00 35.03 4.20
2605 6512 2.907042 AGTGGAATTTCCCTTCTCGTCT 59.093 45.455 12.90 0.00 35.03 4.18
2606 6513 3.055747 AGTGGAATTTCCCTTCTCGTCTC 60.056 47.826 12.90 0.00 35.03 3.36
2607 6514 2.094182 TGGAATTTCCCTTCTCGTCTCG 60.094 50.000 12.90 0.00 35.03 4.04
2608 6515 2.094130 GGAATTTCCCTTCTCGTCTCGT 60.094 50.000 3.89 0.00 0.00 4.18
2648 6555 2.104170 TCAAACGGGGCTTCAGTTTTT 58.896 42.857 6.25 0.00 40.76 1.94
2665 6572 3.372660 TTTTACGGGGAATGTTGTTGC 57.627 42.857 0.00 0.00 0.00 4.17
2666 6573 1.249407 TTACGGGGAATGTTGTTGCC 58.751 50.000 0.00 0.00 0.00 4.52
2667 6574 0.609681 TACGGGGAATGTTGTTGCCC 60.610 55.000 7.24 7.24 45.48 5.36
2668 6575 1.606313 CGGGGAATGTTGTTGCCCT 60.606 57.895 14.23 0.00 46.59 5.19
2669 6576 1.595093 CGGGGAATGTTGTTGCCCTC 61.595 60.000 14.23 0.00 46.59 4.30
2692 6599 0.679640 TCCGGGTTTCATGCATGTCC 60.680 55.000 25.43 22.79 0.00 4.02
2700 6607 4.274459 GGTTTCATGCATGTCCTATCAGAC 59.726 45.833 25.43 10.00 37.28 3.51
2720 6627 0.321653 AAGCATTCCGAGGACACACC 60.322 55.000 0.00 0.00 39.35 4.16
2733 6645 4.988598 ACACCGCCCACGCTTCAG 62.989 66.667 0.00 0.00 38.22 3.02
2751 6663 4.748679 CGCTGCTTCCAACTGCGC 62.749 66.667 0.00 0.00 45.91 6.09
2760 6672 0.179059 TCCAACTGCGCTTCTGAACA 60.179 50.000 9.73 0.00 0.00 3.18
2762 6674 1.597937 CCAACTGCGCTTCTGAACAAC 60.598 52.381 9.73 0.00 0.00 3.32
2790 6703 0.534203 TGTTCACCGCTTCACCTTCC 60.534 55.000 0.00 0.00 0.00 3.46
2796 6709 1.587054 CGCTTCACCTTCCTCGACT 59.413 57.895 0.00 0.00 0.00 4.18
2810 6723 3.135895 TCCTCGACTTGACCTTTCCTTTT 59.864 43.478 0.00 0.00 0.00 2.27
2811 6724 4.345837 TCCTCGACTTGACCTTTCCTTTTA 59.654 41.667 0.00 0.00 0.00 1.52
2812 6725 5.012768 TCCTCGACTTGACCTTTCCTTTTAT 59.987 40.000 0.00 0.00 0.00 1.40
2813 6726 5.351740 CCTCGACTTGACCTTTCCTTTTATC 59.648 44.000 0.00 0.00 0.00 1.75
2814 6727 5.860611 TCGACTTGACCTTTCCTTTTATCA 58.139 37.500 0.00 0.00 0.00 2.15
2816 6729 5.701290 CGACTTGACCTTTCCTTTTATCACT 59.299 40.000 0.00 0.00 0.00 3.41
2817 6730 6.872020 CGACTTGACCTTTCCTTTTATCACTA 59.128 38.462 0.00 0.00 0.00 2.74
2819 6732 7.746703 ACTTGACCTTTCCTTTTATCACTAGT 58.253 34.615 0.00 0.00 0.00 2.57
2839 6752 1.157870 AAACCTTGCAGTCGTGTCGG 61.158 55.000 0.00 0.00 0.00 4.79
2855 6768 2.818841 GGCGTGTTTTTGCCCCTT 59.181 55.556 0.00 0.00 45.73 3.95
2856 6769 1.594021 GGCGTGTTTTTGCCCCTTG 60.594 57.895 0.00 0.00 45.73 3.61
2857 6770 1.439644 GCGTGTTTTTGCCCCTTGA 59.560 52.632 0.00 0.00 0.00 3.02
2859 6772 1.271102 GCGTGTTTTTGCCCCTTGATA 59.729 47.619 0.00 0.00 0.00 2.15
2863 6776 4.388469 CGTGTTTTTGCCCCTTGATATTTG 59.612 41.667 0.00 0.00 0.00 2.32
2864 6777 5.304778 GTGTTTTTGCCCCTTGATATTTGT 58.695 37.500 0.00 0.00 0.00 2.83
2866 6779 6.262049 GTGTTTTTGCCCCTTGATATTTGTTT 59.738 34.615 0.00 0.00 0.00 2.83
2867 6780 7.442666 GTGTTTTTGCCCCTTGATATTTGTTTA 59.557 33.333 0.00 0.00 0.00 2.01
2868 6781 8.160106 TGTTTTTGCCCCTTGATATTTGTTTAT 58.840 29.630 0.00 0.00 0.00 1.40
2869 6782 8.664798 GTTTTTGCCCCTTGATATTTGTTTATC 58.335 33.333 0.00 0.00 0.00 1.75
2870 6783 6.478512 TTGCCCCTTGATATTTGTTTATCC 57.521 37.500 0.00 0.00 0.00 2.59
2871 6784 5.523588 TGCCCCTTGATATTTGTTTATCCA 58.476 37.500 0.00 0.00 0.00 3.41
2872 6785 5.598005 TGCCCCTTGATATTTGTTTATCCAG 59.402 40.000 0.00 0.00 0.00 3.86
2873 6786 5.509670 GCCCCTTGATATTTGTTTATCCAGC 60.510 44.000 0.00 0.00 0.00 4.85
2874 6787 5.011023 CCCCTTGATATTTGTTTATCCAGCC 59.989 44.000 0.00 0.00 0.00 4.85
2875 6788 5.598005 CCCTTGATATTTGTTTATCCAGCCA 59.402 40.000 0.00 0.00 0.00 4.75
2882 6795 8.904099 ATATTTGTTTATCCAGCCACTAGTAC 57.096 34.615 0.00 0.00 0.00 2.73
2907 6820 5.220989 CCAGATGAAATGATCGATTTGCAGT 60.221 40.000 0.00 0.00 34.18 4.40
2910 6823 6.988580 AGATGAAATGATCGATTTGCAGTAGA 59.011 34.615 0.00 0.00 34.18 2.59
2916 6829 7.798596 ATGATCGATTTGCAGTAGATTTCTT 57.201 32.000 0.00 0.00 0.00 2.52
2921 6834 6.313905 TCGATTTGCAGTAGATTTCTTTCCTC 59.686 38.462 0.00 0.00 0.00 3.71
2925 6838 5.869579 TGCAGTAGATTTCTTTCCTCAGTT 58.130 37.500 0.00 0.00 0.00 3.16
2941 6854 8.579850 TTCCTCAGTTGCATTTATTATCACTT 57.420 30.769 0.00 0.00 0.00 3.16
2942 6855 9.679661 TTCCTCAGTTGCATTTATTATCACTTA 57.320 29.630 0.00 0.00 0.00 2.24
2943 6856 9.330063 TCCTCAGTTGCATTTATTATCACTTAG 57.670 33.333 0.00 0.00 0.00 2.18
2944 6857 9.330063 CCTCAGTTGCATTTATTATCACTTAGA 57.670 33.333 0.00 0.00 0.00 2.10
2946 6859 8.830580 TCAGTTGCATTTATTATCACTTAGAGC 58.169 33.333 0.00 0.00 0.00 4.09
2947 6860 8.072567 CAGTTGCATTTATTATCACTTAGAGCC 58.927 37.037 0.00 0.00 0.00 4.70
2948 6861 7.995488 AGTTGCATTTATTATCACTTAGAGCCT 59.005 33.333 0.00 0.00 0.00 4.58
2949 6862 7.969536 TGCATTTATTATCACTTAGAGCCTC 57.030 36.000 0.00 0.00 0.00 4.70
2950 6863 7.739825 TGCATTTATTATCACTTAGAGCCTCT 58.260 34.615 0.00 0.00 0.00 3.69
2951 6864 8.213679 TGCATTTATTATCACTTAGAGCCTCTT 58.786 33.333 0.00 0.00 0.00 2.85
2952 6865 9.061435 GCATTTATTATCACTTAGAGCCTCTTT 57.939 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.579084 GCGCCCGTGTGTTATTTCCA 61.579 55.000 0.00 0.00 0.00 3.53
221 243 2.498167 GATATTTCCACGCTGCCTCAT 58.502 47.619 0.00 0.00 0.00 2.90
227 249 2.223572 GCCAAAGGATATTTCCACGCTG 60.224 50.000 4.92 0.00 45.30 5.18
233 255 5.136105 ACATGAGAGCCAAAGGATATTTCC 58.864 41.667 0.00 0.00 42.96 3.13
234 256 7.992754 ATACATGAGAGCCAAAGGATATTTC 57.007 36.000 0.00 0.00 0.00 2.17
238 260 8.531982 GTGTATATACATGAGAGCCAAAGGATA 58.468 37.037 18.27 0.00 38.63 2.59
240 262 6.239600 GGTGTATATACATGAGAGCCAAAGGA 60.240 42.308 18.27 0.00 38.63 3.36
241 263 5.934625 GGTGTATATACATGAGAGCCAAAGG 59.065 44.000 18.27 0.00 38.63 3.11
243 265 6.747414 AGGTGTATATACATGAGAGCCAAA 57.253 37.500 18.27 0.00 38.63 3.28
245 267 9.715119 ATATAAGGTGTATATACATGAGAGCCA 57.285 33.333 18.27 0.62 38.63 4.75
324 346 9.695526 TGCGTAAGTAAGTCAAGTTTAATCTAA 57.304 29.630 0.00 0.00 41.68 2.10
325 347 9.865321 ATGCGTAAGTAAGTCAAGTTTAATCTA 57.135 29.630 0.00 0.00 41.68 1.98
326 348 8.773404 ATGCGTAAGTAAGTCAAGTTTAATCT 57.227 30.769 0.00 0.00 41.68 2.40
329 351 9.480053 ACTAATGCGTAAGTAAGTCAAGTTTAA 57.520 29.630 0.00 0.00 41.68 1.52
331 353 7.958053 ACTAATGCGTAAGTAAGTCAAGTTT 57.042 32.000 0.00 0.00 41.68 2.66
372 394 5.158494 GTGAAGTCAACGTTGGTTCTTTTT 58.842 37.500 28.81 15.75 32.98 1.94
373 395 4.216687 TGTGAAGTCAACGTTGGTTCTTTT 59.783 37.500 28.81 16.74 32.98 2.27
374 396 3.754323 TGTGAAGTCAACGTTGGTTCTTT 59.246 39.130 28.81 17.99 32.98 2.52
375 397 3.340034 TGTGAAGTCAACGTTGGTTCTT 58.660 40.909 28.81 26.11 32.98 2.52
376 398 2.936498 CTGTGAAGTCAACGTTGGTTCT 59.064 45.455 28.81 21.68 32.98 3.01
377 399 2.538939 GCTGTGAAGTCAACGTTGGTTC 60.539 50.000 27.02 26.01 32.98 3.62
378 400 1.400494 GCTGTGAAGTCAACGTTGGTT 59.600 47.619 27.02 20.09 36.63 3.67
379 401 1.014352 GCTGTGAAGTCAACGTTGGT 58.986 50.000 27.02 12.89 0.00 3.67
380 402 0.042188 CGCTGTGAAGTCAACGTTGG 60.042 55.000 27.02 10.17 0.00 3.77
381 403 0.927537 TCGCTGTGAAGTCAACGTTG 59.072 50.000 22.35 22.35 0.00 4.10
382 404 1.647346 TTCGCTGTGAAGTCAACGTT 58.353 45.000 0.00 0.00 31.44 3.99
383 405 1.647346 TTTCGCTGTGAAGTCAACGT 58.353 45.000 3.65 0.00 37.99 3.99
384 406 2.730183 TTTTCGCTGTGAAGTCAACG 57.270 45.000 3.65 0.00 37.99 4.10
385 407 4.273005 TCTTTTTCGCTGTGAAGTCAAC 57.727 40.909 3.65 0.00 37.99 3.18
386 408 6.612247 TTATCTTTTTCGCTGTGAAGTCAA 57.388 33.333 3.65 0.00 37.99 3.18
387 409 6.612247 TTTATCTTTTTCGCTGTGAAGTCA 57.388 33.333 3.65 0.00 37.99 3.41
388 410 8.507470 AATTTTATCTTTTTCGCTGTGAAGTC 57.493 30.769 3.65 0.00 37.99 3.01
389 411 8.871686 AAATTTTATCTTTTTCGCTGTGAAGT 57.128 26.923 3.65 0.00 37.99 3.01
415 437 9.424319 CGTGAATAGTGACCTATAATAGCAAAT 57.576 33.333 0.00 0.00 32.57 2.32
416 438 7.384115 GCGTGAATAGTGACCTATAATAGCAAA 59.616 37.037 0.00 0.00 32.57 3.68
417 439 6.866770 GCGTGAATAGTGACCTATAATAGCAA 59.133 38.462 0.00 0.00 32.57 3.91
418 440 6.208797 AGCGTGAATAGTGACCTATAATAGCA 59.791 38.462 0.00 0.00 32.57 3.49
419 441 6.622549 AGCGTGAATAGTGACCTATAATAGC 58.377 40.000 0.00 0.00 32.57 2.97
422 444 9.998106 AAAATAGCGTGAATAGTGACCTATAAT 57.002 29.630 0.00 0.00 32.57 1.28
423 445 9.256477 CAAAATAGCGTGAATAGTGACCTATAA 57.744 33.333 0.00 0.00 32.57 0.98
424 446 8.635328 TCAAAATAGCGTGAATAGTGACCTATA 58.365 33.333 0.00 0.00 32.57 1.31
425 447 7.438459 GTCAAAATAGCGTGAATAGTGACCTAT 59.562 37.037 0.00 0.00 35.33 2.57
426 448 6.755141 GTCAAAATAGCGTGAATAGTGACCTA 59.245 38.462 0.00 0.00 0.00 3.08
427 449 5.581085 GTCAAAATAGCGTGAATAGTGACCT 59.419 40.000 0.00 0.00 0.00 3.85
428 450 5.220605 GGTCAAAATAGCGTGAATAGTGACC 60.221 44.000 3.47 3.47 43.97 4.02
429 451 5.500290 CGGTCAAAATAGCGTGAATAGTGAC 60.500 44.000 0.00 0.00 35.72 3.67
430 452 4.565166 CGGTCAAAATAGCGTGAATAGTGA 59.435 41.667 0.00 0.00 35.72 3.41
431 453 4.565166 TCGGTCAAAATAGCGTGAATAGTG 59.435 41.667 0.00 0.00 41.00 2.74
432 454 4.751060 TCGGTCAAAATAGCGTGAATAGT 58.249 39.130 0.00 0.00 41.00 2.12
433 455 5.712217 TTCGGTCAAAATAGCGTGAATAG 57.288 39.130 0.00 0.00 41.00 1.73
434 456 6.483385 TTTTCGGTCAAAATAGCGTGAATA 57.517 33.333 0.00 0.00 41.00 1.75
435 457 5.365403 TTTTCGGTCAAAATAGCGTGAAT 57.635 34.783 0.00 0.00 41.00 2.57
436 458 4.815040 TTTTCGGTCAAAATAGCGTGAA 57.185 36.364 0.00 0.00 41.00 3.18
437 459 5.365403 AATTTTCGGTCAAAATAGCGTGA 57.635 34.783 0.00 0.00 42.86 4.35
438 460 5.401079 ACAAATTTTCGGTCAAAATAGCGTG 59.599 36.000 0.00 0.00 42.86 5.34
439 461 5.525199 ACAAATTTTCGGTCAAAATAGCGT 58.475 33.333 0.00 0.00 42.86 5.07
440 462 5.856455 AGACAAATTTTCGGTCAAAATAGCG 59.144 36.000 9.15 0.00 42.86 4.26
441 463 7.637709 AAGACAAATTTTCGGTCAAAATAGC 57.362 32.000 9.15 0.00 42.86 2.97
466 488 9.942850 AATTCCTCTTTGACTTCTTTTCAAAAA 57.057 25.926 0.00 0.00 41.32 1.94
467 489 9.942850 AAATTCCTCTTTGACTTCTTTTCAAAA 57.057 25.926 0.00 0.00 41.32 2.44
468 490 9.942850 AAAATTCCTCTTTGACTTCTTTTCAAA 57.057 25.926 0.00 0.00 39.99 2.69
469 491 9.586435 GAAAATTCCTCTTTGACTTCTTTTCAA 57.414 29.630 0.00 0.00 32.88 2.69
470 492 8.197439 GGAAAATTCCTCTTTGACTTCTTTTCA 58.803 33.333 4.91 0.00 44.11 2.69
471 493 8.581057 GGAAAATTCCTCTTTGACTTCTTTTC 57.419 34.615 4.91 0.00 44.11 2.29
486 508 7.981789 GAAGAGTTTCACAAAAGGAAAATTCCT 59.018 33.333 8.93 8.93 44.86 3.36
487 509 7.981789 AGAAGAGTTTCACAAAAGGAAAATTCC 59.018 33.333 3.93 3.93 40.52 3.01
488 510 8.932945 AGAAGAGTTTCACAAAAGGAAAATTC 57.067 30.769 0.00 0.00 36.14 2.17
489 511 8.531146 TGAGAAGAGTTTCACAAAAGGAAAATT 58.469 29.630 0.00 0.00 36.14 1.82
490 512 7.976175 GTGAGAAGAGTTTCACAAAAGGAAAAT 59.024 33.333 0.12 0.00 42.47 1.82
491 513 7.176690 AGTGAGAAGAGTTTCACAAAAGGAAAA 59.823 33.333 7.29 0.00 44.72 2.29
492 514 6.659242 AGTGAGAAGAGTTTCACAAAAGGAAA 59.341 34.615 7.29 0.00 44.72 3.13
493 515 6.180472 AGTGAGAAGAGTTTCACAAAAGGAA 58.820 36.000 7.29 0.00 44.72 3.36
494 516 5.745227 AGTGAGAAGAGTTTCACAAAAGGA 58.255 37.500 7.29 0.00 44.72 3.36
495 517 6.763610 ACTAGTGAGAAGAGTTTCACAAAAGG 59.236 38.462 0.00 0.00 44.72 3.11
496 518 7.778470 ACTAGTGAGAAGAGTTTCACAAAAG 57.222 36.000 0.00 4.45 44.72 2.27
497 519 8.255206 TGTACTAGTGAGAAGAGTTTCACAAAA 58.745 33.333 5.39 0.00 44.72 2.44
498 520 7.778083 TGTACTAGTGAGAAGAGTTTCACAAA 58.222 34.615 5.39 0.00 44.72 2.83
499 521 7.342769 TGTACTAGTGAGAAGAGTTTCACAA 57.657 36.000 5.39 0.00 44.72 3.33
500 522 6.954487 TGTACTAGTGAGAAGAGTTTCACA 57.046 37.500 5.39 0.00 44.72 3.58
501 523 8.082852 TCATTGTACTAGTGAGAAGAGTTTCAC 58.917 37.037 5.39 0.00 43.08 3.18
502 524 8.178313 TCATTGTACTAGTGAGAAGAGTTTCA 57.822 34.615 5.39 0.00 35.70 2.69
503 525 9.477484 TTTCATTGTACTAGTGAGAAGAGTTTC 57.523 33.333 5.39 0.00 0.00 2.78
504 526 9.482627 CTTTCATTGTACTAGTGAGAAGAGTTT 57.517 33.333 5.39 0.00 0.00 2.66
505 527 8.091449 CCTTTCATTGTACTAGTGAGAAGAGTT 58.909 37.037 5.39 0.00 0.00 3.01
506 528 7.233757 ACCTTTCATTGTACTAGTGAGAAGAGT 59.766 37.037 5.39 1.94 0.00 3.24
507 529 7.607250 ACCTTTCATTGTACTAGTGAGAAGAG 58.393 38.462 5.39 3.79 0.00 2.85
508 530 7.232737 TGACCTTTCATTGTACTAGTGAGAAGA 59.767 37.037 5.39 0.00 0.00 2.87
509 531 7.378966 TGACCTTTCATTGTACTAGTGAGAAG 58.621 38.462 5.39 0.62 0.00 2.85
510 532 7.297936 TGACCTTTCATTGTACTAGTGAGAA 57.702 36.000 5.39 0.00 0.00 2.87
511 533 6.911250 TGACCTTTCATTGTACTAGTGAGA 57.089 37.500 5.39 0.00 0.00 3.27
512 534 7.155328 ACTTGACCTTTCATTGTACTAGTGAG 58.845 38.462 5.39 0.00 0.00 3.51
513 535 7.062749 ACTTGACCTTTCATTGTACTAGTGA 57.937 36.000 5.39 0.00 0.00 3.41
514 536 7.730364 AACTTGACCTTTCATTGTACTAGTG 57.270 36.000 5.39 0.00 0.00 2.74
519 541 9.959749 TGAAATAAACTTGACCTTTCATTGTAC 57.040 29.630 0.00 0.00 32.52 2.90
521 543 9.883142 TTTGAAATAAACTTGACCTTTCATTGT 57.117 25.926 0.00 0.00 36.17 2.71
887 909 1.595357 CCTCCGGTGTGTAGGGTTC 59.405 63.158 0.00 0.00 0.00 3.62
913 940 1.660575 ACGCTTGTCAGAACGGACG 60.661 57.895 0.00 0.00 40.72 4.79
915 942 1.300620 CCACGCTTGTCAGAACGGA 60.301 57.895 0.00 0.00 0.00 4.69
991 1027 1.065854 AGAACGGAATGGAAGCTCCTG 60.066 52.381 0.00 0.00 37.46 3.86
1192 1245 2.972505 ACAAGTCCACAAGCGCGG 60.973 61.111 8.83 0.00 0.00 6.46
1193 1246 2.249309 CACAAGTCCACAAGCGCG 59.751 61.111 0.00 0.00 0.00 6.86
1195 1248 0.738389 AAACCACAAGTCCACAAGCG 59.262 50.000 0.00 0.00 0.00 4.68
1196 1249 2.024414 AGAAACCACAAGTCCACAAGC 58.976 47.619 0.00 0.00 0.00 4.01
1198 1251 5.690865 AGATAAGAAACCACAAGTCCACAA 58.309 37.500 0.00 0.00 0.00 3.33
1199 1252 5.071788 AGAGATAAGAAACCACAAGTCCACA 59.928 40.000 0.00 0.00 0.00 4.17
1200 1253 5.552178 AGAGATAAGAAACCACAAGTCCAC 58.448 41.667 0.00 0.00 0.00 4.02
1201 1254 5.566826 CGAGAGATAAGAAACCACAAGTCCA 60.567 44.000 0.00 0.00 0.00 4.02
1202 1255 4.865365 CGAGAGATAAGAAACCACAAGTCC 59.135 45.833 0.00 0.00 0.00 3.85
1393 1506 0.035439 TTCTTCTTGGGCGTGGGATC 60.035 55.000 0.00 0.00 0.00 3.36
1480 2401 1.246056 TTCTTGGCCATGACAGCAGC 61.246 55.000 20.33 0.00 0.00 5.25
1481 2402 0.524862 GTTCTTGGCCATGACAGCAG 59.475 55.000 20.33 6.42 0.00 4.24
1482 2403 1.236616 CGTTCTTGGCCATGACAGCA 61.237 55.000 20.33 3.78 0.00 4.41
1581 3716 1.176527 CCGTACGTACCTTCCTTGGA 58.823 55.000 19.67 0.00 0.00 3.53
1621 3767 2.426024 ACCGTACGACAGATGCAGTAAT 59.574 45.455 18.76 0.00 0.00 1.89
1629 3775 0.172803 GCTCCAACCGTACGACAGAT 59.827 55.000 18.76 0.00 0.00 2.90
1631 3795 0.732880 CAGCTCCAACCGTACGACAG 60.733 60.000 18.76 2.16 0.00 3.51
1766 3954 3.414700 GAACACGCACGCAGGAGG 61.415 66.667 0.00 0.00 0.00 4.30
1767 3955 1.959899 GATGAACACGCACGCAGGAG 61.960 60.000 0.00 0.00 0.00 3.69
1794 3982 3.571401 AGACAACAGAAAGGGCAAATGAG 59.429 43.478 0.00 0.00 0.00 2.90
1833 4050 2.317609 CGACAAGCCAAGACGGTGG 61.318 63.158 0.00 0.00 42.05 4.61
1834 4051 2.954753 GCGACAAGCCAAGACGGTG 61.955 63.158 0.00 0.00 40.81 4.94
1835 4052 2.665185 GCGACAAGCCAAGACGGT 60.665 61.111 0.00 0.00 40.81 4.83
1850 4071 4.857588 AGTTTTACTACTGATCGTCTTGCG 59.142 41.667 0.00 0.00 43.01 4.85
1855 4076 5.456173 GCAGCTAGTTTTACTACTGATCGTC 59.544 44.000 14.76 0.00 34.61 4.20
1857 4078 4.438145 CGCAGCTAGTTTTACTACTGATCG 59.562 45.833 14.76 9.24 34.61 3.69
1859 4080 5.103000 CACGCAGCTAGTTTTACTACTGAT 58.897 41.667 14.76 5.23 34.61 2.90
1861 4082 4.090066 CACACGCAGCTAGTTTTACTACTG 59.910 45.833 0.00 0.00 35.20 2.74
1864 4091 4.247267 ACACACGCAGCTAGTTTTACTA 57.753 40.909 0.00 0.00 0.00 1.82
1879 4106 3.181509 ACTCGAGATGCTACTAACACACG 60.182 47.826 21.68 0.00 0.00 4.49
1880 4107 4.358494 ACTCGAGATGCTACTAACACAC 57.642 45.455 21.68 0.00 0.00 3.82
1881 4108 5.183331 AGAAACTCGAGATGCTACTAACACA 59.817 40.000 21.68 0.00 0.00 3.72
1882 4109 5.642686 AGAAACTCGAGATGCTACTAACAC 58.357 41.667 21.68 0.00 0.00 3.32
1885 4112 7.249186 GAGTAGAAACTCGAGATGCTACTAA 57.751 40.000 32.33 5.22 42.66 2.24
1922 4212 7.546667 TCAAATATCTTTCTTACGTACCCACAC 59.453 37.037 0.00 0.00 0.00 3.82
1931 4221 7.518161 TGTTGCACTCAAATATCTTTCTTACG 58.482 34.615 0.00 0.00 33.37 3.18
1933 4223 9.453572 AGATGTTGCACTCAAATATCTTTCTTA 57.546 29.630 0.00 0.00 36.12 2.10
1934 4224 8.345724 AGATGTTGCACTCAAATATCTTTCTT 57.654 30.769 0.00 0.00 36.12 2.52
1936 4226 8.025445 ACAAGATGTTGCACTCAAATATCTTTC 58.975 33.333 1.83 0.00 41.41 2.62
1937 4227 7.889469 ACAAGATGTTGCACTCAAATATCTTT 58.111 30.769 1.83 0.00 41.41 2.52
1939 4229 7.458409 AACAAGATGTTGCACTCAAATATCT 57.542 32.000 1.83 0.00 39.45 1.98
1940 4230 8.430063 CAAAACAAGATGTTGCACTCAAATATC 58.570 33.333 1.83 0.00 40.14 1.63
1941 4231 7.095523 GCAAAACAAGATGTTGCACTCAAATAT 60.096 33.333 1.83 0.00 45.51 1.28
1942 4232 6.200665 GCAAAACAAGATGTTGCACTCAAATA 59.799 34.615 1.83 0.00 45.51 1.40
1943 4233 5.006941 GCAAAACAAGATGTTGCACTCAAAT 59.993 36.000 1.83 0.00 45.51 2.32
1944 4234 4.329528 GCAAAACAAGATGTTGCACTCAAA 59.670 37.500 1.83 0.00 45.51 2.69
1968 4258 3.543680 ATATCAACGTGCTTGCTAGGT 57.456 42.857 0.00 0.00 0.00 3.08
1994 4284 2.028658 TCAGGCTGACAGATCACAGAAC 60.029 50.000 14.43 8.98 36.38 3.01
2001 4291 1.602668 GCGATCTCAGGCTGACAGATC 60.603 57.143 25.61 25.61 33.92 2.75
2010 4312 1.224965 GATCCAAAGCGATCTCAGGC 58.775 55.000 0.00 0.00 36.51 4.85
2016 4318 6.020121 CACATCAAAATTGATCCAAAGCGATC 60.020 38.462 5.68 0.00 45.62 3.69
2073 4398 8.267183 TGTCTATCTATTGCCATCTTTCTGAAA 58.733 33.333 2.44 2.44 0.00 2.69
2074 4399 7.795047 TGTCTATCTATTGCCATCTTTCTGAA 58.205 34.615 0.00 0.00 0.00 3.02
2075 4400 7.365497 TGTCTATCTATTGCCATCTTTCTGA 57.635 36.000 0.00 0.00 0.00 3.27
2076 4401 8.618702 ATTGTCTATCTATTGCCATCTTTCTG 57.381 34.615 0.00 0.00 0.00 3.02
2099 4428 8.235226 CGATCATCCTGTACGTGTAGTATTATT 58.765 37.037 0.00 0.00 37.69 1.40
2101 4430 6.707608 ACGATCATCCTGTACGTGTAGTATTA 59.292 38.462 0.00 0.00 37.69 0.98
2102 4431 5.530171 ACGATCATCCTGTACGTGTAGTATT 59.470 40.000 0.00 0.00 37.69 1.89
2104 4433 4.445453 ACGATCATCCTGTACGTGTAGTA 58.555 43.478 0.00 0.00 35.91 1.82
2105 4434 3.276857 ACGATCATCCTGTACGTGTAGT 58.723 45.455 0.00 0.00 35.91 2.73
2107 4436 4.190772 TGTACGATCATCCTGTACGTGTA 58.809 43.478 0.00 0.00 40.97 2.90
2108 4437 3.011818 TGTACGATCATCCTGTACGTGT 58.988 45.455 0.00 0.00 40.97 4.49
2109 4438 3.685836 TGTACGATCATCCTGTACGTG 57.314 47.619 0.00 0.00 40.97 4.49
2110 4439 4.157289 ACTTTGTACGATCATCCTGTACGT 59.843 41.667 0.00 0.00 40.97 3.57
2111 4440 4.669318 ACTTTGTACGATCATCCTGTACG 58.331 43.478 0.00 0.00 40.97 3.67
2112 4441 6.963049 AAACTTTGTACGATCATCCTGTAC 57.037 37.500 0.00 0.00 39.08 2.90
2113 4442 8.089597 TGTAAAACTTTGTACGATCATCCTGTA 58.910 33.333 0.00 0.00 0.00 2.74
2114 4443 6.932400 TGTAAAACTTTGTACGATCATCCTGT 59.068 34.615 0.00 0.00 0.00 4.00
2115 4444 7.359262 TGTAAAACTTTGTACGATCATCCTG 57.641 36.000 0.00 0.00 0.00 3.86
2116 4445 6.594159 CCTGTAAAACTTTGTACGATCATCCT 59.406 38.462 0.00 0.00 0.00 3.24
2117 4446 6.592607 TCCTGTAAAACTTTGTACGATCATCC 59.407 38.462 0.00 0.00 0.00 3.51
2118 4447 7.591006 TCCTGTAAAACTTTGTACGATCATC 57.409 36.000 0.00 0.00 0.00 2.92
2119 4448 7.822334 TCATCCTGTAAAACTTTGTACGATCAT 59.178 33.333 0.00 0.00 0.00 2.45
2120 4449 7.117236 GTCATCCTGTAAAACTTTGTACGATCA 59.883 37.037 0.00 0.00 0.00 2.92
2121 4450 7.117236 TGTCATCCTGTAAAACTTTGTACGATC 59.883 37.037 0.00 0.00 0.00 3.69
2122 4451 6.932400 TGTCATCCTGTAAAACTTTGTACGAT 59.068 34.615 0.00 0.00 0.00 3.73
2123 4452 6.282167 TGTCATCCTGTAAAACTTTGTACGA 58.718 36.000 0.00 0.00 0.00 3.43
2124 4453 6.533819 TGTCATCCTGTAAAACTTTGTACG 57.466 37.500 0.00 0.00 0.00 3.67
2125 4454 6.849305 CGTTGTCATCCTGTAAAACTTTGTAC 59.151 38.462 0.00 0.00 0.00 2.90
2126 4455 6.539464 ACGTTGTCATCCTGTAAAACTTTGTA 59.461 34.615 0.00 0.00 0.00 2.41
2127 4456 5.355910 ACGTTGTCATCCTGTAAAACTTTGT 59.644 36.000 0.00 0.00 0.00 2.83
2128 4457 5.681105 CACGTTGTCATCCTGTAAAACTTTG 59.319 40.000 0.00 0.00 0.00 2.77
2129 4458 5.220970 CCACGTTGTCATCCTGTAAAACTTT 60.221 40.000 0.00 0.00 0.00 2.66
2130 4459 4.274950 CCACGTTGTCATCCTGTAAAACTT 59.725 41.667 0.00 0.00 0.00 2.66
2131 4460 3.813166 CCACGTTGTCATCCTGTAAAACT 59.187 43.478 0.00 0.00 0.00 2.66
2132 4461 3.608474 GCCACGTTGTCATCCTGTAAAAC 60.608 47.826 0.00 0.00 0.00 2.43
2133 4462 2.550606 GCCACGTTGTCATCCTGTAAAA 59.449 45.455 0.00 0.00 0.00 1.52
2134 4463 2.147958 GCCACGTTGTCATCCTGTAAA 58.852 47.619 0.00 0.00 0.00 2.01
2135 4464 1.609580 GGCCACGTTGTCATCCTGTAA 60.610 52.381 0.00 0.00 0.00 2.41
2136 4465 0.036765 GGCCACGTTGTCATCCTGTA 60.037 55.000 0.00 0.00 0.00 2.74
2137 4466 1.302511 GGCCACGTTGTCATCCTGT 60.303 57.895 0.00 0.00 0.00 4.00
2138 4467 0.249120 TAGGCCACGTTGTCATCCTG 59.751 55.000 5.01 0.00 0.00 3.86
2139 4468 0.981183 TTAGGCCACGTTGTCATCCT 59.019 50.000 5.01 0.00 0.00 3.24
2140 4469 1.940613 GATTAGGCCACGTTGTCATCC 59.059 52.381 5.01 0.00 0.00 3.51
2141 4470 2.906354 AGATTAGGCCACGTTGTCATC 58.094 47.619 5.01 0.00 0.00 2.92
2142 4471 4.481368 TTAGATTAGGCCACGTTGTCAT 57.519 40.909 5.01 0.00 0.00 3.06
2143 4472 3.965379 TTAGATTAGGCCACGTTGTCA 57.035 42.857 5.01 0.00 0.00 3.58
2144 4473 4.495844 GCAATTAGATTAGGCCACGTTGTC 60.496 45.833 5.01 0.00 0.00 3.18
2145 4474 3.377172 GCAATTAGATTAGGCCACGTTGT 59.623 43.478 5.01 0.00 0.00 3.32
2146 4475 3.627577 AGCAATTAGATTAGGCCACGTTG 59.372 43.478 5.01 0.00 0.00 4.10
2147 4476 3.877508 GAGCAATTAGATTAGGCCACGTT 59.122 43.478 5.01 0.00 0.00 3.99
2148 4477 3.467803 GAGCAATTAGATTAGGCCACGT 58.532 45.455 5.01 0.00 0.00 4.49
2149 4478 2.808543 GGAGCAATTAGATTAGGCCACG 59.191 50.000 5.01 0.00 0.00 4.94
2150 4479 3.149981 GGGAGCAATTAGATTAGGCCAC 58.850 50.000 5.01 0.00 0.00 5.01
2151 4480 2.108250 GGGGAGCAATTAGATTAGGCCA 59.892 50.000 5.01 0.00 0.00 5.36
2152 4481 2.555448 GGGGGAGCAATTAGATTAGGCC 60.555 54.545 0.00 0.00 0.00 5.19
2153 4482 2.796557 GGGGGAGCAATTAGATTAGGC 58.203 52.381 0.00 0.00 0.00 3.93
2175 4504 0.972471 GGCCCCACCCTGAAAATCAG 60.972 60.000 0.00 0.32 43.91 2.90
2176 4505 1.078347 GGCCCCACCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
2177 4506 2.052104 CGGCCCCACCCTGAAAATC 61.052 63.158 0.00 0.00 33.26 2.17
2178 4507 2.037208 CGGCCCCACCCTGAAAAT 59.963 61.111 0.00 0.00 33.26 1.82
2179 4508 3.501040 GACGGCCCCACCCTGAAAA 62.501 63.158 0.00 0.00 33.26 2.29
2180 4509 3.961414 GACGGCCCCACCCTGAAA 61.961 66.667 0.00 0.00 33.26 2.69
2191 4520 1.153025 GTGATTAAGGGGGACGGCC 60.153 63.158 0.00 0.00 0.00 6.13
2192 4521 0.182775 ATGTGATTAAGGGGGACGGC 59.817 55.000 0.00 0.00 0.00 5.68
2193 4522 2.572290 GAATGTGATTAAGGGGGACGG 58.428 52.381 0.00 0.00 0.00 4.79
2194 4523 2.092646 TGGAATGTGATTAAGGGGGACG 60.093 50.000 0.00 0.00 0.00 4.79
2195 4524 3.662759 TGGAATGTGATTAAGGGGGAC 57.337 47.619 0.00 0.00 0.00 4.46
2196 4525 3.309556 GGTTGGAATGTGATTAAGGGGGA 60.310 47.826 0.00 0.00 0.00 4.81
2197 4526 3.031013 GGTTGGAATGTGATTAAGGGGG 58.969 50.000 0.00 0.00 0.00 5.40
2198 4527 3.707316 TGGTTGGAATGTGATTAAGGGG 58.293 45.455 0.00 0.00 0.00 4.79
2199 4528 5.421693 TGATTGGTTGGAATGTGATTAAGGG 59.578 40.000 0.00 0.00 0.00 3.95
2200 4529 6.332630 GTGATTGGTTGGAATGTGATTAAGG 58.667 40.000 0.00 0.00 0.00 2.69
2201 4530 6.029607 CGTGATTGGTTGGAATGTGATTAAG 58.970 40.000 0.00 0.00 0.00 1.85
2202 4531 5.475220 ACGTGATTGGTTGGAATGTGATTAA 59.525 36.000 0.00 0.00 0.00 1.40
2203 4532 5.007034 ACGTGATTGGTTGGAATGTGATTA 58.993 37.500 0.00 0.00 0.00 1.75
2204 4533 3.826157 ACGTGATTGGTTGGAATGTGATT 59.174 39.130 0.00 0.00 0.00 2.57
2205 4534 3.420893 ACGTGATTGGTTGGAATGTGAT 58.579 40.909 0.00 0.00 0.00 3.06
2206 4535 2.857483 ACGTGATTGGTTGGAATGTGA 58.143 42.857 0.00 0.00 0.00 3.58
2207 4536 3.500299 TGTACGTGATTGGTTGGAATGTG 59.500 43.478 0.00 0.00 0.00 3.21
2208 4537 3.745799 TGTACGTGATTGGTTGGAATGT 58.254 40.909 0.00 0.00 0.00 2.71
2209 4538 3.426159 GCTGTACGTGATTGGTTGGAATG 60.426 47.826 0.00 0.00 0.00 2.67
2210 4539 2.747446 GCTGTACGTGATTGGTTGGAAT 59.253 45.455 0.00 0.00 0.00 3.01
2211 4540 2.147958 GCTGTACGTGATTGGTTGGAA 58.852 47.619 0.00 0.00 0.00 3.53
2212 4541 1.609580 GGCTGTACGTGATTGGTTGGA 60.610 52.381 0.00 0.00 0.00 3.53
2213 4542 0.802494 GGCTGTACGTGATTGGTTGG 59.198 55.000 0.00 0.00 0.00 3.77
2214 4543 0.802494 GGGCTGTACGTGATTGGTTG 59.198 55.000 0.00 0.00 0.00 3.77
2215 4544 0.672401 CGGGCTGTACGTGATTGGTT 60.672 55.000 0.00 0.00 0.00 3.67
2216 4545 1.079405 CGGGCTGTACGTGATTGGT 60.079 57.895 0.00 0.00 0.00 3.67
2217 4546 1.813753 CCGGGCTGTACGTGATTGG 60.814 63.158 0.00 0.00 0.00 3.16
2218 4547 0.806102 CTCCGGGCTGTACGTGATTG 60.806 60.000 0.00 0.00 0.00 2.67
2219 4548 1.515954 CTCCGGGCTGTACGTGATT 59.484 57.895 0.00 0.00 0.00 2.57
2220 4549 3.077519 GCTCCGGGCTGTACGTGAT 62.078 63.158 0.00 0.00 38.06 3.06
2221 4550 3.755628 GCTCCGGGCTGTACGTGA 61.756 66.667 0.00 0.00 38.06 4.35
2224 4553 4.554363 CTCGCTCCGGGCTGTACG 62.554 72.222 0.00 0.00 39.13 3.67
2225 4554 4.208686 CCTCGCTCCGGGCTGTAC 62.209 72.222 0.00 0.00 39.13 2.90
2262 4594 3.818787 CGCCAACTGCTCCATGCC 61.819 66.667 0.00 0.00 42.00 4.40
2313 4647 2.542595 CGACAACTATTATCCAACCGCC 59.457 50.000 0.00 0.00 0.00 6.13
2316 4670 5.640357 TCACAACGACAACTATTATCCAACC 59.360 40.000 0.00 0.00 0.00 3.77
2326 4680 3.530265 ACCAGTTCACAACGACAACTA 57.470 42.857 0.00 0.00 36.23 2.24
2327 4681 2.396590 ACCAGTTCACAACGACAACT 57.603 45.000 0.00 0.00 36.23 3.16
2328 4682 3.126343 AGAAACCAGTTCACAACGACAAC 59.874 43.478 0.00 0.00 38.86 3.32
2363 4717 4.359706 AGTCGAGTTGAAACAAAAATGGC 58.640 39.130 0.00 0.00 0.00 4.40
2407 4764 2.224499 TGTGTGTGCATCAGTGTATGGT 60.224 45.455 0.00 0.00 0.00 3.55
2409 4766 3.069289 AGTGTGTGTGCATCAGTGTATG 58.931 45.455 0.00 0.00 0.00 2.39
2410 4767 3.069289 CAGTGTGTGTGCATCAGTGTAT 58.931 45.455 0.00 0.00 0.00 2.29
2411 4768 2.158971 ACAGTGTGTGTGCATCAGTGTA 60.159 45.455 16.84 0.00 41.81 2.90
2412 4769 1.302366 CAGTGTGTGTGCATCAGTGT 58.698 50.000 0.00 0.00 0.00 3.55
2413 4770 1.262417 GACAGTGTGTGTGCATCAGTG 59.738 52.381 0.00 13.43 40.56 3.66
2414 4771 1.586422 GACAGTGTGTGTGCATCAGT 58.414 50.000 0.00 0.00 40.56 3.41
2415 4772 0.509929 CGACAGTGTGTGTGCATCAG 59.490 55.000 0.00 0.00 40.56 2.90
2416 4773 1.498043 GCGACAGTGTGTGTGCATCA 61.498 55.000 0.00 0.00 40.56 3.07
2417 4774 1.205064 GCGACAGTGTGTGTGCATC 59.795 57.895 0.00 0.00 40.56 3.91
2418 4775 1.501337 CTGCGACAGTGTGTGTGCAT 61.501 55.000 0.00 0.00 40.56 3.96
2419 4776 2.125350 TGCGACAGTGTGTGTGCA 60.125 55.556 0.00 2.51 40.56 4.57
2420 4777 2.628106 CTGCGACAGTGTGTGTGC 59.372 61.111 0.00 0.00 40.56 4.57
2421 4778 2.628106 GCTGCGACAGTGTGTGTG 59.372 61.111 0.00 0.00 40.56 3.82
2422 4779 2.588877 GGCTGCGACAGTGTGTGT 60.589 61.111 0.00 0.00 44.49 3.72
2425 4782 3.705638 CACGGCTGCGACAGTGTG 61.706 66.667 0.00 14.44 35.22 3.82
2445 4802 7.484140 CCATATTTTCCTCTTTTCTACCTTGC 58.516 38.462 0.00 0.00 0.00 4.01
2447 4804 6.318900 CGCCATATTTTCCTCTTTTCTACCTT 59.681 38.462 0.00 0.00 0.00 3.50
2448 4805 5.823045 CGCCATATTTTCCTCTTTTCTACCT 59.177 40.000 0.00 0.00 0.00 3.08
2449 4806 5.820947 TCGCCATATTTTCCTCTTTTCTACC 59.179 40.000 0.00 0.00 0.00 3.18
2450 4807 6.509677 CGTCGCCATATTTTCCTCTTTTCTAC 60.510 42.308 0.00 0.00 0.00 2.59
2452 4809 4.332819 CGTCGCCATATTTTCCTCTTTTCT 59.667 41.667 0.00 0.00 0.00 2.52
2453 4810 4.094442 ACGTCGCCATATTTTCCTCTTTTC 59.906 41.667 0.00 0.00 0.00 2.29
2454 4811 4.007659 ACGTCGCCATATTTTCCTCTTTT 58.992 39.130 0.00 0.00 0.00 2.27
2456 4813 2.936498 CACGTCGCCATATTTTCCTCTT 59.064 45.455 0.00 0.00 0.00 2.85
2466 4894 1.428370 GCTGCAATCACGTCGCCATA 61.428 55.000 0.00 0.00 0.00 2.74
2472 4900 2.476051 CACCGCTGCAATCACGTC 59.524 61.111 0.00 0.00 0.00 4.34
2478 4906 0.881118 CAAGTTACCACCGCTGCAAT 59.119 50.000 0.00 0.00 0.00 3.56
2479 4907 1.169661 CCAAGTTACCACCGCTGCAA 61.170 55.000 0.00 0.00 0.00 4.08
2486 4914 1.907255 AGCTAGGTCCAAGTTACCACC 59.093 52.381 0.00 0.00 39.64 4.61
2490 4918 3.430513 GGCAGTAGCTAGGTCCAAGTTAC 60.431 52.174 0.00 0.00 41.70 2.50
2491 4919 2.764572 GGCAGTAGCTAGGTCCAAGTTA 59.235 50.000 0.00 0.00 41.70 2.24
2492 4920 1.555533 GGCAGTAGCTAGGTCCAAGTT 59.444 52.381 0.00 0.00 41.70 2.66
2510 4938 2.870119 TTGTTGCATGTGCTGGGGC 61.870 57.895 6.55 0.00 42.66 5.80
2511 4939 1.005867 GTTGTTGCATGTGCTGGGG 60.006 57.895 6.55 0.00 42.66 4.96
2512 4940 0.598158 GTGTTGTTGCATGTGCTGGG 60.598 55.000 6.55 0.00 42.66 4.45
2513 4941 0.598158 GGTGTTGTTGCATGTGCTGG 60.598 55.000 6.55 0.00 42.66 4.85
2515 4943 0.670162 GAGGTGTTGTTGCATGTGCT 59.330 50.000 6.55 0.00 42.66 4.40
2517 4945 2.224606 AGAGAGGTGTTGTTGCATGTG 58.775 47.619 0.00 0.00 0.00 3.21
2518 4946 2.498167 GAGAGAGGTGTTGTTGCATGT 58.502 47.619 0.00 0.00 0.00 3.21
2519 4947 1.462283 CGAGAGAGGTGTTGTTGCATG 59.538 52.381 0.00 0.00 0.00 4.06
2521 4949 0.464036 ACGAGAGAGGTGTTGTTGCA 59.536 50.000 0.00 0.00 0.00 4.08
2522 4950 1.140816 GACGAGAGAGGTGTTGTTGC 58.859 55.000 0.00 0.00 0.00 4.17
2523 4951 1.409412 CGACGAGAGAGGTGTTGTTG 58.591 55.000 0.00 0.00 0.00 3.33
2536 4987 4.592936 CCCTAGCGACGCGACGAG 62.593 72.222 33.07 21.52 35.09 4.18
2601 6508 0.242825 TTTGGCCACTCTACGAGACG 59.757 55.000 3.88 0.00 33.32 4.18
2603 6510 2.457598 AGATTTGGCCACTCTACGAGA 58.542 47.619 3.88 0.00 33.32 4.04
2604 6511 2.932614 CAAGATTTGGCCACTCTACGAG 59.067 50.000 3.88 0.00 35.52 4.18
2605 6512 2.354704 CCAAGATTTGGCCACTCTACGA 60.355 50.000 3.88 0.00 45.17 3.43
2606 6513 2.009774 CCAAGATTTGGCCACTCTACG 58.990 52.381 3.88 5.95 45.17 3.51
2622 6529 0.811281 GAAGCCCCGTTTGATCCAAG 59.189 55.000 0.00 0.00 0.00 3.61
2636 6543 1.900245 TCCCCGTAAAAACTGAAGCC 58.100 50.000 0.00 0.00 0.00 4.35
2648 6555 0.609681 GGGCAACAACATTCCCCGTA 60.610 55.000 0.00 0.00 39.74 4.02
2692 6599 3.068732 TCCTCGGAATGCTTGTCTGATAG 59.931 47.826 0.00 0.00 30.07 2.08
2700 6607 0.798776 GTGTGTCCTCGGAATGCTTG 59.201 55.000 0.00 0.00 0.00 4.01
2702 6609 1.296715 GGTGTGTCCTCGGAATGCT 59.703 57.895 0.00 0.00 0.00 3.79
2731 6643 2.559840 CAGTTGGAAGCAGCGCTG 59.440 61.111 32.83 32.83 39.62 5.18
2733 6645 4.748679 CGCAGTTGGAAGCAGCGC 62.749 66.667 0.00 0.00 41.95 5.92
2740 6652 0.944386 GTTCAGAAGCGCAGTTGGAA 59.056 50.000 11.47 3.64 0.00 3.53
2750 6662 1.166531 AGCACCGGTTGTTCAGAAGC 61.167 55.000 2.97 0.99 0.00 3.86
2751 6663 0.868406 GAGCACCGGTTGTTCAGAAG 59.132 55.000 2.97 0.00 35.56 2.85
2760 6672 1.227853 GGTGAACAGAGCACCGGTT 60.228 57.895 2.97 0.00 45.50 4.44
2779 6691 1.000955 TCAAGTCGAGGAAGGTGAAGC 59.999 52.381 0.00 0.00 0.00 3.86
2790 6703 5.932303 TGATAAAAGGAAAGGTCAAGTCGAG 59.068 40.000 0.00 0.00 0.00 4.04
2810 6723 5.184479 ACGACTGCAAGGTTTACTAGTGATA 59.816 40.000 5.39 0.00 39.30 2.15
2811 6724 4.021368 ACGACTGCAAGGTTTACTAGTGAT 60.021 41.667 5.39 0.00 39.30 3.06
2812 6725 3.319972 ACGACTGCAAGGTTTACTAGTGA 59.680 43.478 5.39 0.00 39.30 3.41
2813 6726 3.428870 CACGACTGCAAGGTTTACTAGTG 59.571 47.826 5.39 0.00 39.30 2.74
2814 6727 3.069158 ACACGACTGCAAGGTTTACTAGT 59.931 43.478 0.00 0.00 39.30 2.57
2816 6729 3.645884 GACACGACTGCAAGGTTTACTA 58.354 45.455 0.00 0.00 39.30 1.82
2817 6730 2.480845 GACACGACTGCAAGGTTTACT 58.519 47.619 0.00 0.00 39.30 2.24
2819 6732 1.493772 CGACACGACTGCAAGGTTTA 58.506 50.000 0.00 0.00 39.30 2.01
2839 6752 0.033366 ATCAAGGGGCAAAAACACGC 59.967 50.000 0.00 0.00 0.00 5.34
2854 6767 8.052748 ACTAGTGGCTGGATAAACAAATATCAA 58.947 33.333 0.00 0.00 34.58 2.57
2855 6768 7.573710 ACTAGTGGCTGGATAAACAAATATCA 58.426 34.615 0.00 0.00 34.58 2.15
2856 6769 8.989980 GTACTAGTGGCTGGATAAACAAATATC 58.010 37.037 5.39 0.00 0.00 1.63
2857 6770 7.937394 GGTACTAGTGGCTGGATAAACAAATAT 59.063 37.037 5.39 0.00 0.00 1.28
2859 6772 6.120220 GGTACTAGTGGCTGGATAAACAAAT 58.880 40.000 5.39 0.00 0.00 2.32
2863 6776 3.453353 TGGGTACTAGTGGCTGGATAAAC 59.547 47.826 5.39 0.00 0.00 2.01
2864 6777 3.709653 CTGGGTACTAGTGGCTGGATAAA 59.290 47.826 5.39 0.00 29.98 1.40
2866 6779 2.516702 TCTGGGTACTAGTGGCTGGATA 59.483 50.000 5.39 0.00 38.42 2.59
2867 6780 1.291033 TCTGGGTACTAGTGGCTGGAT 59.709 52.381 5.39 0.00 38.42 3.41
2868 6781 0.708209 TCTGGGTACTAGTGGCTGGA 59.292 55.000 5.39 0.00 38.42 3.86
2869 6782 1.414181 CATCTGGGTACTAGTGGCTGG 59.586 57.143 5.39 0.00 38.42 4.85
2870 6783 2.388735 TCATCTGGGTACTAGTGGCTG 58.611 52.381 5.39 0.00 38.42 4.85
2871 6784 2.848678 TCATCTGGGTACTAGTGGCT 57.151 50.000 5.39 0.00 38.42 4.75
2872 6785 3.906720 TTTCATCTGGGTACTAGTGGC 57.093 47.619 5.39 0.00 38.42 5.01
2873 6786 5.614324 TCATTTCATCTGGGTACTAGTGG 57.386 43.478 5.39 0.00 38.42 4.00
2874 6787 5.923114 CGATCATTTCATCTGGGTACTAGTG 59.077 44.000 5.39 0.00 38.42 2.74
2875 6788 5.833667 TCGATCATTTCATCTGGGTACTAGT 59.166 40.000 0.00 0.00 38.42 2.57
2882 6795 4.037089 TGCAAATCGATCATTTCATCTGGG 59.963 41.667 0.00 0.00 31.79 4.45
2907 6820 7.765695 AAATGCAACTGAGGAAAGAAATCTA 57.234 32.000 0.00 0.00 0.00 1.98
2916 6829 8.579850 AAGTGATAATAAATGCAACTGAGGAA 57.420 30.769 0.00 0.00 0.00 3.36
2921 6834 8.072567 GGCTCTAAGTGATAATAAATGCAACTG 58.927 37.037 0.00 0.00 0.00 3.16
2925 6838 7.739825 AGAGGCTCTAAGTGATAATAAATGCA 58.260 34.615 17.09 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.