Multiple sequence alignment - TraesCS5A01G288000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G288000 chr5A 100.000 2456 0 0 1 2456 495819769 495817314 0.000000e+00 4536.0
1 TraesCS5A01G288000 chr5A 95.647 1585 68 1 1 1584 663336729 663338313 0.000000e+00 2543.0
2 TraesCS5A01G288000 chr5A 95.142 1585 72 2 4 1587 495728732 495727152 0.000000e+00 2495.0
3 TraesCS5A01G288000 chr5A 96.275 886 33 0 408 1293 495587857 495586972 0.000000e+00 1454.0
4 TraesCS5A01G288000 chr5A 88.024 501 46 8 1886 2373 495724614 495724115 4.550000e-162 580.0
5 TraesCS5A01G288000 chr5A 97.073 205 5 1 1384 1587 495586964 495586760 6.500000e-91 344.0
6 TraesCS5A01G288000 chr5A 81.579 228 16 14 1380 1581 495585157 495584930 5.430000e-37 165.0
7 TraesCS5A01G288000 chr5A 94.545 55 3 0 2388 2442 495724120 495724066 4.350000e-13 86.1
8 TraesCS5A01G288000 chr5D 96.010 1579 62 1 4 1581 393739064 393737486 0.000000e+00 2566.0
9 TraesCS5A01G288000 chr5D 88.752 1618 141 20 4 1581 393619382 393617766 0.000000e+00 1941.0
10 TraesCS5A01G288000 chr5D 86.042 1440 197 4 12 1449 549324070 549325507 0.000000e+00 1543.0
11 TraesCS5A01G288000 chr5B 93.814 1568 90 2 15 1581 473610262 473608701 0.000000e+00 2351.0
12 TraesCS5A01G288000 chr5B 88.745 1617 143 17 4 1581 473520088 473518472 0.000000e+00 1941.0
13 TraesCS5A01G288000 chr5B 85.364 1428 189 12 29 1448 701003367 701001952 0.000000e+00 1461.0
14 TraesCS5A01G288000 chr5B 80.498 241 46 1 2137 2377 118604847 118605086 1.500000e-42 183.0
15 TraesCS5A01G288000 chr6A 80.252 238 44 3 2141 2377 355989224 355988989 2.510000e-40 176.0
16 TraesCS5A01G288000 chr6A 94.444 54 2 1 2390 2443 215873716 215873664 5.630000e-12 82.4
17 TraesCS5A01G288000 chr3B 83.511 188 31 0 2167 2354 766381623 766381810 2.510000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G288000 chr5A 495817314 495819769 2455 True 4536.000000 4536 100.000000 1 2456 1 chr5A.!!$R1 2455
1 TraesCS5A01G288000 chr5A 663336729 663338313 1584 False 2543.000000 2543 95.647000 1 1584 1 chr5A.!!$F1 1583
2 TraesCS5A01G288000 chr5A 495724066 495728732 4666 True 1053.700000 2495 92.570333 4 2442 3 chr5A.!!$R3 2438
3 TraesCS5A01G288000 chr5A 495584930 495587857 2927 True 654.333333 1454 91.642333 408 1587 3 chr5A.!!$R2 1179
4 TraesCS5A01G288000 chr5D 393737486 393739064 1578 True 2566.000000 2566 96.010000 4 1581 1 chr5D.!!$R2 1577
5 TraesCS5A01G288000 chr5D 393617766 393619382 1616 True 1941.000000 1941 88.752000 4 1581 1 chr5D.!!$R1 1577
6 TraesCS5A01G288000 chr5D 549324070 549325507 1437 False 1543.000000 1543 86.042000 12 1449 1 chr5D.!!$F1 1437
7 TraesCS5A01G288000 chr5B 473608701 473610262 1561 True 2351.000000 2351 93.814000 15 1581 1 chr5B.!!$R2 1566
8 TraesCS5A01G288000 chr5B 473518472 473520088 1616 True 1941.000000 1941 88.745000 4 1581 1 chr5B.!!$R1 1577
9 TraesCS5A01G288000 chr5B 701001952 701003367 1415 True 1461.000000 1461 85.364000 29 1448 1 chr5B.!!$R3 1419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 462 0.107643 TTGGACGAGCATGTGTTCCA 59.892 50.0 0.0 0.0 0.0 3.53 F
547 548 0.736325 CAAGTACGAGCGGTTCCAGG 60.736 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1319 0.179004 TTGGCCAACGTGAACTCCAT 60.179 50.0 16.05 0.0 0.00 3.41 R
2119 6301 0.250684 TTCATGGAGCTTTGCGGTCA 60.251 50.0 0.00 0.0 41.89 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.152777 CAACCTGCACCAACTGGGA 60.153 57.895 0.00 0.00 41.15 4.37
101 102 1.001120 TGGGACCTCTACCGCATCA 59.999 57.895 0.00 0.00 0.00 3.07
115 116 2.029288 CATCACAACCTGCGCGACT 61.029 57.895 12.10 0.00 0.00 4.18
150 151 2.417516 CCCGTCATGCTACTCCGG 59.582 66.667 0.00 0.00 38.39 5.14
234 235 1.516386 CGACGCCGACTATTGCAGT 60.516 57.895 0.00 0.00 41.47 4.40
300 301 0.315568 GCGTCTCCTTCTCGCCATAT 59.684 55.000 0.00 0.00 43.41 1.78
323 324 1.065764 CCTACTAGCGCGACATGCA 59.934 57.895 12.10 0.00 46.97 3.96
461 462 0.107643 TTGGACGAGCATGTGTTCCA 59.892 50.000 0.00 0.00 0.00 3.53
547 548 0.736325 CAAGTACGAGCGGTTCCAGG 60.736 60.000 0.00 0.00 0.00 4.45
595 596 3.452786 CCAGCTTCTCCGCCGAGA 61.453 66.667 0.18 0.18 43.62 4.04
681 682 3.486383 GAGGATCTTCAGAGACCTCGAT 58.514 50.000 13.55 0.00 38.86 3.59
797 798 4.872357 CGAGGAGCATGGCTTCAT 57.128 55.556 0.00 0.00 39.88 2.57
841 842 4.365505 TGGACGCGTTCATCGGCA 62.366 61.111 18.26 0.00 36.51 5.69
978 994 3.755628 GTGCAGCCGGACGACCTA 61.756 66.667 5.05 0.00 0.00 3.08
1303 1319 3.253061 TCATGGGGGTGGCGAACA 61.253 61.111 0.00 0.00 0.00 3.18
1591 5754 2.698855 ACATGAATCCTCCTTCACCG 57.301 50.000 0.00 0.00 37.93 4.94
1593 5756 0.181350 ATGAATCCTCCTTCACCGCC 59.819 55.000 0.00 0.00 37.93 6.13
1594 5757 1.521681 GAATCCTCCTTCACCGCCG 60.522 63.158 0.00 0.00 0.00 6.46
1623 5786 4.796231 CGTTCCCTCCCTGCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
1667 5830 2.191786 AAATGTGACGATGCGGGGGA 62.192 55.000 0.00 0.00 0.00 4.81
1668 5831 2.593468 AATGTGACGATGCGGGGGAG 62.593 60.000 0.00 0.00 0.00 4.30
1722 5885 1.973816 CTGCCAGCAGCTCTCATCCT 61.974 60.000 6.72 0.00 44.23 3.24
1727 5890 1.882167 GCAGCTCTCATCCTGCGAC 60.882 63.158 0.00 0.00 44.12 5.19
1758 5921 2.561885 CTCCTCGCGACGACTGTT 59.438 61.111 3.71 0.00 0.00 3.16
1788 5951 4.988716 ACCGGTCTCCTGGTCGCA 62.989 66.667 0.00 0.00 31.16 5.10
1868 6038 4.016706 CGCTCCCCTTCCACGGTT 62.017 66.667 0.00 0.00 0.00 4.44
1869 6039 2.046217 GCTCCCCTTCCACGGTTC 60.046 66.667 0.00 0.00 0.00 3.62
1870 6040 2.890766 GCTCCCCTTCCACGGTTCA 61.891 63.158 0.00 0.00 0.00 3.18
1871 6041 1.003718 CTCCCCTTCCACGGTTCAC 60.004 63.158 0.00 0.00 0.00 3.18
1872 6042 2.033602 CCCCTTCCACGGTTCACC 59.966 66.667 0.00 0.00 0.00 4.02
1882 6052 2.572284 GGTTCACCGTCGGGAGAG 59.428 66.667 17.28 2.55 41.26 3.20
1883 6053 2.126031 GTTCACCGTCGGGAGAGC 60.126 66.667 17.28 11.31 41.26 4.09
1884 6054 2.282958 TTCACCGTCGGGAGAGCT 60.283 61.111 17.28 0.00 41.26 4.09
1885 6055 2.636412 TTCACCGTCGGGAGAGCTG 61.636 63.158 17.28 3.43 41.26 4.24
1886 6056 4.803426 CACCGTCGGGAGAGCTGC 62.803 72.222 17.28 0.00 41.26 5.25
1893 6063 4.475135 GGGAGAGCTGCCGTTCCC 62.475 72.222 15.23 15.23 42.30 3.97
1894 6064 4.475135 GGAGAGCTGCCGTTCCCC 62.475 72.222 0.00 0.00 0.00 4.81
1895 6065 3.394836 GAGAGCTGCCGTTCCCCT 61.395 66.667 0.00 0.00 0.00 4.79
1896 6066 2.930562 AGAGCTGCCGTTCCCCTT 60.931 61.111 0.00 0.00 0.00 3.95
1901 6071 2.920912 TGCCGTTCCCCTTCTCGT 60.921 61.111 0.00 0.00 0.00 4.18
1910 6080 3.691342 CCTTCTCGTGGTGGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
1976 6155 3.479203 CTGCCGGTATCAGCCCCA 61.479 66.667 1.90 0.00 0.00 4.96
1983 6162 2.687200 TATCAGCCCCAGCGTGGT 60.687 61.111 3.82 0.00 46.67 4.16
2003 6182 1.539124 AACCGAGCTTCCCCTCCTT 60.539 57.895 0.00 0.00 0.00 3.36
2004 6183 1.554583 AACCGAGCTTCCCCTCCTTC 61.555 60.000 0.00 0.00 0.00 3.46
2006 6185 2.904131 GAGCTTCCCCTCCTTCGG 59.096 66.667 0.00 0.00 0.00 4.30
2055 6237 2.016096 GCATGTGGAAGAAGAGAGGGC 61.016 57.143 0.00 0.00 0.00 5.19
2056 6238 0.915364 ATGTGGAAGAAGAGAGGGCC 59.085 55.000 0.00 0.00 0.00 5.80
2097 6279 1.614824 CTCCCTGCTGGTCCTCCTT 60.615 63.158 9.00 0.00 34.77 3.36
2099 6281 2.045536 CCTGCTGGTCCTCCTTGC 60.046 66.667 0.51 0.00 35.63 4.01
2107 6289 3.849951 TCCTCCTTGCGATCCGGC 61.850 66.667 0.00 0.00 0.00 6.13
2128 6310 2.258013 CCTCCGCTTTGACCGCAAA 61.258 57.895 0.00 0.00 41.47 3.68
2134 6316 4.569279 TTTGACCGCAAAGCTCCA 57.431 50.000 0.00 0.00 38.99 3.86
2135 6317 3.034924 TTTGACCGCAAAGCTCCAT 57.965 47.368 0.00 0.00 38.99 3.41
2150 6332 2.465813 CTCCATGAAGACCACTCCTCT 58.534 52.381 0.00 0.00 0.00 3.69
2157 6339 0.780637 AGACCACTCCTCTGACCTCA 59.219 55.000 0.00 0.00 0.00 3.86
2164 6346 3.444034 CACTCCTCTGACCTCACGAAATA 59.556 47.826 0.00 0.00 0.00 1.40
2208 6390 0.807667 CTCTCAGGTGGCATGTACGC 60.808 60.000 0.00 0.00 0.00 4.42
2212 6394 2.125673 GGTGGCATGTACGCGTCT 60.126 61.111 18.63 0.00 0.00 4.18
2214 6396 1.419922 GTGGCATGTACGCGTCTTG 59.580 57.895 18.63 16.33 0.00 3.02
2234 6416 0.322648 AGTGCTGCTACATGTGCTCA 59.677 50.000 9.11 9.47 0.00 4.26
2248 6430 3.095347 GCTCAGACCCCGGTCATCC 62.095 68.421 16.08 0.00 46.76 3.51
2297 6479 4.563184 GTGTCGGAAGAGTTGATGATGTAC 59.437 45.833 0.00 0.00 43.49 2.90
2298 6480 4.113354 GTCGGAAGAGTTGATGATGTACC 58.887 47.826 0.00 0.00 43.49 3.34
2312 6494 1.006102 GTACCGGCATGGGATCGAG 60.006 63.158 0.00 0.00 44.64 4.04
2319 6501 2.142761 CATGGGATCGAGGGCCTCA 61.143 63.158 31.69 19.42 0.00 3.86
2354 6536 2.187946 GTGCCTGACATCCCTCCG 59.812 66.667 0.00 0.00 0.00 4.63
2427 6609 1.903877 CGTGATGGGGTGGCTTCTCT 61.904 60.000 0.00 0.00 0.00 3.10
2438 6620 1.685517 TGGCTTCTCTGGAGATGATCG 59.314 52.381 14.86 0.00 37.29 3.69
2442 6624 1.614996 TCTCTGGAGATGATCGAGGC 58.385 55.000 0.00 0.00 34.67 4.70
2443 6625 0.240678 CTCTGGAGATGATCGAGGCG 59.759 60.000 0.00 0.00 34.67 5.52
2444 6626 1.175347 TCTGGAGATGATCGAGGCGG 61.175 60.000 0.00 0.00 34.67 6.13
2445 6627 1.152756 TGGAGATGATCGAGGCGGA 60.153 57.895 0.00 0.00 0.00 5.54
2446 6628 1.175347 TGGAGATGATCGAGGCGGAG 61.175 60.000 0.00 0.00 0.00 4.63
2447 6629 1.175983 GGAGATGATCGAGGCGGAGT 61.176 60.000 0.00 0.00 0.00 3.85
2448 6630 0.039617 GAGATGATCGAGGCGGAGTG 60.040 60.000 0.00 0.00 0.00 3.51
2449 6631 0.466372 AGATGATCGAGGCGGAGTGA 60.466 55.000 0.00 0.00 0.00 3.41
2450 6632 0.600557 GATGATCGAGGCGGAGTGAT 59.399 55.000 0.00 0.00 0.00 3.06
2451 6633 1.813178 GATGATCGAGGCGGAGTGATA 59.187 52.381 0.00 0.00 0.00 2.15
2452 6634 1.687563 TGATCGAGGCGGAGTGATAA 58.312 50.000 0.00 0.00 0.00 1.75
2453 6635 1.337071 TGATCGAGGCGGAGTGATAAC 59.663 52.381 0.00 0.00 0.00 1.89
2454 6636 0.674534 ATCGAGGCGGAGTGATAACC 59.325 55.000 0.00 0.00 0.00 2.85
2455 6637 1.067582 CGAGGCGGAGTGATAACCC 59.932 63.158 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.529152 TTCCTCGGTGCTACGCTTCA 61.529 55.000 0.00 0.00 0.00 3.02
9 10 3.458163 CGCCCTTCCTCGGTGCTA 61.458 66.667 0.00 0.00 0.00 3.49
66 67 2.126596 CAGTTGGTGCAGGTTGCCA 61.127 57.895 0.00 0.00 44.23 4.92
87 88 0.249398 GGTTGTGATGCGGTAGAGGT 59.751 55.000 0.00 0.00 0.00 3.85
101 102 2.972505 CCAAGTCGCGCAGGTTGT 60.973 61.111 8.75 0.00 0.00 3.32
168 169 3.681835 GCGGACGAGACCACCACT 61.682 66.667 0.00 0.00 0.00 4.00
199 200 1.671054 CGTGGGCCTTCATGACGTT 60.671 57.895 4.53 0.00 0.00 3.99
486 487 3.075005 ACGCTCCCATACGCCACT 61.075 61.111 0.00 0.00 0.00 4.00
547 548 2.184579 GGCCTCCTGTAGCACGTC 59.815 66.667 0.00 0.00 0.00 4.34
595 596 0.822121 GCGGTGTTGGGGAAGAAGTT 60.822 55.000 0.00 0.00 0.00 2.66
681 682 0.320771 GCACTTCCTCGAAGAAGCCA 60.321 55.000 21.11 0.00 45.95 4.75
747 748 2.756400 GCATCCACCAGGTCACCA 59.244 61.111 0.00 0.00 35.89 4.17
797 798 2.879233 GCCTTGACGTGGTCCCTCA 61.879 63.158 0.00 0.00 0.00 3.86
841 842 3.050876 AGAGCTCGTGTCGACGCT 61.051 61.111 25.28 19.81 45.68 5.07
978 994 0.251653 TCAGGTAGGTCAGCTTCGGT 60.252 55.000 0.00 0.00 30.72 4.69
1125 1141 4.514594 TCCCTCCCGATGGCCCAT 62.515 66.667 0.00 0.00 0.00 4.00
1147 1163 3.415087 GTCCTGCCCCCAGCTCAT 61.415 66.667 0.00 0.00 44.23 2.90
1278 1294 2.532715 ACCCCCATGACCAGTGCT 60.533 61.111 0.00 0.00 0.00 4.40
1303 1319 0.179004 TTGGCCAACGTGAACTCCAT 60.179 50.000 16.05 0.00 0.00 3.41
1546 1602 2.020016 CAAGACGCGCGCATGTAC 59.980 61.111 32.58 16.01 0.00 2.90
1600 5763 4.735599 AGGGAGGGAACGGGGGAC 62.736 72.222 0.00 0.00 0.00 4.46
1601 5764 4.733725 CAGGGAGGGAACGGGGGA 62.734 72.222 0.00 0.00 0.00 4.81
1648 5811 1.748879 CCCCCGCATCGTCACATTT 60.749 57.895 0.00 0.00 0.00 2.32
1708 5871 2.056815 TCGCAGGATGAGAGCTGCT 61.057 57.895 0.00 0.00 40.97 4.24
1740 5903 2.979197 AACAGTCGTCGCGAGGAGG 61.979 63.158 29.84 25.19 36.23 4.30
1770 5933 4.436998 GCGACCAGGAGACCGGTG 62.437 72.222 14.63 0.00 32.44 4.94
1771 5934 4.988716 TGCGACCAGGAGACCGGT 62.989 66.667 6.92 6.92 34.29 5.28
1865 6035 2.572284 CTCTCCCGACGGTGAACC 59.428 66.667 13.94 0.00 31.34 3.62
1866 6036 2.126031 GCTCTCCCGACGGTGAAC 60.126 66.667 13.94 2.60 31.34 3.18
1867 6037 2.282958 AGCTCTCCCGACGGTGAA 60.283 61.111 13.94 0.00 31.34 3.18
1868 6038 3.062466 CAGCTCTCCCGACGGTGA 61.062 66.667 13.94 9.71 0.00 4.02
1869 6039 4.803426 GCAGCTCTCCCGACGGTG 62.803 72.222 13.94 4.26 0.00 4.94
1876 6046 4.475135 GGGAACGGCAGCTCTCCC 62.475 72.222 10.21 10.21 40.87 4.30
1877 6047 4.475135 GGGGAACGGCAGCTCTCC 62.475 72.222 0.00 0.00 0.00 3.71
1878 6048 2.860972 GAAGGGGAACGGCAGCTCTC 62.861 65.000 0.00 0.00 0.00 3.20
1879 6049 2.930562 AAGGGGAACGGCAGCTCT 60.931 61.111 0.00 0.00 0.00 4.09
1880 6050 2.436824 GAAGGGGAACGGCAGCTC 60.437 66.667 0.00 0.00 0.00 4.09
1881 6051 2.930562 AGAAGGGGAACGGCAGCT 60.931 61.111 0.00 0.00 0.00 4.24
1882 6052 2.436824 GAGAAGGGGAACGGCAGC 60.437 66.667 0.00 0.00 0.00 5.25
1883 6053 2.125512 CGAGAAGGGGAACGGCAG 60.126 66.667 0.00 0.00 0.00 4.85
1884 6054 2.920912 ACGAGAAGGGGAACGGCA 60.921 61.111 0.00 0.00 0.00 5.69
1885 6055 2.434359 CACGAGAAGGGGAACGGC 60.434 66.667 0.00 0.00 0.00 5.68
1892 6062 4.760047 CGGCCACCACGAGAAGGG 62.760 72.222 2.24 0.00 0.00 3.95
1893 6063 2.907897 GATCGGCCACCACGAGAAGG 62.908 65.000 2.24 0.00 44.24 3.46
1894 6064 1.519455 GATCGGCCACCACGAGAAG 60.519 63.158 2.24 0.00 44.24 2.85
1895 6065 2.577059 GATCGGCCACCACGAGAA 59.423 61.111 2.24 0.00 44.24 2.87
1896 6066 3.458163 GGATCGGCCACCACGAGA 61.458 66.667 2.24 0.00 44.24 4.04
1917 6088 4.779733 GCTGGGGTCGAGGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
1920 6091 2.266055 GTTGCTGGGGTCGAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
1949 6128 2.257409 ATACCGGCAGGAAGGTGCAG 62.257 60.000 10.86 0.00 45.93 4.41
1953 6132 1.972660 GCTGATACCGGCAGGAAGGT 61.973 60.000 10.86 0.82 44.05 3.50
1956 6135 2.742116 GGGCTGATACCGGCAGGAA 61.742 63.158 10.86 0.00 46.41 3.36
1960 6139 3.479203 CTGGGGCTGATACCGGCA 61.479 66.667 0.00 0.00 46.41 5.69
1964 6143 2.203070 CACGCTGGGGCTGATACC 60.203 66.667 0.00 0.00 36.09 2.73
1976 6155 3.165160 AAGCTCGGTTCACCACGCT 62.165 57.895 3.73 3.73 41.17 5.07
1983 6162 2.291043 GGAGGGGAAGCTCGGTTCA 61.291 63.158 10.56 0.00 0.00 3.18
2035 6214 2.016096 GCCCTCTCTTCTTCCACATGC 61.016 57.143 0.00 0.00 0.00 4.06
2081 6263 2.673523 CAAGGAGGACCAGCAGGG 59.326 66.667 0.00 0.00 44.81 4.45
2084 6266 2.244117 GATCGCAAGGAGGACCAGCA 62.244 60.000 0.00 0.00 38.68 4.41
2119 6301 0.250684 TTCATGGAGCTTTGCGGTCA 60.251 50.000 0.00 0.00 41.89 4.02
2128 6310 0.908198 GGAGTGGTCTTCATGGAGCT 59.092 55.000 0.00 0.00 35.11 4.09
2134 6316 2.183679 GGTCAGAGGAGTGGTCTTCAT 58.816 52.381 0.00 0.00 31.06 2.57
2135 6317 1.148027 AGGTCAGAGGAGTGGTCTTCA 59.852 52.381 0.00 0.00 31.06 3.02
2150 6332 4.988540 CAGTTGAAGTATTTCGTGAGGTCA 59.011 41.667 0.00 0.00 36.04 4.02
2157 6339 1.463444 GCCGCAGTTGAAGTATTTCGT 59.537 47.619 0.00 0.00 36.04 3.85
2164 6346 3.566261 CGATGCCGCAGTTGAAGT 58.434 55.556 0.00 0.00 0.00 3.01
2208 6390 1.657594 CATGTAGCAGCACTCAAGACG 59.342 52.381 0.00 0.00 0.00 4.18
2212 6394 1.159285 GCACATGTAGCAGCACTCAA 58.841 50.000 13.27 0.00 0.00 3.02
2214 6396 1.005340 GAGCACATGTAGCAGCACTC 58.995 55.000 18.31 6.80 0.00 3.51
2252 6434 4.857251 CCGTCTGGGCATAGGAAC 57.143 61.111 0.00 0.00 0.00 3.62
2273 6455 2.743636 TCATCAACTCTTCCGACACC 57.256 50.000 0.00 0.00 0.00 4.16
2297 6479 4.320456 CCCTCGATCCCATGCCGG 62.320 72.222 0.00 0.00 0.00 6.13
2298 6480 4.996434 GCCCTCGATCCCATGCCG 62.996 72.222 0.00 0.00 0.00 5.69
2312 6494 1.222113 GTGGAAGTAGCTGAGGCCC 59.778 63.158 0.00 0.00 39.73 5.80
2319 6501 1.478510 CACCTCGATGTGGAAGTAGCT 59.521 52.381 12.50 0.00 32.50 3.32
2386 6568 2.109126 GGTGACAATCGCCAGGAGC 61.109 63.158 3.51 0.00 46.03 4.70
2387 6569 4.208632 GGTGACAATCGCCAGGAG 57.791 61.111 3.51 0.00 46.03 3.69
2427 6609 1.152756 TCCGCCTCGATCATCTCCA 60.153 57.895 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.