Multiple sequence alignment - TraesCS5A01G287500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G287500 chr5A 100.000 3015 0 0 1 3015 495341049 495338035 0.000000e+00 5568.0
1 TraesCS5A01G287500 chr5A 89.615 1040 70 18 1130 2143 495359580 495358553 0.000000e+00 1288.0
2 TraesCS5A01G287500 chr5A 79.434 389 61 15 933 1306 495841200 495840816 1.070000e-64 257.0
3 TraesCS5A01G287500 chr5D 91.469 2321 110 33 1 2267 393571125 393568839 0.000000e+00 3109.0
4 TraesCS5A01G287500 chr5D 90.789 988 71 11 1170 2150 393608514 393607540 0.000000e+00 1303.0
5 TraesCS5A01G287500 chr5D 89.030 629 53 7 1127 1750 393712196 393711579 0.000000e+00 765.0
6 TraesCS5A01G287500 chr5D 82.067 658 79 22 933 1562 393753163 393752517 2.660000e-145 525.0
7 TraesCS5A01G287500 chr5D 97.980 99 2 0 2625 2723 393563642 393563544 4.000000e-39 172.0
8 TraesCS5A01G287500 chr5B 89.624 1677 109 29 610 2245 473292502 473290850 0.000000e+00 2073.0
9 TraesCS5A01G287500 chr5B 88.250 1217 97 22 954 2144 473468206 473467010 0.000000e+00 1413.0
10 TraesCS5A01G287500 chr5B 84.242 1504 122 43 724 2178 473449047 473447610 0.000000e+00 1358.0
11 TraesCS5A01G287500 chr5B 82.919 644 75 23 945 1562 473626083 473625449 5.680000e-152 547.0
12 TraesCS5A01G287500 chr5B 92.440 291 22 0 2725 3015 511717781 511717491 1.670000e-112 416.0
13 TraesCS5A01G287500 chr5B 79.004 562 65 26 771 1306 473455574 473455040 4.820000e-88 335.0
14 TraesCS5A01G287500 chr5B 94.944 178 9 0 2446 2623 473290644 473290467 2.290000e-71 279.0
15 TraesCS5A01G287500 chr5B 97.321 112 2 1 2613 2723 473287446 473287335 3.970000e-44 189.0
16 TraesCS5A01G287500 chr5B 89.510 143 15 0 210 352 473457612 473457470 6.640000e-42 182.0
17 TraesCS5A01G287500 chr5B 97.753 89 2 0 2244 2332 473290746 473290658 1.450000e-33 154.0
18 TraesCS5A01G287500 chr5B 86.923 130 14 3 52 178 473311393 473311264 3.130000e-30 143.0
19 TraesCS5A01G287500 chr5B 81.548 168 21 8 52 210 125789690 125789856 2.440000e-26 130.0
20 TraesCS5A01G287500 chr5B 95.000 60 3 0 193 252 473305775 473305716 8.900000e-16 95.3
21 TraesCS5A01G287500 chr6A 92.784 291 21 0 2725 3015 106499955 106500245 3.590000e-114 422.0
22 TraesCS5A01G287500 chr1D 90.034 291 29 0 2725 3015 4385123 4385413 7.890000e-101 377.0
23 TraesCS5A01G287500 chr6B 90.000 290 29 0 2725 3014 238116222 238116511 2.840000e-100 375.0
24 TraesCS5A01G287500 chr6B 82.659 173 19 9 52 213 622646953 622647125 3.130000e-30 143.0
25 TraesCS5A01G287500 chr3D 81.977 172 18 8 52 210 105832353 105832524 1.890000e-27 134.0
26 TraesCS5A01G287500 chr2B 82.166 157 20 6 52 200 685506034 685506190 8.770000e-26 128.0
27 TraesCS5A01G287500 chr2B 90.323 93 8 1 52 143 207724192 207724100 1.470000e-23 121.0
28 TraesCS5A01G287500 chr2B 90.323 93 8 1 52 143 207739824 207739732 1.470000e-23 121.0
29 TraesCS5A01G287500 chr2B 80.357 168 21 7 55 210 12602975 12602808 1.900000e-22 117.0
30 TraesCS5A01G287500 chr2A 84.762 105 15 1 394 497 70182072 70181968 1.480000e-18 104.0
31 TraesCS5A01G287500 chr7A 75.661 189 39 7 2779 2964 715241458 715241274 1.490000e-13 87.9
32 TraesCS5A01G287500 chr4B 97.297 37 0 1 329 364 66901630 66901594 9.030000e-06 62.1
33 TraesCS5A01G287500 chr4B 97.297 37 0 1 329 364 67037702 67037666 9.030000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G287500 chr5A 495338035 495341049 3014 True 5568.00 5568 100.0000 1 3015 1 chr5A.!!$R1 3014
1 TraesCS5A01G287500 chr5A 495358553 495359580 1027 True 1288.00 1288 89.6150 1130 2143 1 chr5A.!!$R2 1013
2 TraesCS5A01G287500 chr5D 393568839 393571125 2286 True 3109.00 3109 91.4690 1 2267 1 chr5D.!!$R2 2266
3 TraesCS5A01G287500 chr5D 393607540 393608514 974 True 1303.00 1303 90.7890 1170 2150 1 chr5D.!!$R3 980
4 TraesCS5A01G287500 chr5D 393711579 393712196 617 True 765.00 765 89.0300 1127 1750 1 chr5D.!!$R4 623
5 TraesCS5A01G287500 chr5D 393752517 393753163 646 True 525.00 525 82.0670 933 1562 1 chr5D.!!$R5 629
6 TraesCS5A01G287500 chr5B 473467010 473468206 1196 True 1413.00 1413 88.2500 954 2144 1 chr5B.!!$R4 1190
7 TraesCS5A01G287500 chr5B 473447610 473449047 1437 True 1358.00 1358 84.2420 724 2178 1 chr5B.!!$R3 1454
8 TraesCS5A01G287500 chr5B 473287335 473292502 5167 True 673.75 2073 94.9105 610 2723 4 chr5B.!!$R7 2113
9 TraesCS5A01G287500 chr5B 473625449 473626083 634 True 547.00 547 82.9190 945 1562 1 chr5B.!!$R5 617
10 TraesCS5A01G287500 chr5B 473455040 473457612 2572 True 258.50 335 84.2570 210 1306 2 chr5B.!!$R8 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 2073 0.322456 TTCTGGATTGGAGCGGGTTG 60.322 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 4175 0.03467 AAGGCAGGGAGCTTGATCAC 60.035 55.0 0.0 0.0 44.79 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.008767 GGGATAAGGTCGCGAGTCG 60.009 63.158 10.24 8.54 40.15 4.18
38 39 2.693762 CGCGAGTCGGGGAGTTGTA 61.694 63.158 20.92 0.00 36.19 2.41
126 127 6.801539 CACATCCTTGTGTACTTGTACAAT 57.198 37.500 9.13 2.49 46.68 2.71
133 134 6.485313 CCTTGTGTACTTGTACAATTCTTCCA 59.515 38.462 9.13 4.99 36.34 3.53
204 208 1.138247 GCTGAGCTCCAAAATGCCG 59.862 57.895 12.15 0.00 0.00 5.69
385 1605 9.720667 CATCATTATACAATTCGACACAAACAT 57.279 29.630 0.00 0.00 0.00 2.71
447 1667 1.754226 TGAAAACAGCAACTTCACCCC 59.246 47.619 0.00 0.00 0.00 4.95
491 1711 7.827819 TCAAGTGTACAATAAGCATCACTAC 57.172 36.000 0.00 0.00 35.53 2.73
536 1756 2.440409 GACAAGCCACCACAATGAGAT 58.560 47.619 0.00 0.00 0.00 2.75
555 1775 1.159285 TGAAGCCGTGCAAGATGAAG 58.841 50.000 0.00 0.00 0.00 3.02
566 1801 0.622665 AAGATGAAGGTGGGCTCAGG 59.377 55.000 0.00 0.00 0.00 3.86
578 1813 1.609072 GGGCTCAGGAAGACAACAAAC 59.391 52.381 0.00 0.00 32.94 2.93
582 1817 3.287222 CTCAGGAAGACAACAAACCCAA 58.713 45.455 0.00 0.00 0.00 4.12
584 1819 3.888930 TCAGGAAGACAACAAACCCAATC 59.111 43.478 0.00 0.00 0.00 2.67
587 1822 3.005791 GGAAGACAACAAACCCAATCCAG 59.994 47.826 0.00 0.00 0.00 3.86
635 2073 0.322456 TTCTGGATTGGAGCGGGTTG 60.322 55.000 0.00 0.00 0.00 3.77
638 2076 1.198094 TGGATTGGAGCGGGTTGAGA 61.198 55.000 0.00 0.00 0.00 3.27
710 2155 1.078637 AGACGGTGGATCGAGTCGA 60.079 57.895 19.06 19.06 41.13 4.20
848 2388 3.201708 ACCTATGGTGGACTAGACGTAGT 59.798 47.826 0.00 0.00 38.04 2.73
875 2423 2.871022 AGACGATCGATAGCGTTACAGT 59.129 45.455 24.34 0.00 41.34 3.55
926 2478 1.358402 CGCTGCGCTATCTCTCAGT 59.642 57.895 9.88 0.00 0.00 3.41
935 2487 3.558006 CGCTATCTCTCAGTTCTCGAGAA 59.442 47.826 23.74 23.74 38.99 2.87
990 2546 1.745489 GGGATCGGCACTGTTGTCC 60.745 63.158 0.00 0.00 0.00 4.02
1005 2561 0.676466 TGTCCATGGTGCGGATGTTC 60.676 55.000 12.58 0.00 34.32 3.18
1151 2722 1.393597 CGCACCGAAGAGTACGTTCG 61.394 60.000 20.31 20.31 45.12 3.95
1320 2951 4.831307 CGGGCTCGGAGTTCGTCG 62.831 72.222 0.00 0.81 40.32 5.12
1463 3100 0.038159 CGGACAAGACCTTCTTCGCT 60.038 55.000 0.00 0.00 33.78 4.93
1548 3185 3.941188 AGCGACCACCACACCTGG 61.941 66.667 0.00 0.00 44.26 4.45
1562 3199 1.153289 CCTGGACCGCCATGAGAAG 60.153 63.158 0.00 0.00 44.91 2.85
1714 3370 1.594331 AAAGTCACTTGAAGACCGCC 58.406 50.000 0.00 0.00 36.68 6.13
1786 3442 3.469008 TTTCTGTGCGGAAAGAAGAGA 57.531 42.857 9.66 0.00 34.09 3.10
1838 3494 2.507484 TCATGAACCTGCTTGAGTTGG 58.493 47.619 0.00 0.00 0.00 3.77
1882 3541 1.283321 GGAGAAGGCAAGGAGGATGTT 59.717 52.381 0.00 0.00 0.00 2.71
1906 3580 1.303615 TCCAGAGGAGGAGGACGAC 59.696 63.158 0.00 0.00 32.77 4.34
1909 3583 0.464735 CAGAGGAGGAGGACGACGAT 60.465 60.000 0.00 0.00 0.00 3.73
1910 3584 0.464735 AGAGGAGGAGGACGACGATG 60.465 60.000 0.00 0.00 0.00 3.84
1911 3585 0.464013 GAGGAGGAGGACGACGATGA 60.464 60.000 0.00 0.00 0.00 2.92
1912 3586 0.748729 AGGAGGAGGACGACGATGAC 60.749 60.000 0.00 0.00 0.00 3.06
1960 3634 3.527665 CCTCCCTCCCCTTTCATTTTCTA 59.472 47.826 0.00 0.00 0.00 2.10
1964 3638 4.527944 CCTCCCCTTTCATTTTCTAGGTC 58.472 47.826 0.00 0.00 0.00 3.85
2008 3685 2.224314 GGCCTTTGATGCTAAGCGTATC 59.776 50.000 0.00 0.00 35.55 2.24
2074 3753 6.981722 AGTTCATGTTAAACCCAATGAAGAC 58.018 36.000 0.00 0.00 0.00 3.01
2147 3830 3.734463 TGTATGAAACTGAACTTCCGCA 58.266 40.909 0.00 0.00 0.00 5.69
2152 3835 3.380004 TGAAACTGAACTTCCGCAACAAT 59.620 39.130 0.00 0.00 0.00 2.71
2163 3846 6.977213 ACTTCCGCAACAATTTTGTATACTT 58.023 32.000 4.17 0.00 41.31 2.24
2285 4073 7.921786 CAACAAGGATGATGGACTACTTAAA 57.078 36.000 0.00 0.00 0.00 1.52
2327 4115 3.551454 CCCAAGGCAATATCATTCTTGCG 60.551 47.826 1.65 0.00 46.79 4.85
2332 4120 2.223144 GCAATATCATTCTTGCGCGGTA 59.777 45.455 8.83 0.00 38.47 4.02
2333 4121 3.120199 GCAATATCATTCTTGCGCGGTAT 60.120 43.478 8.83 0.00 38.47 2.73
2335 4123 5.220662 GCAATATCATTCTTGCGCGGTATAT 60.221 40.000 8.83 0.00 38.47 0.86
2337 4125 7.465379 GCAATATCATTCTTGCGCGGTATATAA 60.465 37.037 8.83 0.00 38.47 0.98
2339 4127 6.985188 ATCATTCTTGCGCGGTATATAATT 57.015 33.333 8.83 0.00 0.00 1.40
2340 4128 6.795098 TCATTCTTGCGCGGTATATAATTT 57.205 33.333 8.83 0.00 0.00 1.82
2341 4129 7.197071 TCATTCTTGCGCGGTATATAATTTT 57.803 32.000 8.83 0.00 0.00 1.82
2342 4130 7.295201 TCATTCTTGCGCGGTATATAATTTTC 58.705 34.615 8.83 0.00 0.00 2.29
2345 4133 5.756347 TCTTGCGCGGTATATAATTTTCAGT 59.244 36.000 8.83 0.00 0.00 3.41
2346 4134 5.585500 TGCGCGGTATATAATTTTCAGTC 57.415 39.130 8.83 0.00 0.00 3.51
2347 4135 4.449743 TGCGCGGTATATAATTTTCAGTCC 59.550 41.667 8.83 0.00 0.00 3.85
2348 4136 4.689345 GCGCGGTATATAATTTTCAGTCCT 59.311 41.667 8.83 0.00 0.00 3.85
2349 4137 5.163982 GCGCGGTATATAATTTTCAGTCCTC 60.164 44.000 8.83 0.00 0.00 3.71
2350 4138 5.924254 CGCGGTATATAATTTTCAGTCCTCA 59.076 40.000 0.00 0.00 0.00 3.86
2351 4139 6.128902 CGCGGTATATAATTTTCAGTCCTCAC 60.129 42.308 0.00 0.00 0.00 3.51
2352 4140 6.704493 GCGGTATATAATTTTCAGTCCTCACA 59.296 38.462 0.00 0.00 0.00 3.58
2353 4141 7.387948 GCGGTATATAATTTTCAGTCCTCACAT 59.612 37.037 0.00 0.00 0.00 3.21
2354 4142 8.712363 CGGTATATAATTTTCAGTCCTCACATG 58.288 37.037 0.00 0.00 0.00 3.21
2355 4143 9.003658 GGTATATAATTTTCAGTCCTCACATGG 57.996 37.037 0.00 0.00 0.00 3.66
2356 4144 5.841957 ATAATTTTCAGTCCTCACATGGC 57.158 39.130 0.00 0.00 0.00 4.40
2357 4145 2.957402 TTTTCAGTCCTCACATGGCT 57.043 45.000 0.00 0.00 0.00 4.75
2358 4146 2.189594 TTTCAGTCCTCACATGGCTG 57.810 50.000 0.00 0.00 34.70 4.85
2359 4147 0.321919 TTCAGTCCTCACATGGCTGC 60.322 55.000 0.00 0.00 33.98 5.25
2360 4148 1.748122 CAGTCCTCACATGGCTGCC 60.748 63.158 12.87 12.87 0.00 4.85
2361 4149 2.439156 GTCCTCACATGGCTGCCC 60.439 66.667 17.53 0.00 0.00 5.36
2363 4151 2.036098 CCTCACATGGCTGCCCAA 59.964 61.111 17.53 0.00 46.14 4.12
2364 4152 2.345760 CCTCACATGGCTGCCCAAC 61.346 63.158 17.53 0.00 46.14 3.77
2365 4153 2.283101 TCACATGGCTGCCCAACC 60.283 61.111 17.53 0.00 46.14 3.77
2366 4154 2.283388 CACATGGCTGCCCAACCT 60.283 61.111 17.53 0.00 46.14 3.50
2367 4155 1.909781 CACATGGCTGCCCAACCTT 60.910 57.895 17.53 0.00 46.14 3.50
2368 4156 0.611618 CACATGGCTGCCCAACCTTA 60.612 55.000 17.53 0.00 46.14 2.69
2369 4157 0.611896 ACATGGCTGCCCAACCTTAC 60.612 55.000 17.53 0.00 46.14 2.34
2370 4158 0.611618 CATGGCTGCCCAACCTTACA 60.612 55.000 17.53 0.00 46.14 2.41
2371 4159 0.611896 ATGGCTGCCCAACCTTACAC 60.612 55.000 17.53 0.00 46.14 2.90
2372 4160 2.332654 GGCTGCCCAACCTTACACG 61.333 63.158 7.66 0.00 0.00 4.49
2373 4161 2.978018 GCTGCCCAACCTTACACGC 61.978 63.158 0.00 0.00 0.00 5.34
2374 4162 2.281900 TGCCCAACCTTACACGCC 60.282 61.111 0.00 0.00 0.00 5.68
2375 4163 3.060000 GCCCAACCTTACACGCCC 61.060 66.667 0.00 0.00 0.00 6.13
2376 4164 2.432563 CCCAACCTTACACGCCCA 59.567 61.111 0.00 0.00 0.00 5.36
2377 4165 1.674322 CCCAACCTTACACGCCCAG 60.674 63.158 0.00 0.00 0.00 4.45
2378 4166 2.332654 CCAACCTTACACGCCCAGC 61.333 63.158 0.00 0.00 0.00 4.85
2379 4167 1.302511 CAACCTTACACGCCCAGCT 60.303 57.895 0.00 0.00 0.00 4.24
2380 4168 1.003718 AACCTTACACGCCCAGCTC 60.004 57.895 0.00 0.00 0.00 4.09
2381 4169 2.509336 CCTTACACGCCCAGCTCG 60.509 66.667 0.00 0.00 0.00 5.03
2382 4170 2.261671 CTTACACGCCCAGCTCGT 59.738 61.111 0.00 0.00 41.28 4.18
2383 4171 1.805945 CTTACACGCCCAGCTCGTC 60.806 63.158 0.00 0.00 38.19 4.20
2384 4172 3.291101 TTACACGCCCAGCTCGTCC 62.291 63.158 0.00 0.00 38.19 4.79
2386 4174 2.825075 TACACGCCCAGCTCGTCCTA 62.825 60.000 0.00 0.00 38.19 2.94
2387 4175 3.141488 ACGCCCAGCTCGTCCTAG 61.141 66.667 0.00 0.00 34.84 3.02
2388 4176 3.141488 CGCCCAGCTCGTCCTAGT 61.141 66.667 0.00 0.00 0.00 2.57
2389 4177 2.496817 GCCCAGCTCGTCCTAGTG 59.503 66.667 0.00 0.00 0.00 2.74
2390 4178 2.052690 GCCCAGCTCGTCCTAGTGA 61.053 63.158 0.00 0.00 0.00 3.41
2391 4179 1.395826 GCCCAGCTCGTCCTAGTGAT 61.396 60.000 0.00 0.00 0.00 3.06
2392 4180 0.671251 CCCAGCTCGTCCTAGTGATC 59.329 60.000 0.00 0.00 0.00 2.92
2393 4181 1.393603 CCAGCTCGTCCTAGTGATCA 58.606 55.000 0.00 0.00 0.00 2.92
2394 4182 1.751351 CCAGCTCGTCCTAGTGATCAA 59.249 52.381 0.00 0.00 0.00 2.57
2395 4183 2.223688 CCAGCTCGTCCTAGTGATCAAG 60.224 54.545 0.00 0.00 0.00 3.02
2396 4184 1.407258 AGCTCGTCCTAGTGATCAAGC 59.593 52.381 0.00 0.00 0.00 4.01
2397 4185 1.407258 GCTCGTCCTAGTGATCAAGCT 59.593 52.381 0.00 0.00 0.00 3.74
2398 4186 2.542824 GCTCGTCCTAGTGATCAAGCTC 60.543 54.545 0.00 0.00 0.00 4.09
2399 4187 2.025155 TCGTCCTAGTGATCAAGCTCC 58.975 52.381 0.00 0.00 0.00 4.70
2400 4188 1.067821 CGTCCTAGTGATCAAGCTCCC 59.932 57.143 0.00 0.00 0.00 4.30
2401 4189 2.393646 GTCCTAGTGATCAAGCTCCCT 58.606 52.381 0.00 0.00 0.00 4.20
2402 4190 2.102252 GTCCTAGTGATCAAGCTCCCTG 59.898 54.545 0.00 0.00 0.00 4.45
2403 4191 1.202627 CCTAGTGATCAAGCTCCCTGC 60.203 57.143 0.00 0.00 43.29 4.85
2404 4192 0.833287 TAGTGATCAAGCTCCCTGCC 59.167 55.000 0.00 0.00 44.23 4.85
2405 4193 0.913451 AGTGATCAAGCTCCCTGCCT 60.913 55.000 0.00 0.00 44.23 4.75
2406 4194 0.034670 GTGATCAAGCTCCCTGCCTT 60.035 55.000 0.00 0.00 44.23 4.35
2407 4195 0.034767 TGATCAAGCTCCCTGCCTTG 60.035 55.000 0.00 0.00 44.23 3.61
2408 4196 1.379576 ATCAAGCTCCCTGCCTTGC 60.380 57.895 0.00 0.00 44.23 4.01
2409 4197 2.146146 ATCAAGCTCCCTGCCTTGCA 62.146 55.000 0.00 0.00 44.23 4.08
2410 4198 1.904865 CAAGCTCCCTGCCTTGCAA 60.905 57.895 0.00 0.00 44.23 4.08
2411 4199 1.905354 AAGCTCCCTGCCTTGCAAC 60.905 57.895 0.00 0.00 44.23 4.17
2412 4200 3.376918 GCTCCCTGCCTTGCAACC 61.377 66.667 0.00 0.00 38.41 3.77
2413 4201 3.058160 CTCCCTGCCTTGCAACCG 61.058 66.667 0.00 0.00 38.41 4.44
2423 4211 4.071459 TGCAACCGCATACAGCAA 57.929 50.000 0.00 0.00 45.36 3.91
2424 4212 2.565647 TGCAACCGCATACAGCAAT 58.434 47.368 0.00 0.00 45.36 3.56
2425 4213 1.743996 TGCAACCGCATACAGCAATA 58.256 45.000 0.00 0.00 45.36 1.90
2426 4214 1.670295 TGCAACCGCATACAGCAATAG 59.330 47.619 0.00 0.00 45.36 1.73
2427 4215 1.002468 GCAACCGCATACAGCAATAGG 60.002 52.381 0.00 0.00 46.13 2.57
2428 4216 2.288666 CAACCGCATACAGCAATAGGT 58.711 47.619 0.00 0.00 46.13 3.08
2429 4217 3.462982 CAACCGCATACAGCAATAGGTA 58.537 45.455 0.00 0.00 46.13 3.08
2430 4218 3.107642 ACCGCATACAGCAATAGGTAC 57.892 47.619 0.00 0.00 46.13 3.34
2431 4219 2.224209 ACCGCATACAGCAATAGGTACC 60.224 50.000 2.73 2.73 46.13 3.34
2432 4220 2.037251 CCGCATACAGCAATAGGTACCT 59.963 50.000 20.57 20.57 46.13 3.08
2433 4221 3.059884 CGCATACAGCAATAGGTACCTG 58.940 50.000 25.33 10.05 46.13 4.00
2434 4222 2.808543 GCATACAGCAATAGGTACCTGC 59.191 50.000 25.33 19.73 44.79 4.85
2435 4223 3.744214 GCATACAGCAATAGGTACCTGCA 60.744 47.826 25.33 5.65 44.79 4.41
2436 4224 2.698855 ACAGCAATAGGTACCTGCAG 57.301 50.000 25.33 18.48 38.58 4.41
2437 4225 1.303309 CAGCAATAGGTACCTGCAGC 58.697 55.000 25.33 22.35 38.58 5.25
2438 4226 1.134280 CAGCAATAGGTACCTGCAGCT 60.134 52.381 25.33 24.06 38.58 4.24
2439 4227 1.561542 AGCAATAGGTACCTGCAGCTT 59.438 47.619 25.33 11.29 38.58 3.74
2440 4228 1.672881 GCAATAGGTACCTGCAGCTTG 59.327 52.381 25.33 18.18 36.09 4.01
2441 4229 2.680805 GCAATAGGTACCTGCAGCTTGA 60.681 50.000 25.33 1.40 36.09 3.02
2442 4230 2.939103 CAATAGGTACCTGCAGCTTGAC 59.061 50.000 25.33 2.58 0.00 3.18
2443 4231 1.639722 TAGGTACCTGCAGCTTGACA 58.360 50.000 25.33 0.00 0.00 3.58
2444 4232 0.987294 AGGTACCTGCAGCTTGACAT 59.013 50.000 15.42 0.00 0.00 3.06
2450 4238 3.221771 ACCTGCAGCTTGACATTACAAA 58.778 40.909 8.66 0.00 0.00 2.83
2481 4269 1.134753 CAACAGTTTCAGGTTGCAGCA 59.865 47.619 2.05 0.00 38.08 4.41
2508 4296 8.884323 TCACCAAATCAAAGAGCTCCTATATAT 58.116 33.333 10.93 0.00 0.00 0.86
2509 4297 8.944029 CACCAAATCAAAGAGCTCCTATATATG 58.056 37.037 10.93 2.93 0.00 1.78
2515 4303 8.060931 TCAAAGAGCTCCTATATATGCTACTG 57.939 38.462 10.93 0.00 35.76 2.74
2592 4380 1.021202 AACAATGACACACCCACACG 58.979 50.000 0.00 0.00 0.00 4.49
2599 4387 3.070748 TGACACACCCACACGAATAATG 58.929 45.455 0.00 0.00 0.00 1.90
2605 4393 6.207810 ACACACCCACACGAATAATGTTTATT 59.792 34.615 0.00 0.00 0.00 1.40
2668 7488 8.598075 GGTCTATTTTGTATACAACTTACGGTG 58.402 37.037 17.85 4.12 35.28 4.94
2681 7501 6.653320 ACAACTTACGGTGTTTCATGTATCAT 59.347 34.615 0.00 0.00 0.00 2.45
2723 7543 4.107622 CCTTTGCTCTTGTTTCTGTGTTG 58.892 43.478 0.00 0.00 0.00 3.33
2724 7544 4.142403 CCTTTGCTCTTGTTTCTGTGTTGA 60.142 41.667 0.00 0.00 0.00 3.18
2725 7545 5.384063 TTTGCTCTTGTTTCTGTGTTGAA 57.616 34.783 0.00 0.00 0.00 2.69
2726 7546 4.355543 TGCTCTTGTTTCTGTGTTGAAC 57.644 40.909 0.00 0.00 0.00 3.18
2727 7547 3.755905 TGCTCTTGTTTCTGTGTTGAACA 59.244 39.130 0.00 0.00 37.22 3.18
2728 7548 4.217334 TGCTCTTGTTTCTGTGTTGAACAA 59.783 37.500 0.00 0.00 38.67 2.83
2729 7549 4.795278 GCTCTTGTTTCTGTGTTGAACAAG 59.205 41.667 17.51 17.51 38.67 3.16
2730 7550 5.309323 TCTTGTTTCTGTGTTGAACAAGG 57.691 39.130 21.16 0.00 38.67 3.61
2731 7551 4.764823 TCTTGTTTCTGTGTTGAACAAGGT 59.235 37.500 21.16 0.00 38.67 3.50
2732 7552 4.433186 TGTTTCTGTGTTGAACAAGGTG 57.567 40.909 0.00 0.00 38.67 4.00
2733 7553 4.075682 TGTTTCTGTGTTGAACAAGGTGA 58.924 39.130 0.00 0.00 38.67 4.02
2734 7554 4.704540 TGTTTCTGTGTTGAACAAGGTGAT 59.295 37.500 0.00 0.00 38.67 3.06
2735 7555 5.184864 TGTTTCTGTGTTGAACAAGGTGATT 59.815 36.000 0.00 0.00 38.67 2.57
2736 7556 4.898829 TCTGTGTTGAACAAGGTGATTG 57.101 40.909 0.00 0.00 45.01 2.67
2746 7566 2.688507 CAAGGTGATTGTGTCGCTACT 58.311 47.619 0.00 0.00 37.50 2.57
2747 7567 3.845178 CAAGGTGATTGTGTCGCTACTA 58.155 45.455 0.00 0.00 37.50 1.82
2748 7568 3.505464 AGGTGATTGTGTCGCTACTAC 57.495 47.619 0.00 0.00 37.50 2.73
2749 7569 2.165845 AGGTGATTGTGTCGCTACTACC 59.834 50.000 0.00 0.00 37.50 3.18
2750 7570 2.094390 GGTGATTGTGTCGCTACTACCA 60.094 50.000 0.00 0.00 37.50 3.25
2751 7571 3.581755 GTGATTGTGTCGCTACTACCAA 58.418 45.455 0.00 0.00 34.46 3.67
2752 7572 3.991773 GTGATTGTGTCGCTACTACCAAA 59.008 43.478 0.00 0.00 34.46 3.28
2753 7573 4.449743 GTGATTGTGTCGCTACTACCAAAA 59.550 41.667 0.00 0.00 34.46 2.44
2754 7574 5.121768 GTGATTGTGTCGCTACTACCAAAAT 59.878 40.000 0.00 0.00 34.46 1.82
2755 7575 5.121611 TGATTGTGTCGCTACTACCAAAATG 59.878 40.000 0.00 0.00 0.00 2.32
2756 7576 2.739913 TGTGTCGCTACTACCAAAATGC 59.260 45.455 0.00 0.00 0.00 3.56
2757 7577 1.996898 TGTCGCTACTACCAAAATGCG 59.003 47.619 0.00 0.00 43.95 4.73
2759 7579 3.173668 TCGCTACTACCAAAATGCGAT 57.826 42.857 3.75 0.00 45.74 4.58
2760 7580 2.863740 TCGCTACTACCAAAATGCGATG 59.136 45.455 3.75 0.00 45.74 3.84
2761 7581 2.032894 CGCTACTACCAAAATGCGATGG 60.033 50.000 0.00 0.00 45.15 3.51
2762 7582 2.290641 GCTACTACCAAAATGCGATGGG 59.709 50.000 0.00 0.00 41.17 4.00
2763 7583 1.762708 ACTACCAAAATGCGATGGGG 58.237 50.000 0.00 0.00 41.17 4.96
2764 7584 0.385390 CTACCAAAATGCGATGGGGC 59.615 55.000 0.00 0.00 41.17 5.80
2765 7585 0.033601 TACCAAAATGCGATGGGGCT 60.034 50.000 0.00 0.00 41.17 5.19
2766 7586 1.142314 CCAAAATGCGATGGGGCTG 59.858 57.895 0.00 0.00 32.87 4.85
2767 7587 1.606885 CCAAAATGCGATGGGGCTGT 61.607 55.000 0.00 0.00 32.87 4.40
2768 7588 0.458889 CAAAATGCGATGGGGCTGTG 60.459 55.000 0.00 0.00 0.00 3.66
2769 7589 1.606885 AAAATGCGATGGGGCTGTGG 61.607 55.000 0.00 0.00 0.00 4.17
2770 7590 2.497792 AAATGCGATGGGGCTGTGGA 62.498 55.000 0.00 0.00 0.00 4.02
2771 7591 2.288642 AATGCGATGGGGCTGTGGAT 62.289 55.000 0.00 0.00 0.00 3.41
2772 7592 1.418097 ATGCGATGGGGCTGTGGATA 61.418 55.000 0.00 0.00 0.00 2.59
2773 7593 1.376466 GCGATGGGGCTGTGGATAT 59.624 57.895 0.00 0.00 0.00 1.63
2774 7594 0.613260 GCGATGGGGCTGTGGATATA 59.387 55.000 0.00 0.00 0.00 0.86
2775 7595 1.676014 GCGATGGGGCTGTGGATATAC 60.676 57.143 0.00 0.00 0.00 1.47
2776 7596 1.404181 CGATGGGGCTGTGGATATACG 60.404 57.143 0.00 0.00 0.00 3.06
2777 7597 1.623811 GATGGGGCTGTGGATATACGT 59.376 52.381 0.00 0.00 0.00 3.57
2778 7598 0.756294 TGGGGCTGTGGATATACGTG 59.244 55.000 0.00 0.00 0.00 4.49
2779 7599 1.045407 GGGGCTGTGGATATACGTGA 58.955 55.000 0.00 0.00 0.00 4.35
2780 7600 1.270147 GGGGCTGTGGATATACGTGAC 60.270 57.143 0.00 0.00 0.00 3.67
2781 7601 1.687123 GGGCTGTGGATATACGTGACT 59.313 52.381 0.00 0.00 0.00 3.41
2782 7602 2.889045 GGGCTGTGGATATACGTGACTA 59.111 50.000 0.00 0.00 0.00 2.59
2783 7603 3.305199 GGGCTGTGGATATACGTGACTAC 60.305 52.174 0.00 0.00 0.00 2.73
2784 7604 3.305199 GGCTGTGGATATACGTGACTACC 60.305 52.174 0.00 0.00 0.00 3.18
2785 7605 3.568853 GCTGTGGATATACGTGACTACCT 59.431 47.826 0.00 0.00 0.00 3.08
2786 7606 4.037684 GCTGTGGATATACGTGACTACCTT 59.962 45.833 0.00 0.00 0.00 3.50
2787 7607 5.759963 CTGTGGATATACGTGACTACCTTC 58.240 45.833 0.00 0.00 0.00 3.46
2788 7608 5.443283 TGTGGATATACGTGACTACCTTCT 58.557 41.667 0.00 0.00 0.00 2.85
2789 7609 5.298527 TGTGGATATACGTGACTACCTTCTG 59.701 44.000 0.00 0.00 0.00 3.02
2790 7610 4.825634 TGGATATACGTGACTACCTTCTGG 59.174 45.833 0.00 0.00 39.83 3.86
2800 7620 2.544768 ACCTTCTGGTGAGCCTTGT 58.455 52.632 0.00 0.00 46.51 3.16
2801 7621 0.109342 ACCTTCTGGTGAGCCTTGTG 59.891 55.000 0.00 0.00 46.51 3.33
2802 7622 1.239968 CCTTCTGGTGAGCCTTGTGC 61.240 60.000 0.00 0.00 41.71 4.57
2803 7623 0.535780 CTTCTGGTGAGCCTTGTGCA 60.536 55.000 0.00 0.00 44.83 4.57
2804 7624 0.111061 TTCTGGTGAGCCTTGTGCAT 59.889 50.000 0.00 0.00 44.83 3.96
2805 7625 0.607217 TCTGGTGAGCCTTGTGCATG 60.607 55.000 0.00 0.00 44.83 4.06
2806 7626 1.592400 CTGGTGAGCCTTGTGCATGG 61.592 60.000 0.00 0.00 44.83 3.66
2807 7627 1.303561 GGTGAGCCTTGTGCATGGA 60.304 57.895 8.11 0.00 44.83 3.41
2808 7628 1.310933 GGTGAGCCTTGTGCATGGAG 61.311 60.000 8.11 0.00 44.83 3.86
2809 7629 1.676635 TGAGCCTTGTGCATGGAGC 60.677 57.895 8.11 1.13 44.83 4.70
2818 7638 4.547859 GCATGGAGCGGTCAAGAT 57.452 55.556 17.59 2.06 0.00 2.40
2819 7639 2.315246 GCATGGAGCGGTCAAGATC 58.685 57.895 17.59 0.00 0.00 2.75
2820 7640 0.179062 GCATGGAGCGGTCAAGATCT 60.179 55.000 17.59 0.00 0.00 2.75
2821 7641 1.745141 GCATGGAGCGGTCAAGATCTT 60.745 52.381 17.59 0.88 0.00 2.40
2822 7642 2.208431 CATGGAGCGGTCAAGATCTTC 58.792 52.381 17.59 0.00 0.00 2.87
2823 7643 0.173481 TGGAGCGGTCAAGATCTTCG 59.827 55.000 17.59 7.83 0.00 3.79
2824 7644 0.456221 GGAGCGGTCAAGATCTTCGA 59.544 55.000 17.59 10.36 0.00 3.71
2825 7645 1.535015 GGAGCGGTCAAGATCTTCGAG 60.535 57.143 17.59 2.53 0.00 4.04
2826 7646 1.402259 GAGCGGTCAAGATCTTCGAGA 59.598 52.381 16.64 4.79 0.00 4.04
2827 7647 1.819288 AGCGGTCAAGATCTTCGAGAA 59.181 47.619 16.64 0.00 0.00 2.87
2828 7648 2.231478 AGCGGTCAAGATCTTCGAGAAA 59.769 45.455 16.64 0.00 0.00 2.52
2829 7649 2.600867 GCGGTCAAGATCTTCGAGAAAG 59.399 50.000 16.64 6.20 36.22 2.62
2830 7650 3.839293 CGGTCAAGATCTTCGAGAAAGT 58.161 45.455 4.57 0.00 36.31 2.66
2831 7651 4.238514 CGGTCAAGATCTTCGAGAAAGTT 58.761 43.478 4.57 0.00 36.31 2.66
2832 7652 4.324936 CGGTCAAGATCTTCGAGAAAGTTC 59.675 45.833 4.57 0.00 36.31 3.01
2833 7653 5.474825 GGTCAAGATCTTCGAGAAAGTTCT 58.525 41.667 4.57 0.00 43.04 3.01
2834 7654 5.347364 GGTCAAGATCTTCGAGAAAGTTCTG 59.653 44.000 4.57 0.00 41.24 3.02
2835 7655 5.347364 GTCAAGATCTTCGAGAAAGTTCTGG 59.653 44.000 4.57 0.00 41.24 3.86
2836 7656 3.855858 AGATCTTCGAGAAAGTTCTGGC 58.144 45.455 0.00 0.00 40.80 4.85
2837 7657 2.457366 TCTTCGAGAAAGTTCTGGCC 57.543 50.000 0.00 0.00 37.73 5.36
2838 7658 1.691976 TCTTCGAGAAAGTTCTGGCCA 59.308 47.619 4.71 4.71 37.73 5.36
2839 7659 2.303022 TCTTCGAGAAAGTTCTGGCCAT 59.697 45.455 5.51 0.00 37.73 4.40
2840 7660 2.099141 TCGAGAAAGTTCTGGCCATG 57.901 50.000 5.51 0.00 37.73 3.66
2841 7661 1.623311 TCGAGAAAGTTCTGGCCATGA 59.377 47.619 5.51 2.85 37.73 3.07
2842 7662 2.005451 CGAGAAAGTTCTGGCCATGAG 58.995 52.381 5.51 0.00 37.73 2.90
2843 7663 2.363683 GAGAAAGTTCTGGCCATGAGG 58.636 52.381 5.51 0.00 37.73 3.86
2844 7664 1.707427 AGAAAGTTCTGGCCATGAGGT 59.293 47.619 5.51 0.00 35.89 3.85
2845 7665 2.108952 AGAAAGTTCTGGCCATGAGGTT 59.891 45.455 5.51 0.00 35.89 3.50
2846 7666 1.915141 AAGTTCTGGCCATGAGGTTG 58.085 50.000 5.51 0.00 37.19 3.77
2847 7667 0.038744 AGTTCTGGCCATGAGGTTGG 59.961 55.000 5.51 0.00 39.94 3.77
2858 7678 3.887335 GAGGTTGGCCGCGGTGTTA 62.887 63.158 28.70 7.89 40.50 2.41
2859 7679 3.729698 GGTTGGCCGCGGTGTTAC 61.730 66.667 28.70 18.61 0.00 2.50
2860 7680 3.729698 GTTGGCCGCGGTGTTACC 61.730 66.667 28.70 19.37 34.05 2.85
2893 7713 1.392589 CACCACCAGAGTGCTTTTGT 58.607 50.000 0.00 0.00 43.09 2.83
2894 7714 1.334869 CACCACCAGAGTGCTTTTGTC 59.665 52.381 0.00 0.00 43.09 3.18
2895 7715 0.954452 CCACCAGAGTGCTTTTGTCC 59.046 55.000 0.00 0.00 43.09 4.02
2896 7716 0.588252 CACCAGAGTGCTTTTGTCCG 59.412 55.000 0.00 0.00 37.14 4.79
2897 7717 0.468226 ACCAGAGTGCTTTTGTCCGA 59.532 50.000 0.00 0.00 0.00 4.55
2898 7718 1.151668 CCAGAGTGCTTTTGTCCGAG 58.848 55.000 0.00 0.00 0.00 4.63
2899 7719 1.151668 CAGAGTGCTTTTGTCCGAGG 58.848 55.000 0.00 0.00 0.00 4.63
2900 7720 0.603975 AGAGTGCTTTTGTCCGAGGC 60.604 55.000 0.00 0.00 0.00 4.70
2901 7721 1.578206 GAGTGCTTTTGTCCGAGGCC 61.578 60.000 0.00 0.00 0.00 5.19
2902 7722 1.896660 GTGCTTTTGTCCGAGGCCA 60.897 57.895 5.01 0.00 0.00 5.36
2903 7723 1.074775 TGCTTTTGTCCGAGGCCAT 59.925 52.632 5.01 0.00 0.00 4.40
2904 7724 0.539438 TGCTTTTGTCCGAGGCCATT 60.539 50.000 5.01 0.00 0.00 3.16
2905 7725 0.171231 GCTTTTGTCCGAGGCCATTC 59.829 55.000 5.01 0.00 0.00 2.67
2906 7726 0.811281 CTTTTGTCCGAGGCCATTCC 59.189 55.000 5.01 0.00 0.00 3.01
2915 7735 3.939710 AGGCCATTCCTTGCATGAT 57.060 47.368 5.01 0.00 44.75 2.45
2917 7737 3.317455 AGGCCATTCCTTGCATGATAA 57.683 42.857 5.01 0.00 44.75 1.75
2918 7738 3.853207 AGGCCATTCCTTGCATGATAAT 58.147 40.909 5.01 0.00 44.75 1.28
2919 7739 4.228824 AGGCCATTCCTTGCATGATAATT 58.771 39.130 5.01 0.00 44.75 1.40
2920 7740 4.657039 AGGCCATTCCTTGCATGATAATTT 59.343 37.500 5.01 0.00 44.75 1.82
2921 7741 4.992951 GGCCATTCCTTGCATGATAATTTC 59.007 41.667 0.00 0.00 0.00 2.17
2922 7742 5.453621 GGCCATTCCTTGCATGATAATTTCA 60.454 40.000 0.00 0.00 39.12 2.69
2923 7743 6.228258 GCCATTCCTTGCATGATAATTTCAT 58.772 36.000 0.00 0.00 46.27 2.57
2944 7764 4.347453 GGTGCAAGCCACGGCAAG 62.347 66.667 11.35 3.05 45.62 4.01
2945 7765 4.347453 GTGCAAGCCACGGCAAGG 62.347 66.667 11.35 0.00 42.45 3.61
2952 7772 2.746277 CCACGGCAAGGCACCTAC 60.746 66.667 0.00 0.00 0.00 3.18
2953 7773 2.031919 CACGGCAAGGCACCTACA 59.968 61.111 0.00 0.00 0.00 2.74
2954 7774 1.377202 CACGGCAAGGCACCTACAT 60.377 57.895 0.00 0.00 0.00 2.29
2955 7775 1.377202 ACGGCAAGGCACCTACATG 60.377 57.895 0.00 0.00 0.00 3.21
2956 7776 2.764314 CGGCAAGGCACCTACATGC 61.764 63.158 3.66 3.66 45.34 4.06
2962 7782 3.889227 GCACCTACATGCGCTCAA 58.111 55.556 9.73 0.00 35.50 3.02
2963 7783 1.717937 GCACCTACATGCGCTCAAG 59.282 57.895 9.73 0.45 35.50 3.02
2964 7784 1.709147 GCACCTACATGCGCTCAAGG 61.709 60.000 9.73 12.73 35.50 3.61
2965 7785 0.391661 CACCTACATGCGCTCAAGGT 60.392 55.000 9.73 13.41 41.24 3.50
2966 7786 0.391661 ACCTACATGCGCTCAAGGTG 60.392 55.000 18.95 7.46 39.10 4.00
2972 7792 3.286751 GCGCTCAAGGTGCCAACA 61.287 61.111 0.00 0.00 44.87 3.33
2973 7793 2.844451 GCGCTCAAGGTGCCAACAA 61.844 57.895 0.00 0.00 44.87 2.83
2974 7794 1.959085 CGCTCAAGGTGCCAACAAT 59.041 52.632 0.00 0.00 0.00 2.71
2975 7795 0.314935 CGCTCAAGGTGCCAACAATT 59.685 50.000 0.00 0.00 0.00 2.32
2976 7796 1.539388 CGCTCAAGGTGCCAACAATTA 59.461 47.619 0.00 0.00 0.00 1.40
2977 7797 2.164219 CGCTCAAGGTGCCAACAATTAT 59.836 45.455 0.00 0.00 0.00 1.28
2978 7798 3.514645 GCTCAAGGTGCCAACAATTATG 58.485 45.455 0.00 0.00 0.00 1.90
2979 7799 3.514645 CTCAAGGTGCCAACAATTATGC 58.485 45.455 0.00 0.00 0.00 3.14
2980 7800 3.164268 TCAAGGTGCCAACAATTATGCT 58.836 40.909 0.00 0.00 0.00 3.79
2981 7801 3.577848 TCAAGGTGCCAACAATTATGCTT 59.422 39.130 0.00 0.00 0.00 3.91
2982 7802 4.769488 TCAAGGTGCCAACAATTATGCTTA 59.231 37.500 0.00 0.00 0.00 3.09
2983 7803 5.244851 TCAAGGTGCCAACAATTATGCTTAA 59.755 36.000 0.00 0.00 0.00 1.85
2984 7804 5.736951 AGGTGCCAACAATTATGCTTAAA 57.263 34.783 0.00 0.00 0.00 1.52
2985 7805 5.478407 AGGTGCCAACAATTATGCTTAAAC 58.522 37.500 0.00 0.00 0.00 2.01
2986 7806 5.245977 AGGTGCCAACAATTATGCTTAAACT 59.754 36.000 0.00 0.00 0.00 2.66
2987 7807 5.931724 GGTGCCAACAATTATGCTTAAACTT 59.068 36.000 0.00 0.00 0.00 2.66
2988 7808 6.128580 GGTGCCAACAATTATGCTTAAACTTG 60.129 38.462 0.00 1.01 0.00 3.16
2989 7809 6.644592 GTGCCAACAATTATGCTTAAACTTGA 59.355 34.615 10.86 0.00 0.00 3.02
2990 7810 6.644592 TGCCAACAATTATGCTTAAACTTGAC 59.355 34.615 10.86 1.81 0.00 3.18
2991 7811 6.644592 GCCAACAATTATGCTTAAACTTGACA 59.355 34.615 10.86 0.00 0.00 3.58
2992 7812 7.331687 GCCAACAATTATGCTTAAACTTGACAT 59.668 33.333 10.86 0.00 0.00 3.06
2993 7813 9.853555 CCAACAATTATGCTTAAACTTGACATA 57.146 29.630 10.86 0.00 0.00 2.29
3002 7822 8.492673 TGCTTAAACTTGACATATCTAAGGTG 57.507 34.615 0.00 0.00 0.00 4.00
3003 7823 8.100791 TGCTTAAACTTGACATATCTAAGGTGT 58.899 33.333 0.00 0.00 0.00 4.16
3004 7824 8.947115 GCTTAAACTTGACATATCTAAGGTGTT 58.053 33.333 0.00 0.00 0.00 3.32
3007 7827 8.918202 AAACTTGACATATCTAAGGTGTTTGA 57.082 30.769 0.00 0.00 0.00 2.69
3008 7828 7.907214 ACTTGACATATCTAAGGTGTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
3009 7829 7.680730 ACTTGACATATCTAAGGTGTTTGACT 58.319 34.615 0.00 0.00 0.00 3.41
3010 7830 7.819900 ACTTGACATATCTAAGGTGTTTGACTC 59.180 37.037 0.00 0.00 0.00 3.36
3011 7831 6.640518 TGACATATCTAAGGTGTTTGACTCC 58.359 40.000 0.00 0.00 32.16 3.85
3012 7832 6.212589 TGACATATCTAAGGTGTTTGACTCCA 59.787 38.462 2.48 0.00 34.35 3.86
3013 7833 7.092891 TGACATATCTAAGGTGTTTGACTCCAT 60.093 37.037 2.48 0.00 34.35 3.41
3014 7834 7.633789 ACATATCTAAGGTGTTTGACTCCATT 58.366 34.615 2.48 0.00 34.35 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.338249 CGATCTGTGGGTTTTGTGAGAT 58.662 45.455 0.00 0.00 0.00 2.75
164 167 4.748239 GCCCCTTAAAGGCCAAATTTTTGA 60.748 41.667 5.01 0.00 45.16 2.69
165 168 3.505680 GCCCCTTAAAGGCCAAATTTTTG 59.494 43.478 5.01 0.00 45.16 2.44
176 179 0.106967 GGAGCTCAGCCCCTTAAAGG 60.107 60.000 17.19 0.00 34.30 3.11
180 183 1.072266 TTTTGGAGCTCAGCCCCTTA 58.928 50.000 17.19 0.00 0.00 2.69
181 184 0.411058 ATTTTGGAGCTCAGCCCCTT 59.589 50.000 17.19 0.00 0.00 3.95
188 192 0.881118 GAACGGCATTTTGGAGCTCA 59.119 50.000 17.19 0.00 0.00 4.26
204 208 3.669251 AGTGTCAAGCTGTAGGAGAAC 57.331 47.619 0.00 0.00 0.00 3.01
364 1584 7.174746 GCGTATGTTTGTGTCGAATTGTATAA 58.825 34.615 0.00 0.00 0.00 0.98
385 1605 1.090625 GTGTGTGTTGTGGTGGCGTA 61.091 55.000 0.00 0.00 0.00 4.42
447 1667 5.375417 TGATGTTTGCTTGGAGTTGTATG 57.625 39.130 0.00 0.00 0.00 2.39
499 1719 3.170672 CCATGATGAGGCCCCCGA 61.171 66.667 0.00 0.00 0.00 5.14
505 1725 0.394762 TGGCTTGTCCATGATGAGGC 60.395 55.000 0.00 0.00 40.72 4.70
536 1756 1.159285 CTTCATCTTGCACGGCTTCA 58.841 50.000 0.00 0.00 0.00 3.02
555 1775 0.606673 GTTGTCTTCCTGAGCCCACC 60.607 60.000 0.00 0.00 0.00 4.61
566 1801 3.636764 ACTGGATTGGGTTTGTTGTCTTC 59.363 43.478 0.00 0.00 0.00 2.87
578 1813 6.223852 GTCTGTATATACACACTGGATTGGG 58.776 44.000 11.62 0.00 31.93 4.12
582 1817 5.507482 GCACGTCTGTATATACACACTGGAT 60.507 44.000 16.27 0.98 31.93 3.41
584 1819 4.042398 GCACGTCTGTATATACACACTGG 58.958 47.826 16.27 10.49 31.93 4.00
587 1822 2.466571 GCGCACGTCTGTATATACACAC 59.533 50.000 11.62 10.91 31.93 3.82
635 2073 4.823790 TTTTAAACTGAAGCCGGTTCTC 57.176 40.909 11.43 0.00 40.81 2.87
659 2097 6.571150 GCAACTCTGAAGCTGGTCAATATTTT 60.571 38.462 0.00 0.00 0.00 1.82
660 2098 5.105997 GCAACTCTGAAGCTGGTCAATATTT 60.106 40.000 0.00 0.00 0.00 1.40
710 2155 6.042437 ACTGAAAATGAAAAGGAATCCAAGCT 59.958 34.615 0.61 0.00 0.00 3.74
831 2362 2.430465 GTGACTACGTCTAGTCCACCA 58.570 52.381 14.38 0.00 46.03 4.17
848 2388 1.454653 CGCTATCGATCGTCTACGTGA 59.545 52.381 15.94 0.00 38.09 4.35
849 2389 1.191868 ACGCTATCGATCGTCTACGTG 59.808 52.381 21.23 13.27 38.72 4.49
850 2390 1.495878 ACGCTATCGATCGTCTACGT 58.504 50.000 15.94 17.25 38.72 3.57
851 2391 2.573880 AACGCTATCGATCGTCTACG 57.426 50.000 15.94 16.64 38.03 3.51
852 2392 4.084641 ACTGTAACGCTATCGATCGTCTAC 60.085 45.833 15.94 14.61 38.03 2.59
853 2393 4.053983 ACTGTAACGCTATCGATCGTCTA 58.946 43.478 15.94 7.43 38.03 2.59
854 2394 2.871022 ACTGTAACGCTATCGATCGTCT 59.129 45.455 15.94 6.60 38.03 4.18
855 2395 2.965414 CACTGTAACGCTATCGATCGTC 59.035 50.000 15.94 2.76 38.03 4.20
990 2546 1.425031 CGTGAACATCCGCACCATG 59.575 57.895 0.00 0.00 0.00 3.66
1168 2773 6.592607 ACACGAAAAAGACGGATACATACATT 59.407 34.615 0.00 0.00 34.93 2.71
1277 2908 2.048503 GCGTTGTAGTGGCGGAGT 60.049 61.111 0.00 0.00 0.00 3.85
1320 2951 1.817099 CCATGAGAGGCTTGACGGC 60.817 63.158 0.00 0.00 38.75 5.68
1503 3140 1.265095 GATGATGGCGCATGTTTCGAT 59.735 47.619 10.83 0.00 0.00 3.59
1580 3228 4.425180 TGCAAGTGTACCAGAAAAGGTA 57.575 40.909 0.00 0.00 43.08 3.08
1768 3424 1.686587 TGTCTCTTCTTTCCGCACAGA 59.313 47.619 0.00 0.00 0.00 3.41
1786 3442 1.898574 CTGCCCTTCGTTTGCCTGT 60.899 57.895 0.00 0.00 0.00 4.00
1838 3494 4.101790 CGTGGGGCATGTGAACGC 62.102 66.667 0.00 0.00 0.00 4.84
1906 3580 1.709203 GCGCTACTATGTTCGTCATCG 59.291 52.381 0.00 0.00 37.91 3.84
1909 3583 0.101759 GGGCGCTACTATGTTCGTCA 59.898 55.000 7.64 0.00 0.00 4.35
1910 3584 0.384669 AGGGCGCTACTATGTTCGTC 59.615 55.000 7.64 0.00 0.00 4.20
1911 3585 0.102481 CAGGGCGCTACTATGTTCGT 59.898 55.000 7.64 0.00 0.00 3.85
1912 3586 0.384309 TCAGGGCGCTACTATGTTCG 59.616 55.000 7.64 0.00 0.00 3.95
1940 3614 3.527665 CCTAGAAAATGAAAGGGGAGGGA 59.472 47.826 0.00 0.00 0.00 4.20
1960 3634 6.152831 GCAAAACCCTTGTAATAAGATGACCT 59.847 38.462 0.00 0.00 0.00 3.85
1964 3638 5.339990 CGGCAAAACCCTTGTAATAAGATG 58.660 41.667 0.00 0.00 33.26 2.90
2008 3685 1.808133 GCTTTGCCCCTGATCTAGTCG 60.808 57.143 0.00 0.00 0.00 4.18
2074 3753 4.697352 GGCCTTGCTATTACCATACATCAG 59.303 45.833 0.00 0.00 0.00 2.90
2147 3830 7.040961 AGTGCACGGTAAGTATACAAAATTGTT 60.041 33.333 12.01 0.00 42.35 2.83
2152 3835 6.864360 AAAGTGCACGGTAAGTATACAAAA 57.136 33.333 12.01 0.00 33.45 2.44
2163 3846 4.595762 AAAGAGAGTAAAGTGCACGGTA 57.404 40.909 12.01 4.75 0.00 4.02
2285 4073 3.370953 GGGTGTATGCCTTCTCTCACAAT 60.371 47.826 0.00 0.00 0.00 2.71
2327 4115 6.704493 TGTGAGGACTGAAAATTATATACCGC 59.296 38.462 0.00 0.00 0.00 5.68
2332 4120 7.230108 CAGCCATGTGAGGACTGAAAATTATAT 59.770 37.037 0.00 0.00 35.91 0.86
2333 4121 6.543465 CAGCCATGTGAGGACTGAAAATTATA 59.457 38.462 0.00 0.00 35.91 0.98
2335 4123 4.701651 CAGCCATGTGAGGACTGAAAATTA 59.298 41.667 0.00 0.00 35.91 1.40
2337 4125 3.087031 CAGCCATGTGAGGACTGAAAAT 58.913 45.455 0.00 0.00 35.91 1.82
2339 4127 1.883638 GCAGCCATGTGAGGACTGAAA 60.884 52.381 0.00 0.00 35.91 2.69
2340 4128 0.321919 GCAGCCATGTGAGGACTGAA 60.322 55.000 0.00 0.00 35.91 3.02
2341 4129 1.297689 GCAGCCATGTGAGGACTGA 59.702 57.895 0.00 0.00 35.91 3.41
2342 4130 1.748122 GGCAGCCATGTGAGGACTG 60.748 63.158 6.55 0.00 36.51 3.51
2345 4133 2.537203 TTGGGCAGCCATGTGAGGA 61.537 57.895 15.19 0.00 0.00 3.71
2346 4134 2.036098 TTGGGCAGCCATGTGAGG 59.964 61.111 15.19 0.00 0.00 3.86
2347 4135 2.345760 GGTTGGGCAGCCATGTGAG 61.346 63.158 15.19 0.00 0.00 3.51
2348 4136 2.283101 GGTTGGGCAGCCATGTGA 60.283 61.111 15.19 0.00 0.00 3.58
2349 4137 0.611618 TAAGGTTGGGCAGCCATGTG 60.612 55.000 15.19 0.00 33.73 3.21
2350 4138 0.611896 GTAAGGTTGGGCAGCCATGT 60.612 55.000 15.19 0.00 33.73 3.21
2351 4139 0.611618 TGTAAGGTTGGGCAGCCATG 60.612 55.000 15.19 0.00 33.73 3.66
2352 4140 0.611896 GTGTAAGGTTGGGCAGCCAT 60.612 55.000 15.19 0.00 33.73 4.40
2353 4141 1.228429 GTGTAAGGTTGGGCAGCCA 60.228 57.895 15.19 0.00 33.73 4.75
2354 4142 2.332654 CGTGTAAGGTTGGGCAGCC 61.333 63.158 1.26 1.26 0.00 4.85
2355 4143 2.978018 GCGTGTAAGGTTGGGCAGC 61.978 63.158 0.00 0.00 0.00 5.25
2356 4144 2.332654 GGCGTGTAAGGTTGGGCAG 61.333 63.158 0.00 0.00 0.00 4.85
2357 4145 2.281900 GGCGTGTAAGGTTGGGCA 60.282 61.111 0.00 0.00 0.00 5.36
2358 4146 3.060000 GGGCGTGTAAGGTTGGGC 61.060 66.667 0.00 0.00 0.00 5.36
2359 4147 1.674322 CTGGGCGTGTAAGGTTGGG 60.674 63.158 0.00 0.00 0.00 4.12
2360 4148 2.332654 GCTGGGCGTGTAAGGTTGG 61.333 63.158 0.00 0.00 0.00 3.77
2361 4149 1.298859 GAGCTGGGCGTGTAAGGTTG 61.299 60.000 0.00 0.00 0.00 3.77
2362 4150 1.003718 GAGCTGGGCGTGTAAGGTT 60.004 57.895 0.00 0.00 0.00 3.50
2363 4151 2.663196 GAGCTGGGCGTGTAAGGT 59.337 61.111 0.00 0.00 0.00 3.50
2364 4152 2.509336 CGAGCTGGGCGTGTAAGG 60.509 66.667 0.00 0.00 0.00 2.69
2365 4153 1.805945 GACGAGCTGGGCGTGTAAG 60.806 63.158 3.40 0.00 42.77 2.34
2366 4154 2.260434 GACGAGCTGGGCGTGTAA 59.740 61.111 3.40 0.00 42.77 2.41
2367 4155 2.825075 TAGGACGAGCTGGGCGTGTA 62.825 60.000 7.08 0.00 42.77 2.90
2369 4157 3.417275 CTAGGACGAGCTGGGCGTG 62.417 68.421 7.08 0.00 42.77 5.34
2370 4158 3.141488 CTAGGACGAGCTGGGCGT 61.141 66.667 1.42 1.42 45.79 5.68
2371 4159 3.141488 ACTAGGACGAGCTGGGCG 61.141 66.667 0.00 0.00 0.00 6.13
2372 4160 1.395826 ATCACTAGGACGAGCTGGGC 61.396 60.000 0.00 0.00 0.00 5.36
2373 4161 0.671251 GATCACTAGGACGAGCTGGG 59.329 60.000 0.00 0.00 0.00 4.45
2374 4162 1.393603 TGATCACTAGGACGAGCTGG 58.606 55.000 0.00 0.00 0.00 4.85
2375 4163 2.797792 GCTTGATCACTAGGACGAGCTG 60.798 54.545 0.00 0.00 0.00 4.24
2376 4164 1.407258 GCTTGATCACTAGGACGAGCT 59.593 52.381 0.00 0.00 0.00 4.09
2377 4165 1.407258 AGCTTGATCACTAGGACGAGC 59.593 52.381 0.00 0.00 0.00 5.03
2378 4166 2.034053 GGAGCTTGATCACTAGGACGAG 59.966 54.545 0.00 0.00 0.00 4.18
2379 4167 2.025155 GGAGCTTGATCACTAGGACGA 58.975 52.381 0.00 0.00 0.00 4.20
2380 4168 1.067821 GGGAGCTTGATCACTAGGACG 59.932 57.143 0.00 0.00 0.00 4.79
2381 4169 2.102252 CAGGGAGCTTGATCACTAGGAC 59.898 54.545 0.00 0.00 29.65 3.85
2382 4170 2.392662 CAGGGAGCTTGATCACTAGGA 58.607 52.381 0.00 0.00 29.65 2.94
2383 4171 1.202627 GCAGGGAGCTTGATCACTAGG 60.203 57.143 0.00 0.00 41.15 3.02
2384 4172 1.202627 GGCAGGGAGCTTGATCACTAG 60.203 57.143 0.00 0.00 44.79 2.57
2385 4173 0.833287 GGCAGGGAGCTTGATCACTA 59.167 55.000 0.00 0.00 44.79 2.74
2386 4174 0.913451 AGGCAGGGAGCTTGATCACT 60.913 55.000 0.00 0.00 44.79 3.41
2387 4175 0.034670 AAGGCAGGGAGCTTGATCAC 60.035 55.000 0.00 0.00 44.79 3.06
2388 4176 0.034767 CAAGGCAGGGAGCTTGATCA 60.035 55.000 0.00 0.00 44.79 2.92
2389 4177 1.382692 GCAAGGCAGGGAGCTTGATC 61.383 60.000 0.00 0.00 44.79 2.92
2390 4178 1.379576 GCAAGGCAGGGAGCTTGAT 60.380 57.895 0.00 0.00 44.79 2.57
2391 4179 2.034687 GCAAGGCAGGGAGCTTGA 59.965 61.111 0.00 0.00 44.79 3.02
2392 4180 1.904865 TTGCAAGGCAGGGAGCTTG 60.905 57.895 0.00 0.00 44.79 4.01
2393 4181 1.905354 GTTGCAAGGCAGGGAGCTT 60.905 57.895 0.00 0.00 44.79 3.74
2394 4182 2.282745 GTTGCAAGGCAGGGAGCT 60.283 61.111 0.00 0.00 44.79 4.09
2395 4183 3.376918 GGTTGCAAGGCAGGGAGC 61.377 66.667 0.00 0.00 40.61 4.70
2396 4184 3.058160 CGGTTGCAAGGCAGGGAG 61.058 66.667 0.00 0.00 40.61 4.30
2407 4195 1.002468 CCTATTGCTGTATGCGGTTGC 60.002 52.381 0.00 0.00 46.63 4.17
2408 4196 2.288666 ACCTATTGCTGTATGCGGTTG 58.711 47.619 0.00 0.00 46.63 3.77
2409 4197 2.710096 ACCTATTGCTGTATGCGGTT 57.290 45.000 0.00 0.00 46.63 4.44
2410 4198 2.224209 GGTACCTATTGCTGTATGCGGT 60.224 50.000 4.06 0.00 46.63 5.68
2411 4199 2.037251 AGGTACCTATTGCTGTATGCGG 59.963 50.000 14.41 0.00 46.63 5.69
2412 4200 3.059884 CAGGTACCTATTGCTGTATGCG 58.940 50.000 15.80 0.00 46.63 4.73
2413 4201 2.808543 GCAGGTACCTATTGCTGTATGC 59.191 50.000 15.80 6.90 43.25 3.14
2414 4202 4.060900 CTGCAGGTACCTATTGCTGTATG 58.939 47.826 21.36 6.20 38.60 2.39
2415 4203 3.495100 GCTGCAGGTACCTATTGCTGTAT 60.495 47.826 23.49 0.00 38.52 2.29
2416 4204 2.158957 GCTGCAGGTACCTATTGCTGTA 60.159 50.000 23.49 9.38 38.52 2.74
2417 4205 1.407437 GCTGCAGGTACCTATTGCTGT 60.407 52.381 23.49 0.00 38.52 4.40
2418 4206 1.134280 AGCTGCAGGTACCTATTGCTG 60.134 52.381 24.68 22.63 38.60 4.41
2419 4207 1.207791 AGCTGCAGGTACCTATTGCT 58.792 50.000 18.63 21.52 38.60 3.91
2420 4208 1.672881 CAAGCTGCAGGTACCTATTGC 59.327 52.381 20.51 15.82 38.30 3.56
2421 4209 2.939103 GTCAAGCTGCAGGTACCTATTG 59.061 50.000 20.51 12.64 0.00 1.90
2422 4210 2.571653 TGTCAAGCTGCAGGTACCTATT 59.428 45.455 20.51 0.00 0.00 1.73
2423 4211 2.187958 TGTCAAGCTGCAGGTACCTAT 58.812 47.619 20.51 0.00 0.00 2.57
2424 4212 1.639722 TGTCAAGCTGCAGGTACCTA 58.360 50.000 20.51 0.00 0.00 3.08
2425 4213 0.987294 ATGTCAAGCTGCAGGTACCT 59.013 50.000 20.51 9.21 0.00 3.08
2426 4214 1.826385 AATGTCAAGCTGCAGGTACC 58.174 50.000 20.51 2.73 0.00 3.34
2427 4215 3.334691 TGTAATGTCAAGCTGCAGGTAC 58.665 45.455 20.51 15.16 0.00 3.34
2428 4216 3.694043 TGTAATGTCAAGCTGCAGGTA 57.306 42.857 20.51 3.28 0.00 3.08
2429 4217 2.566833 TGTAATGTCAAGCTGCAGGT 57.433 45.000 13.85 13.85 0.00 4.00
2430 4218 3.004629 TGTTTGTAATGTCAAGCTGCAGG 59.995 43.478 17.12 0.00 31.55 4.85
2431 4219 4.227512 TGTTTGTAATGTCAAGCTGCAG 57.772 40.909 10.11 10.11 31.55 4.41
2432 4220 4.277921 TCATGTTTGTAATGTCAAGCTGCA 59.722 37.500 1.02 0.00 31.55 4.41
2433 4221 4.797471 TCATGTTTGTAATGTCAAGCTGC 58.203 39.130 0.00 0.00 31.55 5.25
2434 4222 6.207928 TGTTCATGTTTGTAATGTCAAGCTG 58.792 36.000 0.00 0.00 31.55 4.24
2435 4223 6.389830 TGTTCATGTTTGTAATGTCAAGCT 57.610 33.333 0.00 0.00 31.55 3.74
2436 4224 6.308766 GGATGTTCATGTTTGTAATGTCAAGC 59.691 38.462 0.00 0.00 0.00 4.01
2437 4225 7.369607 TGGATGTTCATGTTTGTAATGTCAAG 58.630 34.615 0.00 0.00 0.00 3.02
2438 4226 7.282332 TGGATGTTCATGTTTGTAATGTCAA 57.718 32.000 0.00 0.00 0.00 3.18
2439 4227 6.890979 TGGATGTTCATGTTTGTAATGTCA 57.109 33.333 0.00 0.00 0.00 3.58
2440 4228 7.144661 TGTTGGATGTTCATGTTTGTAATGTC 58.855 34.615 0.00 0.00 0.00 3.06
2441 4229 7.048629 TGTTGGATGTTCATGTTTGTAATGT 57.951 32.000 0.00 0.00 0.00 2.71
2442 4230 7.147312 ACTGTTGGATGTTCATGTTTGTAATG 58.853 34.615 0.00 0.00 0.00 1.90
2443 4231 7.288810 ACTGTTGGATGTTCATGTTTGTAAT 57.711 32.000 0.00 0.00 0.00 1.89
2444 4232 6.707440 ACTGTTGGATGTTCATGTTTGTAA 57.293 33.333 0.00 0.00 0.00 2.41
2450 4238 4.279169 CCTGAAACTGTTGGATGTTCATGT 59.721 41.667 0.00 0.00 0.00 3.21
2481 4269 4.313020 AGGAGCTCTTTGATTTGGTGAT 57.687 40.909 14.64 0.00 0.00 3.06
2508 4296 5.238650 GCAAGTTTTTCTCCTTACAGTAGCA 59.761 40.000 0.00 0.00 0.00 3.49
2509 4297 5.238650 TGCAAGTTTTTCTCCTTACAGTAGC 59.761 40.000 0.00 0.00 0.00 3.58
2515 4303 9.476202 AATATTGTTGCAAGTTTTTCTCCTTAC 57.524 29.630 0.00 0.00 0.00 2.34
2531 4319 8.034804 AGAAGGTGGTTTCATAAATATTGTTGC 58.965 33.333 0.00 0.00 0.00 4.17
2599 4387 6.694447 GGGGGAGAAAGGTTGTTTAATAAAC 58.306 40.000 8.82 8.82 41.73 2.01
2668 7488 9.051027 CGTTTAACACAAGATGATACATGAAAC 57.949 33.333 0.00 0.00 0.00 2.78
2681 7501 7.009723 GCAAAGGAAAATTCGTTTAACACAAGA 59.990 33.333 12.01 0.00 41.64 3.02
2723 7543 1.873591 AGCGACACAATCACCTTGTTC 59.126 47.619 0.00 0.00 45.98 3.18
2724 7544 1.967319 AGCGACACAATCACCTTGTT 58.033 45.000 0.00 0.00 45.98 2.83
2726 7546 2.688507 AGTAGCGACACAATCACCTTG 58.311 47.619 0.00 0.00 40.90 3.61
2727 7547 3.368116 GGTAGTAGCGACACAATCACCTT 60.368 47.826 0.00 0.00 0.00 3.50
2728 7548 2.165845 GGTAGTAGCGACACAATCACCT 59.834 50.000 0.00 0.00 0.00 4.00
2729 7549 2.094390 TGGTAGTAGCGACACAATCACC 60.094 50.000 0.00 0.00 0.00 4.02
2730 7550 3.226346 TGGTAGTAGCGACACAATCAC 57.774 47.619 0.00 0.00 0.00 3.06
2731 7551 3.945981 TTGGTAGTAGCGACACAATCA 57.054 42.857 0.00 0.00 0.00 2.57
2732 7552 5.560148 CATTTTGGTAGTAGCGACACAATC 58.440 41.667 0.00 0.00 0.00 2.67
2733 7553 4.142687 GCATTTTGGTAGTAGCGACACAAT 60.143 41.667 0.00 0.00 0.00 2.71
2734 7554 3.187637 GCATTTTGGTAGTAGCGACACAA 59.812 43.478 0.00 0.00 0.00 3.33
2735 7555 2.739913 GCATTTTGGTAGTAGCGACACA 59.260 45.455 0.00 0.00 0.00 3.72
2736 7556 3.385079 GCATTTTGGTAGTAGCGACAC 57.615 47.619 0.00 0.00 0.00 3.67
2740 7560 2.032894 CCATCGCATTTTGGTAGTAGCG 60.033 50.000 0.00 0.00 45.79 4.26
2741 7561 2.290641 CCCATCGCATTTTGGTAGTAGC 59.709 50.000 0.00 0.00 0.00 3.58
2742 7562 2.878406 CCCCATCGCATTTTGGTAGTAG 59.122 50.000 0.00 0.00 0.00 2.57
2743 7563 2.925724 CCCCATCGCATTTTGGTAGTA 58.074 47.619 0.00 0.00 0.00 1.82
2744 7564 1.762708 CCCCATCGCATTTTGGTAGT 58.237 50.000 0.00 0.00 0.00 2.73
2745 7565 0.385390 GCCCCATCGCATTTTGGTAG 59.615 55.000 0.00 0.00 0.00 3.18
2746 7566 0.033601 AGCCCCATCGCATTTTGGTA 60.034 50.000 0.00 0.00 0.00 3.25
2747 7567 1.305213 AGCCCCATCGCATTTTGGT 60.305 52.632 0.00 0.00 0.00 3.67
2748 7568 1.142314 CAGCCCCATCGCATTTTGG 59.858 57.895 0.00 0.00 0.00 3.28
2749 7569 0.458889 CACAGCCCCATCGCATTTTG 60.459 55.000 0.00 0.00 0.00 2.44
2750 7570 1.606885 CCACAGCCCCATCGCATTTT 61.607 55.000 0.00 0.00 0.00 1.82
2751 7571 2.053865 CCACAGCCCCATCGCATTT 61.054 57.895 0.00 0.00 0.00 2.32
2752 7572 2.288642 ATCCACAGCCCCATCGCATT 62.289 55.000 0.00 0.00 0.00 3.56
2753 7573 1.418097 TATCCACAGCCCCATCGCAT 61.418 55.000 0.00 0.00 0.00 4.73
2754 7574 1.418097 ATATCCACAGCCCCATCGCA 61.418 55.000 0.00 0.00 0.00 5.10
2755 7575 0.613260 TATATCCACAGCCCCATCGC 59.387 55.000 0.00 0.00 0.00 4.58
2756 7576 1.404181 CGTATATCCACAGCCCCATCG 60.404 57.143 0.00 0.00 0.00 3.84
2757 7577 1.623811 ACGTATATCCACAGCCCCATC 59.376 52.381 0.00 0.00 0.00 3.51
2758 7578 1.347707 CACGTATATCCACAGCCCCAT 59.652 52.381 0.00 0.00 0.00 4.00
2759 7579 0.756294 CACGTATATCCACAGCCCCA 59.244 55.000 0.00 0.00 0.00 4.96
2760 7580 1.045407 TCACGTATATCCACAGCCCC 58.955 55.000 0.00 0.00 0.00 5.80
2761 7581 1.687123 AGTCACGTATATCCACAGCCC 59.313 52.381 0.00 0.00 0.00 5.19
2762 7582 3.305199 GGTAGTCACGTATATCCACAGCC 60.305 52.174 0.00 0.00 0.00 4.85
2763 7583 3.568853 AGGTAGTCACGTATATCCACAGC 59.431 47.826 0.00 0.00 0.00 4.40
2764 7584 5.531659 AGAAGGTAGTCACGTATATCCACAG 59.468 44.000 0.00 0.00 0.00 3.66
2765 7585 5.298527 CAGAAGGTAGTCACGTATATCCACA 59.701 44.000 0.00 0.00 0.00 4.17
2766 7586 5.278364 CCAGAAGGTAGTCACGTATATCCAC 60.278 48.000 0.00 0.00 0.00 4.02
2767 7587 4.825634 CCAGAAGGTAGTCACGTATATCCA 59.174 45.833 0.00 0.00 0.00 3.41
2768 7588 5.373981 CCAGAAGGTAGTCACGTATATCC 57.626 47.826 0.00 0.00 0.00 2.59
2781 7601 4.514454 GCACAAGGCTCACCAGAAGGTA 62.514 54.545 0.00 0.00 43.05 3.08
2782 7602 3.869532 GCACAAGGCTCACCAGAAGGT 62.870 57.143 0.00 0.00 44.87 3.50
2783 7603 1.239968 GCACAAGGCTCACCAGAAGG 61.240 60.000 0.00 0.00 40.25 3.46
2784 7604 0.535780 TGCACAAGGCTCACCAGAAG 60.536 55.000 0.00 0.00 45.15 2.85
2785 7605 0.111061 ATGCACAAGGCTCACCAGAA 59.889 50.000 0.00 0.00 45.15 3.02
2786 7606 0.607217 CATGCACAAGGCTCACCAGA 60.607 55.000 0.00 0.00 45.15 3.86
2787 7607 1.592400 CCATGCACAAGGCTCACCAG 61.592 60.000 0.00 0.00 45.15 4.00
2788 7608 1.604308 CCATGCACAAGGCTCACCA 60.604 57.895 0.00 0.00 45.15 4.17
2789 7609 1.303561 TCCATGCACAAGGCTCACC 60.304 57.895 0.00 0.00 45.15 4.02
2790 7610 1.930908 GCTCCATGCACAAGGCTCAC 61.931 60.000 0.00 0.00 45.15 3.51
2791 7611 1.676635 GCTCCATGCACAAGGCTCA 60.677 57.895 0.00 0.00 45.15 4.26
2792 7612 2.758089 CGCTCCATGCACAAGGCTC 61.758 63.158 0.00 0.00 45.15 4.70
2793 7613 2.749044 CGCTCCATGCACAAGGCT 60.749 61.111 0.00 0.00 45.15 4.58
2794 7614 3.818787 CCGCTCCATGCACAAGGC 61.819 66.667 0.00 0.00 43.06 4.35
2795 7615 2.360350 ACCGCTCCATGCACAAGG 60.360 61.111 0.00 0.00 43.06 3.61
2796 7616 1.236616 TTGACCGCTCCATGCACAAG 61.237 55.000 0.00 0.00 43.06 3.16
2797 7617 1.228094 TTGACCGCTCCATGCACAA 60.228 52.632 0.00 0.00 43.06 3.33
2798 7618 1.672030 CTTGACCGCTCCATGCACA 60.672 57.895 0.00 0.00 43.06 4.57
2799 7619 0.745845 ATCTTGACCGCTCCATGCAC 60.746 55.000 0.00 0.00 43.06 4.57
2800 7620 0.462581 GATCTTGACCGCTCCATGCA 60.463 55.000 0.00 0.00 43.06 3.96
2801 7621 0.179062 AGATCTTGACCGCTCCATGC 60.179 55.000 0.00 0.00 38.57 4.06
2802 7622 2.208431 GAAGATCTTGACCGCTCCATG 58.792 52.381 14.00 0.00 0.00 3.66
2803 7623 1.202463 CGAAGATCTTGACCGCTCCAT 60.202 52.381 14.00 0.00 0.00 3.41
2804 7624 0.173481 CGAAGATCTTGACCGCTCCA 59.827 55.000 14.00 0.00 0.00 3.86
2805 7625 0.456221 TCGAAGATCTTGACCGCTCC 59.544 55.000 14.00 0.00 0.00 4.70
2806 7626 1.402259 TCTCGAAGATCTTGACCGCTC 59.598 52.381 14.00 0.00 33.89 5.03
2807 7627 1.464734 TCTCGAAGATCTTGACCGCT 58.535 50.000 14.00 0.00 33.89 5.52
2808 7628 2.279582 TTCTCGAAGATCTTGACCGC 57.720 50.000 14.00 0.00 33.89 5.68
2809 7629 3.839293 ACTTTCTCGAAGATCTTGACCG 58.161 45.455 14.00 10.66 38.77 4.79
2810 7630 5.347364 CAGAACTTTCTCGAAGATCTTGACC 59.653 44.000 14.00 0.00 42.79 4.02
2811 7631 5.347364 CCAGAACTTTCTCGAAGATCTTGAC 59.653 44.000 14.00 0.00 42.79 3.18
2812 7632 5.473931 CCAGAACTTTCTCGAAGATCTTGA 58.526 41.667 14.00 9.73 42.79 3.02
2813 7633 4.092675 GCCAGAACTTTCTCGAAGATCTTG 59.907 45.833 14.00 5.66 42.79 3.02
2814 7634 4.249661 GCCAGAACTTTCTCGAAGATCTT 58.750 43.478 7.95 7.95 42.79 2.40
2815 7635 3.368948 GGCCAGAACTTTCTCGAAGATCT 60.369 47.826 0.00 0.00 45.28 2.75
2816 7636 2.933260 GGCCAGAACTTTCTCGAAGATC 59.067 50.000 0.00 0.00 38.77 2.75
2817 7637 2.303022 TGGCCAGAACTTTCTCGAAGAT 59.697 45.455 0.00 0.00 38.77 2.40
2818 7638 1.691976 TGGCCAGAACTTTCTCGAAGA 59.308 47.619 0.00 0.00 38.77 2.87
2819 7639 2.169832 TGGCCAGAACTTTCTCGAAG 57.830 50.000 0.00 0.00 41.32 3.79
2820 7640 2.038426 TCATGGCCAGAACTTTCTCGAA 59.962 45.455 13.05 0.00 34.74 3.71
2821 7641 1.623311 TCATGGCCAGAACTTTCTCGA 59.377 47.619 13.05 0.00 34.74 4.04
2822 7642 2.005451 CTCATGGCCAGAACTTTCTCG 58.995 52.381 13.05 0.00 34.74 4.04
2823 7643 2.290577 ACCTCATGGCCAGAACTTTCTC 60.291 50.000 13.05 0.00 33.88 2.87
2824 7644 1.707427 ACCTCATGGCCAGAACTTTCT 59.293 47.619 13.05 0.00 35.66 2.52
2825 7645 2.206576 ACCTCATGGCCAGAACTTTC 57.793 50.000 13.05 0.00 36.63 2.62
2826 7646 2.242043 CAACCTCATGGCCAGAACTTT 58.758 47.619 13.05 0.00 36.63 2.66
2827 7647 1.548582 CCAACCTCATGGCCAGAACTT 60.549 52.381 13.05 0.00 36.63 2.66
2828 7648 0.038744 CCAACCTCATGGCCAGAACT 59.961 55.000 13.05 0.00 36.63 3.01
2829 7649 2.571548 CCAACCTCATGGCCAGAAC 58.428 57.895 13.05 0.00 36.63 3.01
2840 7660 3.887335 TAACACCGCGGCCAACCTC 62.887 63.158 28.58 0.00 0.00 3.85
2841 7661 3.943691 TAACACCGCGGCCAACCT 61.944 61.111 28.58 0.00 0.00 3.50
2842 7662 3.729698 GTAACACCGCGGCCAACC 61.730 66.667 28.58 7.05 0.00 3.77
2843 7663 3.729698 GGTAACACCGCGGCCAAC 61.730 66.667 28.58 18.09 0.00 3.77
2860 7680 4.043168 GGTGCCCGACCATATTCG 57.957 61.111 0.00 0.00 45.34 3.34
2867 7687 4.394712 CTCTGGTGGTGCCCGACC 62.395 72.222 0.00 0.00 46.37 4.79
2868 7688 3.626924 ACTCTGGTGGTGCCCGAC 61.627 66.667 0.00 0.00 36.04 4.79
2869 7689 3.625897 CACTCTGGTGGTGCCCGA 61.626 66.667 0.00 0.00 39.59 5.14
2876 7696 0.954452 GGACAAAAGCACTCTGGTGG 59.046 55.000 0.00 0.00 43.18 4.61
2877 7697 0.588252 CGGACAAAAGCACTCTGGTG 59.412 55.000 0.00 0.00 45.53 4.17
2878 7698 0.468226 TCGGACAAAAGCACTCTGGT 59.532 50.000 0.00 0.00 0.00 4.00
2879 7699 1.151668 CTCGGACAAAAGCACTCTGG 58.848 55.000 0.00 0.00 0.00 3.86
2880 7700 1.151668 CCTCGGACAAAAGCACTCTG 58.848 55.000 0.00 0.00 0.00 3.35
2881 7701 0.603975 GCCTCGGACAAAAGCACTCT 60.604 55.000 0.00 0.00 0.00 3.24
2882 7702 1.578206 GGCCTCGGACAAAAGCACTC 61.578 60.000 0.00 0.00 0.00 3.51
2883 7703 1.600916 GGCCTCGGACAAAAGCACT 60.601 57.895 0.00 0.00 0.00 4.40
2884 7704 1.244019 ATGGCCTCGGACAAAAGCAC 61.244 55.000 3.32 0.00 36.35 4.40
2885 7705 0.539438 AATGGCCTCGGACAAAAGCA 60.539 50.000 3.32 0.00 36.35 3.91
2886 7706 0.171231 GAATGGCCTCGGACAAAAGC 59.829 55.000 3.32 0.00 36.35 3.51
2887 7707 0.811281 GGAATGGCCTCGGACAAAAG 59.189 55.000 3.32 0.00 36.35 2.27
2888 7708 0.404040 AGGAATGGCCTCGGACAAAA 59.596 50.000 3.32 0.00 46.97 2.44
2889 7709 2.074967 AGGAATGGCCTCGGACAAA 58.925 52.632 3.32 0.00 46.97 2.83
2890 7710 3.820425 AGGAATGGCCTCGGACAA 58.180 55.556 3.32 0.00 46.97 3.18
2896 7716 9.302474 TGAAATTATCATGCAAGGAATGGCCTC 62.302 40.741 3.32 0.00 38.66 4.70
2897 7717 7.597948 TGAAATTATCATGCAAGGAATGGCCT 61.598 38.462 3.32 0.00 40.51 5.19
2898 7718 4.612264 AATTATCATGCAAGGAATGGCC 57.388 40.909 0.00 0.00 0.00 5.36
2899 7719 5.603596 TGAAATTATCATGCAAGGAATGGC 58.396 37.500 0.00 0.00 31.50 4.40
2927 7747 4.347453 CTTGCCGTGGCTTGCACC 62.347 66.667 12.84 0.00 42.51 5.01
2928 7748 4.347453 CCTTGCCGTGGCTTGCAC 62.347 66.667 12.84 0.00 42.51 4.57
2935 7755 2.746277 GTAGGTGCCTTGCCGTGG 60.746 66.667 0.00 0.00 0.00 4.94
2936 7756 1.377202 ATGTAGGTGCCTTGCCGTG 60.377 57.895 0.00 0.00 0.00 4.94
2937 7757 1.377202 CATGTAGGTGCCTTGCCGT 60.377 57.895 0.00 0.00 0.00 5.68
2938 7758 2.764314 GCATGTAGGTGCCTTGCCG 61.764 63.158 0.00 0.00 39.18 5.69
2939 7759 2.764314 CGCATGTAGGTGCCTTGCC 61.764 63.158 7.55 0.00 42.06 4.52
2940 7760 2.793946 CGCATGTAGGTGCCTTGC 59.206 61.111 0.00 0.00 42.06 4.01
2941 7761 1.709147 GAGCGCATGTAGGTGCCTTG 61.709 60.000 11.47 0.00 45.18 3.61
2942 7762 1.450312 GAGCGCATGTAGGTGCCTT 60.450 57.895 11.47 0.00 45.18 4.35
2943 7763 2.184020 TTGAGCGCATGTAGGTGCCT 62.184 55.000 11.47 0.00 45.18 4.75
2944 7764 1.709147 CTTGAGCGCATGTAGGTGCC 61.709 60.000 11.47 0.00 45.18 5.01
2945 7765 1.709147 CCTTGAGCGCATGTAGGTGC 61.709 60.000 11.47 0.00 44.42 5.01
2946 7766 0.391661 ACCTTGAGCGCATGTAGGTG 60.392 55.000 18.64 0.00 37.80 4.00
2947 7767 0.391661 CACCTTGAGCGCATGTAGGT 60.392 55.000 11.47 13.79 39.74 3.08
2948 7768 1.709147 GCACCTTGAGCGCATGTAGG 61.709 60.000 11.47 13.09 0.00 3.18
2949 7769 1.709147 GGCACCTTGAGCGCATGTAG 61.709 60.000 11.47 0.52 0.00 2.74
2950 7770 1.745115 GGCACCTTGAGCGCATGTA 60.745 57.895 11.47 0.00 0.00 2.29
2951 7771 3.058160 GGCACCTTGAGCGCATGT 61.058 61.111 11.47 0.00 0.00 3.21
2952 7772 2.628696 TTGGCACCTTGAGCGCATG 61.629 57.895 11.47 0.00 0.00 4.06
2953 7773 2.282391 TTGGCACCTTGAGCGCAT 60.282 55.556 11.47 0.00 0.00 4.73
2954 7774 3.286751 GTTGGCACCTTGAGCGCA 61.287 61.111 11.47 0.00 0.00 6.09
2955 7775 2.146073 ATTGTTGGCACCTTGAGCGC 62.146 55.000 0.00 0.00 0.00 5.92
2956 7776 0.314935 AATTGTTGGCACCTTGAGCG 59.685 50.000 0.00 0.00 0.00 5.03
2957 7777 3.514645 CATAATTGTTGGCACCTTGAGC 58.485 45.455 0.00 0.00 0.00 4.26
2958 7778 3.194116 AGCATAATTGTTGGCACCTTGAG 59.806 43.478 0.00 0.00 0.00 3.02
2959 7779 3.164268 AGCATAATTGTTGGCACCTTGA 58.836 40.909 0.00 0.00 0.00 3.02
2960 7780 3.598019 AGCATAATTGTTGGCACCTTG 57.402 42.857 0.00 0.00 0.00 3.61
2961 7781 5.736951 TTAAGCATAATTGTTGGCACCTT 57.263 34.783 0.00 0.00 0.00 3.50
2962 7782 5.245977 AGTTTAAGCATAATTGTTGGCACCT 59.754 36.000 0.00 0.00 0.00 4.00
2963 7783 5.478407 AGTTTAAGCATAATTGTTGGCACC 58.522 37.500 0.00 0.00 0.00 5.01
2964 7784 6.644592 TCAAGTTTAAGCATAATTGTTGGCAC 59.355 34.615 0.00 0.00 0.00 5.01
2965 7785 6.644592 GTCAAGTTTAAGCATAATTGTTGGCA 59.355 34.615 0.00 0.00 0.00 4.92
2966 7786 6.644592 TGTCAAGTTTAAGCATAATTGTTGGC 59.355 34.615 0.00 0.00 0.00 4.52
2967 7787 8.761575 ATGTCAAGTTTAAGCATAATTGTTGG 57.238 30.769 0.00 0.00 0.00 3.77
2976 7796 9.113838 CACCTTAGATATGTCAAGTTTAAGCAT 57.886 33.333 0.00 0.00 0.00 3.79
2977 7797 8.100791 ACACCTTAGATATGTCAAGTTTAAGCA 58.899 33.333 0.00 0.00 0.00 3.91
2978 7798 8.494016 ACACCTTAGATATGTCAAGTTTAAGC 57.506 34.615 0.00 0.00 0.00 3.09
2982 7802 8.784043 GTCAAACACCTTAGATATGTCAAGTTT 58.216 33.333 0.00 0.00 0.00 2.66
2983 7803 8.157476 AGTCAAACACCTTAGATATGTCAAGTT 58.843 33.333 0.00 0.00 0.00 2.66
2984 7804 7.680730 AGTCAAACACCTTAGATATGTCAAGT 58.319 34.615 0.00 0.00 0.00 3.16
2985 7805 7.278868 GGAGTCAAACACCTTAGATATGTCAAG 59.721 40.741 0.00 0.00 0.00 3.02
2986 7806 7.103641 GGAGTCAAACACCTTAGATATGTCAA 58.896 38.462 0.00 0.00 0.00 3.18
2987 7807 6.212589 TGGAGTCAAACACCTTAGATATGTCA 59.787 38.462 0.00 0.00 29.70 3.58
2988 7808 6.640518 TGGAGTCAAACACCTTAGATATGTC 58.359 40.000 0.00 0.00 29.70 3.06
2989 7809 6.620877 TGGAGTCAAACACCTTAGATATGT 57.379 37.500 0.00 0.00 29.70 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.