Multiple sequence alignment - TraesCS5A01G287400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G287400 chr5A 100.000 4998 0 0 1 4998 495318376 495323373 0.000000e+00 9230.0
1 TraesCS5A01G287400 chr5A 97.414 116 2 1 2467 2582 375844365 375844479 3.950000e-46 196.0
2 TraesCS5A01G287400 chr5D 95.925 1595 52 9 897 2486 393455362 393456948 0.000000e+00 2573.0
3 TraesCS5A01G287400 chr5D 93.642 1038 63 3 2547 3582 393457066 393458102 0.000000e+00 1548.0
4 TraesCS5A01G287400 chr5D 90.742 1091 54 24 3588 4667 393458164 393459218 0.000000e+00 1411.0
5 TraesCS5A01G287400 chr5D 89.110 753 35 18 107 824 393454489 393455229 0.000000e+00 893.0
6 TraesCS5A01G287400 chr5D 77.581 339 30 21 4664 4998 393459342 393459638 4.000000e-36 163.0
7 TraesCS5A01G287400 chr5D 96.296 54 2 0 4573 4626 393459068 393459121 6.890000e-14 89.8
8 TraesCS5A01G287400 chr5B 96.120 1572 51 7 919 2486 473175198 473176763 0.000000e+00 2556.0
9 TraesCS5A01G287400 chr5B 93.182 1056 62 7 2548 3594 473176882 473177936 0.000000e+00 1543.0
10 TraesCS5A01G287400 chr5B 92.809 1043 33 20 3588 4620 473177978 473178988 0.000000e+00 1472.0
11 TraesCS5A01G287400 chr5B 88.212 755 38 15 107 824 473174256 473174996 0.000000e+00 854.0
12 TraesCS5A01G287400 chr5B 94.667 75 2 2 897 970 473175129 473175202 1.140000e-21 115.0
13 TraesCS5A01G287400 chr1D 83.156 1318 141 55 748 2023 404062846 404061568 0.000000e+00 1129.0
14 TraesCS5A01G287400 chr1D 80.342 936 139 32 2573 3496 404061018 404060116 0.000000e+00 667.0
15 TraesCS5A01G287400 chr1D 77.938 417 68 18 2056 2464 404061422 404061022 6.470000e-59 239.0
16 TraesCS5A01G287400 chr1D 81.188 303 31 11 3730 4010 404059841 404059543 2.340000e-53 220.0
17 TraesCS5A01G287400 chr1D 83.333 156 9 5 154 293 404063223 404063069 1.460000e-25 128.0
18 TraesCS5A01G287400 chr1A 83.019 1325 145 56 748 2023 499635465 499634172 0.000000e+00 1127.0
19 TraesCS5A01G287400 chr1A 80.277 938 142 31 2573 3496 499633650 499632742 0.000000e+00 667.0
20 TraesCS5A01G287400 chr1A 79.572 421 58 14 2056 2464 499634058 499633654 4.930000e-70 276.0
21 TraesCS5A01G287400 chr1A 76.681 476 57 29 3733 4167 499632467 499632005 1.090000e-51 215.0
22 TraesCS5A01G287400 chr1B 80.835 934 139 29 2575 3496 543475515 543474610 0.000000e+00 697.0
23 TraesCS5A01G287400 chr1B 87.189 562 57 13 1472 2023 543476580 543476024 4.250000e-175 625.0
24 TraesCS5A01G287400 chr1B 81.728 602 71 22 863 1428 543477188 543476590 2.720000e-127 466.0
25 TraesCS5A01G287400 chr1B 77.349 415 67 17 2056 2466 543475910 543475519 2.340000e-53 220.0
26 TraesCS5A01G287400 chr1B 96.429 112 4 0 3730 3841 543474337 543474226 8.540000e-43 185.0
27 TraesCS5A01G287400 chr1B 75.597 377 41 27 3875 4223 543474168 543473815 6.750000e-29 139.0
28 TraesCS5A01G287400 chr3B 92.180 422 28 3 1604 2023 758332956 758333374 4.310000e-165 592.0
29 TraesCS5A01G287400 chr3B 81.087 460 47 14 2019 2469 758333459 758333887 1.040000e-86 331.0
30 TraesCS5A01G287400 chr6A 90.974 421 26 6 1606 2023 580184995 580185406 1.570000e-154 556.0
31 TraesCS5A01G287400 chr6A 90.714 420 28 5 1606 2023 333828397 333828807 2.630000e-152 549.0
32 TraesCS5A01G287400 chr6A 89.308 318 31 3 2573 2889 580185866 580186181 3.630000e-106 396.0
33 TraesCS5A01G287400 chr6A 87.892 223 20 4 2019 2238 333828879 333829097 6.420000e-64 255.0
34 TraesCS5A01G287400 chr6A 87.500 224 20 4 2019 2238 580185491 580185710 8.310000e-63 252.0
35 TraesCS5A01G287400 chr6A 97.391 115 3 0 2460 2574 475435170 475435056 3.950000e-46 196.0
36 TraesCS5A01G287400 chr7A 87.829 304 35 2 2573 2876 684490671 684490370 6.150000e-94 355.0
37 TraesCS5A01G287400 chr7A 92.157 255 15 3 1772 2023 684491383 684491131 6.150000e-94 355.0
38 TraesCS5A01G287400 chr7A 95.349 86 4 0 1606 1691 684509096 684509011 2.430000e-28 137.0
39 TraesCS5A01G287400 chr3A 98.246 114 1 1 2465 2578 684705856 684705744 1.100000e-46 198.0
40 TraesCS5A01G287400 chr2A 97.436 117 1 2 2468 2584 2648708 2648822 1.100000e-46 198.0
41 TraesCS5A01G287400 chrUn 98.230 113 1 1 2466 2578 352766985 352766874 3.950000e-46 196.0
42 TraesCS5A01G287400 chr4A 96.639 119 2 2 2460 2578 537434302 537434418 3.950000e-46 196.0
43 TraesCS5A01G287400 chr4B 98.198 111 2 0 2467 2577 54038039 54037929 1.420000e-45 195.0
44 TraesCS5A01G287400 chr7D 96.552 116 4 0 2459 2574 613703670 613703785 5.110000e-45 193.0
45 TraesCS5A01G287400 chr3D 93.023 129 7 1 2449 2575 103633160 103633288 2.380000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G287400 chr5A 495318376 495323373 4997 False 9230.000000 9230 100.000000 1 4998 1 chr5A.!!$F2 4997
1 TraesCS5A01G287400 chr5D 393454489 393459638 5149 False 1112.966667 2573 90.549333 107 4998 6 chr5D.!!$F1 4891
2 TraesCS5A01G287400 chr5B 473174256 473178988 4732 False 1308.000000 2556 92.998000 107 4620 5 chr5B.!!$F1 4513
3 TraesCS5A01G287400 chr1D 404059543 404063223 3680 True 476.600000 1129 81.191400 154 4010 5 chr1D.!!$R1 3856
4 TraesCS5A01G287400 chr1A 499632005 499635465 3460 True 571.250000 1127 79.887250 748 4167 4 chr1A.!!$R1 3419
5 TraesCS5A01G287400 chr1B 543473815 543477188 3373 True 388.666667 697 83.187833 863 4223 6 chr1B.!!$R1 3360
6 TraesCS5A01G287400 chr3B 758332956 758333887 931 False 461.500000 592 86.633500 1604 2469 2 chr3B.!!$F1 865
7 TraesCS5A01G287400 chr6A 333828397 333829097 700 False 402.000000 549 89.303000 1606 2238 2 chr6A.!!$F1 632
8 TraesCS5A01G287400 chr6A 580184995 580186181 1186 False 401.333333 556 89.260667 1606 2889 3 chr6A.!!$F2 1283
9 TraesCS5A01G287400 chr7A 684490370 684491383 1013 True 355.000000 355 89.993000 1772 2876 2 chr7A.!!$R2 1104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.252696 TGCCTTGCCTCTTCCCTAGA 60.253 55.000 0.0 0.0 0.00 2.43 F
105 106 0.325671 TCCCTAGAGTCAAGCCCAGG 60.326 60.000 0.0 0.0 0.00 4.45 F
622 677 0.721718 CGTTCGACTGAATCCCTTGC 59.278 55.000 0.0 0.0 36.29 4.01 F
628 688 1.000896 CTGAATCCCTTGCCCGGTT 60.001 57.895 0.0 0.0 0.00 4.44 F
2495 2899 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1831 0.105039 GCCTACCGTCTGCTGCTAAT 59.895 55.0 0.00 0.0 0.00 1.73 R
1890 2149 0.407139 AGCCAAAAGGCCTGAGACAT 59.593 50.0 5.69 0.0 35.12 3.06 R
2558 3020 0.822164 AACATACTCCCTCCGTTCCG 59.178 55.0 0.00 0.0 0.00 4.30 R
2584 3046 1.424638 AGCTGTGTTCTGGTAGTGGT 58.575 50.0 0.00 0.0 0.00 4.16 R
4250 4881 0.373716 GTAATGGCAACGAAGAGGCG 59.626 55.0 0.00 0.0 42.51 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.324035 GCCTGAAGCGCCGATTAG 58.676 61.111 2.29 0.00 0.00 1.73
19 20 2.247437 GCCTGAAGCGCCGATTAGG 61.247 63.158 2.29 7.88 44.97 2.69
20 21 1.441729 CCTGAAGCGCCGATTAGGA 59.558 57.895 2.29 0.00 45.00 2.94
21 22 0.598680 CCTGAAGCGCCGATTAGGAG 60.599 60.000 2.29 0.00 45.00 3.69
22 23 0.385751 CTGAAGCGCCGATTAGGAGA 59.614 55.000 2.29 0.00 43.02 3.71
23 24 0.821517 TGAAGCGCCGATTAGGAGAA 59.178 50.000 2.29 0.00 43.02 2.87
24 25 1.202417 TGAAGCGCCGATTAGGAGAAG 60.202 52.381 2.29 0.00 43.02 2.85
25 26 0.530870 AAGCGCCGATTAGGAGAAGC 60.531 55.000 2.29 0.00 43.02 3.86
26 27 1.068250 GCGCCGATTAGGAGAAGCT 59.932 57.895 0.00 0.00 43.02 3.74
27 28 0.314302 GCGCCGATTAGGAGAAGCTA 59.686 55.000 0.00 0.00 43.02 3.32
28 29 1.667467 GCGCCGATTAGGAGAAGCTAG 60.667 57.143 0.00 0.00 43.02 3.42
29 30 1.667467 CGCCGATTAGGAGAAGCTAGC 60.667 57.143 6.62 6.62 43.02 3.42
30 31 1.616374 GCCGATTAGGAGAAGCTAGCT 59.384 52.381 12.68 12.68 45.00 3.32
31 32 2.036604 GCCGATTAGGAGAAGCTAGCTT 59.963 50.000 29.71 29.71 45.00 3.74
32 33 3.648009 CCGATTAGGAGAAGCTAGCTTG 58.352 50.000 33.91 15.61 45.00 4.01
33 34 3.056304 CGATTAGGAGAAGCTAGCTTGC 58.944 50.000 33.91 23.33 36.26 4.01
34 35 3.243704 CGATTAGGAGAAGCTAGCTTGCT 60.244 47.826 33.91 26.74 46.40 3.91
35 36 3.533606 TTAGGAGAAGCTAGCTTGCTG 57.466 47.619 33.91 0.00 43.24 4.41
36 37 0.540923 AGGAGAAGCTAGCTTGCTGG 59.459 55.000 33.91 3.31 43.24 4.85
37 38 0.463474 GGAGAAGCTAGCTTGCTGGG 60.463 60.000 33.91 0.00 43.24 4.45
38 39 1.077858 AGAAGCTAGCTTGCTGGGC 60.078 57.895 33.91 17.96 43.24 5.36
39 40 2.044551 AAGCTAGCTTGCTGGGCC 60.045 61.111 28.83 0.00 43.24 5.80
40 41 2.549169 GAAGCTAGCTTGCTGGGCCT 62.549 60.000 33.91 7.14 43.24 5.19
41 42 2.827642 GCTAGCTTGCTGGGCCTG 60.828 66.667 13.17 5.32 0.00 4.85
42 43 2.124403 CTAGCTTGCTGGGCCTGG 60.124 66.667 12.70 2.60 0.00 4.45
43 44 4.431131 TAGCTTGCTGGGCCTGGC 62.431 66.667 11.05 11.05 0.00 4.85
53 54 3.451894 GGCCTGGCCCATTTGACG 61.452 66.667 27.77 0.00 44.06 4.35
54 55 4.133796 GCCTGGCCCATTTGACGC 62.134 66.667 7.66 0.00 0.00 5.19
55 56 2.676121 CCTGGCCCATTTGACGCA 60.676 61.111 0.00 0.00 0.00 5.24
56 57 2.274645 CCTGGCCCATTTGACGCAA 61.275 57.895 0.00 0.00 0.00 4.85
58 59 2.216750 CTGGCCCATTTGACGCAAGG 62.217 60.000 0.00 0.00 46.39 3.61
59 60 2.275380 GGCCCATTTGACGCAAGGT 61.275 57.895 0.00 0.00 46.39 3.50
60 61 1.080569 GCCCATTTGACGCAAGGTG 60.081 57.895 0.00 0.00 46.39 4.00
61 62 1.586028 CCCATTTGACGCAAGGTGG 59.414 57.895 13.78 13.78 46.39 4.61
62 63 0.893270 CCCATTTGACGCAAGGTGGA 60.893 55.000 18.46 0.00 46.39 4.02
63 64 0.958091 CCATTTGACGCAAGGTGGAA 59.042 50.000 14.78 0.00 46.39 3.53
64 65 1.335872 CCATTTGACGCAAGGTGGAAC 60.336 52.381 14.78 0.00 46.39 3.62
65 66 1.336440 CATTTGACGCAAGGTGGAACA 59.664 47.619 0.00 0.00 46.39 3.18
66 67 1.021202 TTTGACGCAAGGTGGAACAG 58.979 50.000 0.00 0.00 46.39 3.16
67 68 0.817634 TTGACGCAAGGTGGAACAGG 60.818 55.000 0.00 0.00 46.39 4.00
68 69 2.594592 ACGCAAGGTGGAACAGGC 60.595 61.111 0.00 0.00 46.39 4.85
69 70 2.594303 CGCAAGGTGGAACAGGCA 60.594 61.111 0.00 0.00 41.80 4.75
70 71 2.620112 CGCAAGGTGGAACAGGCAG 61.620 63.158 0.00 0.00 41.80 4.85
71 72 2.270986 GCAAGGTGGAACAGGCAGG 61.271 63.158 0.00 0.00 41.80 4.85
72 73 2.116125 AAGGTGGAACAGGCAGGC 59.884 61.111 0.00 0.00 41.80 4.85
73 74 2.464403 AAGGTGGAACAGGCAGGCT 61.464 57.895 0.00 0.00 41.80 4.58
74 75 2.011617 AAGGTGGAACAGGCAGGCTT 62.012 55.000 0.00 0.00 41.80 4.35
75 76 2.270986 GGTGGAACAGGCAGGCTTG 61.271 63.158 1.49 1.49 41.80 4.01
76 77 2.924105 GTGGAACAGGCAGGCTTGC 61.924 63.158 13.24 13.24 41.80 4.01
87 88 3.282271 GGCTTGCCTTGCCTCTTC 58.718 61.111 4.11 0.00 46.38 2.87
88 89 2.346541 GGCTTGCCTTGCCTCTTCC 61.347 63.158 4.11 0.00 46.38 3.46
89 90 2.346541 GCTTGCCTTGCCTCTTCCC 61.347 63.158 0.00 0.00 0.00 3.97
90 91 1.381851 CTTGCCTTGCCTCTTCCCT 59.618 57.895 0.00 0.00 0.00 4.20
91 92 0.620556 CTTGCCTTGCCTCTTCCCTA 59.379 55.000 0.00 0.00 0.00 3.53
92 93 0.620556 TTGCCTTGCCTCTTCCCTAG 59.379 55.000 0.00 0.00 0.00 3.02
93 94 0.252696 TGCCTTGCCTCTTCCCTAGA 60.253 55.000 0.00 0.00 0.00 2.43
102 103 1.760029 CTCTTCCCTAGAGTCAAGCCC 59.240 57.143 0.00 0.00 44.54 5.19
103 104 1.078823 TCTTCCCTAGAGTCAAGCCCA 59.921 52.381 0.00 0.00 0.00 5.36
104 105 1.484240 CTTCCCTAGAGTCAAGCCCAG 59.516 57.143 0.00 0.00 0.00 4.45
105 106 0.325671 TCCCTAGAGTCAAGCCCAGG 60.326 60.000 0.00 0.00 0.00 4.45
109 110 2.477190 TAGAGTCAAGCCCAGGCCCT 62.477 60.000 4.70 0.00 43.17 5.19
127 128 3.408851 GGTTCGGGTTCGACACGC 61.409 66.667 5.01 5.12 46.20 5.34
293 313 3.476419 CGTTCGGCCCCTACCCAT 61.476 66.667 0.00 0.00 0.00 4.00
294 314 2.135581 CGTTCGGCCCCTACCCATA 61.136 63.158 0.00 0.00 0.00 2.74
295 315 1.448924 GTTCGGCCCCTACCCATAC 59.551 63.158 0.00 0.00 0.00 2.39
296 316 1.767268 TTCGGCCCCTACCCATACC 60.767 63.158 0.00 0.00 0.00 2.73
511 565 3.449632 GACCCTAGTCGATTTCTCTTGC 58.550 50.000 0.00 0.00 32.18 4.01
520 575 2.843912 ATTTCTCTTGCCGGGGCCAG 62.844 60.000 4.39 5.80 41.09 4.85
539 594 6.273071 GGCCAGCTAACCTAAATATTGTTTG 58.727 40.000 0.00 0.00 0.00 2.93
622 677 0.721718 CGTTCGACTGAATCCCTTGC 59.278 55.000 0.00 0.00 36.29 4.01
625 685 1.815421 CGACTGAATCCCTTGCCCG 60.815 63.158 0.00 0.00 0.00 6.13
626 686 1.452108 GACTGAATCCCTTGCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
627 687 2.198304 GACTGAATCCCTTGCCCGGT 62.198 60.000 0.00 0.00 0.00 5.28
628 688 1.000896 CTGAATCCCTTGCCCGGTT 60.001 57.895 0.00 0.00 0.00 4.44
629 689 1.304052 TGAATCCCTTGCCCGGTTG 60.304 57.895 0.00 0.00 0.00 3.77
630 690 2.679996 AATCCCTTGCCCGGTTGC 60.680 61.111 0.00 0.00 0.00 4.17
631 691 4.759205 ATCCCTTGCCCGGTTGCC 62.759 66.667 0.00 0.00 0.00 4.52
683 749 5.105310 TCAGTGAAAACCTGTATCTCTAGCC 60.105 44.000 0.00 0.00 0.00 3.93
684 750 4.777896 AGTGAAAACCTGTATCTCTAGCCA 59.222 41.667 0.00 0.00 0.00 4.75
744 810 3.711190 ACCAAAGCAAATTCCAGGTTTCT 59.289 39.130 0.00 0.00 33.62 2.52
768 846 2.134789 AGGCAGGTAGCTTCATTTGG 57.865 50.000 0.00 0.00 44.79 3.28
801 879 4.164030 ACATGCACCTTCTGATACCATGTA 59.836 41.667 0.00 0.00 39.73 2.29
838 933 5.594725 TGTTTTACAAACCAGGCATCTTACA 59.405 36.000 0.00 0.00 0.00 2.41
839 934 6.096987 TGTTTTACAAACCAGGCATCTTACAA 59.903 34.615 0.00 0.00 0.00 2.41
840 935 6.909550 TTTACAAACCAGGCATCTTACAAT 57.090 33.333 0.00 0.00 0.00 2.71
871 968 4.322198 CCAAAATGCCTTGCAGTACATCTT 60.322 41.667 0.00 0.00 43.65 2.40
880 984 6.238320 GCCTTGCAGTACATCTTTCTGAATAG 60.238 42.308 0.00 0.00 0.00 1.73
884 988 5.814705 GCAGTACATCTTTCTGAATAGTGCT 59.185 40.000 15.47 7.98 40.24 4.40
904 1070 5.514204 GTGCTTGCAATCTTGTTACATGATC 59.486 40.000 12.99 4.22 29.84 2.92
1098 1321 2.746277 GGCAAGGCCGTCGACAAT 60.746 61.111 17.16 0.00 39.62 2.71
1115 1338 4.986034 CGACAATAGCGGGTTTGATATACA 59.014 41.667 8.39 0.00 0.00 2.29
1116 1339 5.107607 CGACAATAGCGGGTTTGATATACAC 60.108 44.000 8.39 0.00 0.00 2.90
1139 1362 2.919602 TCCCTCCACTATTTTCTTGGCT 59.080 45.455 0.00 0.00 0.00 4.75
1259 1486 7.725397 TGATTATTGCTGGATATACTTTTGCCT 59.275 33.333 0.00 0.00 0.00 4.75
1262 1489 5.630415 TGCTGGATATACTTTTGCCTAGT 57.370 39.130 0.00 0.00 0.00 2.57
1329 1573 2.633488 GGTGTGGAGAAGCTGATAACC 58.367 52.381 0.00 0.00 0.00 2.85
1410 1654 5.221422 TGGCTTGGTAATTTGTCTTCCTTTG 60.221 40.000 0.00 0.00 0.00 2.77
1457 1703 6.349300 TCTGAAAGTCCTAAGGTTGATATGC 58.651 40.000 0.00 0.00 33.76 3.14
1462 1708 4.406003 AGTCCTAAGGTTGATATGCGAGTT 59.594 41.667 0.00 0.00 0.00 3.01
1464 1710 6.097839 AGTCCTAAGGTTGATATGCGAGTTAA 59.902 38.462 0.00 0.00 0.00 2.01
1467 1713 6.369065 CCTAAGGTTGATATGCGAGTTAATCC 59.631 42.308 0.00 0.00 0.00 3.01
1468 1714 4.307432 AGGTTGATATGCGAGTTAATCCG 58.693 43.478 0.00 0.00 0.00 4.18
1481 1727 3.871594 AGTTAATCCGTGTATTCTGCAGC 59.128 43.478 9.47 0.00 0.00 5.25
1762 2013 4.212214 CCTGTAAAGGAATTAGCTGATCGC 59.788 45.833 0.00 1.92 39.57 4.58
2047 2432 5.354234 ACAGTGACCAGACAACTTTGTTTAG 59.646 40.000 0.00 0.00 42.43 1.85
2100 2485 5.312895 TGCTTTTAACAGCAGTAGATCCAA 58.687 37.500 12.22 0.00 45.14 3.53
2180 2570 3.722728 AAAGGAAGACAAGCTGCAAAG 57.277 42.857 1.02 0.00 0.00 2.77
2198 2588 7.147143 TGCAAAGACGTAAGCCAATTAATTA 57.853 32.000 0.00 0.00 45.62 1.40
2412 2813 8.896744 TGAATGATCATCCACATTTAGAGTTTC 58.103 33.333 9.06 0.00 36.94 2.78
2482 2886 2.241281 TTCATACTCCCTCCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
2485 2889 3.112263 TCATACTCCCTCCGTTCCAAAT 58.888 45.455 0.00 0.00 0.00 2.32
2488 2892 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2489 2893 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2490 2894 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2494 2898 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2495 2899 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2496 2900 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2497 2901 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2498 2902 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2500 2904 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2501 2905 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2506 2910 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
2507 2911 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
2509 2913 4.433615 ACTCGTCGCAGAAATGAATGTAT 58.566 39.130 0.00 0.00 39.69 2.29
2510 2914 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
2512 2916 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
2515 2919 6.417930 CGTCGCAGAAATGAATGTATCTAGAA 59.582 38.462 0.00 0.00 39.69 2.10
2516 2920 7.559845 GTCGCAGAAATGAATGTATCTAGAAC 58.440 38.462 0.00 0.00 39.69 3.01
2517 2921 7.436673 GTCGCAGAAATGAATGTATCTAGAACT 59.563 37.037 0.00 0.00 39.69 3.01
2518 2922 8.630037 TCGCAGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
2519 2923 9.249457 CGCAGAAATGAATGTATCTAGAACTAA 57.751 33.333 0.00 0.00 0.00 2.24
2552 3014 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2553 3015 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2555 3017 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2558 3020 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2584 3046 6.041296 GGAACGGAGGGAGTATGTTAGATTTA 59.959 42.308 0.00 0.00 0.00 1.40
2629 3091 2.564947 TGGTGTTTTGTTGTTCCTTGCT 59.435 40.909 0.00 0.00 0.00 3.91
2632 3094 3.789224 GTGTTTTGTTGTTCCTTGCTACG 59.211 43.478 0.00 0.00 0.00 3.51
2660 3123 6.701340 TGCTACATATATGAGTTAGGCAAGG 58.299 40.000 19.63 0.00 0.00 3.61
2759 3223 3.793129 GCCATGACGCCAGATACATTTTG 60.793 47.826 0.00 0.00 0.00 2.44
2785 3249 5.815581 AGAAATCTTGCCACACCTGTTATA 58.184 37.500 0.00 0.00 0.00 0.98
2822 3286 1.989430 AAAAGTGGTTGTGTGTTGCG 58.011 45.000 0.00 0.00 0.00 4.85
2842 3306 1.008538 CACACCTGGCGCAAAGTTC 60.009 57.895 10.83 0.00 0.00 3.01
2859 3323 9.403869 CGCAAAGTTCAGTAAAACAAATAAAAC 57.596 29.630 0.00 0.00 0.00 2.43
2887 3351 6.318900 GCATAAAACTAACCTAACATGCCTCT 59.681 38.462 0.00 0.00 33.19 3.69
2922 3386 8.905103 TTTTGATAAATAACCGCTTCTTTAGC 57.095 30.769 0.00 0.00 46.83 3.09
2968 3433 8.974060 TGAGAACTGGTAAGTTAATTCTTTGT 57.026 30.769 0.00 0.00 46.84 2.83
2983 3448 4.755266 TCTTTGTATGGACTAGCTTCCC 57.245 45.455 1.91 0.00 34.33 3.97
2998 3463 0.893270 TTCCCCAATGCAGAACCACG 60.893 55.000 0.00 0.00 0.00 4.94
3000 3465 1.586154 CCCCAATGCAGAACCACGAC 61.586 60.000 0.00 0.00 0.00 4.34
3032 3499 1.065551 GCCATTAATGCCAACGGACTC 59.934 52.381 10.11 0.00 0.00 3.36
3155 3625 8.426881 GTTTTAAATTAGCAAAACTTGGTCCA 57.573 30.769 12.35 0.00 42.20 4.02
3164 3634 6.116126 AGCAAAACTTGGTCCATATCTACTC 58.884 40.000 0.00 0.00 36.50 2.59
3189 3659 6.003859 TCCCCTTGTAACTTTTGTAGTCAA 57.996 37.500 0.00 0.00 35.54 3.18
3278 3748 1.185315 AATGTTGAAGAATGCCCCCG 58.815 50.000 0.00 0.00 0.00 5.73
3317 3787 2.947652 CTGTCAAATGTATCTGCCCAGG 59.052 50.000 0.00 0.00 0.00 4.45
3901 4505 2.749621 CGGCTTTGCTGAATTCCTTACT 59.250 45.455 2.27 0.00 37.02 2.24
3902 4506 3.938963 CGGCTTTGCTGAATTCCTTACTA 59.061 43.478 2.27 0.00 37.02 1.82
3903 4507 4.394920 CGGCTTTGCTGAATTCCTTACTAA 59.605 41.667 2.27 0.00 37.02 2.24
3904 4508 5.066505 CGGCTTTGCTGAATTCCTTACTAAT 59.933 40.000 2.27 0.00 37.02 1.73
4028 4641 1.370051 GTCCCGTTTGCTTTCACGC 60.370 57.895 0.00 0.00 34.98 5.34
4050 4665 4.558898 GCGTGGTGTAATAGAGATACAGGG 60.559 50.000 0.00 0.00 34.14 4.45
4102 4722 3.214696 ACTAGCTCAGGTTGTTGCTTT 57.785 42.857 0.00 0.00 37.02 3.51
4231 4862 9.210329 CTTCTATTGAATCCTGAATGATCTGAG 57.790 37.037 0.00 0.00 0.00 3.35
4250 4881 9.206870 GATCTGAGAATCTGTCTTGATTTATCC 57.793 37.037 0.00 0.00 36.41 2.59
4254 4885 4.696479 ATCTGTCTTGATTTATCCGCCT 57.304 40.909 0.00 0.00 0.00 5.52
4291 4922 1.242076 CAACCTTGAGGCTTGTGGAG 58.758 55.000 7.45 0.00 39.32 3.86
4295 4926 0.535780 CTTGAGGCTTGTGGAGTGCA 60.536 55.000 0.00 0.00 0.00 4.57
4328 4959 5.175859 ACATAGAACATGTGTTTACCCGAG 58.824 41.667 0.00 0.00 38.56 4.63
4334 4965 5.622770 ACATGTGTTTACCCGAGATTTTC 57.377 39.130 0.00 0.00 0.00 2.29
4335 4966 5.067273 ACATGTGTTTACCCGAGATTTTCA 58.933 37.500 0.00 0.00 0.00 2.69
4348 4979 5.182001 CCGAGATTTTCAATTCAACCTGAGT 59.818 40.000 0.00 0.00 0.00 3.41
4406 5037 7.556275 TCCCGTATAAAAGCAAGATTTTGAGAT 59.444 33.333 6.32 0.00 36.36 2.75
4414 5045 5.005740 AGCAAGATTTTGAGATGTACTGCA 58.994 37.500 0.00 0.00 36.36 4.41
4450 5082 3.073946 AGCAGTCTCTCTAGTAGATCCCC 59.926 52.174 0.00 0.00 32.41 4.81
4451 5083 3.073946 GCAGTCTCTCTAGTAGATCCCCT 59.926 52.174 0.00 0.00 32.41 4.79
4455 5087 7.291566 CAGTCTCTCTAGTAGATCCCCTAAAA 58.708 42.308 0.00 0.00 32.41 1.52
4456 5088 7.229907 CAGTCTCTCTAGTAGATCCCCTAAAAC 59.770 44.444 0.00 0.00 32.41 2.43
4457 5089 7.129816 AGTCTCTCTAGTAGATCCCCTAAAACT 59.870 40.741 0.00 0.00 32.41 2.66
4458 5090 7.781219 GTCTCTCTAGTAGATCCCCTAAAACTT 59.219 40.741 0.00 0.00 32.41 2.66
4459 5091 9.011860 TCTCTCTAGTAGATCCCCTAAAACTTA 57.988 37.037 0.00 0.00 32.41 2.24
4460 5092 9.643735 CTCTCTAGTAGATCCCCTAAAACTTAA 57.356 37.037 0.00 0.00 32.41 1.85
4468 5100 8.595362 AGATCCCCTAAAACTTAAATTTGAGG 57.405 34.615 13.89 5.89 39.26 3.86
4469 5101 8.398743 AGATCCCCTAAAACTTAAATTTGAGGA 58.601 33.333 13.48 3.97 41.33 3.71
4470 5102 8.595362 ATCCCCTAAAACTTAAATTTGAGGAG 57.405 34.615 13.48 1.43 41.33 3.69
4471 5103 6.436218 TCCCCTAAAACTTAAATTTGAGGAGC 59.564 38.462 13.48 0.00 41.33 4.70
4472 5104 6.210584 CCCCTAAAACTTAAATTTGAGGAGCA 59.789 38.462 13.48 0.00 41.33 4.26
4473 5105 7.256154 CCCCTAAAACTTAAATTTGAGGAGCAA 60.256 37.037 13.48 0.00 41.33 3.91
4520 5152 4.347607 AGTGATATTTGGGCAAAAGAGCT 58.652 39.130 0.00 0.00 33.56 4.09
4526 5158 7.613801 TGATATTTGGGCAAAAGAGCTAACTAA 59.386 33.333 0.00 0.00 33.56 2.24
4563 5197 3.005791 CCAAAACTTACCCCTTTGCTCTG 59.994 47.826 0.00 0.00 0.00 3.35
4594 5228 0.464554 GAGCCAACTAGCACATCCCC 60.465 60.000 0.00 0.00 34.23 4.81
4625 5259 3.676291 ACTTGACCTCTTTGCTCTCTC 57.324 47.619 0.00 0.00 0.00 3.20
4626 5260 3.238597 ACTTGACCTCTTTGCTCTCTCT 58.761 45.455 0.00 0.00 0.00 3.10
4658 5292 0.676466 TTTGGTATGTGGCTGCTCGG 60.676 55.000 0.00 0.00 0.00 4.63
4673 5434 4.003648 CTGCTCGGTTGACTAAAATTCCT 58.996 43.478 0.00 0.00 0.00 3.36
4712 5475 2.793946 CGCTGCCACCACATTAGC 59.206 61.111 0.00 0.00 0.00 3.09
4715 5478 2.749839 TGCCACCACATTAGCCGC 60.750 61.111 0.00 0.00 0.00 6.53
4716 5479 2.438434 GCCACCACATTAGCCGCT 60.438 61.111 0.00 0.00 0.00 5.52
4717 5480 1.153249 GCCACCACATTAGCCGCTA 60.153 57.895 0.00 0.00 0.00 4.26
4735 5498 1.417890 CTATCGGCTGTCCCCTTTCAT 59.582 52.381 0.00 0.00 0.00 2.57
4741 5504 2.019984 GCTGTCCCCTTTCATGATGAC 58.980 52.381 0.00 0.00 0.00 3.06
4761 5524 1.287815 GGCAAAACGGGTAGGTTGC 59.712 57.895 0.00 0.00 41.44 4.17
4764 5527 0.538746 CAAAACGGGTAGGTTGCCCT 60.539 55.000 0.75 0.00 43.92 5.19
4766 5529 0.251033 AAACGGGTAGGTTGCCCTTC 60.251 55.000 0.75 0.00 43.92 3.46
4782 5545 0.034337 CTTCGTCGGACCCTTGGAAA 59.966 55.000 1.91 0.00 0.00 3.13
4787 5550 1.057851 TCGGACCCTTGGAAACCTGT 61.058 55.000 0.00 0.00 0.00 4.00
4790 5553 1.152546 ACCCTTGGAAACCTGTGCC 60.153 57.895 0.00 0.00 0.00 5.01
4792 5555 0.758685 CCCTTGGAAACCTGTGCCAA 60.759 55.000 0.00 0.00 39.23 4.52
4830 5593 4.354939 CCACAATTTGGCGGCGCA 62.355 61.111 34.36 17.03 39.07 6.09
4831 5594 2.355599 CACAATTTGGCGGCGCAA 60.356 55.556 34.36 22.17 0.00 4.85
4832 5595 2.355718 ACAATTTGGCGGCGCAAC 60.356 55.556 34.36 17.93 0.00 4.17
4833 5596 3.111442 CAATTTGGCGGCGCAACC 61.111 61.111 34.36 17.13 0.00 3.77
4834 5597 3.610669 AATTTGGCGGCGCAACCA 61.611 55.556 34.36 19.80 39.03 3.67
4835 5598 3.857109 AATTTGGCGGCGCAACCAC 62.857 57.895 34.36 16.32 39.03 4.16
4840 5603 3.959975 GCGGCGCAACCACAAGAA 61.960 61.111 29.21 0.00 39.03 2.52
4841 5604 2.252260 CGGCGCAACCACAAGAAG 59.748 61.111 10.83 0.00 39.03 2.85
4842 5605 2.542907 CGGCGCAACCACAAGAAGT 61.543 57.895 10.83 0.00 39.03 3.01
4853 5616 1.148310 ACAAGAAGTGTGATTCGGCG 58.852 50.000 0.00 0.00 39.72 6.46
4854 5617 0.443869 CAAGAAGTGTGATTCGGCGG 59.556 55.000 7.21 0.00 34.27 6.13
4855 5618 1.298859 AAGAAGTGTGATTCGGCGGC 61.299 55.000 7.21 0.00 34.27 6.53
4870 5633 2.594592 GGCGCAACCACCAGAAGT 60.595 61.111 10.83 0.00 38.86 3.01
4876 5639 1.594293 AACCACCAGAAGTGCGACG 60.594 57.895 0.00 0.00 45.83 5.12
4879 5642 2.356313 ACCAGAAGTGCGACGCAG 60.356 61.111 25.21 12.97 40.08 5.18
4896 5659 3.161557 GGCAACTCCTCCACCACT 58.838 61.111 0.00 0.00 0.00 4.00
4928 5691 0.673985 CGGGATGGATTCAGACGCTA 59.326 55.000 0.00 0.00 0.00 4.26
4929 5692 1.603172 CGGGATGGATTCAGACGCTAC 60.603 57.143 0.00 0.00 0.00 3.58
4936 5699 3.244078 TGGATTCAGACGCTACAACTTGT 60.244 43.478 0.00 0.00 0.00 3.16
4941 5704 0.782384 GACGCTACAACTTGTGACGG 59.218 55.000 17.53 3.98 35.33 4.79
4943 5706 1.491563 GCTACAACTTGTGACGGCG 59.508 57.895 4.80 4.80 0.00 6.46
4946 5709 0.102663 TACAACTTGTGACGGCGACA 59.897 50.000 16.62 12.05 0.00 4.35
4947 5710 0.531974 ACAACTTGTGACGGCGACAT 60.532 50.000 16.62 0.00 0.00 3.06
4948 5711 0.110688 CAACTTGTGACGGCGACATG 60.111 55.000 16.62 13.24 0.00 3.21
4949 5712 0.249699 AACTTGTGACGGCGACATGA 60.250 50.000 16.62 5.66 0.00 3.07
4950 5713 0.037326 ACTTGTGACGGCGACATGAT 60.037 50.000 16.62 0.00 0.00 2.45
4951 5714 0.647410 CTTGTGACGGCGACATGATC 59.353 55.000 16.62 1.85 0.00 2.92
4964 5727 2.295629 GACATGATCGAGGAGATGCTCA 59.704 50.000 0.00 0.00 40.26 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.598680 CTCCTAATCGGCGCTTCAGG 60.599 60.000 7.64 7.52 0.00 3.86
3 4 0.385751 TCTCCTAATCGGCGCTTCAG 59.614 55.000 7.64 0.00 0.00 3.02
4 5 0.821517 TTCTCCTAATCGGCGCTTCA 59.178 50.000 7.64 0.00 0.00 3.02
5 6 1.492720 CTTCTCCTAATCGGCGCTTC 58.507 55.000 7.64 0.00 0.00 3.86
6 7 0.530870 GCTTCTCCTAATCGGCGCTT 60.531 55.000 7.64 0.09 0.00 4.68
7 8 1.068250 GCTTCTCCTAATCGGCGCT 59.932 57.895 7.64 0.00 0.00 5.92
8 9 0.314302 TAGCTTCTCCTAATCGGCGC 59.686 55.000 0.00 0.00 0.00 6.53
9 10 1.667467 GCTAGCTTCTCCTAATCGGCG 60.667 57.143 7.70 0.00 0.00 6.46
10 11 1.616374 AGCTAGCTTCTCCTAATCGGC 59.384 52.381 12.68 0.00 0.00 5.54
11 12 3.648009 CAAGCTAGCTTCTCCTAATCGG 58.352 50.000 27.08 8.28 33.42 4.18
12 13 3.056304 GCAAGCTAGCTTCTCCTAATCG 58.944 50.000 27.08 13.41 33.42 3.34
13 14 4.057432 CAGCAAGCTAGCTTCTCCTAATC 58.943 47.826 27.08 8.73 43.70 1.75
14 15 3.181456 CCAGCAAGCTAGCTTCTCCTAAT 60.181 47.826 27.08 0.58 43.70 1.73
15 16 2.169352 CCAGCAAGCTAGCTTCTCCTAA 59.831 50.000 27.08 0.00 43.70 2.69
16 17 1.759445 CCAGCAAGCTAGCTTCTCCTA 59.241 52.381 27.08 0.00 43.70 2.94
17 18 0.540923 CCAGCAAGCTAGCTTCTCCT 59.459 55.000 27.08 19.09 43.70 3.69
18 19 0.463474 CCCAGCAAGCTAGCTTCTCC 60.463 60.000 27.08 17.26 43.70 3.71
19 20 1.094650 GCCCAGCAAGCTAGCTTCTC 61.095 60.000 27.08 20.19 43.70 2.87
20 21 1.077858 GCCCAGCAAGCTAGCTTCT 60.078 57.895 27.08 21.76 43.70 2.85
21 22 2.117779 GGCCCAGCAAGCTAGCTTC 61.118 63.158 27.08 20.03 43.70 3.86
22 23 2.044551 GGCCCAGCAAGCTAGCTT 60.045 61.111 24.42 24.42 43.70 3.74
24 25 2.827642 CAGGCCCAGCAAGCTAGC 60.828 66.667 6.62 6.62 0.00 3.42
25 26 2.124403 CCAGGCCCAGCAAGCTAG 60.124 66.667 0.00 0.00 0.00 3.42
26 27 4.431131 GCCAGGCCCAGCAAGCTA 62.431 66.667 9.68 0.00 0.00 3.32
37 38 4.133796 GCGTCAAATGGGCCAGGC 62.134 66.667 13.78 1.26 0.00 4.85
38 39 2.216750 CTTGCGTCAAATGGGCCAGG 62.217 60.000 13.78 4.13 0.00 4.45
39 40 1.213537 CTTGCGTCAAATGGGCCAG 59.786 57.895 13.78 0.00 0.00 4.85
40 41 2.274645 CCTTGCGTCAAATGGGCCA 61.275 57.895 9.61 9.61 0.00 5.36
41 42 2.275380 ACCTTGCGTCAAATGGGCC 61.275 57.895 0.00 0.00 0.00 5.80
42 43 1.080569 CACCTTGCGTCAAATGGGC 60.081 57.895 0.00 0.00 0.00 5.36
43 44 0.893270 TCCACCTTGCGTCAAATGGG 60.893 55.000 15.88 7.99 33.23 4.00
44 45 0.958091 TTCCACCTTGCGTCAAATGG 59.042 50.000 12.45 12.45 33.50 3.16
45 46 1.336440 TGTTCCACCTTGCGTCAAATG 59.664 47.619 0.00 0.00 0.00 2.32
46 47 1.608590 CTGTTCCACCTTGCGTCAAAT 59.391 47.619 0.00 0.00 0.00 2.32
47 48 1.021202 CTGTTCCACCTTGCGTCAAA 58.979 50.000 0.00 0.00 0.00 2.69
48 49 0.817634 CCTGTTCCACCTTGCGTCAA 60.818 55.000 0.00 0.00 0.00 3.18
49 50 1.227823 CCTGTTCCACCTTGCGTCA 60.228 57.895 0.00 0.00 0.00 4.35
50 51 2.617274 GCCTGTTCCACCTTGCGTC 61.617 63.158 0.00 0.00 0.00 5.19
51 52 2.594592 GCCTGTTCCACCTTGCGT 60.595 61.111 0.00 0.00 0.00 5.24
52 53 2.594303 TGCCTGTTCCACCTTGCG 60.594 61.111 0.00 0.00 0.00 4.85
53 54 2.270986 CCTGCCTGTTCCACCTTGC 61.271 63.158 0.00 0.00 0.00 4.01
54 55 2.270986 GCCTGCCTGTTCCACCTTG 61.271 63.158 0.00 0.00 0.00 3.61
55 56 2.011617 AAGCCTGCCTGTTCCACCTT 62.012 55.000 0.00 0.00 0.00 3.50
56 57 2.464403 AAGCCTGCCTGTTCCACCT 61.464 57.895 0.00 0.00 0.00 4.00
57 58 2.116125 AAGCCTGCCTGTTCCACC 59.884 61.111 0.00 0.00 0.00 4.61
58 59 2.924105 GCAAGCCTGCCTGTTCCAC 61.924 63.158 0.00 0.00 43.26 4.02
59 60 2.598394 GCAAGCCTGCCTGTTCCA 60.598 61.111 0.00 0.00 43.26 3.53
71 72 2.346541 GGGAAGAGGCAAGGCAAGC 61.347 63.158 0.00 0.00 0.00 4.01
72 73 0.620556 TAGGGAAGAGGCAAGGCAAG 59.379 55.000 0.00 0.00 0.00 4.01
73 74 0.620556 CTAGGGAAGAGGCAAGGCAA 59.379 55.000 0.00 0.00 0.00 4.52
74 75 0.252696 TCTAGGGAAGAGGCAAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
75 76 0.467804 CTCTAGGGAAGAGGCAAGGC 59.532 60.000 0.00 0.00 46.98 4.35
83 84 1.078823 TGGGCTTGACTCTAGGGAAGA 59.921 52.381 0.00 0.00 0.00 2.87
84 85 1.484240 CTGGGCTTGACTCTAGGGAAG 59.516 57.143 0.00 0.00 0.00 3.46
85 86 1.573108 CTGGGCTTGACTCTAGGGAA 58.427 55.000 0.00 0.00 0.00 3.97
86 87 0.325671 CCTGGGCTTGACTCTAGGGA 60.326 60.000 0.00 0.00 0.00 4.20
87 88 1.977293 GCCTGGGCTTGACTCTAGGG 61.977 65.000 4.12 0.00 38.26 3.53
88 89 1.524482 GCCTGGGCTTGACTCTAGG 59.476 63.158 4.12 0.00 38.26 3.02
89 90 1.524482 GGCCTGGGCTTGACTCTAG 59.476 63.158 13.80 0.00 41.60 2.43
90 91 1.995626 GGGCCTGGGCTTGACTCTA 60.996 63.158 20.47 0.00 41.60 2.43
91 92 3.334054 GGGCCTGGGCTTGACTCT 61.334 66.667 20.47 0.00 41.60 3.24
92 93 3.334054 AGGGCCTGGGCTTGACTC 61.334 66.667 20.47 1.85 41.60 3.36
93 94 3.655211 CAGGGCCTGGGCTTGACT 61.655 66.667 26.34 8.69 41.60 3.41
116 117 4.681978 AGGCCTGCGTGTCGAACC 62.682 66.667 3.11 0.00 0.00 3.62
127 128 1.153449 TTGTATTCGCGGAGGCCTG 60.153 57.895 12.00 0.00 35.02 4.85
141 142 0.108992 CGGGCACGAAGCTAGTTGTA 60.109 55.000 0.00 0.00 44.60 2.41
176 182 1.074951 GGGAGTGTGGTTTGAGGGG 59.925 63.158 0.00 0.00 0.00 4.79
282 302 2.857483 GGGGGTATGGGTAGGGGC 60.857 72.222 0.00 0.00 0.00 5.80
511 565 1.917336 TTTAGGTTAGCTGGCCCCGG 61.917 60.000 0.00 0.00 0.00 5.73
520 575 8.403236 CCCAGTACAAACAATATTTAGGTTAGC 58.597 37.037 0.00 0.00 0.00 3.09
539 594 0.388294 GGTAGCATCCGTCCCAGTAC 59.612 60.000 0.00 0.00 0.00 2.73
626 686 1.208776 ACCTAACATCTACGGGGCAAC 59.791 52.381 0.00 0.00 0.00 4.17
627 687 1.483415 GACCTAACATCTACGGGGCAA 59.517 52.381 0.00 0.00 0.00 4.52
628 688 1.117150 GACCTAACATCTACGGGGCA 58.883 55.000 0.00 0.00 0.00 5.36
629 689 1.068741 CAGACCTAACATCTACGGGGC 59.931 57.143 0.00 0.00 0.00 5.80
630 690 1.068741 GCAGACCTAACATCTACGGGG 59.931 57.143 0.00 0.00 0.00 5.73
631 691 2.032620 AGCAGACCTAACATCTACGGG 58.967 52.381 0.00 0.00 0.00 5.28
632 692 2.034812 GGAGCAGACCTAACATCTACGG 59.965 54.545 0.00 0.00 0.00 4.02
633 693 2.952978 AGGAGCAGACCTAACATCTACG 59.047 50.000 0.00 0.00 38.65 3.51
634 694 3.068873 CCAGGAGCAGACCTAACATCTAC 59.931 52.174 0.00 0.00 38.32 2.59
744 810 0.323999 TGAAGCTACCTGCCTACGGA 60.324 55.000 0.00 0.00 44.23 4.69
801 879 9.012161 TGGTTTGTAAAACAACTTGTACTTAGT 57.988 29.630 5.33 0.00 37.90 2.24
812 890 4.944048 AGATGCCTGGTTTGTAAAACAAC 58.056 39.130 5.33 0.00 37.90 3.32
838 933 0.539518 GGCATTTTGGCGGGGTTATT 59.460 50.000 0.00 0.00 31.79 1.40
839 934 2.207580 GGCATTTTGGCGGGGTTAT 58.792 52.632 0.00 0.00 31.79 1.89
840 935 3.701454 GGCATTTTGGCGGGGTTA 58.299 55.556 0.00 0.00 31.79 2.85
871 968 5.474532 ACAAGATTGCAAGCACTATTCAGAA 59.525 36.000 18.24 0.00 0.00 3.02
880 984 4.797471 TCATGTAACAAGATTGCAAGCAC 58.203 39.130 18.24 6.31 0.00 4.40
884 988 6.038603 GCTAGGATCATGTAACAAGATTGCAA 59.961 38.462 0.00 0.00 0.00 4.08
904 1070 8.718102 TTTAAGAATAAGCAGTACAAGCTAGG 57.282 34.615 12.45 0.00 42.53 3.02
1098 1321 4.202284 GGGAAGTGTATATCAAACCCGCTA 60.202 45.833 0.00 0.00 0.00 4.26
1115 1338 4.811063 GCCAAGAAAATAGTGGAGGGAAGT 60.811 45.833 0.00 0.00 34.05 3.01
1116 1339 3.696548 GCCAAGAAAATAGTGGAGGGAAG 59.303 47.826 0.00 0.00 34.05 3.46
1139 1362 5.067674 ACATGAAGTTGCACAGCTAGAAAAA 59.932 36.000 0.00 0.00 0.00 1.94
1329 1573 2.874701 CCCGGCAAGTATCATCTTTGAG 59.125 50.000 0.00 0.00 34.73 3.02
1410 1654 7.121463 CAGAGACAGACCACCCTATATGTATAC 59.879 44.444 0.00 0.00 0.00 1.47
1457 1703 4.109766 TGCAGAATACACGGATTAACTCG 58.890 43.478 0.00 0.00 0.00 4.18
1462 1708 2.159156 ACGCTGCAGAATACACGGATTA 60.159 45.455 20.43 0.00 0.00 1.75
1464 1710 0.175760 ACGCTGCAGAATACACGGAT 59.824 50.000 20.43 0.00 0.00 4.18
1467 1713 1.321743 GAGAACGCTGCAGAATACACG 59.678 52.381 20.43 12.87 0.00 4.49
1468 1714 2.611518 AGAGAACGCTGCAGAATACAC 58.388 47.619 20.43 4.07 0.00 2.90
1531 1779 9.683870 ACGGGTTAACTTATATTTACCAAATGA 57.316 29.630 5.42 0.00 32.38 2.57
1553 1801 1.200020 GCCTGAAAATGAGAACACGGG 59.800 52.381 0.00 0.00 0.00 5.28
1583 1831 0.105039 GCCTACCGTCTGCTGCTAAT 59.895 55.000 0.00 0.00 0.00 1.73
1762 2013 4.026228 CACAGATGAACATAGCTAGCAACG 60.026 45.833 18.83 6.62 0.00 4.10
1890 2149 0.407139 AGCCAAAAGGCCTGAGACAT 59.593 50.000 5.69 0.00 35.12 3.06
2047 2432 5.180868 GCACATCTTAATCCATGACTCCATC 59.819 44.000 0.00 0.00 0.00 3.51
2412 2813 1.339055 TGGCTAAGCAACTACCAGCAG 60.339 52.381 0.00 0.00 33.86 4.24
2482 2886 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
2485 2889 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
2488 2892 4.742167 AGATACATTCATTTCTGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
2489 2893 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
2490 2894 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
2521 2925 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2522 2926 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2523 2927 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2524 2928 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2525 2929 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2526 2930 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2527 2931 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2528 2932 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2529 2933 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2531 2935 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2532 2936 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2533 2937 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2534 2938 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2535 2939 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2536 2940 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2537 2941 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2538 2942 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2539 2943 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2540 2944 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2541 2945 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2542 2946 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2543 2947 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2545 2949 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2552 3014 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2553 3015 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2555 3017 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
2558 3020 0.822164 AACATACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
2584 3046 1.424638 AGCTGTGTTCTGGTAGTGGT 58.575 50.000 0.00 0.00 0.00 4.16
2629 3091 8.301720 CCTAACTCATATATGTAGCAAACCGTA 58.698 37.037 12.42 0.00 0.00 4.02
2632 3094 6.934645 TGCCTAACTCATATATGTAGCAAACC 59.065 38.462 12.42 0.00 0.00 3.27
2660 3123 5.931441 AACACAAGCTTATCAGAGTCAAC 57.069 39.130 0.00 0.00 0.00 3.18
2697 3160 8.804358 TTTTAAGAAAAATGTGGCGTGCCAAAT 61.804 33.333 16.43 13.48 45.51 2.32
2713 3176 3.769844 TGTGGGGTGCAGTTTTAAGAAAA 59.230 39.130 0.00 0.00 0.00 2.29
2759 3223 2.227388 CAGGTGTGGCAAGATTTCTCAC 59.773 50.000 0.00 0.00 0.00 3.51
2817 3281 4.012895 CGCCAGGTGTGTCGCAAC 62.013 66.667 0.00 0.00 34.25 4.17
2822 3286 1.724582 AACTTTGCGCCAGGTGTGTC 61.725 55.000 4.18 0.00 0.00 3.67
2859 3323 6.697019 GGCATGTTAGGTTAGTTTTATGCATG 59.303 38.462 10.16 0.00 40.89 4.06
2881 3345 8.574251 TTTATCAAAATGCTAAACTAGAGGCA 57.426 30.769 0.00 1.43 39.06 4.75
2887 3351 9.724839 GCGGTTATTTATCAAAATGCTAAACTA 57.275 29.630 0.00 0.00 36.02 2.24
2968 3433 2.106511 GCATTGGGGAAGCTAGTCCATA 59.893 50.000 6.77 0.00 39.70 2.74
2971 3436 0.255890 TGCATTGGGGAAGCTAGTCC 59.744 55.000 0.00 0.00 36.90 3.85
2983 3448 0.238289 GTGTCGTGGTTCTGCATTGG 59.762 55.000 0.00 0.00 0.00 3.16
2998 3463 1.047801 AATGGCCAGTTTTGGGTGTC 58.952 50.000 13.05 0.00 45.16 3.67
3000 3465 3.598299 CATTAATGGCCAGTTTTGGGTG 58.402 45.455 12.70 0.00 45.16 4.61
3032 3499 7.368480 TGTAAATGATGCTCATCCATAATCG 57.632 36.000 7.34 0.00 35.76 3.34
3155 3625 6.296435 AGTTACAAGGGGAGGAGTAGATAT 57.704 41.667 0.00 0.00 0.00 1.63
3164 3634 4.981812 ACTACAAAAGTTACAAGGGGAGG 58.018 43.478 0.00 0.00 33.35 4.30
3554 4046 3.347216 TCTTCAGGCTTCAGCAAATACC 58.653 45.455 0.30 0.00 44.36 2.73
3597 4152 5.579753 ATGAACAGAATGCCTCCTATGAT 57.420 39.130 0.00 0.00 42.53 2.45
3901 4505 6.150307 CCTGTGTGTACATGGCAAGTTAATTA 59.850 38.462 0.00 0.00 35.97 1.40
3902 4506 5.048083 CCTGTGTGTACATGGCAAGTTAATT 60.048 40.000 0.00 0.00 35.97 1.40
3903 4507 4.458989 CCTGTGTGTACATGGCAAGTTAAT 59.541 41.667 0.00 0.00 35.97 1.40
3904 4508 3.818210 CCTGTGTGTACATGGCAAGTTAA 59.182 43.478 0.00 0.00 35.97 2.01
4028 4641 4.558898 GCCCTGTATCTCTATTACACCACG 60.559 50.000 0.00 0.00 0.00 4.94
4050 4665 4.545610 TGAAATGAAATTCGTCAACTGGC 58.454 39.130 0.00 0.00 33.67 4.85
4102 4722 1.452953 CTCGACCGGGATGGAATCGA 61.453 60.000 6.32 8.76 46.86 3.59
4226 4857 7.205992 CGGATAAATCAAGACAGATTCTCAGA 58.794 38.462 0.00 0.00 37.24 3.27
4231 4862 5.059833 AGGCGGATAAATCAAGACAGATTC 58.940 41.667 0.00 0.00 37.24 2.52
4250 4881 0.373716 GTAATGGCAACGAAGAGGCG 59.626 55.000 0.00 0.00 42.51 5.52
4254 4885 3.071479 GTTGGAGTAATGGCAACGAAGA 58.929 45.455 0.00 0.00 42.51 2.87
4291 4922 6.012658 TGTTCTATGTCCATTTTCTTGCAC 57.987 37.500 0.00 0.00 0.00 4.57
4295 4926 7.765695 ACACATGTTCTATGTCCATTTTCTT 57.234 32.000 0.00 0.00 0.00 2.52
4334 4965 9.695526 TTGAATCATTAAACTCAGGTTGAATTG 57.304 29.630 0.00 0.00 35.04 2.32
4366 4997 0.546122 ACGGGAAATGAGCTGCCATA 59.454 50.000 0.00 0.00 0.00 2.74
4455 5087 7.346751 TCACTTTTGCTCCTCAAATTTAAGT 57.653 32.000 0.00 0.00 43.53 2.24
4456 5088 8.822652 AATCACTTTTGCTCCTCAAATTTAAG 57.177 30.769 0.00 0.00 43.53 1.85
4459 5091 9.783081 ATTTAATCACTTTTGCTCCTCAAATTT 57.217 25.926 0.00 0.00 43.53 1.82
4460 5092 9.783081 AATTTAATCACTTTTGCTCCTCAAATT 57.217 25.926 0.00 0.00 43.53 1.82
4461 5093 9.783081 AAATTTAATCACTTTTGCTCCTCAAAT 57.217 25.926 0.00 0.00 43.53 2.32
4462 5094 9.044150 CAAATTTAATCACTTTTGCTCCTCAAA 57.956 29.630 0.00 0.00 42.50 2.69
4463 5095 8.420222 TCAAATTTAATCACTTTTGCTCCTCAA 58.580 29.630 0.00 0.00 0.00 3.02
4464 5096 7.950512 TCAAATTTAATCACTTTTGCTCCTCA 58.049 30.769 0.00 0.00 0.00 3.86
4465 5097 7.543520 CCTCAAATTTAATCACTTTTGCTCCTC 59.456 37.037 0.00 0.00 0.00 3.71
4466 5098 7.233348 TCCTCAAATTTAATCACTTTTGCTCCT 59.767 33.333 0.00 0.00 0.00 3.69
4467 5099 7.378181 TCCTCAAATTTAATCACTTTTGCTCC 58.622 34.615 0.00 0.00 0.00 4.70
4468 5100 7.062722 GCTCCTCAAATTTAATCACTTTTGCTC 59.937 37.037 0.00 0.00 0.00 4.26
4469 5101 6.870439 GCTCCTCAAATTTAATCACTTTTGCT 59.130 34.615 0.00 0.00 0.00 3.91
4470 5102 6.646240 TGCTCCTCAAATTTAATCACTTTTGC 59.354 34.615 0.00 0.00 0.00 3.68
4471 5103 8.592105 TTGCTCCTCAAATTTAATCACTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
4472 5104 9.612066 TTTTGCTCCTCAAATTTAATCACTTTT 57.388 25.926 0.00 0.00 43.53 2.27
4473 5105 9.264719 CTTTTGCTCCTCAAATTTAATCACTTT 57.735 29.630 0.00 0.00 43.53 2.66
4474 5106 8.424133 ACTTTTGCTCCTCAAATTTAATCACTT 58.576 29.630 0.00 0.00 43.53 3.16
4475 5107 7.869429 CACTTTTGCTCCTCAAATTTAATCACT 59.131 33.333 0.00 0.00 43.53 3.41
4476 5108 7.867403 TCACTTTTGCTCCTCAAATTTAATCAC 59.133 33.333 0.00 0.00 43.53 3.06
4477 5109 7.950512 TCACTTTTGCTCCTCAAATTTAATCA 58.049 30.769 0.00 0.00 43.53 2.57
4478 5110 8.992835 ATCACTTTTGCTCCTCAAATTTAATC 57.007 30.769 0.00 0.00 43.53 1.75
4520 5152 4.226394 TGGCTTAAGGGATGTGCTTAGTTA 59.774 41.667 4.29 0.00 0.00 2.24
4526 5158 2.562738 GTTTTGGCTTAAGGGATGTGCT 59.437 45.455 4.29 0.00 0.00 4.40
4540 5172 1.691976 AGCAAAGGGGTAAGTTTTGGC 59.308 47.619 0.00 0.00 33.54 4.52
4594 5228 6.273071 CAAAGAGGTCAAGTTTTGGGTTTAG 58.727 40.000 0.00 0.00 0.00 1.85
4642 5276 1.078426 AACCGAGCAGCCACATACC 60.078 57.895 0.00 0.00 0.00 2.73
4658 5292 3.056821 GGGGCACAGGAATTTTAGTCAAC 60.057 47.826 0.00 0.00 0.00 3.18
4701 5464 1.139989 CGATAGCGGCTAATGTGGTG 58.860 55.000 14.54 0.00 0.00 4.17
4715 5478 0.830648 TGAAAGGGGACAGCCGATAG 59.169 55.000 0.00 0.00 33.83 2.08
4716 5479 1.140852 CATGAAAGGGGACAGCCGATA 59.859 52.381 0.00 0.00 33.83 2.92
4717 5480 0.107017 CATGAAAGGGGACAGCCGAT 60.107 55.000 0.00 0.00 33.83 4.18
4735 5498 0.179004 ACCCGTTTTGCCAGTCATCA 60.179 50.000 0.00 0.00 0.00 3.07
4741 5504 0.596082 CAACCTACCCGTTTTGCCAG 59.404 55.000 0.00 0.00 0.00 4.85
4761 5524 2.264794 CAAGGGTCCGACGAAGGG 59.735 66.667 0.00 0.00 0.00 3.95
4764 5527 0.249996 GTTTCCAAGGGTCCGACGAA 60.250 55.000 0.00 0.00 0.00 3.85
4766 5529 1.670083 GGTTTCCAAGGGTCCGACG 60.670 63.158 0.00 0.00 0.00 5.12
4782 5545 1.069765 CTCTCGTGTTGGCACAGGT 59.930 57.895 0.00 0.00 45.50 4.00
4787 5550 1.480212 ATGGGTCTCTCGTGTTGGCA 61.480 55.000 0.00 0.00 0.00 4.92
4790 5553 1.442769 CCAATGGGTCTCTCGTGTTG 58.557 55.000 0.00 0.00 0.00 3.33
4817 5580 3.610669 TGGTTGCGCCGCCAAATT 61.611 55.556 16.23 0.00 41.21 1.82
4824 5587 2.252260 CTTCTTGTGGTTGCGCCG 59.748 61.111 4.18 0.00 41.21 6.46
4834 5597 1.148310 CGCCGAATCACACTTCTTGT 58.852 50.000 0.00 0.00 39.97 3.16
4835 5598 0.443869 CCGCCGAATCACACTTCTTG 59.556 55.000 0.00 0.00 0.00 3.02
4836 5599 1.298859 GCCGCCGAATCACACTTCTT 61.299 55.000 0.00 0.00 0.00 2.52
4837 5600 1.741770 GCCGCCGAATCACACTTCT 60.742 57.895 0.00 0.00 0.00 2.85
4838 5601 2.785258 GCCGCCGAATCACACTTC 59.215 61.111 0.00 0.00 0.00 3.01
4839 5602 3.118454 CGCCGCCGAATCACACTT 61.118 61.111 0.00 0.00 36.29 3.16
4843 5606 4.811761 GTTGCGCCGCCGAATCAC 62.812 66.667 6.63 0.00 36.29 3.06
4852 5615 3.726517 CTTCTGGTGGTTGCGCCG 61.727 66.667 4.18 0.00 41.21 6.46
4853 5616 2.594592 ACTTCTGGTGGTTGCGCC 60.595 61.111 4.18 0.00 37.90 6.53
4854 5617 2.639286 CACTTCTGGTGGTTGCGC 59.361 61.111 0.00 0.00 41.90 6.09
4855 5618 2.639286 GCACTTCTGGTGGTTGCG 59.361 61.111 0.00 0.00 45.44 4.85
4866 5629 3.345808 TTGCCTGCGTCGCACTTC 61.346 61.111 17.58 8.64 35.56 3.01
4879 5642 1.003233 GAGTGGTGGAGGAGTTGCC 60.003 63.158 0.00 0.00 0.00 4.52
4907 5670 0.876342 GCGTCTGAATCCATCCCGTC 60.876 60.000 0.00 0.00 0.00 4.79
4909 5672 0.673985 TAGCGTCTGAATCCATCCCG 59.326 55.000 0.00 0.00 0.00 5.14
4928 5691 0.531974 ATGTCGCCGTCACAAGTTGT 60.532 50.000 1.64 1.64 0.00 3.32
4929 5692 0.110688 CATGTCGCCGTCACAAGTTG 60.111 55.000 0.00 0.00 0.00 3.16
4943 5706 2.295629 TGAGCATCTCCTCGATCATGTC 59.704 50.000 0.00 0.00 34.56 3.06
4946 5709 4.378774 CTTTTGAGCATCTCCTCGATCAT 58.621 43.478 0.00 0.00 34.56 2.45
4947 5710 3.431346 CCTTTTGAGCATCTCCTCGATCA 60.431 47.826 0.00 0.00 34.56 2.92
4948 5711 3.129871 CCTTTTGAGCATCTCCTCGATC 58.870 50.000 0.00 0.00 34.56 3.69
4949 5712 2.503356 ACCTTTTGAGCATCTCCTCGAT 59.497 45.455 0.00 0.00 34.56 3.59
4950 5713 1.902508 ACCTTTTGAGCATCTCCTCGA 59.097 47.619 0.00 0.00 34.56 4.04
4951 5714 2.005451 CACCTTTTGAGCATCTCCTCG 58.995 52.381 0.00 0.00 34.56 4.63
4952 5715 1.742268 GCACCTTTTGAGCATCTCCTC 59.258 52.381 0.00 0.00 34.92 3.71
4953 5716 1.615384 GGCACCTTTTGAGCATCTCCT 60.615 52.381 0.00 0.00 34.92 3.69
4954 5717 0.813821 GGCACCTTTTGAGCATCTCC 59.186 55.000 0.00 0.00 34.92 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.