Multiple sequence alignment - TraesCS5A01G289100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G289100 chr5A 100.000 3753 0 0 1 3753 495936665 495932913 0.000000e+00 6931.0
1 TraesCS5A01G289100 chr5A 80.000 310 50 10 3435 3735 588600412 588600718 6.310000e-53 219.0
2 TraesCS5A01G289100 chr5A 100.000 30 0 0 275 304 702464253 702464282 5.240000e-04 56.5
3 TraesCS5A01G289100 chr5D 89.497 1371 68 27 2032 3397 393939391 393938092 0.000000e+00 1664.0
4 TraesCS5A01G289100 chr5D 87.446 932 48 27 613 1502 393940998 393940094 0.000000e+00 1009.0
5 TraesCS5A01G289100 chr5D 85.014 367 31 10 2989 3341 393909030 393908674 5.960000e-93 351.0
6 TraesCS5A01G289100 chr5D 84.680 359 44 9 3397 3745 393938050 393937693 7.720000e-92 348.0
7 TraesCS5A01G289100 chr5D 86.513 304 29 5 2986 3288 393905504 393905212 1.300000e-84 324.0
8 TraesCS5A01G289100 chr5D 94.949 198 10 0 1507 1704 209854860 209854663 1.010000e-80 311.0
9 TraesCS5A01G289100 chr5D 87.671 219 18 4 1821 2032 393939647 393939431 2.900000e-61 246.0
10 TraesCS5A01G289100 chr5B 90.777 1171 65 20 2053 3220 473791642 473790512 0.000000e+00 1524.0
11 TraesCS5A01G289100 chr5B 86.878 945 50 24 589 1500 473793496 473792593 0.000000e+00 990.0
12 TraesCS5A01G289100 chr5B 85.714 301 37 5 3450 3746 473790265 473789967 2.810000e-81 313.0
13 TraesCS5A01G289100 chr5B 80.229 349 57 10 3399 3737 574917452 574917798 6.220000e-63 252.0
14 TraesCS5A01G289100 chr5B 88.770 187 20 1 2992 3177 473775978 473775792 1.050000e-55 228.0
15 TraesCS5A01G289100 chr5B 86.905 84 8 1 3275 3358 473775693 473775613 1.440000e-14 91.6
16 TraesCS5A01G289100 chr5B 84.615 91 7 5 1700 1783 473791937 473791847 2.400000e-12 84.2
17 TraesCS5A01G289100 chr4A 95.960 198 8 0 1504 1701 104373119 104373316 4.680000e-84 322.0
18 TraesCS5A01G289100 chr4A 94.737 38 2 0 274 311 548569060 548569097 4.050000e-05 60.2
19 TraesCS5A01G289100 chr2A 95.960 198 8 0 1504 1701 528661763 528661960 4.680000e-84 322.0
20 TraesCS5A01G289100 chr2A 95.918 196 8 0 1504 1699 103588188 103588383 6.050000e-83 318.0
21 TraesCS5A01G289100 chr3B 96.373 193 7 0 1507 1699 811005558 811005366 6.050000e-83 318.0
22 TraesCS5A01G289100 chr3B 80.226 354 55 14 3400 3746 289283026 289283371 6.220000e-63 252.0
23 TraesCS5A01G289100 chr6A 95.408 196 9 0 1504 1699 115182363 115182558 2.810000e-81 313.0
24 TraesCS5A01G289100 chr7A 94.146 205 9 3 1496 1699 561888185 561887983 3.640000e-80 309.0
25 TraesCS5A01G289100 chr7A 78.035 346 63 9 3401 3738 241275932 241275592 4.910000e-49 206.0
26 TraesCS5A01G289100 chr7A 83.750 160 17 4 2053 2210 676957333 676957181 3.910000e-30 143.0
27 TraesCS5A01G289100 chr1B 94.416 197 11 0 1504 1700 32430739 32430935 1.690000e-78 303.0
28 TraesCS5A01G289100 chr1A 95.312 192 7 1 1510 1701 454738988 454738799 1.690000e-78 303.0
29 TraesCS5A01G289100 chr1A 79.720 143 17 3 382 515 7064986 7065125 3.990000e-15 93.5
30 TraesCS5A01G289100 chr3A 81.921 354 52 9 3400 3746 256992514 256992166 4.740000e-74 289.0
31 TraesCS5A01G289100 chr4D 82.155 297 47 5 3435 3726 93285702 93285997 2.240000e-62 250.0
32 TraesCS5A01G289100 chr4D 80.380 316 48 10 3438 3746 238609352 238609044 1.050000e-55 228.0
33 TraesCS5A01G289100 chr7D 85.443 158 18 4 2053 2210 584609544 584609696 3.880000e-35 159.0
34 TraesCS5A01G289100 chr7B 87.692 130 13 2 2084 2210 656299204 656299075 8.400000e-32 148.0
35 TraesCS5A01G289100 chr7B 83.125 160 17 5 2053 2210 652452210 652452361 1.820000e-28 137.0
36 TraesCS5A01G289100 chr7B 81.646 158 23 5 2053 2210 652413100 652413251 3.940000e-25 126.0
37 TraesCS5A01G289100 chr3D 94.737 38 2 0 275 312 361372485 361372448 4.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G289100 chr5A 495932913 495936665 3752 True 6931.00 6931 100.0000 1 3753 1 chr5A.!!$R1 3752
1 TraesCS5A01G289100 chr5D 393937693 393940998 3305 True 816.75 1664 87.3235 613 3745 4 chr5D.!!$R3 3132
2 TraesCS5A01G289100 chr5D 393905212 393909030 3818 True 337.50 351 85.7635 2986 3341 2 chr5D.!!$R2 355
3 TraesCS5A01G289100 chr5B 473789967 473793496 3529 True 727.80 1524 86.9960 589 3746 4 chr5B.!!$R2 3157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.108089 TCAGGCGCGGCTAATTAACA 60.108 50.0 35.79 10.06 0.0 2.41 F
256 257 0.250901 ACACCTTGGGACATGAGTGC 60.251 55.0 0.00 0.00 39.3 4.40 F
555 556 0.319125 TTTCCAAAAATCCGCACCGC 60.319 50.0 0.00 0.00 0.0 5.68 F
1794 2356 0.179121 AAATGATGCCTGCATGCGTG 60.179 50.0 13.77 7.59 36.7 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 2155 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.0 0.00 0.00 0.0 3.11 R
1782 2344 0.236711 GATCATACACGCATGCAGGC 59.763 55.0 19.57 14.55 0.0 4.85 R
2491 3106 0.388649 GCCAGAAGAAGAGCGACGAA 60.389 55.0 0.00 0.00 0.0 3.85 R
3382 4125 0.034089 ACTATTGGGGCAGCAAGGTC 60.034 55.0 0.00 0.00 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 2.464682 GTGTCTGCACTCATCAGGC 58.535 57.895 0.00 0.00 42.13 4.85
135 136 1.079612 TGTCTGCACTCATCAGGCG 60.080 57.895 0.00 0.00 38.91 5.52
136 137 2.125391 TCTGCACTCATCAGGCGC 60.125 61.111 0.00 0.00 32.63 6.53
137 138 3.561213 CTGCACTCATCAGGCGCG 61.561 66.667 0.00 0.00 0.00 6.86
141 142 3.147595 ACTCATCAGGCGCGGCTA 61.148 61.111 35.79 22.61 0.00 3.93
143 144 1.301244 CTCATCAGGCGCGGCTAAT 60.301 57.895 35.79 25.25 0.00 1.73
144 145 0.882042 CTCATCAGGCGCGGCTAATT 60.882 55.000 35.79 19.38 0.00 1.40
145 146 0.391228 TCATCAGGCGCGGCTAATTA 59.609 50.000 35.79 16.05 0.00 1.40
148 149 0.108089 TCAGGCGCGGCTAATTAACA 60.108 50.000 35.79 10.06 0.00 2.41
149 150 0.730265 CAGGCGCGGCTAATTAACAA 59.270 50.000 35.79 0.00 0.00 2.83
150 151 0.730840 AGGCGCGGCTAATTAACAAC 59.269 50.000 35.57 0.00 0.00 3.32
151 152 0.448593 GGCGCGGCTAATTAACAACA 59.551 50.000 27.05 0.00 0.00 3.33
152 153 1.064952 GGCGCGGCTAATTAACAACAT 59.935 47.619 27.05 0.00 0.00 2.71
153 154 2.372350 GCGCGGCTAATTAACAACATC 58.628 47.619 8.83 0.00 0.00 3.06
154 155 2.031683 GCGCGGCTAATTAACAACATCT 59.968 45.455 8.83 0.00 0.00 2.90
156 157 3.546020 CGCGGCTAATTAACAACATCTGG 60.546 47.826 0.00 0.00 0.00 3.86
161 162 5.239525 GGCTAATTAACAACATCTGGCCTAG 59.760 44.000 3.32 0.00 33.87 3.02
162 163 6.055588 GCTAATTAACAACATCTGGCCTAGA 58.944 40.000 3.32 5.76 40.37 2.43
163 164 6.203723 GCTAATTAACAACATCTGGCCTAGAG 59.796 42.308 3.32 0.00 39.20 2.43
164 165 4.487714 TTAACAACATCTGGCCTAGAGG 57.512 45.455 3.32 9.75 42.74 3.69
165 166 2.254152 ACAACATCTGGCCTAGAGGA 57.746 50.000 19.25 5.01 39.53 3.71
167 168 2.437281 ACAACATCTGGCCTAGAGGATG 59.563 50.000 19.25 18.81 43.16 3.51
168 169 1.727062 ACATCTGGCCTAGAGGATGG 58.273 55.000 19.25 6.51 39.53 3.51
169 170 1.221523 ACATCTGGCCTAGAGGATGGA 59.778 52.381 19.25 0.00 39.53 3.41
170 171 1.622811 CATCTGGCCTAGAGGATGGAC 59.377 57.143 3.32 0.00 39.53 4.02
171 172 0.937441 TCTGGCCTAGAGGATGGACT 59.063 55.000 3.32 0.00 37.39 3.85
172 173 2.144450 TCTGGCCTAGAGGATGGACTA 58.856 52.381 3.32 0.00 37.39 2.59
173 174 2.518407 TCTGGCCTAGAGGATGGACTAA 59.482 50.000 3.32 0.00 37.39 2.24
174 175 3.052109 TCTGGCCTAGAGGATGGACTAAA 60.052 47.826 3.32 0.00 37.39 1.85
198 199 5.526506 AAAATCTGAGCTGAAGCAACTTT 57.473 34.783 4.90 0.00 45.16 2.66
199 200 4.500603 AATCTGAGCTGAAGCAACTTTG 57.499 40.909 4.90 0.00 45.16 2.77
200 201 2.923121 TCTGAGCTGAAGCAACTTTGT 58.077 42.857 4.90 0.00 45.16 2.83
201 202 3.282021 TCTGAGCTGAAGCAACTTTGTT 58.718 40.909 4.90 0.00 45.16 2.83
203 204 4.032703 TGAGCTGAAGCAACTTTGTTTC 57.967 40.909 10.63 10.63 45.13 2.78
210 211 5.641777 GAAGCAACTTTGTTTCAATCACC 57.358 39.130 12.20 0.00 44.55 4.02
211 212 5.343307 AAGCAACTTTGTTTCAATCACCT 57.657 34.783 0.00 0.00 0.00 4.00
212 213 5.343307 AGCAACTTTGTTTCAATCACCTT 57.657 34.783 0.00 0.00 0.00 3.50
214 215 6.172630 AGCAACTTTGTTTCAATCACCTTTT 58.827 32.000 0.00 0.00 0.00 2.27
215 216 6.092533 AGCAACTTTGTTTCAATCACCTTTTG 59.907 34.615 0.00 0.00 0.00 2.44
216 217 6.250089 CAACTTTGTTTCAATCACCTTTTGC 58.750 36.000 0.00 0.00 0.00 3.68
217 218 5.733676 ACTTTGTTTCAATCACCTTTTGCT 58.266 33.333 0.00 0.00 0.00 3.91
218 219 6.172630 ACTTTGTTTCAATCACCTTTTGCTT 58.827 32.000 0.00 0.00 0.00 3.91
219 220 6.092533 ACTTTGTTTCAATCACCTTTTGCTTG 59.907 34.615 0.00 0.00 33.35 4.01
221 222 5.486526 TGTTTCAATCACCTTTTGCTTGTT 58.513 33.333 0.00 0.00 33.73 2.83
222 223 5.936956 TGTTTCAATCACCTTTTGCTTGTTT 59.063 32.000 0.00 0.00 33.73 2.83
223 224 6.128336 TGTTTCAATCACCTTTTGCTTGTTTG 60.128 34.615 0.00 0.00 33.73 2.93
224 225 5.336150 TCAATCACCTTTTGCTTGTTTGA 57.664 34.783 0.00 0.00 33.73 2.69
225 226 5.108517 TCAATCACCTTTTGCTTGTTTGAC 58.891 37.500 0.00 0.00 33.73 3.18
226 227 3.143807 TCACCTTTTGCTTGTTTGACG 57.856 42.857 0.00 0.00 0.00 4.35
227 228 1.587946 CACCTTTTGCTTGTTTGACGC 59.412 47.619 0.00 0.00 0.00 5.19
228 229 0.845768 CCTTTTGCTTGTTTGACGCG 59.154 50.000 3.53 3.53 0.00 6.01
230 231 1.512771 CTTTTGCTTGTTTGACGCGTC 59.487 47.619 31.66 31.66 0.00 5.19
231 232 0.587737 TTTGCTTGTTTGACGCGTCG 60.588 50.000 31.88 18.54 0.00 5.12
233 234 1.274476 GCTTGTTTGACGCGTCGAA 59.726 52.632 32.76 32.76 0.00 3.71
235 236 1.852861 GCTTGTTTGACGCGTCGAAAA 60.853 47.619 36.57 31.02 34.97 2.29
236 237 2.635444 CTTGTTTGACGCGTCGAAAAT 58.365 42.857 36.57 2.69 34.97 1.82
237 238 3.790058 CTTGTTTGACGCGTCGAAAATA 58.210 40.909 36.57 25.05 34.97 1.40
238 239 3.158103 TGTTTGACGCGTCGAAAATAC 57.842 42.857 36.57 26.92 34.97 1.89
239 240 2.538861 TGTTTGACGCGTCGAAAATACA 59.461 40.909 36.57 28.88 34.97 2.29
240 241 2.841070 TTGACGCGTCGAAAATACAC 57.159 45.000 31.88 7.53 0.00 2.90
243 244 1.723003 GACGCGTCGAAAATACACCTT 59.277 47.619 25.19 0.00 0.00 3.50
244 245 1.458064 ACGCGTCGAAAATACACCTTG 59.542 47.619 5.58 0.00 0.00 3.61
245 246 1.201877 CGCGTCGAAAATACACCTTGG 60.202 52.381 0.00 0.00 0.00 3.61
246 247 1.129811 GCGTCGAAAATACACCTTGGG 59.870 52.381 0.00 0.00 0.00 4.12
247 248 2.690786 CGTCGAAAATACACCTTGGGA 58.309 47.619 0.00 0.00 0.00 4.37
248 249 2.414138 CGTCGAAAATACACCTTGGGAC 59.586 50.000 0.00 0.00 0.00 4.46
249 250 3.404899 GTCGAAAATACACCTTGGGACA 58.595 45.455 0.00 0.00 0.00 4.02
252 253 4.006989 CGAAAATACACCTTGGGACATGA 58.993 43.478 0.00 0.00 39.30 3.07
253 254 4.094887 CGAAAATACACCTTGGGACATGAG 59.905 45.833 0.00 0.00 39.30 2.90
255 256 3.634397 ATACACCTTGGGACATGAGTG 57.366 47.619 0.00 0.00 39.30 3.51
256 257 0.250901 ACACCTTGGGACATGAGTGC 60.251 55.000 0.00 0.00 39.30 4.40
257 258 1.003355 ACCTTGGGACATGAGTGCG 60.003 57.895 0.00 0.00 39.30 5.34
259 260 1.672030 CTTGGGACATGAGTGCGCA 60.672 57.895 5.66 5.66 39.30 6.09
260 261 1.002257 TTGGGACATGAGTGCGCAT 60.002 52.632 15.91 1.95 39.30 4.73
266 267 2.016961 CATGAGTGCGCATGTACCC 58.983 57.895 15.91 0.00 40.52 3.69
267 268 1.521457 ATGAGTGCGCATGTACCCG 60.521 57.895 15.91 0.00 0.00 5.28
268 269 1.955495 ATGAGTGCGCATGTACCCGA 61.955 55.000 15.91 0.00 0.00 5.14
269 270 1.447140 GAGTGCGCATGTACCCGAA 60.447 57.895 15.91 0.00 0.00 4.30
270 271 0.810031 GAGTGCGCATGTACCCGAAT 60.810 55.000 15.91 0.00 0.00 3.34
271 272 0.392461 AGTGCGCATGTACCCGAATT 60.392 50.000 15.91 0.00 0.00 2.17
273 274 1.298339 GCGCATGTACCCGAATTGC 60.298 57.895 0.30 0.00 0.00 3.56
274 275 1.987704 GCGCATGTACCCGAATTGCA 61.988 55.000 0.30 0.00 32.94 4.08
276 277 1.135546 CGCATGTACCCGAATTGCAAA 60.136 47.619 1.71 0.00 32.94 3.68
277 278 2.669670 CGCATGTACCCGAATTGCAAAA 60.670 45.455 1.71 0.00 32.94 2.44
279 280 3.932089 GCATGTACCCGAATTGCAAAAAT 59.068 39.130 1.71 0.00 33.58 1.82
280 281 5.105752 GCATGTACCCGAATTGCAAAAATA 58.894 37.500 1.71 0.00 33.58 1.40
281 282 5.231991 GCATGTACCCGAATTGCAAAAATAG 59.768 40.000 1.71 0.00 33.58 1.73
282 283 5.968528 TGTACCCGAATTGCAAAAATAGT 57.031 34.783 1.71 1.44 0.00 2.12
283 284 5.945155 TGTACCCGAATTGCAAAAATAGTC 58.055 37.500 1.71 0.00 0.00 2.59
285 286 5.461032 ACCCGAATTGCAAAAATAGTCAA 57.539 34.783 1.71 0.00 0.00 3.18
286 287 5.848406 ACCCGAATTGCAAAAATAGTCAAA 58.152 33.333 1.71 0.00 0.00 2.69
287 288 6.463360 ACCCGAATTGCAAAAATAGTCAAAT 58.537 32.000 1.71 0.00 0.00 2.32
288 289 7.607250 ACCCGAATTGCAAAAATAGTCAAATA 58.393 30.769 1.71 0.00 0.00 1.40
289 290 8.257306 ACCCGAATTGCAAAAATAGTCAAATAT 58.743 29.630 1.71 0.00 0.00 1.28
290 291 9.097257 CCCGAATTGCAAAAATAGTCAAATATT 57.903 29.630 1.71 0.00 0.00 1.28
333 334 7.189693 CAAGCATTGTCTAGTGTTTTACTCA 57.810 36.000 0.00 0.00 42.34 3.41
335 336 5.405571 AGCATTGTCTAGTGTTTTACTCACG 59.594 40.000 0.00 0.00 40.89 4.35
336 337 5.176958 GCATTGTCTAGTGTTTTACTCACGT 59.823 40.000 0.00 0.00 40.89 4.49
337 338 6.581370 CATTGTCTAGTGTTTTACTCACGTG 58.419 40.000 9.94 9.94 40.89 4.49
339 340 6.375945 TGTCTAGTGTTTTACTCACGTGTA 57.624 37.500 16.51 0.00 40.89 2.90
342 343 7.433131 TGTCTAGTGTTTTACTCACGTGTAAAG 59.567 37.037 16.51 8.37 41.51 1.85
343 344 7.433425 GTCTAGTGTTTTACTCACGTGTAAAGT 59.567 37.037 16.51 14.14 41.51 2.66
345 346 7.368480 AGTGTTTTACTCACGTGTAAAGTTT 57.632 32.000 16.51 0.00 41.51 2.66
346 347 7.809665 AGTGTTTTACTCACGTGTAAAGTTTT 58.190 30.769 16.51 0.05 41.51 2.43
347 348 7.747357 AGTGTTTTACTCACGTGTAAAGTTTTG 59.253 33.333 16.51 0.00 41.51 2.44
348 349 6.523893 TGTTTTACTCACGTGTAAAGTTTTGC 59.476 34.615 16.51 4.77 41.51 3.68
349 350 5.798015 TTACTCACGTGTAAAGTTTTGCA 57.202 34.783 16.51 0.00 30.48 4.08
350 351 4.688511 ACTCACGTGTAAAGTTTTGCAA 57.311 36.364 16.51 0.00 34.63 4.08
351 352 4.408694 ACTCACGTGTAAAGTTTTGCAAC 58.591 39.130 16.51 0.00 34.63 4.17
352 353 3.418094 TCACGTGTAAAGTTTTGCAACG 58.582 40.909 16.51 0.00 38.03 4.10
353 354 2.528287 CACGTGTAAAGTTTTGCAACGG 59.472 45.455 7.58 5.83 38.03 4.44
354 355 2.419324 ACGTGTAAAGTTTTGCAACGGA 59.581 40.909 0.00 0.00 38.03 4.69
355 356 3.119919 ACGTGTAAAGTTTTGCAACGGAA 60.120 39.130 0.00 0.00 38.03 4.30
356 357 4.039032 CGTGTAAAGTTTTGCAACGGAAT 58.961 39.130 0.00 0.00 38.03 3.01
357 358 4.085822 CGTGTAAAGTTTTGCAACGGAATG 60.086 41.667 0.00 0.00 38.03 2.67
358 359 5.038033 GTGTAAAGTTTTGCAACGGAATGA 58.962 37.500 0.00 0.00 38.03 2.57
359 360 5.038033 TGTAAAGTTTTGCAACGGAATGAC 58.962 37.500 0.00 0.00 38.03 3.06
361 362 4.385358 AAGTTTTGCAACGGAATGACTT 57.615 36.364 0.00 0.00 38.03 3.01
362 363 4.385358 AGTTTTGCAACGGAATGACTTT 57.615 36.364 0.00 0.00 38.03 2.66
374 375 4.889832 GAATGACTTTCCTGGTATGCTG 57.110 45.455 0.00 0.00 0.00 4.41
377 378 4.574674 TGACTTTCCTGGTATGCTGAAT 57.425 40.909 0.00 0.00 0.00 2.57
379 380 4.019411 TGACTTTCCTGGTATGCTGAATGA 60.019 41.667 0.00 0.00 0.00 2.57
380 381 4.922206 ACTTTCCTGGTATGCTGAATGAA 58.078 39.130 0.00 0.00 0.00 2.57
381 382 5.513233 ACTTTCCTGGTATGCTGAATGAAT 58.487 37.500 0.00 0.00 0.00 2.57
383 384 7.118723 ACTTTCCTGGTATGCTGAATGAATAA 58.881 34.615 0.00 0.00 0.00 1.40
384 385 7.615365 ACTTTCCTGGTATGCTGAATGAATAAA 59.385 33.333 0.00 0.00 0.00 1.40
386 387 7.953005 TCCTGGTATGCTGAATGAATAAAAA 57.047 32.000 0.00 0.00 0.00 1.94
387 388 7.771183 TCCTGGTATGCTGAATGAATAAAAAC 58.229 34.615 0.00 0.00 0.00 2.43
388 389 7.395772 TCCTGGTATGCTGAATGAATAAAAACA 59.604 33.333 0.00 0.00 0.00 2.83
389 390 8.034215 CCTGGTATGCTGAATGAATAAAAACAA 58.966 33.333 0.00 0.00 0.00 2.83
390 391 9.421806 CTGGTATGCTGAATGAATAAAAACAAA 57.578 29.630 0.00 0.00 0.00 2.83
395 396 6.980978 TGCTGAATGAATAAAAACAAAACCGA 59.019 30.769 0.00 0.00 0.00 4.69
397 398 7.951565 GCTGAATGAATAAAAACAAAACCGATG 59.048 33.333 0.00 0.00 0.00 3.84
398 399 7.791949 TGAATGAATAAAAACAAAACCGATGC 58.208 30.769 0.00 0.00 0.00 3.91
399 400 7.655328 TGAATGAATAAAAACAAAACCGATGCT 59.345 29.630 0.00 0.00 0.00 3.79
400 401 9.134734 GAATGAATAAAAACAAAACCGATGCTA 57.865 29.630 0.00 0.00 0.00 3.49
401 402 9.651913 AATGAATAAAAACAAAACCGATGCTAT 57.348 25.926 0.00 0.00 0.00 2.97
408 409 8.856490 AAAACAAAACCGATGCTATATCAATC 57.144 30.769 0.00 0.00 0.00 2.67
409 410 7.807977 AACAAAACCGATGCTATATCAATCT 57.192 32.000 0.00 0.00 0.00 2.40
411 412 8.902540 ACAAAACCGATGCTATATCAATCTTA 57.097 30.769 0.00 0.00 0.00 2.10
412 413 8.774586 ACAAAACCGATGCTATATCAATCTTAC 58.225 33.333 0.00 0.00 0.00 2.34
413 414 7.907214 AAACCGATGCTATATCAATCTTACC 57.093 36.000 0.00 0.00 0.00 2.85
414 415 6.605471 ACCGATGCTATATCAATCTTACCA 57.395 37.500 0.00 0.00 0.00 3.25
415 416 7.187824 ACCGATGCTATATCAATCTTACCAT 57.812 36.000 0.00 0.00 0.00 3.55
416 417 7.624549 ACCGATGCTATATCAATCTTACCATT 58.375 34.615 0.00 0.00 0.00 3.16
417 418 7.766278 ACCGATGCTATATCAATCTTACCATTC 59.234 37.037 0.00 0.00 0.00 2.67
418 419 7.043125 CCGATGCTATATCAATCTTACCATTCG 60.043 40.741 0.00 0.00 0.00 3.34
419 420 7.489435 CGATGCTATATCAATCTTACCATTCGT 59.511 37.037 0.00 0.00 0.00 3.85
422 423 8.803235 TGCTATATCAATCTTACCATTCGTACT 58.197 33.333 0.00 0.00 0.00 2.73
423 424 9.640963 GCTATATCAATCTTACCATTCGTACTT 57.359 33.333 0.00 0.00 0.00 2.24
427 428 5.935206 TCAATCTTACCATTCGTACTTGCAA 59.065 36.000 0.00 0.00 0.00 4.08
428 429 6.597672 TCAATCTTACCATTCGTACTTGCAAT 59.402 34.615 0.00 0.00 0.00 3.56
430 431 6.811253 TCTTACCATTCGTACTTGCAATTT 57.189 33.333 0.00 0.00 0.00 1.82
434 435 5.596845 ACCATTCGTACTTGCAATTTTTGT 58.403 33.333 0.00 0.00 0.00 2.83
435 436 5.689961 ACCATTCGTACTTGCAATTTTTGTC 59.310 36.000 0.00 0.00 0.00 3.18
436 437 5.920273 CCATTCGTACTTGCAATTTTTGTCT 59.080 36.000 0.00 0.00 0.00 3.41
437 438 6.420604 CCATTCGTACTTGCAATTTTTGTCTT 59.579 34.615 0.00 0.00 0.00 3.01
438 439 7.042791 CCATTCGTACTTGCAATTTTTGTCTTT 60.043 33.333 0.00 0.00 0.00 2.52
439 440 6.804534 TCGTACTTGCAATTTTTGTCTTTG 57.195 33.333 0.00 0.00 0.00 2.77
441 442 6.809196 TCGTACTTGCAATTTTTGTCTTTGTT 59.191 30.769 0.00 0.00 0.00 2.83
442 443 6.893995 CGTACTTGCAATTTTTGTCTTTGTTG 59.106 34.615 0.00 0.00 0.00 3.33
443 444 5.630061 ACTTGCAATTTTTGTCTTTGTTGC 58.370 33.333 0.00 0.00 41.53 4.17
446 447 4.094590 TGCAATTTTTGTCTTTGTTGCCAG 59.905 37.500 5.57 0.00 40.73 4.85
447 448 4.590226 CAATTTTTGTCTTTGTTGCCAGC 58.410 39.130 0.00 0.00 0.00 4.85
448 449 3.325293 TTTTTGTCTTTGTTGCCAGCA 57.675 38.095 0.00 0.00 0.00 4.41
449 450 3.325293 TTTTGTCTTTGTTGCCAGCAA 57.675 38.095 0.00 0.00 0.00 3.91
451 452 3.540314 TTGTCTTTGTTGCCAGCAATT 57.460 38.095 8.52 0.00 38.28 2.32
453 454 2.224018 TGTCTTTGTTGCCAGCAATTCC 60.224 45.455 8.52 0.00 38.28 3.01
454 455 2.037901 TCTTTGTTGCCAGCAATTCCA 58.962 42.857 8.52 0.00 38.28 3.53
455 456 2.137523 CTTTGTTGCCAGCAATTCCAC 58.862 47.619 8.52 0.00 38.28 4.02
457 458 1.340088 TGTTGCCAGCAATTCCACAT 58.660 45.000 8.52 0.00 38.28 3.21
458 459 2.523245 TGTTGCCAGCAATTCCACATA 58.477 42.857 8.52 0.00 38.28 2.29
459 460 2.896044 TGTTGCCAGCAATTCCACATAA 59.104 40.909 8.52 0.00 38.28 1.90
460 461 3.056678 TGTTGCCAGCAATTCCACATAAG 60.057 43.478 8.52 0.00 38.28 1.73
462 463 2.754552 TGCCAGCAATTCCACATAAGTC 59.245 45.455 0.00 0.00 0.00 3.01
463 464 2.754552 GCCAGCAATTCCACATAAGTCA 59.245 45.455 0.00 0.00 0.00 3.41
464 465 3.382546 GCCAGCAATTCCACATAAGTCAT 59.617 43.478 0.00 0.00 0.00 3.06
465 466 4.142093 GCCAGCAATTCCACATAAGTCATT 60.142 41.667 0.00 0.00 0.00 2.57
466 467 5.625197 GCCAGCAATTCCACATAAGTCATTT 60.625 40.000 0.00 0.00 0.00 2.32
467 468 6.400568 CCAGCAATTCCACATAAGTCATTTT 58.599 36.000 0.00 0.00 0.00 1.82
468 469 6.311935 CCAGCAATTCCACATAAGTCATTTTG 59.688 38.462 0.00 0.00 0.00 2.44
469 470 6.869913 CAGCAATTCCACATAAGTCATTTTGT 59.130 34.615 0.00 0.00 31.67 2.83
470 471 7.062605 CAGCAATTCCACATAAGTCATTTTGTC 59.937 37.037 0.00 0.00 29.40 3.18
471 472 6.311200 GCAATTCCACATAAGTCATTTTGTCC 59.689 38.462 0.00 0.00 29.40 4.02
472 473 5.975693 TTCCACATAAGTCATTTTGTCCC 57.024 39.130 0.00 0.00 29.40 4.46
473 474 4.006989 TCCACATAAGTCATTTTGTCCCG 58.993 43.478 0.00 0.00 29.40 5.14
475 476 4.457603 CCACATAAGTCATTTTGTCCCGAA 59.542 41.667 0.00 0.00 29.40 4.30
477 478 5.856455 CACATAAGTCATTTTGTCCCGAAAC 59.144 40.000 0.00 0.00 29.40 2.78
478 479 5.768164 ACATAAGTCATTTTGTCCCGAAACT 59.232 36.000 0.00 0.00 0.00 2.66
479 480 6.264518 ACATAAGTCATTTTGTCCCGAAACTT 59.735 34.615 0.00 0.00 0.00 2.66
480 481 5.592104 AAGTCATTTTGTCCCGAAACTTT 57.408 34.783 0.00 0.00 0.00 2.66
481 482 6.702716 AAGTCATTTTGTCCCGAAACTTTA 57.297 33.333 0.00 0.00 0.00 1.85
482 483 6.068473 AGTCATTTTGTCCCGAAACTTTAC 57.932 37.500 0.00 0.00 0.00 2.01
485 486 6.362283 GTCATTTTGTCCCGAAACTTTACATG 59.638 38.462 0.00 0.00 0.00 3.21
487 488 4.822036 TTGTCCCGAAACTTTACATGTG 57.178 40.909 9.11 0.00 0.00 3.21
488 489 4.074627 TGTCCCGAAACTTTACATGTGA 57.925 40.909 9.11 0.00 0.00 3.58
489 490 4.452825 TGTCCCGAAACTTTACATGTGAA 58.547 39.130 9.11 5.63 0.00 3.18
490 491 5.067273 TGTCCCGAAACTTTACATGTGAAT 58.933 37.500 9.11 0.00 0.00 2.57
491 492 6.231951 TGTCCCGAAACTTTACATGTGAATA 58.768 36.000 9.11 0.00 0.00 1.75
492 493 6.711194 TGTCCCGAAACTTTACATGTGAATAA 59.289 34.615 9.11 0.00 0.00 1.40
493 494 7.392113 TGTCCCGAAACTTTACATGTGAATAAT 59.608 33.333 9.11 0.00 0.00 1.28
494 495 8.241367 GTCCCGAAACTTTACATGTGAATAATT 58.759 33.333 9.11 2.12 0.00 1.40
495 496 8.455682 TCCCGAAACTTTACATGTGAATAATTC 58.544 33.333 9.11 9.97 0.00 2.17
507 508 8.400947 ACATGTGAATAATTCAGTAGACAATGC 58.599 33.333 0.00 0.00 41.01 3.56
508 509 8.618677 CATGTGAATAATTCAGTAGACAATGCT 58.381 33.333 0.00 0.00 41.01 3.79
510 511 8.453320 TGTGAATAATTCAGTAGACAATGCTTG 58.547 33.333 0.00 0.00 41.01 4.01
511 512 8.454106 GTGAATAATTCAGTAGACAATGCTTGT 58.546 33.333 1.82 1.82 43.26 3.16
512 513 9.013229 TGAATAATTCAGTAGACAATGCTTGTT 57.987 29.630 3.56 0.00 38.27 2.83
513 514 9.495754 GAATAATTCAGTAGACAATGCTTGTTC 57.504 33.333 3.56 0.00 45.52 3.18
514 515 5.886960 ATTCAGTAGACAATGCTTGTTCC 57.113 39.130 3.56 0.00 45.52 3.62
515 516 4.623932 TCAGTAGACAATGCTTGTTCCT 57.376 40.909 3.56 1.09 45.52 3.36
516 517 4.973168 TCAGTAGACAATGCTTGTTCCTT 58.027 39.130 3.56 0.00 45.52 3.36
519 520 6.321181 TCAGTAGACAATGCTTGTTCCTTTTT 59.679 34.615 3.56 0.00 45.52 1.94
533 534 3.259930 TTTTTGCGCGCCTAGTCC 58.740 55.556 30.77 0.00 0.00 3.85
534 535 1.598407 TTTTTGCGCGCCTAGTCCA 60.598 52.632 30.77 4.37 0.00 4.02
535 536 1.573829 TTTTTGCGCGCCTAGTCCAG 61.574 55.000 30.77 0.00 0.00 3.86
536 537 2.725203 TTTTGCGCGCCTAGTCCAGT 62.725 55.000 30.77 0.00 0.00 4.00
537 538 2.725203 TTTGCGCGCCTAGTCCAGTT 62.725 55.000 30.77 0.00 0.00 3.16
541 542 1.295423 GCGCCTAGTCCAGTTTCCA 59.705 57.895 0.00 0.00 0.00 3.53
542 543 0.321298 GCGCCTAGTCCAGTTTCCAA 60.321 55.000 0.00 0.00 0.00 3.53
546 547 3.506067 CGCCTAGTCCAGTTTCCAAAAAT 59.494 43.478 0.00 0.00 0.00 1.82
548 549 4.082190 GCCTAGTCCAGTTTCCAAAAATCC 60.082 45.833 0.00 0.00 0.00 3.01
549 550 4.156008 CCTAGTCCAGTTTCCAAAAATCCG 59.844 45.833 0.00 0.00 0.00 4.18
551 552 2.035321 GTCCAGTTTCCAAAAATCCGCA 59.965 45.455 0.00 0.00 0.00 5.69
552 553 2.035321 TCCAGTTTCCAAAAATCCGCAC 59.965 45.455 0.00 0.00 0.00 5.34
553 554 2.403259 CAGTTTCCAAAAATCCGCACC 58.597 47.619 0.00 0.00 0.00 5.01
555 556 0.319125 TTTCCAAAAATCCGCACCGC 60.319 50.000 0.00 0.00 0.00 5.68
556 557 1.456196 TTCCAAAAATCCGCACCGCA 61.456 50.000 0.00 0.00 0.00 5.69
557 558 1.215117 CCAAAAATCCGCACCGCAT 59.785 52.632 0.00 0.00 0.00 4.73
560 561 0.817013 AAAAATCCGCACCGCATGAT 59.183 45.000 0.00 0.00 0.00 2.45
561 562 0.381801 AAAATCCGCACCGCATGATC 59.618 50.000 0.00 0.00 0.00 2.92
562 563 0.464373 AAATCCGCACCGCATGATCT 60.464 50.000 0.00 0.00 0.00 2.75
564 565 2.315781 ATCCGCACCGCATGATCTGT 62.316 55.000 0.00 0.00 0.00 3.41
565 566 2.108514 CCGCACCGCATGATCTGTT 61.109 57.895 0.00 0.00 0.00 3.16
566 567 1.647545 CCGCACCGCATGATCTGTTT 61.648 55.000 0.00 0.00 0.00 2.83
567 568 1.006086 CGCACCGCATGATCTGTTTA 58.994 50.000 0.00 0.00 0.00 2.01
572 573 2.092429 ACCGCATGATCTGTTTACCCAT 60.092 45.455 0.00 0.00 0.00 4.00
573 574 3.135712 ACCGCATGATCTGTTTACCCATA 59.864 43.478 0.00 0.00 0.00 2.74
576 577 4.756642 CGCATGATCTGTTTACCCATATGT 59.243 41.667 0.00 0.00 0.00 2.29
577 578 5.239306 CGCATGATCTGTTTACCCATATGTT 59.761 40.000 0.00 0.00 0.00 2.71
578 579 6.238731 CGCATGATCTGTTTACCCATATGTTT 60.239 38.462 0.00 0.00 0.00 2.83
579 580 7.491682 GCATGATCTGTTTACCCATATGTTTT 58.508 34.615 0.00 0.00 0.00 2.43
581 582 8.906867 CATGATCTGTTTACCCATATGTTTTCT 58.093 33.333 1.24 0.00 0.00 2.52
583 584 7.556275 TGATCTGTTTACCCATATGTTTTCTCC 59.444 37.037 1.24 0.00 0.00 3.71
584 585 6.785076 TCTGTTTACCCATATGTTTTCTCCA 58.215 36.000 1.24 0.00 0.00 3.86
585 586 7.235079 TCTGTTTACCCATATGTTTTCTCCAA 58.765 34.615 1.24 0.00 0.00 3.53
586 587 7.893302 TCTGTTTACCCATATGTTTTCTCCAAT 59.107 33.333 1.24 0.00 0.00 3.16
587 588 8.062065 TGTTTACCCATATGTTTTCTCCAATC 57.938 34.615 1.24 0.00 0.00 2.67
588 589 7.671819 TGTTTACCCATATGTTTTCTCCAATCA 59.328 33.333 1.24 0.00 0.00 2.57
589 590 8.695456 GTTTACCCATATGTTTTCTCCAATCAT 58.305 33.333 1.24 0.00 0.00 2.45
590 591 6.966534 ACCCATATGTTTTCTCCAATCATC 57.033 37.500 1.24 0.00 0.00 2.92
591 592 5.835280 ACCCATATGTTTTCTCCAATCATCC 59.165 40.000 1.24 0.00 0.00 3.51
592 593 5.834742 CCCATATGTTTTCTCCAATCATCCA 59.165 40.000 1.24 0.00 0.00 3.41
602 603 2.366590 TCCAATCATCCAGGTCGATCTG 59.633 50.000 19.14 19.14 34.70 2.90
604 605 1.714541 ATCATCCAGGTCGATCTGCT 58.285 50.000 20.64 6.67 33.64 4.24
629 630 2.885113 CGGGCACAGACGAGATGA 59.115 61.111 0.00 0.00 0.00 2.92
635 636 2.257894 GCACAGACGAGATGAACTCAG 58.742 52.381 0.00 0.00 45.14 3.35
718 723 2.400798 CCGATCACGTGCATGCAC 59.599 61.111 35.76 35.76 43.01 4.57
758 764 2.186903 CGTCCCAATCTCCGGTGG 59.813 66.667 0.00 0.55 34.44 4.61
914 943 4.640771 TTGTTCTCTTCCATTGTAGCCT 57.359 40.909 0.00 0.00 0.00 4.58
915 944 4.207891 TGTTCTCTTCCATTGTAGCCTC 57.792 45.455 0.00 0.00 0.00 4.70
916 945 3.055094 TGTTCTCTTCCATTGTAGCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
917 946 2.119495 TCTCTTCCATTGTAGCCTCCC 58.881 52.381 0.00 0.00 0.00 4.30
920 949 1.141858 CTTCCATTGTAGCCTCCCCTC 59.858 57.143 0.00 0.00 0.00 4.30
921 950 0.343372 TCCATTGTAGCCTCCCCTCT 59.657 55.000 0.00 0.00 0.00 3.69
923 952 1.974236 CCATTGTAGCCTCCCCTCTAG 59.026 57.143 0.00 0.00 0.00 2.43
925 954 0.398664 TTGTAGCCTCCCCTCTAGCC 60.399 60.000 0.00 0.00 0.00 3.93
926 955 1.297409 TGTAGCCTCCCCTCTAGCCT 61.297 60.000 0.00 0.00 0.00 4.58
927 956 0.541063 GTAGCCTCCCCTCTAGCCTC 60.541 65.000 0.00 0.00 0.00 4.70
929 958 2.202899 CCTCCCCTCTAGCCTCCC 59.797 72.222 0.00 0.00 0.00 4.30
931 960 1.155155 CTCCCCTCTAGCCTCCCTC 59.845 68.421 0.00 0.00 0.00 4.30
932 961 2.202899 CCCCTCTAGCCTCCCTCC 59.797 72.222 0.00 0.00 0.00 4.30
933 962 2.202899 CCCTCTAGCCTCCCTCCC 59.797 72.222 0.00 0.00 0.00 4.30
934 963 2.202899 CCTCTAGCCTCCCTCCCC 59.797 72.222 0.00 0.00 0.00 4.81
935 964 2.202899 CTCTAGCCTCCCTCCCCC 59.797 72.222 0.00 0.00 0.00 5.40
1046 1075 3.849953 GTCGTCGTTCATGGCGCC 61.850 66.667 22.73 22.73 0.00 6.53
1114 1143 4.148825 CGGAGGCCAGGAAGTCCG 62.149 72.222 13.72 13.72 45.48 4.79
1115 1144 3.787001 GGAGGCCAGGAAGTCCGG 61.787 72.222 5.01 0.00 42.08 5.14
1214 1243 3.194861 TCAAAGGTGAGAGTGAAACACG 58.805 45.455 0.00 0.00 41.43 4.49
1228 1257 2.202388 CACGCGGCATGCTCTTTG 60.202 61.111 18.92 6.58 43.27 2.77
1234 1263 2.202570 GCATGCTCTTTGCGGCTG 60.203 61.111 11.37 0.00 46.63 4.85
1238 1267 4.410743 GCTCTTTGCGGCTGCCAC 62.411 66.667 20.29 10.02 41.78 5.01
1245 1275 1.795170 TTGCGGCTGCCACTCTTTTC 61.795 55.000 20.29 0.00 41.78 2.29
1260 1290 2.065906 TTTTCCAACGCCGTCTTGCC 62.066 55.000 0.00 0.00 0.00 4.52
1277 1307 1.303888 CCCTGCATTGCACTCTGGT 60.304 57.895 7.38 0.00 33.79 4.00
1281 1321 2.557924 CCTGCATTGCACTCTGGTTTAA 59.442 45.455 7.38 0.00 33.79 1.52
1292 1332 4.082125 ACTCTGGTTTAATTTGCTCTGGG 58.918 43.478 0.00 0.00 0.00 4.45
1355 1400 3.820557 TCAACTACTTCCTGCTTTGCTT 58.179 40.909 0.00 0.00 0.00 3.91
1356 1401 4.207165 TCAACTACTTCCTGCTTTGCTTT 58.793 39.130 0.00 0.00 0.00 3.51
1358 1403 2.294512 ACTACTTCCTGCTTTGCTTTGC 59.705 45.455 0.00 0.00 0.00 3.68
1359 1404 1.406903 ACTTCCTGCTTTGCTTTGCT 58.593 45.000 0.00 0.00 0.00 3.91
1392 1440 4.216902 CAGCAGATTTGTCAATCACAAGGA 59.783 41.667 0.00 0.00 45.98 3.36
1405 1453 2.266554 CACAAGGAGTGCGAATCTCTC 58.733 52.381 0.00 0.00 42.15 3.20
1451 1507 5.715753 TGCCGTACCCTTTTATTGGTTTTAT 59.284 36.000 0.00 0.00 36.04 1.40
1454 1510 8.415553 GCCGTACCCTTTTATTGGTTTTATTAT 58.584 33.333 0.00 0.00 36.04 1.28
1490 1559 1.877443 ACAAGTTGCTTCGGCGTAAAT 59.123 42.857 6.85 0.00 45.37 1.40
1500 1569 1.195900 TCGGCGTAAATGTGCAGTTTC 59.804 47.619 6.85 0.00 0.00 2.78
1501 1570 1.069568 CGGCGTAAATGTGCAGTTTCA 60.070 47.619 0.00 0.00 0.00 2.69
1502 1571 2.414029 CGGCGTAAATGTGCAGTTTCAT 60.414 45.455 0.00 0.00 0.00 2.57
1503 1572 3.181515 CGGCGTAAATGTGCAGTTTCATA 60.182 43.478 0.00 0.00 0.00 2.15
1504 1573 4.095610 GGCGTAAATGTGCAGTTTCATAC 58.904 43.478 0.59 0.00 0.00 2.39
1505 1574 4.378978 GGCGTAAATGTGCAGTTTCATACA 60.379 41.667 0.59 0.00 0.00 2.29
1507 1811 5.799936 GCGTAAATGTGCAGTTTCATACAAT 59.200 36.000 0.59 0.00 0.00 2.71
1576 1966 7.962918 ACAATATGAAACTTTAAGTCATGACGC 59.037 33.333 19.85 0.00 34.01 5.19
1578 1968 5.940192 TGAAACTTTAAGTCATGACGCAT 57.060 34.783 19.85 12.70 36.20 4.73
1579 1969 5.927030 TGAAACTTTAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
1582 1972 6.648725 AACTTTAAGTCATGACGCATCTAC 57.351 37.500 19.85 0.00 36.20 2.59
1590 1980 5.120986 AGTCATGACGCATCTACTAGTATCG 59.879 44.000 19.85 7.58 36.20 2.92
1591 1981 5.120363 GTCATGACGCATCTACTAGTATCGA 59.880 44.000 10.69 0.00 0.00 3.59
1595 1985 6.600350 TGACGCATCTACTAGTATCGATTTC 58.400 40.000 1.71 0.00 0.00 2.17
1596 1986 6.204108 TGACGCATCTACTAGTATCGATTTCA 59.796 38.462 1.71 4.09 0.00 2.69
1599 1989 7.024171 CGCATCTACTAGTATCGATTTCACAT 58.976 38.462 1.71 0.00 0.00 3.21
1601 1991 8.642885 GCATCTACTAGTATCGATTTCACATTG 58.357 37.037 1.71 0.00 0.00 2.82
1603 1993 9.684448 ATCTACTAGTATCGATTTCACATTGTG 57.316 33.333 10.64 10.64 34.45 3.33
1646 2036 9.199982 TCTATAAACTTGGTCAAACTTTACGAG 57.800 33.333 0.00 0.00 0.00 4.18
1647 2037 5.494632 AAACTTGGTCAAACTTTACGAGG 57.505 39.130 0.00 0.00 0.00 4.63
1648 2038 2.876550 ACTTGGTCAAACTTTACGAGGC 59.123 45.455 0.00 0.00 0.00 4.70
1652 2042 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
1660 2134 3.299340 TTACGAGGCTTGACTTCAGAC 57.701 47.619 9.20 0.00 0.00 3.51
1665 2139 3.124297 CGAGGCTTGACTTCAGACAAATC 59.876 47.826 0.00 0.00 30.22 2.17
1667 2141 5.482908 GAGGCTTGACTTCAGACAAATCTA 58.517 41.667 0.00 0.00 32.25 1.98
1670 2144 7.624549 AGGCTTGACTTCAGACAAATCTAATA 58.375 34.615 0.00 0.00 32.25 0.98
1672 2146 8.341173 GGCTTGACTTCAGACAAATCTAATATG 58.659 37.037 0.00 0.00 32.25 1.78
1673 2147 7.854916 GCTTGACTTCAGACAAATCTAATATGC 59.145 37.037 0.00 0.00 32.25 3.14
1674 2148 7.468922 TGACTTCAGACAAATCTAATATGCG 57.531 36.000 0.00 0.00 32.25 4.73
1676 2150 7.763985 TGACTTCAGACAAATCTAATATGCGAA 59.236 33.333 0.00 0.00 32.25 4.70
1677 2151 7.910304 ACTTCAGACAAATCTAATATGCGAAC 58.090 34.615 0.00 0.00 32.25 3.95
1678 2152 7.766278 ACTTCAGACAAATCTAATATGCGAACT 59.234 33.333 0.00 0.00 32.25 3.01
1679 2153 9.249457 CTTCAGACAAATCTAATATGCGAACTA 57.751 33.333 0.00 0.00 32.25 2.24
1681 2155 9.594478 TCAGACAAATCTAATATGCGAACTAAA 57.406 29.630 0.00 0.00 32.25 1.85
1689 2163 5.479716 AATATGCGAACTAAAAAGGACCG 57.520 39.130 0.00 0.00 0.00 4.79
1690 2164 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
1691 2165 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
1692 2166 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
1721 2247 8.580720 AGTACACTAGAATGTTATGCCTGATAG 58.419 37.037 0.00 0.00 33.85 2.08
1740 2302 1.840635 AGGAACCCAAGAGGCATACTC 59.159 52.381 0.00 0.00 46.98 2.59
1772 2334 5.425217 TGGACAGAATAACAATCCAGAGCTA 59.575 40.000 0.00 0.00 34.50 3.32
1792 2354 1.647346 AAAAATGATGCCTGCATGCG 58.353 45.000 14.09 7.87 36.70 4.73
1793 2355 0.533491 AAAATGATGCCTGCATGCGT 59.467 45.000 14.09 8.55 36.70 5.24
1794 2356 0.179121 AAATGATGCCTGCATGCGTG 60.179 50.000 13.77 7.59 36.70 5.34
1814 2376 2.946990 TGTATGATCAGCACAGGCATTG 59.053 45.455 0.09 0.00 44.61 2.82
1815 2377 0.744874 ATGATCAGCACAGGCATTGC 59.255 50.000 0.09 0.00 44.61 3.56
1816 2378 1.063649 GATCAGCACAGGCATTGCG 59.936 57.895 1.91 0.00 45.15 4.85
1817 2379 2.931713 GATCAGCACAGGCATTGCGC 62.932 60.000 0.00 0.00 45.15 6.09
1847 2410 5.945191 TGATCTGAATAATGTTGGCACTTCA 59.055 36.000 0.00 0.00 0.00 3.02
1898 2466 5.091910 ACGTTGCTACTTAAACTTTCAGC 57.908 39.130 0.00 0.00 0.00 4.26
1899 2467 4.024302 ACGTTGCTACTTAAACTTTCAGCC 60.024 41.667 0.00 0.00 0.00 4.85
1902 2470 6.504398 GTTGCTACTTAAACTTTCAGCCTTT 58.496 36.000 0.00 0.00 0.00 3.11
1903 2471 6.313744 TGCTACTTAAACTTTCAGCCTTTC 57.686 37.500 0.00 0.00 0.00 2.62
1904 2472 5.825679 TGCTACTTAAACTTTCAGCCTTTCA 59.174 36.000 0.00 0.00 0.00 2.69
1938 2512 6.127479 GCAATGAACCCATAACCAGATTAACA 60.127 38.462 0.00 0.00 31.59 2.41
1939 2513 7.257722 CAATGAACCCATAACCAGATTAACAC 58.742 38.462 0.00 0.00 31.59 3.32
2006 2580 1.523758 ACCGCAATGAACTCTGAACC 58.476 50.000 0.00 0.00 0.00 3.62
2019 2593 1.274167 TCTGAACCAGATTAACGCCGT 59.726 47.619 0.00 0.00 35.39 5.68
2025 2599 2.231964 ACCAGATTAACGCCGTGACTTA 59.768 45.455 0.00 0.00 0.00 2.24
2035 2649 1.594862 GCCGTGACTTAGCAGCAATAG 59.405 52.381 0.00 0.00 0.00 1.73
2043 2657 5.047021 TGACTTAGCAGCAATAGTTCAGACT 60.047 40.000 0.00 0.00 39.97 3.24
2047 2661 2.935201 GCAGCAATAGTTCAGACTCTGG 59.065 50.000 6.20 0.00 37.33 3.86
2073 2687 2.512692 TACCCGGCACTAACAGTAGA 57.487 50.000 0.00 0.00 0.00 2.59
2098 2712 2.153645 TCTGTGGTGTGAATGTGATGC 58.846 47.619 0.00 0.00 0.00 3.91
2447 3062 3.426568 GCAAGCTCTGCCACGACC 61.427 66.667 9.03 0.00 46.13 4.79
2448 3063 2.031012 CAAGCTCTGCCACGACCA 59.969 61.111 0.00 0.00 0.00 4.02
2461 3076 3.799755 GACCACGGCGATGGCAAC 61.800 66.667 22.50 13.47 44.33 4.17
2474 3089 4.557942 GCAACGGCCAAGACAATG 57.442 55.556 2.24 0.00 0.00 2.82
2475 3090 1.080569 GCAACGGCCAAGACAATGG 60.081 57.895 2.24 0.00 43.70 3.16
2481 3096 2.879907 CCAAGACAATGGCGGCAG 59.120 61.111 19.29 7.31 32.78 4.85
2482 3097 2.180017 CAAGACAATGGCGGCAGC 59.820 61.111 19.29 0.00 44.18 5.25
2782 3400 0.108424 CGGCTTCAGAACCTCAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
2818 3436 0.820226 GGGATTTCAGCCTTCTTGCC 59.180 55.000 0.00 0.00 0.00 4.52
2923 3541 3.738982 TGTTCGTTGACCTGATGAATGT 58.261 40.909 0.00 0.00 0.00 2.71
2925 3543 4.688879 TGTTCGTTGACCTGATGAATGTAC 59.311 41.667 0.00 0.00 0.00 2.90
2930 3548 5.582269 CGTTGACCTGATGAATGTACTCATT 59.418 40.000 0.00 0.00 45.57 2.57
2946 3564 8.915871 TGTACTCATTTGGTACTAATTCGTAC 57.084 34.615 10.94 10.94 39.89 3.67
2947 3565 8.742777 TGTACTCATTTGGTACTAATTCGTACT 58.257 33.333 17.02 0.00 39.67 2.73
2948 3566 9.230932 GTACTCATTTGGTACTAATTCGTACTC 57.769 37.037 17.02 9.76 39.67 2.59
2949 3567 7.263496 ACTCATTTGGTACTAATTCGTACTCC 58.737 38.462 17.02 5.36 39.67 3.85
2950 3568 7.123847 ACTCATTTGGTACTAATTCGTACTCCT 59.876 37.037 17.02 1.54 39.67 3.69
2951 3569 8.523915 TCATTTGGTACTAATTCGTACTCCTA 57.476 34.615 17.02 4.59 39.67 2.94
2976 3594 7.293073 AGTCATGATAATTATTGGCCTTGTCT 58.707 34.615 3.32 0.00 0.00 3.41
3032 3650 2.037121 CGATGGGATAGGTGCACACATA 59.963 50.000 20.43 8.62 31.82 2.29
3061 3679 2.805099 CCGATTGCTGGAAATAGAGCTC 59.195 50.000 5.27 5.27 36.11 4.09
3161 3779 6.089150 GCAAGCTCTATCTTTTTCTTTTGCAG 59.911 38.462 0.00 0.00 37.65 4.41
3182 3800 2.859981 AAAGGCCAGCTTTGCGTGG 61.860 57.895 5.01 0.00 36.85 4.94
3227 3845 8.380742 ACTAAGATATTTTTCAGAGGGACAGA 57.619 34.615 0.00 0.00 0.00 3.41
3228 3846 8.261522 ACTAAGATATTTTTCAGAGGGACAGAC 58.738 37.037 0.00 0.00 0.00 3.51
3229 3847 6.627087 AGATATTTTTCAGAGGGACAGACA 57.373 37.500 0.00 0.00 0.00 3.41
3230 3848 6.648192 AGATATTTTTCAGAGGGACAGACAG 58.352 40.000 0.00 0.00 0.00 3.51
3231 3849 3.492102 TTTTTCAGAGGGACAGACAGG 57.508 47.619 0.00 0.00 0.00 4.00
3232 3850 2.398754 TTTCAGAGGGACAGACAGGA 57.601 50.000 0.00 0.00 0.00 3.86
3233 3851 2.630889 TTCAGAGGGACAGACAGGAT 57.369 50.000 0.00 0.00 0.00 3.24
3234 3852 1.857965 TCAGAGGGACAGACAGGATG 58.142 55.000 0.00 0.00 46.00 3.51
3235 3853 0.829333 CAGAGGGACAGACAGGATGG 59.171 60.000 0.00 0.00 43.62 3.51
3309 4052 2.405357 GTCAGTCAGTTTCATGTCGACG 59.595 50.000 11.62 0.00 0.00 5.12
3310 4053 2.292292 TCAGTCAGTTTCATGTCGACGA 59.708 45.455 11.62 0.00 0.00 4.20
3311 4054 2.405357 CAGTCAGTTTCATGTCGACGAC 59.595 50.000 20.97 20.97 0.00 4.34
3334 4077 3.808834 TCGCTCCCTGAATATCTCCTA 57.191 47.619 0.00 0.00 0.00 2.94
3347 4090 0.895530 TCTCCTAGTTGGCCAAGACG 59.104 55.000 21.21 9.64 35.26 4.18
3358 4101 2.237143 TGGCCAAGACGATTCAGAATCT 59.763 45.455 19.05 7.92 35.73 2.40
3370 4113 2.121948 TCAGAATCTGACATGGGGAGG 58.878 52.381 9.18 0.00 35.39 4.30
3382 4125 1.072159 GGGGAGGCCATCTTCATCG 59.928 63.158 5.01 0.00 0.00 3.84
3385 4128 0.250081 GGAGGCCATCTTCATCGACC 60.250 60.000 5.01 0.00 0.00 4.79
3389 4132 0.659957 GCCATCTTCATCGACCTTGC 59.340 55.000 0.00 0.00 0.00 4.01
3394 4137 1.372087 CTTCATCGACCTTGCTGCCC 61.372 60.000 0.00 0.00 0.00 5.36
3403 4189 1.638589 ACCTTGCTGCCCCAATAGTAA 59.361 47.619 0.00 0.00 0.00 2.24
3408 4194 2.438021 TGCTGCCCCAATAGTAACTAGG 59.562 50.000 0.00 0.00 0.00 3.02
3411 4197 2.775384 TGCCCCAATAGTAACTAGGTGG 59.225 50.000 0.00 0.00 0.00 4.61
3416 4202 5.123936 CCCAATAGTAACTAGGTGGCTTTC 58.876 45.833 0.00 0.00 0.00 2.62
3418 4204 6.415573 CCAATAGTAACTAGGTGGCTTTCTT 58.584 40.000 0.00 0.00 0.00 2.52
3426 4212 5.334421 ACTAGGTGGCTTTCTTTCTCTCTA 58.666 41.667 0.00 0.00 0.00 2.43
3428 4214 7.126733 ACTAGGTGGCTTTCTTTCTCTCTATA 58.873 38.462 0.00 0.00 0.00 1.31
3429 4215 6.875972 AGGTGGCTTTCTTTCTCTCTATAA 57.124 37.500 0.00 0.00 0.00 0.98
3430 4216 7.444703 AGGTGGCTTTCTTTCTCTCTATAAT 57.555 36.000 0.00 0.00 0.00 1.28
3432 4218 8.332487 AGGTGGCTTTCTTTCTCTCTATAATTT 58.668 33.333 0.00 0.00 0.00 1.82
3466 4257 4.793201 TGGTCTTCTCTAAGATCATCCGA 58.207 43.478 0.00 0.00 45.82 4.55
3484 4276 3.063452 TCCGAAGTAATCTTTTGCGATGC 59.937 43.478 0.00 0.00 33.64 3.91
3486 4278 2.778386 GAAGTAATCTTTTGCGATGCGC 59.222 45.455 0.00 0.00 42.77 6.09
3499 4291 1.372582 GATGCGCTTGTTGAGATCCA 58.627 50.000 9.73 0.00 0.00 3.41
3508 4300 4.565564 GCTTGTTGAGATCCAATGAATTGC 59.434 41.667 0.00 0.00 37.08 3.56
3510 4302 4.009002 TGTTGAGATCCAATGAATTGCGA 58.991 39.130 0.00 0.00 37.08 5.10
3511 4303 4.142622 TGTTGAGATCCAATGAATTGCGAC 60.143 41.667 0.00 0.00 37.08 5.19
3521 4313 5.916883 CCAATGAATTGCGACTTTATGATCC 59.083 40.000 0.00 0.00 36.48 3.36
3572 4364 3.323243 TGAGCCTTCTTTACTGCGTAAC 58.677 45.455 1.47 0.00 0.00 2.50
3641 4433 8.299570 GCCAAGTTAGATTGATTTTTCTTCAGA 58.700 33.333 0.00 0.00 31.55 3.27
3670 4465 5.105146 TGCTTTGTGGTAGGTTCAATTTTGT 60.105 36.000 0.00 0.00 0.00 2.83
3673 4468 3.068873 TGTGGTAGGTTCAATTTTGTGGC 59.931 43.478 0.00 0.00 0.00 5.01
3689 4484 0.977627 TGGCGATCCTGTCCACTGAT 60.978 55.000 0.00 0.00 0.00 2.90
3698 4493 4.425772 TCCTGTCCACTGATAGAAAGGAA 58.574 43.478 0.00 0.00 31.79 3.36
3701 4496 6.012508 TCCTGTCCACTGATAGAAAGGAAAAT 60.013 38.462 0.00 0.00 31.79 1.82
3746 4541 3.673543 AAGGATAAAATGGCGGGGTTA 57.326 42.857 0.00 0.00 0.00 2.85
3747 4542 3.895704 AGGATAAAATGGCGGGGTTAT 57.104 42.857 0.00 0.00 0.00 1.89
3748 4543 5.327737 AAGGATAAAATGGCGGGGTTATA 57.672 39.130 0.00 0.00 0.00 0.98
3749 4544 5.530176 AGGATAAAATGGCGGGGTTATAT 57.470 39.130 0.00 0.00 0.00 0.86
3750 4545 5.899278 AGGATAAAATGGCGGGGTTATATT 58.101 37.500 0.00 0.00 0.00 1.28
3751 4546 5.714806 AGGATAAAATGGCGGGGTTATATTG 59.285 40.000 0.00 0.00 0.00 1.90
3752 4547 5.712917 GGATAAAATGGCGGGGTTATATTGA 59.287 40.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 1.079612 CGCCTGATGAGTGCAGACA 60.080 57.895 0.00 0.00 35.39 3.41
118 119 2.459442 GCGCCTGATGAGTGCAGAC 61.459 63.158 0.00 0.00 40.47 3.51
119 120 2.125391 GCGCCTGATGAGTGCAGA 60.125 61.111 0.00 0.00 40.47 4.26
125 126 0.882042 AATTAGCCGCGCCTGATGAG 60.882 55.000 0.00 0.00 0.00 2.90
126 127 0.391228 TAATTAGCCGCGCCTGATGA 59.609 50.000 0.00 0.00 0.00 2.92
127 128 1.069906 GTTAATTAGCCGCGCCTGATG 60.070 52.381 0.00 0.00 0.00 3.07
129 130 0.108089 TGTTAATTAGCCGCGCCTGA 60.108 50.000 0.00 0.00 0.00 3.86
130 131 0.730265 TTGTTAATTAGCCGCGCCTG 59.270 50.000 0.00 0.00 0.00 4.85
134 135 3.546020 CCAGATGTTGTTAATTAGCCGCG 60.546 47.826 0.00 0.00 0.00 6.46
135 136 3.792124 GCCAGATGTTGTTAATTAGCCGC 60.792 47.826 0.00 0.00 0.00 6.53
136 137 3.243068 GGCCAGATGTTGTTAATTAGCCG 60.243 47.826 0.00 0.00 0.00 5.52
137 138 3.954258 AGGCCAGATGTTGTTAATTAGCC 59.046 43.478 5.01 0.00 36.92 3.93
138 139 6.055588 TCTAGGCCAGATGTTGTTAATTAGC 58.944 40.000 5.01 0.00 0.00 3.09
139 140 6.708054 CCTCTAGGCCAGATGTTGTTAATTAG 59.292 42.308 5.01 0.00 31.13 1.73
141 142 5.191722 TCCTCTAGGCCAGATGTTGTTAATT 59.808 40.000 5.01 0.00 31.13 1.40
143 144 4.101114 TCCTCTAGGCCAGATGTTGTTAA 58.899 43.478 5.01 0.00 31.13 2.01
144 145 3.719871 TCCTCTAGGCCAGATGTTGTTA 58.280 45.455 5.01 0.00 31.13 2.41
145 146 2.551270 TCCTCTAGGCCAGATGTTGTT 58.449 47.619 5.01 0.00 31.13 2.83
148 149 2.053244 CCATCCTCTAGGCCAGATGTT 58.947 52.381 5.01 0.00 35.42 2.71
149 150 1.221523 TCCATCCTCTAGGCCAGATGT 59.778 52.381 5.01 0.00 35.42 3.06
150 151 1.622811 GTCCATCCTCTAGGCCAGATG 59.377 57.143 5.01 9.00 36.66 2.90
151 152 1.507300 AGTCCATCCTCTAGGCCAGAT 59.493 52.381 5.01 0.00 31.13 2.90
152 153 0.937441 AGTCCATCCTCTAGGCCAGA 59.063 55.000 5.01 5.02 34.44 3.86
153 154 2.685106 TAGTCCATCCTCTAGGCCAG 57.315 55.000 5.01 0.00 34.44 4.85
154 155 3.414759 TTTAGTCCATCCTCTAGGCCA 57.585 47.619 5.01 0.00 34.44 5.36
178 179 3.887716 ACAAAGTTGCTTCAGCTCAGATT 59.112 39.130 0.00 0.00 42.66 2.40
180 181 2.923121 ACAAAGTTGCTTCAGCTCAGA 58.077 42.857 0.00 0.00 42.66 3.27
181 182 3.705043 AACAAAGTTGCTTCAGCTCAG 57.295 42.857 0.00 0.00 42.66 3.35
182 183 3.443329 TGAAACAAAGTTGCTTCAGCTCA 59.557 39.130 5.90 0.00 38.08 4.26
184 185 4.454728 TTGAAACAAAGTTGCTTCAGCT 57.545 36.364 9.20 0.00 42.22 4.24
185 186 4.805192 TGATTGAAACAAAGTTGCTTCAGC 59.195 37.500 9.20 7.27 42.22 4.26
186 187 5.232838 GGTGATTGAAACAAAGTTGCTTCAG 59.767 40.000 9.20 0.00 42.22 3.02
187 188 5.105392 AGGTGATTGAAACAAAGTTGCTTCA 60.105 36.000 5.90 5.90 40.36 3.02
188 189 5.351458 AGGTGATTGAAACAAAGTTGCTTC 58.649 37.500 1.12 1.12 34.68 3.86
189 190 5.343307 AGGTGATTGAAACAAAGTTGCTT 57.657 34.783 0.00 0.00 0.00 3.91
190 191 5.343307 AAGGTGATTGAAACAAAGTTGCT 57.657 34.783 0.00 0.00 0.00 3.91
191 192 6.250089 CAAAAGGTGATTGAAACAAAGTTGC 58.750 36.000 0.00 0.00 0.00 4.17
192 193 6.092533 AGCAAAAGGTGATTGAAACAAAGTTG 59.907 34.615 0.00 0.00 0.00 3.16
193 194 6.172630 AGCAAAAGGTGATTGAAACAAAGTT 58.827 32.000 0.00 0.00 0.00 2.66
194 195 5.733676 AGCAAAAGGTGATTGAAACAAAGT 58.266 33.333 0.00 0.00 0.00 2.66
195 196 6.667007 AAGCAAAAGGTGATTGAAACAAAG 57.333 33.333 0.00 0.00 33.61 2.77
204 205 4.111916 CGTCAAACAAGCAAAAGGTGATT 58.888 39.130 0.00 0.00 35.84 2.57
205 206 3.705604 CGTCAAACAAGCAAAAGGTGAT 58.294 40.909 0.00 0.00 0.00 3.06
206 207 2.733858 GCGTCAAACAAGCAAAAGGTGA 60.734 45.455 0.00 0.00 0.00 4.02
207 208 1.587946 GCGTCAAACAAGCAAAAGGTG 59.412 47.619 0.00 0.00 0.00 4.00
208 209 1.797348 CGCGTCAAACAAGCAAAAGGT 60.797 47.619 0.00 0.00 0.00 3.50
209 210 0.845768 CGCGTCAAACAAGCAAAAGG 59.154 50.000 0.00 0.00 0.00 3.11
210 211 1.512771 GACGCGTCAAACAAGCAAAAG 59.487 47.619 33.09 0.00 0.00 2.27
211 212 1.540407 GACGCGTCAAACAAGCAAAA 58.460 45.000 33.09 0.00 0.00 2.44
212 213 0.587737 CGACGCGTCAAACAAGCAAA 60.588 50.000 35.71 0.00 0.00 3.68
214 215 1.422179 TTCGACGCGTCAAACAAGCA 61.422 50.000 35.71 8.87 0.00 3.91
215 216 0.315544 TTTCGACGCGTCAAACAAGC 60.316 50.000 35.71 10.12 0.00 4.01
216 217 2.079941 TTTTCGACGCGTCAAACAAG 57.920 45.000 35.71 19.96 0.00 3.16
217 218 2.741122 ATTTTCGACGCGTCAAACAA 57.259 40.000 35.71 22.63 0.00 2.83
218 219 2.538861 TGTATTTTCGACGCGTCAAACA 59.461 40.909 35.71 24.63 0.00 2.83
219 220 2.892199 GTGTATTTTCGACGCGTCAAAC 59.108 45.455 35.71 22.69 0.00 2.93
221 222 1.456544 GGTGTATTTTCGACGCGTCAA 59.543 47.619 35.71 25.35 0.00 3.18
222 223 1.062258 GGTGTATTTTCGACGCGTCA 58.938 50.000 35.71 21.40 0.00 4.35
223 224 1.343506 AGGTGTATTTTCGACGCGTC 58.656 50.000 28.96 28.96 0.00 5.19
224 225 1.458064 CAAGGTGTATTTTCGACGCGT 59.542 47.619 13.85 13.85 0.00 6.01
225 226 1.201877 CCAAGGTGTATTTTCGACGCG 60.202 52.381 3.53 3.53 0.00 6.01
226 227 1.129811 CCCAAGGTGTATTTTCGACGC 59.870 52.381 0.00 0.00 0.00 5.19
227 228 2.414138 GTCCCAAGGTGTATTTTCGACG 59.586 50.000 0.00 0.00 0.00 5.12
228 229 3.404899 TGTCCCAAGGTGTATTTTCGAC 58.595 45.455 0.00 0.00 0.00 4.20
230 231 4.006989 TCATGTCCCAAGGTGTATTTTCG 58.993 43.478 0.00 0.00 0.00 3.46
231 232 5.010282 ACTCATGTCCCAAGGTGTATTTTC 58.990 41.667 0.00 0.00 0.00 2.29
233 234 4.335416 CACTCATGTCCCAAGGTGTATTT 58.665 43.478 0.00 0.00 0.00 1.40
235 236 2.356125 GCACTCATGTCCCAAGGTGTAT 60.356 50.000 0.00 0.00 0.00 2.29
236 237 1.003118 GCACTCATGTCCCAAGGTGTA 59.997 52.381 0.00 0.00 0.00 2.90
237 238 0.250901 GCACTCATGTCCCAAGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
238 239 1.300971 CGCACTCATGTCCCAAGGTG 61.301 60.000 0.00 0.00 0.00 4.00
239 240 1.003355 CGCACTCATGTCCCAAGGT 60.003 57.895 0.00 0.00 0.00 3.50
240 241 2.401766 GCGCACTCATGTCCCAAGG 61.402 63.158 0.30 0.00 0.00 3.61
243 244 1.746239 CATGCGCACTCATGTCCCA 60.746 57.895 14.90 0.00 39.10 4.37
244 245 3.104766 CATGCGCACTCATGTCCC 58.895 61.111 14.90 0.00 39.10 4.46
248 249 1.765161 CGGGTACATGCGCACTCATG 61.765 60.000 14.90 10.25 46.86 3.07
249 250 1.521457 CGGGTACATGCGCACTCAT 60.521 57.895 14.90 0.02 0.00 2.90
252 253 0.392461 AATTCGGGTACATGCGCACT 60.392 50.000 14.90 2.74 0.00 4.40
253 254 0.248054 CAATTCGGGTACATGCGCAC 60.248 55.000 14.90 0.00 0.00 5.34
255 256 1.298339 GCAATTCGGGTACATGCGC 60.298 57.895 0.00 0.00 0.00 6.09
256 257 0.449786 TTGCAATTCGGGTACATGCG 59.550 50.000 0.00 0.00 39.81 4.73
257 258 2.645730 TTTGCAATTCGGGTACATGC 57.354 45.000 0.00 0.00 37.52 4.06
259 260 6.151985 TGACTATTTTTGCAATTCGGGTACAT 59.848 34.615 0.00 0.00 0.00 2.29
260 261 5.473846 TGACTATTTTTGCAATTCGGGTACA 59.526 36.000 0.00 0.00 0.00 2.90
261 262 5.945155 TGACTATTTTTGCAATTCGGGTAC 58.055 37.500 0.00 0.00 0.00 3.34
300 301 6.127479 ACACTAGACAATGCTTGTTCCAAAAA 60.127 34.615 0.00 0.00 45.52 1.94
301 302 5.359576 ACACTAGACAATGCTTGTTCCAAAA 59.640 36.000 0.00 0.00 45.52 2.44
302 303 4.887071 ACACTAGACAATGCTTGTTCCAAA 59.113 37.500 0.00 0.00 45.52 3.28
304 305 4.085357 ACACTAGACAATGCTTGTTCCA 57.915 40.909 0.00 0.00 45.52 3.53
305 306 5.438761 AAACACTAGACAATGCTTGTTCC 57.561 39.130 0.00 0.00 45.52 3.62
307 308 7.282224 TGAGTAAAACACTAGACAATGCTTGTT 59.718 33.333 0.00 0.00 40.20 2.83
308 309 6.765989 TGAGTAAAACACTAGACAATGCTTGT 59.234 34.615 0.00 1.82 41.92 3.16
309 310 7.072030 GTGAGTAAAACACTAGACAATGCTTG 58.928 38.462 0.00 0.00 37.72 4.01
310 311 6.073765 CGTGAGTAAAACACTAGACAATGCTT 60.074 38.462 0.00 0.00 37.72 3.91
311 312 5.405571 CGTGAGTAAAACACTAGACAATGCT 59.594 40.000 0.00 0.00 37.72 3.79
312 313 5.176958 ACGTGAGTAAAACACTAGACAATGC 59.823 40.000 0.00 0.00 46.88 3.56
313 314 6.764877 ACGTGAGTAAAACACTAGACAATG 57.235 37.500 0.00 0.00 46.88 2.82
331 332 3.418094 CGTTGCAAAACTTTACACGTGA 58.582 40.909 25.01 2.68 0.00 4.35
332 333 2.528287 CCGTTGCAAAACTTTACACGTG 59.472 45.455 15.48 15.48 0.00 4.49
333 334 2.419324 TCCGTTGCAAAACTTTACACGT 59.581 40.909 0.00 0.00 0.00 4.49
335 336 5.038033 TCATTCCGTTGCAAAACTTTACAC 58.962 37.500 0.00 0.00 0.00 2.90
336 337 5.038033 GTCATTCCGTTGCAAAACTTTACA 58.962 37.500 0.00 0.00 0.00 2.41
337 338 5.278604 AGTCATTCCGTTGCAAAACTTTAC 58.721 37.500 0.00 0.00 0.00 2.01
339 340 4.385358 AGTCATTCCGTTGCAAAACTTT 57.615 36.364 0.00 0.00 0.00 2.66
342 343 4.692371 GAAAGTCATTCCGTTGCAAAAC 57.308 40.909 0.00 0.00 31.44 2.43
353 354 4.517285 TCAGCATACCAGGAAAGTCATTC 58.483 43.478 0.00 0.00 37.31 2.67
354 355 4.574674 TCAGCATACCAGGAAAGTCATT 57.425 40.909 0.00 0.00 0.00 2.57
355 356 4.574674 TTCAGCATACCAGGAAAGTCAT 57.425 40.909 0.00 0.00 0.00 3.06
356 357 4.019411 TCATTCAGCATACCAGGAAAGTCA 60.019 41.667 0.00 0.00 0.00 3.41
357 358 4.517285 TCATTCAGCATACCAGGAAAGTC 58.483 43.478 0.00 0.00 0.00 3.01
358 359 4.574674 TCATTCAGCATACCAGGAAAGT 57.425 40.909 0.00 0.00 0.00 2.66
359 360 7.572523 TTATTCATTCAGCATACCAGGAAAG 57.427 36.000 0.00 0.00 0.00 2.62
361 362 7.953005 TTTTATTCATTCAGCATACCAGGAA 57.047 32.000 0.00 0.00 0.00 3.36
362 363 7.395772 TGTTTTTATTCATTCAGCATACCAGGA 59.604 33.333 0.00 0.00 0.00 3.86
364 365 8.984891 TTGTTTTTATTCATTCAGCATACCAG 57.015 30.769 0.00 0.00 0.00 4.00
365 366 9.770097 TTTTGTTTTTATTCATTCAGCATACCA 57.230 25.926 0.00 0.00 0.00 3.25
368 369 8.920665 CGGTTTTGTTTTTATTCATTCAGCATA 58.079 29.630 0.00 0.00 0.00 3.14
369 370 7.655328 TCGGTTTTGTTTTTATTCATTCAGCAT 59.345 29.630 0.00 0.00 0.00 3.79
370 371 6.980978 TCGGTTTTGTTTTTATTCATTCAGCA 59.019 30.769 0.00 0.00 0.00 4.41
371 372 7.401484 TCGGTTTTGTTTTTATTCATTCAGC 57.599 32.000 0.00 0.00 0.00 4.26
372 373 7.951565 GCATCGGTTTTGTTTTTATTCATTCAG 59.048 33.333 0.00 0.00 0.00 3.02
374 375 8.017587 AGCATCGGTTTTGTTTTTATTCATTC 57.982 30.769 0.00 0.00 0.00 2.67
383 384 8.686334 AGATTGATATAGCATCGGTTTTGTTTT 58.314 29.630 0.00 0.00 0.00 2.43
384 385 8.225603 AGATTGATATAGCATCGGTTTTGTTT 57.774 30.769 0.00 0.00 0.00 2.83
386 387 7.807977 AAGATTGATATAGCATCGGTTTTGT 57.192 32.000 0.00 0.00 0.00 2.83
387 388 8.230486 GGTAAGATTGATATAGCATCGGTTTTG 58.770 37.037 0.00 0.00 0.00 2.44
388 389 7.936847 TGGTAAGATTGATATAGCATCGGTTTT 59.063 33.333 0.00 0.00 0.00 2.43
389 390 7.450074 TGGTAAGATTGATATAGCATCGGTTT 58.550 34.615 0.00 0.00 0.00 3.27
390 391 7.004555 TGGTAAGATTGATATAGCATCGGTT 57.995 36.000 0.00 0.00 0.00 4.44
392 393 7.043125 CGAATGGTAAGATTGATATAGCATCGG 60.043 40.741 0.00 0.00 36.91 4.18
393 394 7.489435 ACGAATGGTAAGATTGATATAGCATCG 59.511 37.037 0.00 0.00 36.91 3.84
395 396 9.587772 GTACGAATGGTAAGATTGATATAGCAT 57.412 33.333 0.00 0.00 38.88 3.79
397 398 9.640963 AAGTACGAATGGTAAGATTGATATAGC 57.359 33.333 0.00 0.00 31.61 2.97
399 400 9.419297 GCAAGTACGAATGGTAAGATTGATATA 57.581 33.333 0.00 0.00 31.61 0.86
400 401 7.931407 TGCAAGTACGAATGGTAAGATTGATAT 59.069 33.333 0.00 0.00 31.61 1.63
401 402 7.269316 TGCAAGTACGAATGGTAAGATTGATA 58.731 34.615 0.00 0.00 31.61 2.15
403 404 5.483811 TGCAAGTACGAATGGTAAGATTGA 58.516 37.500 0.00 0.00 31.61 2.57
404 405 5.794687 TGCAAGTACGAATGGTAAGATTG 57.205 39.130 0.00 0.00 31.61 2.67
405 406 7.391148 AATTGCAAGTACGAATGGTAAGATT 57.609 32.000 4.94 0.00 31.61 2.40
406 407 7.391148 AAATTGCAAGTACGAATGGTAAGAT 57.609 32.000 4.94 0.00 31.61 2.40
407 408 6.811253 AAATTGCAAGTACGAATGGTAAGA 57.189 33.333 4.94 0.00 31.61 2.10
408 409 7.381139 ACAAAAATTGCAAGTACGAATGGTAAG 59.619 33.333 4.94 0.00 31.61 2.34
409 410 7.203910 ACAAAAATTGCAAGTACGAATGGTAA 58.796 30.769 4.94 0.00 31.61 2.85
411 412 5.596845 ACAAAAATTGCAAGTACGAATGGT 58.403 33.333 4.94 0.00 0.00 3.55
412 413 5.920273 AGACAAAAATTGCAAGTACGAATGG 59.080 36.000 4.94 0.00 0.00 3.16
413 414 6.991485 AGACAAAAATTGCAAGTACGAATG 57.009 33.333 4.94 0.89 0.00 2.67
414 415 7.491048 ACAAAGACAAAAATTGCAAGTACGAAT 59.509 29.630 4.94 0.00 0.00 3.34
415 416 6.809196 ACAAAGACAAAAATTGCAAGTACGAA 59.191 30.769 4.94 0.00 0.00 3.85
416 417 6.326375 ACAAAGACAAAAATTGCAAGTACGA 58.674 32.000 4.94 0.00 0.00 3.43
417 418 6.567769 ACAAAGACAAAAATTGCAAGTACG 57.432 33.333 4.94 0.00 0.00 3.67
418 419 6.682441 GCAACAAAGACAAAAATTGCAAGTAC 59.318 34.615 4.94 0.00 41.56 2.73
419 420 6.183360 GGCAACAAAGACAAAAATTGCAAGTA 60.183 34.615 4.94 0.00 43.26 2.24
422 423 4.979388 GGCAACAAAGACAAAAATTGCAA 58.021 34.783 0.00 0.00 43.26 4.08
423 424 4.612932 GGCAACAAAGACAAAAATTGCA 57.387 36.364 8.80 0.00 43.26 4.08
439 440 3.056607 ACTTATGTGGAATTGCTGGCAAC 60.057 43.478 10.28 0.00 38.88 4.17
441 442 2.754552 GACTTATGTGGAATTGCTGGCA 59.245 45.455 0.00 0.00 0.00 4.92
442 443 2.754552 TGACTTATGTGGAATTGCTGGC 59.245 45.455 0.00 0.00 0.00 4.85
443 444 5.587388 AATGACTTATGTGGAATTGCTGG 57.413 39.130 0.00 0.00 0.00 4.85
446 447 6.311200 GGACAAAATGACTTATGTGGAATTGC 59.689 38.462 0.00 0.00 0.00 3.56
447 448 6.813152 GGGACAAAATGACTTATGTGGAATTG 59.187 38.462 0.00 0.00 0.00 2.32
448 449 6.350110 CGGGACAAAATGACTTATGTGGAATT 60.350 38.462 0.00 0.00 0.00 2.17
449 450 5.125417 CGGGACAAAATGACTTATGTGGAAT 59.875 40.000 0.00 0.00 0.00 3.01
451 452 4.006989 CGGGACAAAATGACTTATGTGGA 58.993 43.478 0.00 0.00 0.00 4.02
453 454 5.621197 TTCGGGACAAAATGACTTATGTG 57.379 39.130 0.00 0.00 0.00 3.21
454 455 5.768164 AGTTTCGGGACAAAATGACTTATGT 59.232 36.000 0.00 0.00 0.00 2.29
455 456 6.254281 AGTTTCGGGACAAAATGACTTATG 57.746 37.500 0.00 0.00 0.00 1.90
457 458 6.702716 AAAGTTTCGGGACAAAATGACTTA 57.297 33.333 0.00 0.00 0.00 2.24
458 459 5.592104 AAAGTTTCGGGACAAAATGACTT 57.408 34.783 0.00 0.00 0.00 3.01
459 460 5.591067 TGTAAAGTTTCGGGACAAAATGACT 59.409 36.000 0.00 0.00 0.00 3.41
460 461 5.823353 TGTAAAGTTTCGGGACAAAATGAC 58.177 37.500 0.00 0.00 0.00 3.06
462 463 6.143758 CACATGTAAAGTTTCGGGACAAAATG 59.856 38.462 0.00 0.00 0.00 2.32
463 464 6.039941 TCACATGTAAAGTTTCGGGACAAAAT 59.960 34.615 0.00 0.00 0.00 1.82
464 465 5.357314 TCACATGTAAAGTTTCGGGACAAAA 59.643 36.000 0.00 0.00 0.00 2.44
465 466 4.882427 TCACATGTAAAGTTTCGGGACAAA 59.118 37.500 0.00 0.00 0.00 2.83
466 467 4.452825 TCACATGTAAAGTTTCGGGACAA 58.547 39.130 0.00 0.00 0.00 3.18
467 468 4.074627 TCACATGTAAAGTTTCGGGACA 57.925 40.909 0.00 0.00 0.00 4.02
468 469 5.622770 ATTCACATGTAAAGTTTCGGGAC 57.377 39.130 0.00 0.00 0.00 4.46
469 470 7.931578 ATTATTCACATGTAAAGTTTCGGGA 57.068 32.000 0.00 0.00 0.00 5.14
470 471 8.240682 TGAATTATTCACATGTAAAGTTTCGGG 58.759 33.333 3.20 0.00 34.08 5.14
471 472 9.277565 CTGAATTATTCACATGTAAAGTTTCGG 57.722 33.333 3.20 0.00 35.46 4.30
472 473 9.825972 ACTGAATTATTCACATGTAAAGTTTCG 57.174 29.630 3.20 0.00 35.46 3.46
481 482 8.400947 GCATTGTCTACTGAATTATTCACATGT 58.599 33.333 3.20 3.82 35.46 3.21
482 483 8.618677 AGCATTGTCTACTGAATTATTCACATG 58.381 33.333 3.20 0.00 35.46 3.21
485 486 8.832487 CAAGCATTGTCTACTGAATTATTCAC 57.168 34.615 3.20 0.00 42.34 3.18
516 517 1.573829 CTGGACTAGGCGCGCAAAAA 61.574 55.000 34.42 13.50 0.00 1.94
519 520 2.725203 AAACTGGACTAGGCGCGCAA 62.725 55.000 34.42 19.42 0.00 4.85
521 522 2.434359 AAACTGGACTAGGCGCGC 60.434 61.111 25.94 25.94 0.00 6.86
522 523 1.810030 GGAAACTGGACTAGGCGCG 60.810 63.158 0.00 0.00 0.00 6.86
524 525 2.178912 TTTGGAAACTGGACTAGGCG 57.821 50.000 0.00 0.00 0.00 5.52
525 526 4.082190 GGATTTTTGGAAACTGGACTAGGC 60.082 45.833 0.00 0.00 0.00 3.93
528 529 3.504520 GCGGATTTTTGGAAACTGGACTA 59.495 43.478 0.00 0.00 0.00 2.59
529 530 2.296190 GCGGATTTTTGGAAACTGGACT 59.704 45.455 0.00 0.00 0.00 3.85
532 533 2.403259 GTGCGGATTTTTGGAAACTGG 58.597 47.619 0.00 0.00 0.00 4.00
533 534 2.403259 GGTGCGGATTTTTGGAAACTG 58.597 47.619 0.00 0.00 0.00 3.16
534 535 1.000717 CGGTGCGGATTTTTGGAAACT 60.001 47.619 0.00 0.00 0.00 2.66
535 536 1.414378 CGGTGCGGATTTTTGGAAAC 58.586 50.000 0.00 0.00 0.00 2.78
536 537 0.319125 GCGGTGCGGATTTTTGGAAA 60.319 50.000 0.00 0.00 0.00 3.13
537 538 1.287503 GCGGTGCGGATTTTTGGAA 59.712 52.632 0.00 0.00 0.00 3.53
541 542 0.817013 ATCATGCGGTGCGGATTTTT 59.183 45.000 0.00 0.00 35.39 1.94
542 543 0.381801 GATCATGCGGTGCGGATTTT 59.618 50.000 0.00 0.00 35.39 1.82
546 547 2.202919 CAGATCATGCGGTGCGGA 60.203 61.111 0.00 0.00 0.00 5.54
548 549 1.006086 TAAACAGATCATGCGGTGCG 58.994 50.000 0.00 0.00 0.00 5.34
549 550 1.064060 GGTAAACAGATCATGCGGTGC 59.936 52.381 0.00 0.00 0.00 5.01
551 552 1.280710 TGGGTAAACAGATCATGCGGT 59.719 47.619 0.00 0.00 0.00 5.68
552 553 2.036958 TGGGTAAACAGATCATGCGG 57.963 50.000 0.00 0.00 0.00 5.69
553 554 4.756642 ACATATGGGTAAACAGATCATGCG 59.243 41.667 7.80 0.00 0.00 4.73
555 556 8.906867 AGAAAACATATGGGTAAACAGATCATG 58.093 33.333 7.80 0.00 0.00 3.07
556 557 9.125026 GAGAAAACATATGGGTAAACAGATCAT 57.875 33.333 7.80 0.00 0.00 2.45
557 558 7.556275 GGAGAAAACATATGGGTAAACAGATCA 59.444 37.037 7.80 0.00 0.00 2.92
560 561 6.785076 TGGAGAAAACATATGGGTAAACAGA 58.215 36.000 7.80 0.00 0.00 3.41
561 562 7.461182 TTGGAGAAAACATATGGGTAAACAG 57.539 36.000 7.80 0.00 0.00 3.16
562 563 7.671819 TGATTGGAGAAAACATATGGGTAAACA 59.328 33.333 7.80 0.00 0.00 2.83
564 565 8.837099 ATGATTGGAGAAAACATATGGGTAAA 57.163 30.769 7.80 0.00 0.00 2.01
565 566 7.505585 GGATGATTGGAGAAAACATATGGGTAA 59.494 37.037 7.80 0.00 0.00 2.85
566 567 7.004086 GGATGATTGGAGAAAACATATGGGTA 58.996 38.462 7.80 0.00 0.00 3.69
567 568 5.835280 GGATGATTGGAGAAAACATATGGGT 59.165 40.000 7.80 0.00 0.00 4.51
572 573 6.078456 ACCTGGATGATTGGAGAAAACATA 57.922 37.500 0.00 0.00 0.00 2.29
573 574 4.939255 ACCTGGATGATTGGAGAAAACAT 58.061 39.130 0.00 0.00 0.00 2.71
576 577 3.263170 TCGACCTGGATGATTGGAGAAAA 59.737 43.478 0.00 0.00 0.00 2.29
577 578 2.837591 TCGACCTGGATGATTGGAGAAA 59.162 45.455 0.00 0.00 0.00 2.52
578 579 2.466846 TCGACCTGGATGATTGGAGAA 58.533 47.619 0.00 0.00 0.00 2.87
579 580 2.159179 TCGACCTGGATGATTGGAGA 57.841 50.000 0.00 0.00 0.00 3.71
581 582 2.366590 CAGATCGACCTGGATGATTGGA 59.633 50.000 0.00 0.00 0.00 3.53
583 584 2.141517 GCAGATCGACCTGGATGATTG 58.858 52.381 9.34 5.90 34.82 2.67
584 585 2.045524 AGCAGATCGACCTGGATGATT 58.954 47.619 9.34 0.00 34.82 2.57
585 586 1.343789 CAGCAGATCGACCTGGATGAT 59.656 52.381 9.34 2.63 34.82 2.45
586 587 0.749049 CAGCAGATCGACCTGGATGA 59.251 55.000 9.34 0.00 34.82 2.92
587 588 3.285838 CAGCAGATCGACCTGGATG 57.714 57.895 9.34 0.00 34.82 3.51
590 591 2.503061 CCCAGCAGATCGACCTGG 59.497 66.667 9.34 17.35 44.49 4.45
591 592 2.202987 GCCCAGCAGATCGACCTG 60.203 66.667 1.03 1.03 37.23 4.00
592 593 3.474570 GGCCCAGCAGATCGACCT 61.475 66.667 0.00 0.00 0.00 3.85
613 614 0.247736 AGTTCATCTCGTCTGTGCCC 59.752 55.000 0.00 0.00 0.00 5.36
629 630 2.697751 AGATAATCGCTGGAGCTGAGTT 59.302 45.455 0.00 0.00 39.32 3.01
635 636 1.262683 GTGCAAGATAATCGCTGGAGC 59.737 52.381 0.00 0.00 37.78 4.70
728 733 2.190313 GGACGGATGCAGCCATGA 59.810 61.111 22.95 0.00 0.00 3.07
914 943 2.404750 GGAGGGAGGCTAGAGGGGA 61.405 68.421 0.00 0.00 0.00 4.81
915 944 2.202899 GGAGGGAGGCTAGAGGGG 59.797 72.222 0.00 0.00 0.00 4.79
916 945 2.202899 GGGAGGGAGGCTAGAGGG 59.797 72.222 0.00 0.00 0.00 4.30
917 946 2.202899 GGGGAGGGAGGCTAGAGG 59.797 72.222 0.00 0.00 0.00 3.69
932 961 3.990141 ATGAGGTTGGGGGAGGGGG 62.990 68.421 0.00 0.00 0.00 5.40
933 962 2.287194 ATGAGGTTGGGGGAGGGG 60.287 66.667 0.00 0.00 0.00 4.79
934 963 2.386935 GGATGAGGTTGGGGGAGGG 61.387 68.421 0.00 0.00 0.00 4.30
935 964 2.386935 GGGATGAGGTTGGGGGAGG 61.387 68.421 0.00 0.00 0.00 4.30
936 965 2.386935 GGGGATGAGGTTGGGGGAG 61.387 68.421 0.00 0.00 0.00 4.30
937 966 2.286885 GGGGATGAGGTTGGGGGA 60.287 66.667 0.00 0.00 0.00 4.81
938 967 1.593166 AATGGGGATGAGGTTGGGGG 61.593 60.000 0.00 0.00 0.00 5.40
968 997 0.399091 ATCAGGTAGCTGGCTGGCTA 60.399 55.000 21.22 8.26 42.97 3.93
969 998 1.692042 ATCAGGTAGCTGGCTGGCT 60.692 57.895 21.22 10.02 45.29 4.75
970 999 1.227793 GATCAGGTAGCTGGCTGGC 60.228 63.158 21.22 0.00 0.00 4.85
971 1000 0.392336 GAGATCAGGTAGCTGGCTGG 59.608 60.000 21.22 0.00 0.00 4.85
1070 1099 1.959226 CCCAAGAACGACACCACCG 60.959 63.158 0.00 0.00 0.00 4.94
1095 1124 4.821589 GACTTCCTGGCCTCCGCG 62.822 72.222 3.32 0.00 35.02 6.46
1114 1143 2.562912 CACCGTGATGTTGCTGCC 59.437 61.111 0.00 0.00 0.00 4.85
1115 1144 2.187599 GACCACCGTGATGTTGCTGC 62.188 60.000 0.00 0.00 0.00 5.25
1116 1145 1.868997 GACCACCGTGATGTTGCTG 59.131 57.895 0.00 0.00 0.00 4.41
1214 1243 4.842091 CCGCAAAGAGCATGCCGC 62.842 66.667 15.66 7.10 46.13 6.53
1228 1257 2.563427 GAAAAGAGTGGCAGCCGC 59.437 61.111 18.07 18.07 37.44 6.53
1234 1263 1.285950 GGCGTTGGAAAAGAGTGGC 59.714 57.895 0.00 0.00 0.00 5.01
1238 1267 1.069906 CAAGACGGCGTTGGAAAAGAG 60.070 52.381 16.19 0.00 0.00 2.85
1260 1290 0.963962 AAACCAGAGTGCAATGCAGG 59.036 50.000 8.73 9.10 40.08 4.85
1277 1307 2.487762 CTGCGTCCCAGAGCAAATTAAA 59.512 45.455 0.00 0.00 44.64 1.52
1281 1321 0.957395 CACTGCGTCCCAGAGCAAAT 60.957 55.000 0.00 0.00 44.64 2.32
1359 1404 2.297880 ACAAATCTGCTGCAGAAATGCA 59.702 40.909 33.31 12.47 44.04 3.96
1415 1463 1.376683 TACGGCAATGTGGCACTCC 60.377 57.895 19.83 12.91 43.94 3.85
1422 1470 4.420168 CAATAAAAGGGTACGGCAATGTG 58.580 43.478 0.00 0.00 0.00 3.21
1454 1510 7.676947 AGCAACTTGTTGTTCCTACTTATCTA 58.323 34.615 13.97 0.00 36.63 1.98
1466 1535 0.248458 CGCCGAAGCAACTTGTTGTT 60.248 50.000 13.97 6.23 39.83 2.83
1550 1854 7.962918 GCGTCATGACTTAAAGTTTCATATTGT 59.037 33.333 22.95 0.00 0.00 2.71
1551 1855 7.962373 TGCGTCATGACTTAAAGTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
1553 1857 7.609760 TGCGTCATGACTTAAAGTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
1555 1859 5.940192 TGCGTCATGACTTAAAGTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
1558 1948 6.874134 AGTAGATGCGTCATGACTTAAAGTTT 59.126 34.615 22.95 4.61 0.00 2.66
1560 1950 5.967088 AGTAGATGCGTCATGACTTAAAGT 58.033 37.500 22.95 6.51 0.00 2.66
1563 1953 6.694877 ACTAGTAGATGCGTCATGACTTAA 57.305 37.500 22.95 9.11 0.00 1.85
1567 1957 5.120363 TCGATACTAGTAGATGCGTCATGAC 59.880 44.000 16.21 16.21 0.00 3.06
1568 1958 5.235516 TCGATACTAGTAGATGCGTCATGA 58.764 41.667 8.99 0.00 0.00 3.07
1571 1961 6.204108 TGAAATCGATACTAGTAGATGCGTCA 59.796 38.462 8.99 8.39 0.00 4.35
1576 1966 9.684448 ACAATGTGAAATCGATACTAGTAGATG 57.316 33.333 8.85 0.98 0.00 2.90
1578 1968 8.899771 TCACAATGTGAAATCGATACTAGTAGA 58.100 33.333 14.37 1.56 39.78 2.59
1620 2010 9.199982 CTCGTAAAGTTTGACCAAGTTTATAGA 57.800 33.333 0.00 5.60 40.73 1.98
1621 2011 8.440833 CCTCGTAAAGTTTGACCAAGTTTATAG 58.559 37.037 0.00 4.72 40.73 1.31
1622 2012 7.095102 GCCTCGTAAAGTTTGACCAAGTTTATA 60.095 37.037 0.00 0.00 40.73 0.98
1626 2016 3.314357 GCCTCGTAAAGTTTGACCAAGTT 59.686 43.478 0.00 0.00 0.00 2.66
1627 2017 2.876550 GCCTCGTAAAGTTTGACCAAGT 59.123 45.455 0.00 0.00 0.00 3.16
1628 2018 3.139077 AGCCTCGTAAAGTTTGACCAAG 58.861 45.455 0.00 0.00 0.00 3.61
1632 2022 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
1633 2023 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
1634 2024 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
1637 2027 3.321111 TCTGAAGTCAAGCCTCGTAAAGT 59.679 43.478 0.00 0.00 0.00 2.66
1638 2028 3.675698 GTCTGAAGTCAAGCCTCGTAAAG 59.324 47.826 0.00 0.00 0.00 1.85
1640 2030 2.626266 TGTCTGAAGTCAAGCCTCGTAA 59.374 45.455 0.00 0.00 0.00 3.18
1641 2031 2.235891 TGTCTGAAGTCAAGCCTCGTA 58.764 47.619 0.00 0.00 0.00 3.43
1642 2032 1.040646 TGTCTGAAGTCAAGCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
1644 2034 4.322567 AGATTTGTCTGAAGTCAAGCCTC 58.677 43.478 0.00 0.00 0.00 4.70
1646 2036 6.749923 ATTAGATTTGTCTGAAGTCAAGCC 57.250 37.500 0.00 0.00 0.00 4.35
1647 2037 7.854916 GCATATTAGATTTGTCTGAAGTCAAGC 59.145 37.037 0.00 0.00 0.00 4.01
1648 2038 8.060679 CGCATATTAGATTTGTCTGAAGTCAAG 58.939 37.037 0.00 0.00 0.00 3.02
1652 2042 7.766278 AGTTCGCATATTAGATTTGTCTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
1665 2139 6.292703 CCGGTCCTTTTTAGTTCGCATATTAG 60.293 42.308 0.00 0.00 0.00 1.73
1667 2141 4.334481 CCGGTCCTTTTTAGTTCGCATATT 59.666 41.667 0.00 0.00 0.00 1.28
1670 2144 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
1672 2146 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
1673 2147 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
1674 2148 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
1676 2150 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
1677 2151 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
1678 2152 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1679 2153 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
1681 2155 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
1682 2156 0.614134 GTGTACTCCCTCCGGTCCTT 60.614 60.000 0.00 0.00 0.00 3.36
1684 2158 0.257039 TAGTGTACTCCCTCCGGTCC 59.743 60.000 0.00 0.00 0.00 4.46
1686 2160 1.293062 TCTAGTGTACTCCCTCCGGT 58.707 55.000 0.00 0.00 0.00 5.28
1687 2161 2.431954 TTCTAGTGTACTCCCTCCGG 57.568 55.000 0.00 0.00 0.00 5.14
1689 2163 6.739008 GCATAACATTCTAGTGTACTCCCTCC 60.739 46.154 0.00 0.00 0.00 4.30
1690 2164 6.217294 GCATAACATTCTAGTGTACTCCCTC 58.783 44.000 0.00 0.00 0.00 4.30
1691 2165 5.070580 GGCATAACATTCTAGTGTACTCCCT 59.929 44.000 0.00 0.00 0.00 4.20
1692 2166 5.070580 AGGCATAACATTCTAGTGTACTCCC 59.929 44.000 0.00 0.00 0.00 4.30
1694 2168 6.806751 TCAGGCATAACATTCTAGTGTACTC 58.193 40.000 0.00 0.00 0.00 2.59
1721 2247 2.333688 GAGTATGCCTCTTGGGTTCC 57.666 55.000 0.00 0.00 37.22 3.62
1740 2302 7.040478 TGGATTGTTATTCTGTCCAGTCAAAAG 60.040 37.037 0.00 0.00 34.23 2.27
1778 2340 0.464193 ATACACGCATGCAGGCATCA 60.464 50.000 24.53 5.25 33.90 3.07
1780 2342 0.464193 TCATACACGCATGCAGGCAT 60.464 50.000 24.53 4.65 37.08 4.40
1781 2343 0.464193 ATCATACACGCATGCAGGCA 60.464 50.000 24.53 3.48 0.00 4.75
1782 2344 0.236711 GATCATACACGCATGCAGGC 59.763 55.000 19.57 14.55 0.00 4.85
1783 2345 1.529865 CTGATCATACACGCATGCAGG 59.470 52.381 19.57 11.33 0.00 4.85
1784 2346 1.070108 GCTGATCATACACGCATGCAG 60.070 52.381 19.57 12.10 0.00 4.41
1786 2348 0.939419 TGCTGATCATACACGCATGC 59.061 50.000 7.91 7.91 0.00 4.06
1787 2349 1.935199 TGTGCTGATCATACACGCATG 59.065 47.619 18.78 0.00 37.11 4.06
1788 2350 2.207590 CTGTGCTGATCATACACGCAT 58.792 47.619 18.78 0.00 37.11 4.73
1789 2351 1.643880 CTGTGCTGATCATACACGCA 58.356 50.000 18.78 12.08 37.11 5.24
1790 2352 0.933097 CCTGTGCTGATCATACACGC 59.067 55.000 18.78 9.91 37.11 5.34
1792 2354 2.028420 TGCCTGTGCTGATCATACAC 57.972 50.000 17.78 17.78 38.71 2.90
1793 2355 2.946990 CAATGCCTGTGCTGATCATACA 59.053 45.455 11.18 11.18 38.71 2.29
1794 2356 2.287427 GCAATGCCTGTGCTGATCATAC 60.287 50.000 0.00 0.00 39.00 2.39
1814 2376 0.875908 TATTCAGATCACAGGCGCGC 60.876 55.000 25.94 25.94 0.00 6.86
1815 2377 1.570813 TTATTCAGATCACAGGCGCG 58.429 50.000 0.00 0.00 0.00 6.86
1816 2378 2.874701 ACATTATTCAGATCACAGGCGC 59.125 45.455 0.00 0.00 0.00 6.53
1817 2379 4.260907 CCAACATTATTCAGATCACAGGCG 60.261 45.833 0.00 0.00 0.00 5.52
1847 2410 0.625683 AAGCAGGGGATCAGGGTGAT 60.626 55.000 0.00 0.00 40.34 3.06
1899 2467 5.222631 GGTTCATTGCAAACTACCTGAAAG 58.777 41.667 11.40 0.00 0.00 2.62
1902 2470 3.153919 GGGTTCATTGCAAACTACCTGA 58.846 45.455 20.04 9.79 0.00 3.86
1903 2471 2.890311 TGGGTTCATTGCAAACTACCTG 59.110 45.455 20.04 7.85 0.00 4.00
1904 2472 3.237268 TGGGTTCATTGCAAACTACCT 57.763 42.857 20.04 0.00 0.00 3.08
1985 2559 3.071479 GGTTCAGAGTTCATTGCGGTAA 58.929 45.455 0.00 0.00 0.00 2.85
1989 2563 2.416747 TCTGGTTCAGAGTTCATTGCG 58.583 47.619 0.00 0.00 35.39 4.85
2006 2580 2.281762 GCTAAGTCACGGCGTTAATCTG 59.718 50.000 11.19 0.00 0.00 2.90
2019 2593 5.047021 AGTCTGAACTATTGCTGCTAAGTCA 60.047 40.000 0.00 0.00 32.59 3.41
2025 2599 3.369261 CCAGAGTCTGAACTATTGCTGCT 60.369 47.826 22.09 0.00 35.28 4.24
2073 2687 2.951642 CACATTCACACCACAGAACCTT 59.048 45.455 0.00 0.00 0.00 3.50
2098 2712 1.290324 CCGAGCCCCTGTATCATCG 59.710 63.158 0.00 0.00 0.00 3.84
2377 2992 2.032681 AGGTTGAGGAAGCACGCC 59.967 61.111 0.00 0.00 31.56 5.68
2380 2995 0.868406 CGTTGAGGTTGAGGAAGCAC 59.132 55.000 0.00 0.00 31.56 4.40
2457 3072 1.080569 CCATTGTCTTGGCCGTTGC 60.081 57.895 0.00 0.00 0.00 4.17
2464 3079 2.879907 CTGCCGCCATTGTCTTGG 59.120 61.111 0.00 0.00 39.94 3.61
2465 3080 2.180017 GCTGCCGCCATTGTCTTG 59.820 61.111 0.00 0.00 0.00 3.02
2479 3094 4.117372 GACGAACCGAACGCGCTG 62.117 66.667 5.73 1.02 35.83 5.18
2491 3106 0.388649 GCCAGAAGAAGAGCGACGAA 60.389 55.000 0.00 0.00 0.00 3.85
2679 3297 2.277120 CCGACGACGACGATGACC 60.277 66.667 20.63 0.00 42.66 4.02
2706 3324 2.552768 GCGGGAAACGTTCGAACC 59.447 61.111 22.07 7.94 46.52 3.62
2782 3400 0.868406 CCCGTGTCTTGTCAAGCTTC 59.132 55.000 7.78 2.17 0.00 3.86
2923 3541 8.408601 GGAGTACGAATTAGTACCAAATGAGTA 58.591 37.037 20.98 0.00 45.91 2.59
2925 3543 7.490000 AGGAGTACGAATTAGTACCAAATGAG 58.510 38.462 20.98 0.00 45.91 2.90
2930 3548 7.112122 TGACTAGGAGTACGAATTAGTACCAA 58.888 38.462 20.98 7.30 45.91 3.67
2946 3564 7.628234 AGGCCAATAATTATCATGACTAGGAG 58.372 38.462 5.01 0.00 0.00 3.69
2947 3565 7.574021 AGGCCAATAATTATCATGACTAGGA 57.426 36.000 5.01 0.00 0.00 2.94
2948 3566 7.667219 ACAAGGCCAATAATTATCATGACTAGG 59.333 37.037 5.01 0.00 0.00 3.02
2949 3567 8.627208 ACAAGGCCAATAATTATCATGACTAG 57.373 34.615 5.01 0.00 0.00 2.57
2950 3568 8.439971 AGACAAGGCCAATAATTATCATGACTA 58.560 33.333 5.01 0.00 0.00 2.59
2951 3569 7.293073 AGACAAGGCCAATAATTATCATGACT 58.707 34.615 5.01 0.00 0.00 3.41
2960 3578 7.978099 AAGGAAATAGACAAGGCCAATAATT 57.022 32.000 5.01 0.00 0.00 1.40
2967 3585 4.767409 ACTGAAAAGGAAATAGACAAGGCC 59.233 41.667 0.00 0.00 0.00 5.19
2976 3594 6.432403 AATTGGGCAACTGAAAAGGAAATA 57.568 33.333 0.00 0.00 0.00 1.40
3032 3650 3.627395 TTCCAGCAATCGGTTACAGAT 57.373 42.857 0.00 0.00 0.00 2.90
3061 3679 1.329906 GACAAGGCAGCGATTCTGATG 59.670 52.381 0.00 0.00 45.72 3.07
3220 3838 0.984230 TTCACCATCCTGTCTGTCCC 59.016 55.000 0.00 0.00 0.00 4.46
3227 3845 2.269023 TCCACAGATTCACCATCCTGT 58.731 47.619 0.00 0.00 31.20 4.00
3228 3846 3.572632 ATCCACAGATTCACCATCCTG 57.427 47.619 0.00 0.00 31.20 3.86
3229 3847 4.302067 AGTATCCACAGATTCACCATCCT 58.698 43.478 0.00 0.00 33.67 3.24
3230 3848 4.636249 GAGTATCCACAGATTCACCATCC 58.364 47.826 0.00 0.00 33.67 3.51
3269 4012 1.407979 ACCCCATGTCGTATCTTCGTC 59.592 52.381 0.00 0.00 0.00 4.20
3309 4052 4.241681 GAGATATTCAGGGAGCGAATGTC 58.758 47.826 0.00 0.00 39.78 3.06
3310 4053 3.007398 GGAGATATTCAGGGAGCGAATGT 59.993 47.826 0.00 0.00 34.89 2.71
3311 4054 3.260380 AGGAGATATTCAGGGAGCGAATG 59.740 47.826 0.00 0.00 34.89 2.67
3334 4077 1.347707 TCTGAATCGTCTTGGCCAACT 59.652 47.619 16.05 0.00 0.00 3.16
3347 4090 4.387598 CTCCCCATGTCAGATTCTGAATC 58.612 47.826 20.14 20.14 42.46 2.52
3370 4113 0.659957 GCAAGGTCGATGAAGATGGC 59.340 55.000 0.00 0.00 0.00 4.40
3382 4125 0.034089 ACTATTGGGGCAGCAAGGTC 60.034 55.000 0.00 0.00 0.00 3.85
3385 4128 3.004752 AGTTACTATTGGGGCAGCAAG 57.995 47.619 0.00 0.00 0.00 4.01
3389 4132 3.181454 CCACCTAGTTACTATTGGGGCAG 60.181 52.174 10.68 0.00 0.00 4.85
3394 4137 5.990668 AGAAAGCCACCTAGTTACTATTGG 58.009 41.667 13.10 13.10 0.00 3.16
3403 4189 4.164204 AGAGAGAAAGAAAGCCACCTAGT 58.836 43.478 0.00 0.00 0.00 2.57
3441 4232 7.004691 TCGGATGATCTTAGAGAAGACCATTA 58.995 38.462 0.00 0.00 44.73 1.90
3446 4237 6.385649 ACTTCGGATGATCTTAGAGAAGAC 57.614 41.667 18.47 0.00 44.50 3.01
3462 4253 3.063452 GCATCGCAAAAGATTACTTCGGA 59.937 43.478 0.00 0.00 35.05 4.55
3484 4276 4.627611 ATTCATTGGATCTCAACAAGCG 57.372 40.909 0.00 0.00 38.31 4.68
3486 4278 4.796830 CGCAATTCATTGGATCTCAACAAG 59.203 41.667 1.77 0.00 38.31 3.16
3493 4285 6.543465 TCATAAAGTCGCAATTCATTGGATCT 59.457 34.615 1.77 0.00 38.21 2.75
3499 4291 5.527214 TCGGATCATAAAGTCGCAATTCATT 59.473 36.000 0.00 0.00 0.00 2.57
3508 4300 7.545615 TCAATGGATAATCGGATCATAAAGTCG 59.454 37.037 0.00 0.00 0.00 4.18
3510 4302 9.745018 ATTCAATGGATAATCGGATCATAAAGT 57.255 29.630 0.00 0.00 0.00 2.66
3592 4384 4.098654 CCAAAGTAGACGGACAGATCAGAT 59.901 45.833 0.00 0.00 0.00 2.90
3595 4387 2.094182 GCCAAAGTAGACGGACAGATCA 60.094 50.000 0.00 0.00 0.00 2.92
3601 4393 1.439679 CTTGGCCAAAGTAGACGGAC 58.560 55.000 20.91 0.00 0.00 4.79
3641 4433 3.118038 TGAACCTACCACAAAGCACTTCT 60.118 43.478 0.00 0.00 0.00 2.85
3670 4465 0.977627 ATCAGTGGACAGGATCGCCA 60.978 55.000 0.00 0.00 36.29 5.69
3673 4468 4.500545 CCTTTCTATCAGTGGACAGGATCG 60.501 50.000 0.00 0.00 35.44 3.69
3689 4484 7.716799 ACAATATGTGCCATTTTCCTTTCTA 57.283 32.000 0.00 0.00 0.00 2.10
3698 4493 6.642430 AGCAACAATACAATATGTGCCATTT 58.358 32.000 0.00 0.00 0.00 2.32
3701 4496 5.885352 AGTAGCAACAATACAATATGTGCCA 59.115 36.000 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.