Multiple sequence alignment - TraesCS5A01G287200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G287200 chr5A 100.000 3801 0 0 1 3801 495101828 495098028 0.000000e+00 7020.0
1 TraesCS5A01G287200 chr5A 95.899 829 30 3 1 827 2119440 2120266 0.000000e+00 1339.0
2 TraesCS5A01G287200 chr5D 90.943 1325 86 16 947 2250 391905336 391904025 0.000000e+00 1751.0
3 TraesCS5A01G287200 chr5D 87.723 505 34 14 2997 3483 391903230 391902736 7.130000e-157 564.0
4 TraesCS5A01G287200 chr5D 93.493 292 11 3 3518 3801 391902639 391902348 9.760000e-116 427.0
5 TraesCS5A01G287200 chr5D 82.500 320 41 12 2566 2874 391903611 391903296 2.250000e-67 267.0
6 TraesCS5A01G287200 chr5B 85.456 1382 107 44 848 2210 472680876 472679570 0.000000e+00 1352.0
7 TraesCS5A01G287200 chr5B 92.462 796 44 14 41 827 411376796 411377584 0.000000e+00 1123.0
8 TraesCS5A01G287200 chr5B 85.743 505 31 20 2997 3483 472678756 472678275 2.640000e-136 496.0
9 TraesCS5A01G287200 chr5B 91.083 314 22 3 3493 3801 472678235 472677923 1.630000e-113 420.0
10 TraesCS5A01G287200 chr5B 82.298 322 40 12 2566 2874 472679139 472678822 2.910000e-66 263.0
11 TraesCS5A01G287200 chr1A 95.433 832 35 3 1 829 502684139 502684970 0.000000e+00 1323.0
12 TraesCS5A01G287200 chr3A 94.331 829 31 8 1 827 477413102 477412288 0.000000e+00 1256.0
13 TraesCS5A01G287200 chr6A 95.312 768 34 2 1 766 549177074 549177841 0.000000e+00 1218.0
14 TraesCS5A01G287200 chrUn 93.116 828 46 9 8 826 2888450 2887625 0.000000e+00 1203.0
15 TraesCS5A01G287200 chr2D 92.584 836 48 13 1 827 59011961 59011131 0.000000e+00 1188.0
16 TraesCS5A01G287200 chr4D 91.947 832 59 7 1 827 385475101 385475929 0.000000e+00 1158.0
17 TraesCS5A01G287200 chr7B 92.640 788 43 13 54 831 116399531 116398749 0.000000e+00 1120.0
18 TraesCS5A01G287200 chr7D 87.143 70 9 0 1136 1205 184528236 184528167 3.150000e-11 80.5
19 TraesCS5A01G287200 chr6B 86.441 59 8 0 5 63 638500374 638500316 8.810000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G287200 chr5A 495098028 495101828 3800 True 7020.00 7020 100.00000 1 3801 1 chr5A.!!$R1 3800
1 TraesCS5A01G287200 chr5A 2119440 2120266 826 False 1339.00 1339 95.89900 1 827 1 chr5A.!!$F1 826
2 TraesCS5A01G287200 chr5D 391902348 391905336 2988 True 752.25 1751 88.66475 947 3801 4 chr5D.!!$R1 2854
3 TraesCS5A01G287200 chr5B 411376796 411377584 788 False 1123.00 1123 92.46200 41 827 1 chr5B.!!$F1 786
4 TraesCS5A01G287200 chr5B 472677923 472680876 2953 True 632.75 1352 86.14500 848 3801 4 chr5B.!!$R1 2953
5 TraesCS5A01G287200 chr1A 502684139 502684970 831 False 1323.00 1323 95.43300 1 829 1 chr1A.!!$F1 828
6 TraesCS5A01G287200 chr3A 477412288 477413102 814 True 1256.00 1256 94.33100 1 827 1 chr3A.!!$R1 826
7 TraesCS5A01G287200 chr6A 549177074 549177841 767 False 1218.00 1218 95.31200 1 766 1 chr6A.!!$F1 765
8 TraesCS5A01G287200 chrUn 2887625 2888450 825 True 1203.00 1203 93.11600 8 826 1 chrUn.!!$R1 818
9 TraesCS5A01G287200 chr2D 59011131 59011961 830 True 1188.00 1188 92.58400 1 827 1 chr2D.!!$R1 826
10 TraesCS5A01G287200 chr4D 385475101 385475929 828 False 1158.00 1158 91.94700 1 827 1 chr4D.!!$F1 826
11 TraesCS5A01G287200 chr7B 116398749 116399531 782 True 1120.00 1120 92.64000 54 831 1 chr7B.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 861 0.033090 CCGTAAATAGGAGGTCCCGC 59.967 60.0 0.0 0.0 40.87 6.13 F
890 909 0.107508 GCTTGACTCTATGGGCTGCA 60.108 55.0 0.5 0.0 0.00 4.41 F
1883 1918 0.179048 TTGTATGCTCGCCCCTGATG 60.179 55.0 0.0 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 2332 0.038067 GCCATGCACATGTGAAAGCA 60.038 50.0 29.8 19.74 41.73 3.91 R
2285 2333 0.038067 TGCCATGCACATGTGAAAGC 60.038 50.0 29.8 24.38 37.11 3.51 R
2995 3218 0.040958 CGAGAGCAACCAAACACAGC 60.041 55.0 0.0 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.660887 TTTGTGAACAAATTTGGAAAGCTC 57.339 33.333 21.74 8.81 40.55 4.09
748 764 2.112198 CGCATTATGTGTGGGCCGT 61.112 57.895 0.00 0.00 34.65 5.68
831 848 3.556775 CGGCGAATAGGATTTTCCGTAAA 59.443 43.478 0.00 0.00 42.75 2.01
832 849 4.212636 CGGCGAATAGGATTTTCCGTAAAT 59.787 41.667 0.00 0.00 42.75 1.40
833 850 5.406175 CGGCGAATAGGATTTTCCGTAAATA 59.594 40.000 0.00 0.00 42.75 1.40
834 851 6.400727 CGGCGAATAGGATTTTCCGTAAATAG 60.401 42.308 0.00 0.00 42.75 1.73
835 852 6.128363 GGCGAATAGGATTTTCCGTAAATAGG 60.128 42.308 0.00 0.00 42.75 2.57
836 853 6.647895 GCGAATAGGATTTTCCGTAAATAGGA 59.352 38.462 0.00 0.00 42.75 2.94
837 854 7.148623 GCGAATAGGATTTTCCGTAAATAGGAG 60.149 40.741 0.00 0.00 42.75 3.69
838 855 7.331193 CGAATAGGATTTTCCGTAAATAGGAGG 59.669 40.741 0.00 0.00 42.75 4.30
839 856 5.970501 AGGATTTTCCGTAAATAGGAGGT 57.029 39.130 0.00 0.00 42.75 3.85
840 857 5.926663 AGGATTTTCCGTAAATAGGAGGTC 58.073 41.667 0.00 0.00 42.75 3.85
841 858 5.061853 GGATTTTCCGTAAATAGGAGGTCC 58.938 45.833 0.00 0.00 39.22 4.46
842 859 4.492494 TTTTCCGTAAATAGGAGGTCCC 57.508 45.455 0.00 0.00 39.22 4.46
843 860 1.696063 TCCGTAAATAGGAGGTCCCG 58.304 55.000 0.00 0.00 40.87 5.14
844 861 0.033090 CCGTAAATAGGAGGTCCCGC 59.967 60.000 0.00 0.00 40.87 6.13
845 862 0.318445 CGTAAATAGGAGGTCCCGCG 60.318 60.000 0.00 0.00 40.87 6.46
846 863 1.035139 GTAAATAGGAGGTCCCGCGA 58.965 55.000 8.23 0.00 40.87 5.87
858 875 1.064357 GTCCCGCGAGACTTCTCTAAG 59.936 57.143 14.06 0.00 40.75 2.18
868 887 5.865013 CGAGACTTCTCTAAGAAAAAGGTCC 59.135 44.000 4.76 0.00 40.75 4.46
890 909 0.107508 GCTTGACTCTATGGGCTGCA 60.108 55.000 0.50 0.00 0.00 4.41
891 910 1.950828 CTTGACTCTATGGGCTGCAG 58.049 55.000 10.11 10.11 0.00 4.41
914 933 3.283259 GCAAATAAGGCCTGGTAGAGT 57.717 47.619 5.69 0.00 0.00 3.24
922 941 2.529312 CCTGGTAGAGTTAGGCCCC 58.471 63.158 0.00 0.00 0.00 5.80
923 942 1.400530 CCTGGTAGAGTTAGGCCCCG 61.401 65.000 0.00 0.00 0.00 5.73
925 944 0.252375 TGGTAGAGTTAGGCCCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
926 945 1.006998 TGGTAGAGTTAGGCCCCGTTA 59.993 52.381 0.00 0.00 0.00 3.18
930 949 0.609662 GAGTTAGGCCCCGTTACACA 59.390 55.000 0.00 0.00 0.00 3.72
931 950 0.322648 AGTTAGGCCCCGTTACACAC 59.677 55.000 0.00 0.00 0.00 3.82
940 965 2.739671 GTTACACACGTCCGGGCC 60.740 66.667 0.00 0.00 0.00 5.80
943 968 2.789845 TTACACACGTCCGGGCCATG 62.790 60.000 4.39 1.01 0.00 3.66
945 970 4.388499 ACACGTCCGGGCCATGAC 62.388 66.667 11.74 9.61 0.00 3.06
959 984 3.378331 ATGACCTCGTCGCGTCGTC 62.378 63.158 23.80 15.25 34.95 4.20
1015 1041 1.953311 GCCTCGCAAACCCATTTCCTA 60.953 52.381 0.00 0.00 0.00 2.94
1016 1042 2.654863 CCTCGCAAACCCATTTCCTAT 58.345 47.619 0.00 0.00 0.00 2.57
1019 1045 2.025793 TCGCAAACCCATTTCCTATCCA 60.026 45.455 0.00 0.00 0.00 3.41
1021 1047 3.004734 CGCAAACCCATTTCCTATCCATC 59.995 47.826 0.00 0.00 0.00 3.51
1022 1048 3.321968 GCAAACCCATTTCCTATCCATCC 59.678 47.826 0.00 0.00 0.00 3.51
1030 1056 6.556116 CCCATTTCCTATCCATCCAAAAGAAT 59.444 38.462 0.00 0.00 0.00 2.40
1059 1085 0.958876 CCGCAAACCCTAACCTCACC 60.959 60.000 0.00 0.00 0.00 4.02
1138 1164 1.089920 ACTACTACCGCACGTTCGAT 58.910 50.000 9.73 0.00 0.00 3.59
1210 1236 1.446272 CGAGGGCGAGAAGTTCCAC 60.446 63.158 0.00 0.00 40.82 4.02
1380 1406 3.007940 CACATCAAGTTCTCCCAGGTACA 59.992 47.826 0.00 0.00 0.00 2.90
1413 1439 0.320508 GGCCCGATCTAACGATTCCC 60.321 60.000 0.00 0.00 35.09 3.97
1447 1473 1.298157 TTCGGATTGAAGCGTGGCAG 61.298 55.000 0.00 0.00 31.44 4.85
1486 1512 1.869132 CGCTGCATACTTTTGCGCC 60.869 57.895 4.18 0.00 45.77 6.53
1528 1554 3.434319 ACGATGCTTGCTTGCGGG 61.434 61.111 0.00 0.00 35.36 6.13
1555 1590 6.470235 GCTGTGAATGAATTGTTAGATTTCCG 59.530 38.462 0.00 0.00 0.00 4.30
1625 1660 5.863935 GCTGTAGATTTGTTTGATTTGGTCC 59.136 40.000 0.00 0.00 0.00 4.46
1632 1667 2.697751 TGTTTGATTTGGTCCCTGGTTG 59.302 45.455 0.00 0.00 0.00 3.77
1670 1705 7.255491 TGTAGATTGAAATGCTATGAGCTTG 57.745 36.000 0.00 0.00 42.97 4.01
1714 1749 2.163412 TGCGATTGTAATGTCTTTGGGC 59.837 45.455 0.00 0.00 0.00 5.36
1830 1865 1.234821 CTGCGGCAACAGGTTTCTTA 58.765 50.000 3.44 0.00 33.85 2.10
1856 1891 6.093082 AGTGTTACCGCTTACCATTCATTTAC 59.907 38.462 0.00 0.00 0.00 2.01
1883 1918 0.179048 TTGTATGCTCGCCCCTGATG 60.179 55.000 0.00 0.00 0.00 3.07
1899 1934 3.539604 CTGATGTCTTTGTGGAGGGATC 58.460 50.000 0.00 0.00 0.00 3.36
1900 1935 2.912295 TGATGTCTTTGTGGAGGGATCA 59.088 45.455 0.00 0.00 0.00 2.92
1962 2001 3.751175 TGATTTACTTTCAGCCGAACCAG 59.249 43.478 0.00 0.00 0.00 4.00
2001 2040 8.514330 TTTCTTTGTTTAGGAGTACACACATT 57.486 30.769 0.00 0.00 0.00 2.71
2002 2041 8.514330 TTCTTTGTTTAGGAGTACACACATTT 57.486 30.769 0.00 0.00 0.00 2.32
2003 2042 8.149973 TCTTTGTTTAGGAGTACACACATTTC 57.850 34.615 0.00 0.00 0.00 2.17
2004 2043 7.990886 TCTTTGTTTAGGAGTACACACATTTCT 59.009 33.333 0.00 0.00 0.00 2.52
2005 2044 9.268268 CTTTGTTTAGGAGTACACACATTTCTA 57.732 33.333 0.00 0.00 0.00 2.10
2006 2045 9.616156 TTTGTTTAGGAGTACACACATTTCTAA 57.384 29.630 0.00 0.00 0.00 2.10
2007 2046 9.787435 TTGTTTAGGAGTACACACATTTCTAAT 57.213 29.630 0.00 0.00 0.00 1.73
2040 2079 5.122869 TGCATGTTTATTCTTCTGACTGCTC 59.877 40.000 0.00 0.00 0.00 4.26
2048 2087 8.532186 TTATTCTTCTGACTGCTCTAGAATCT 57.468 34.615 0.00 0.00 34.95 2.40
2059 2098 9.195411 GACTGCTCTAGAATCTTATCATGAAAG 57.805 37.037 0.00 5.46 0.00 2.62
2128 2175 0.829333 AGCTGATCCCTGCACTGTAG 59.171 55.000 0.00 0.00 39.38 2.74
2134 2181 0.764890 TCCCTGCACTGTAGCTTGTT 59.235 50.000 0.00 0.00 34.99 2.83
2153 2201 2.270275 TGGTGTTTTTGCACAGAACG 57.730 45.000 0.00 0.00 40.89 3.95
2161 2209 0.321564 TTGCACAGAACGGCAGCTAT 60.322 50.000 0.00 0.00 41.68 2.97
2169 2217 4.814771 ACAGAACGGCAGCTATTATTTACC 59.185 41.667 0.00 0.00 0.00 2.85
2174 2222 4.348754 ACGGCAGCTATTATTTACCCCTTA 59.651 41.667 0.00 0.00 0.00 2.69
2175 2223 4.694037 CGGCAGCTATTATTTACCCCTTAC 59.306 45.833 0.00 0.00 0.00 2.34
2179 2227 6.293698 CAGCTATTATTTACCCCTTACGGTT 58.706 40.000 0.00 0.00 37.34 4.44
2180 2228 7.444299 CAGCTATTATTTACCCCTTACGGTTA 58.556 38.462 0.00 0.00 37.34 2.85
2185 2233 8.876303 ATTATTTACCCCTTACGGTTAAAACA 57.124 30.769 0.00 0.00 37.34 2.83
2190 2238 4.347876 ACCCCTTACGGTTAAAACAGTACT 59.652 41.667 5.51 0.00 38.86 2.73
2214 2262 8.928448 ACTTATGTCATATCTTATCACTGGTGT 58.072 33.333 0.53 0.00 0.00 4.16
2220 2268 9.847706 GTCATATCTTATCACTGGTGTATACAG 57.152 37.037 5.62 0.00 41.64 2.74
2230 2278 7.327975 TCACTGGTGTATACAGAATAACTTGG 58.672 38.462 5.62 0.00 39.24 3.61
2231 2279 6.037172 CACTGGTGTATACAGAATAACTTGGC 59.963 42.308 5.62 0.00 39.24 4.52
2232 2280 6.056090 TGGTGTATACAGAATAACTTGGCA 57.944 37.500 5.62 0.00 0.00 4.92
2244 2292 7.436673 CAGAATAACTTGGCATCTCTAGTACAC 59.563 40.741 0.00 0.00 0.00 2.90
2258 2306 9.900710 ATCTCTAGTACACGCATTCTTATAAAG 57.099 33.333 0.00 0.00 0.00 1.85
2266 2314 6.597672 ACACGCATTCTTATAAAGTGGATCAA 59.402 34.615 0.00 0.00 32.98 2.57
2268 2316 7.429340 CACGCATTCTTATAAAGTGGATCAAAC 59.571 37.037 0.00 0.00 0.00 2.93
2276 2324 4.937201 AAAGTGGATCAAACCAAACTCC 57.063 40.909 0.00 0.00 41.87 3.85
2278 2326 3.490348 AGTGGATCAAACCAAACTCCTG 58.510 45.455 0.00 0.00 41.87 3.86
2280 2328 4.104102 AGTGGATCAAACCAAACTCCTGTA 59.896 41.667 0.00 0.00 41.87 2.74
2284 2332 6.553100 TGGATCAAACCAAACTCCTGTAATTT 59.447 34.615 0.00 0.00 36.96 1.82
2285 2333 6.868339 GGATCAAACCAAACTCCTGTAATTTG 59.132 38.462 0.00 0.00 33.90 2.32
2287 2335 5.362430 TCAAACCAAACTCCTGTAATTTGCT 59.638 36.000 0.00 0.00 32.98 3.91
2288 2336 5.869649 AACCAAACTCCTGTAATTTGCTT 57.130 34.783 0.00 0.00 32.98 3.91
2289 2337 5.869649 ACCAAACTCCTGTAATTTGCTTT 57.130 34.783 0.00 0.00 32.98 3.51
2290 2338 5.842907 ACCAAACTCCTGTAATTTGCTTTC 58.157 37.500 0.00 0.00 32.98 2.62
2291 2339 5.362430 ACCAAACTCCTGTAATTTGCTTTCA 59.638 36.000 0.00 0.00 32.98 2.69
2292 2340 5.691754 CCAAACTCCTGTAATTTGCTTTCAC 59.308 40.000 0.00 0.00 32.98 3.18
2293 2341 6.272318 CAAACTCCTGTAATTTGCTTTCACA 58.728 36.000 0.00 0.00 0.00 3.58
2294 2342 6.655078 AACTCCTGTAATTTGCTTTCACAT 57.345 33.333 0.00 0.00 0.00 3.21
2295 2343 6.017400 ACTCCTGTAATTTGCTTTCACATG 57.983 37.500 0.00 0.00 0.00 3.21
2296 2344 5.536161 ACTCCTGTAATTTGCTTTCACATGT 59.464 36.000 0.00 0.00 0.00 3.21
2297 2345 5.771469 TCCTGTAATTTGCTTTCACATGTG 58.229 37.500 20.18 20.18 0.00 3.21
2298 2346 4.386652 CCTGTAATTTGCTTTCACATGTGC 59.613 41.667 21.38 9.96 0.00 4.57
2299 2347 4.941657 TGTAATTTGCTTTCACATGTGCA 58.058 34.783 21.38 12.67 0.00 4.57
2300 2348 5.539979 TGTAATTTGCTTTCACATGTGCAT 58.460 33.333 21.38 3.58 35.27 3.96
2301 2349 5.405873 TGTAATTTGCTTTCACATGTGCATG 59.594 36.000 21.38 13.53 44.15 4.06
2302 2350 2.442212 TTGCTTTCACATGTGCATGG 57.558 45.000 21.38 11.40 42.91 3.66
2303 2351 0.038067 TGCTTTCACATGTGCATGGC 60.038 50.000 21.38 19.72 42.91 4.40
2304 2352 0.038067 GCTTTCACATGTGCATGGCA 60.038 50.000 21.38 0.00 42.91 4.92
2305 2353 1.605968 GCTTTCACATGTGCATGGCAA 60.606 47.619 21.38 6.14 41.47 4.52
2306 2354 2.333926 CTTTCACATGTGCATGGCAAG 58.666 47.619 21.38 11.03 41.47 4.01
2307 2355 1.618487 TTCACATGTGCATGGCAAGA 58.382 45.000 21.38 0.00 41.47 3.02
2308 2356 1.618487 TCACATGTGCATGGCAAGAA 58.382 45.000 21.38 0.00 41.47 2.52
2309 2357 1.962100 TCACATGTGCATGGCAAGAAA 59.038 42.857 21.38 0.00 41.47 2.52
2310 2358 2.063266 CACATGTGCATGGCAAGAAAC 58.937 47.619 13.94 0.00 41.47 2.78
2311 2359 1.687660 ACATGTGCATGGCAAGAAACA 59.312 42.857 15.52 0.00 41.47 2.83
2312 2360 2.063266 CATGTGCATGGCAAGAAACAC 58.937 47.619 4.35 0.00 41.47 3.32
2313 2361 1.109609 TGTGCATGGCAAGAAACACA 58.890 45.000 0.00 0.00 41.47 3.72
2314 2362 1.479730 TGTGCATGGCAAGAAACACAA 59.520 42.857 8.35 0.00 41.47 3.33
2315 2363 2.102757 TGTGCATGGCAAGAAACACAAT 59.897 40.909 8.35 0.00 41.47 2.71
2316 2364 3.320256 TGTGCATGGCAAGAAACACAATA 59.680 39.130 8.35 0.00 41.47 1.90
2317 2365 3.674753 GTGCATGGCAAGAAACACAATAC 59.325 43.478 0.00 0.00 41.47 1.89
2318 2366 3.253230 GCATGGCAAGAAACACAATACC 58.747 45.455 0.00 0.00 0.00 2.73
2319 2367 3.305950 GCATGGCAAGAAACACAATACCA 60.306 43.478 0.00 0.00 0.00 3.25
2320 2368 4.621274 GCATGGCAAGAAACACAATACCAT 60.621 41.667 0.00 0.00 37.13 3.55
2321 2369 5.481105 CATGGCAAGAAACACAATACCATT 58.519 37.500 0.00 0.00 34.50 3.16
2322 2370 6.629128 CATGGCAAGAAACACAATACCATTA 58.371 36.000 0.00 0.00 34.50 1.90
2323 2371 6.266168 TGGCAAGAAACACAATACCATTAG 57.734 37.500 0.00 0.00 0.00 1.73
2324 2372 5.772672 TGGCAAGAAACACAATACCATTAGT 59.227 36.000 0.00 0.00 0.00 2.24
2325 2373 6.266558 TGGCAAGAAACACAATACCATTAGTT 59.733 34.615 0.00 0.00 0.00 2.24
2326 2374 6.586082 GGCAAGAAACACAATACCATTAGTTG 59.414 38.462 0.00 0.00 0.00 3.16
2327 2375 7.145323 GCAAGAAACACAATACCATTAGTTGT 58.855 34.615 0.00 0.00 36.57 3.32
2328 2376 8.293867 GCAAGAAACACAATACCATTAGTTGTA 58.706 33.333 0.00 0.00 34.55 2.41
2331 2379 8.458843 AGAAACACAATACCATTAGTTGTATGC 58.541 33.333 0.00 0.00 34.55 3.14
2332 2380 7.695480 AACACAATACCATTAGTTGTATGCA 57.305 32.000 0.00 0.00 34.55 3.96
2340 2388 5.129155 ACCATTAGTTGTATGCATTTGCCAT 59.871 36.000 3.54 0.00 41.18 4.40
2345 2393 5.603596 AGTTGTATGCATTTGCCATAATGG 58.396 37.500 3.54 0.00 41.55 3.16
2349 2397 3.977134 TGCATTTGCCATAATGGTTGT 57.023 38.095 0.00 0.00 40.46 3.32
2354 2402 4.696479 TTTGCCATAATGGTTGTGGTTT 57.304 36.364 7.21 0.00 43.18 3.27
2373 2421 7.769044 TGTGGTTTGAGCTAAATATTCCTAGAC 59.231 37.037 0.00 0.00 0.00 2.59
2377 2425 7.432148 TTGAGCTAAATATTCCTAGACCACA 57.568 36.000 0.00 0.00 0.00 4.17
2379 2427 8.034313 TGAGCTAAATATTCCTAGACCACATT 57.966 34.615 0.00 0.00 0.00 2.71
2394 2442 3.997021 ACCACATTCGTTGTCTCATCTTC 59.003 43.478 0.00 0.00 36.00 2.87
2405 2453 7.915923 TCGTTGTCTCATCTTCTGTATGTTATC 59.084 37.037 0.00 0.00 0.00 1.75
2407 2455 9.593134 GTTGTCTCATCTTCTGTATGTTATCTT 57.407 33.333 0.00 0.00 0.00 2.40
2413 2461 9.591792 TCATCTTCTGTATGTTATCTTTGTGAG 57.408 33.333 0.00 0.00 0.00 3.51
2453 2501 9.751542 CTACTCCGTGTATTCTTTCATATCTTT 57.248 33.333 0.00 0.00 0.00 2.52
2454 2502 8.425577 ACTCCGTGTATTCTTTCATATCTTTG 57.574 34.615 0.00 0.00 0.00 2.77
2457 2505 9.878667 TCCGTGTATTCTTTCATATCTTTGTTA 57.121 29.630 0.00 0.00 0.00 2.41
2470 2518 9.764363 TCATATCTTTGTTATGGTATGACAGTC 57.236 33.333 0.00 0.00 30.08 3.51
2471 2519 9.546428 CATATCTTTGTTATGGTATGACAGTCA 57.454 33.333 5.50 5.50 30.08 3.41
2476 2524 5.965922 TGTTATGGTATGACAGTCAGACAG 58.034 41.667 25.85 0.00 40.14 3.51
2493 2542 0.457035 CAGTGTGCTTGCTTGTTGGT 59.543 50.000 0.00 0.00 0.00 3.67
2510 2559 1.064758 TGGTTTTGTGTCTCTGGCAGT 60.065 47.619 15.27 0.00 0.00 4.40
2553 2602 8.131847 TGATCCATGGAATTCATTTTTACACA 57.868 30.769 20.67 0.00 32.92 3.72
2557 2606 7.758980 TCCATGGAATTCATTTTTACACATTCG 59.241 33.333 13.46 0.00 32.92 3.34
2558 2607 7.545265 CCATGGAATTCATTTTTACACATTCGT 59.455 33.333 5.56 0.00 32.92 3.85
2559 2608 8.924691 CATGGAATTCATTTTTACACATTCGTT 58.075 29.630 7.93 0.00 32.92 3.85
2561 2610 7.095857 TGGAATTCATTTTTACACATTCGTTGC 60.096 33.333 7.93 0.00 0.00 4.17
2608 2820 1.477295 CTCGGACCAGGGAACTTCTAC 59.523 57.143 0.00 0.00 40.21 2.59
2648 2860 2.269172 GCCTGAACTACGGCTAAGAAC 58.731 52.381 0.00 0.00 42.98 3.01
2657 2869 0.038526 CGGCTAAGAACCGTCACAGT 60.039 55.000 0.00 0.00 45.70 3.55
2670 2882 4.954933 ACAGTGGTTGTGCTTCGT 57.045 50.000 0.00 0.00 38.99 3.85
2674 2886 1.603802 CAGTGGTTGTGCTTCGTCATT 59.396 47.619 0.00 0.00 0.00 2.57
2687 2899 4.645956 CTTCGTCATTGAAGACAGAATGC 58.354 43.478 1.54 0.00 46.64 3.56
2689 2901 5.072040 TCGTCATTGAAGACAGAATGCTA 57.928 39.130 0.00 0.00 42.53 3.49
2697 2909 5.946298 TGAAGACAGAATGCTATGCAAAAG 58.054 37.500 0.00 0.00 43.62 2.27
2698 2910 4.978083 AGACAGAATGCTATGCAAAAGG 57.022 40.909 0.00 0.00 43.62 3.11
2702 2914 6.154021 AGACAGAATGCTATGCAAAAGGAAAT 59.846 34.615 0.00 0.00 43.62 2.17
2706 2918 8.975439 CAGAATGCTATGCAAAAGGAAATAATC 58.025 33.333 0.00 0.00 43.62 1.75
2707 2919 8.921205 AGAATGCTATGCAAAAGGAAATAATCT 58.079 29.630 0.00 0.00 43.62 2.40
2715 2927 8.177119 TGCAAAAGGAAATAATCTAGTTGTGT 57.823 30.769 0.00 0.00 0.00 3.72
2753 2966 3.520623 AAGCTTTGTGGTGCTTCCT 57.479 47.368 0.00 0.00 45.09 3.36
2754 2967 1.035139 AAGCTTTGTGGTGCTTCCTG 58.965 50.000 0.00 0.00 45.09 3.86
2755 2968 1.006922 GCTTTGTGGTGCTTCCTGC 60.007 57.895 0.80 0.00 43.25 4.85
2756 2969 1.458639 GCTTTGTGGTGCTTCCTGCT 61.459 55.000 0.80 0.00 43.37 4.24
2759 2972 0.535780 TTGTGGTGCTTCCTGCTCAG 60.536 55.000 0.80 0.00 43.37 3.35
2776 2989 3.433957 GCTCAGCAGCATATGAGATTCAG 59.566 47.826 13.11 0.00 44.68 3.02
2784 2997 5.046087 CAGCATATGAGATTCAGTGGGGATA 60.046 44.000 6.97 0.00 0.00 2.59
2791 3004 5.887598 TGAGATTCAGTGGGGATAAAACATG 59.112 40.000 0.00 0.00 0.00 3.21
2795 3008 4.331968 TCAGTGGGGATAAAACATGACAC 58.668 43.478 0.00 0.00 0.00 3.67
2796 3009 3.443681 CAGTGGGGATAAAACATGACACC 59.556 47.826 0.00 0.00 0.00 4.16
2797 3010 2.758423 GTGGGGATAAAACATGACACCC 59.242 50.000 0.00 3.31 37.43 4.61
2798 3011 2.652348 TGGGGATAAAACATGACACCCT 59.348 45.455 0.00 0.00 37.78 4.34
2805 3026 6.605594 GGATAAAACATGACACCCTTTATGGA 59.394 38.462 0.00 0.00 38.35 3.41
2806 3027 5.722021 AAAACATGACACCCTTTATGGAC 57.278 39.130 0.00 0.00 38.35 4.02
2816 3037 2.196595 CCTTTATGGACCTGGGTCTGA 58.803 52.381 17.82 7.03 44.04 3.27
2825 3046 3.756963 GGACCTGGGTCTGAAAATTGTAC 59.243 47.826 17.82 0.00 44.04 2.90
2826 3047 4.506802 GGACCTGGGTCTGAAAATTGTACT 60.507 45.833 17.82 0.00 44.04 2.73
2832 3053 4.215613 GGGTCTGAAAATTGTACTGTGGTC 59.784 45.833 0.00 0.00 0.00 4.02
2839 3060 6.770303 TGAAAATTGTACTGTGGTCATTCTCA 59.230 34.615 0.00 0.00 0.00 3.27
2840 3061 6.560253 AAATTGTACTGTGGTCATTCTCAC 57.440 37.500 0.00 0.00 34.71 3.51
2862 3085 5.415389 CACATCAATGTTATGTGGAGGTCAA 59.585 40.000 8.06 0.00 46.78 3.18
2863 3086 6.095860 CACATCAATGTTATGTGGAGGTCAAT 59.904 38.462 8.06 0.00 46.78 2.57
2866 3089 3.364460 TGTTATGTGGAGGTCAATGGG 57.636 47.619 0.00 0.00 0.00 4.00
2874 3097 3.641436 GTGGAGGTCAATGGGAAAACTTT 59.359 43.478 0.00 0.00 0.00 2.66
2876 3099 3.006859 GGAGGTCAATGGGAAAACTTTGG 59.993 47.826 0.00 0.00 0.00 3.28
2877 3100 2.368548 AGGTCAATGGGAAAACTTTGGC 59.631 45.455 0.00 0.00 31.59 4.52
2878 3101 2.549992 GGTCAATGGGAAAACTTTGGCC 60.550 50.000 0.00 0.00 41.19 5.36
2879 3102 1.696884 TCAATGGGAAAACTTTGGCCC 59.303 47.619 0.00 0.00 41.08 5.80
2881 3104 3.567902 TGGGAAAACTTTGGCCCAT 57.432 47.368 0.00 0.00 45.31 4.00
2882 3105 1.813102 TGGGAAAACTTTGGCCCATT 58.187 45.000 0.00 0.00 45.31 3.16
2883 3106 2.131023 TGGGAAAACTTTGGCCCATTT 58.869 42.857 0.00 0.00 45.31 2.32
2885 3108 3.146066 GGGAAAACTTTGGCCCATTTTC 58.854 45.455 16.62 16.62 40.39 2.29
2886 3109 3.434310 GGGAAAACTTTGGCCCATTTTCA 60.434 43.478 22.18 0.00 40.99 2.69
2888 3111 4.455533 GGAAAACTTTGGCCCATTTTCATC 59.544 41.667 22.18 10.07 40.99 2.92
2889 3112 4.703379 AAACTTTGGCCCATTTTCATCA 57.297 36.364 0.00 0.00 0.00 3.07
2891 3114 6.371595 AAACTTTGGCCCATTTTCATCATA 57.628 33.333 0.00 0.00 0.00 2.15
2893 3116 6.165700 ACTTTGGCCCATTTTCATCATATC 57.834 37.500 0.00 0.00 0.00 1.63
2894 3117 5.901276 ACTTTGGCCCATTTTCATCATATCT 59.099 36.000 0.00 0.00 0.00 1.98
2896 3119 4.806892 TGGCCCATTTTCATCATATCTGT 58.193 39.130 0.00 0.00 0.00 3.41
2897 3120 4.828939 TGGCCCATTTTCATCATATCTGTC 59.171 41.667 0.00 0.00 0.00 3.51
2898 3121 4.828939 GGCCCATTTTCATCATATCTGTCA 59.171 41.667 0.00 0.00 0.00 3.58
2899 3122 5.302568 GGCCCATTTTCATCATATCTGTCAA 59.697 40.000 0.00 0.00 0.00 3.18
2900 3123 6.183360 GGCCCATTTTCATCATATCTGTCAAA 60.183 38.462 0.00 0.00 0.00 2.69
2901 3124 7.267128 GCCCATTTTCATCATATCTGTCAAAA 58.733 34.615 0.00 0.00 0.00 2.44
2903 3126 8.472413 CCCATTTTCATCATATCTGTCAAAACT 58.528 33.333 0.00 0.00 0.00 2.66
2908 3131 9.506018 TTTCATCATATCTGTCAAAACTTGAGA 57.494 29.630 0.00 0.00 41.01 3.27
2917 3140 4.462483 TGTCAAAACTTGAGAAAGTTGCCT 59.538 37.500 4.71 0.00 41.76 4.75
2918 3141 5.037385 GTCAAAACTTGAGAAAGTTGCCTC 58.963 41.667 4.71 0.00 41.76 4.70
2920 3143 6.038271 GTCAAAACTTGAGAAAGTTGCCTCTA 59.962 38.462 4.71 0.33 41.76 2.43
2922 3145 6.809630 AAACTTGAGAAAGTTGCCTCTATC 57.190 37.500 4.71 0.00 41.76 2.08
2923 3146 4.499183 ACTTGAGAAAGTTGCCTCTATCG 58.501 43.478 6.97 0.00 0.00 2.92
2924 3147 4.220821 ACTTGAGAAAGTTGCCTCTATCGA 59.779 41.667 0.00 0.00 0.00 3.59
2925 3148 5.105146 ACTTGAGAAAGTTGCCTCTATCGAT 60.105 40.000 2.16 2.16 0.00 3.59
2926 3149 6.096987 ACTTGAGAAAGTTGCCTCTATCGATA 59.903 38.462 4.78 4.78 0.00 2.92
2927 3150 6.656632 TGAGAAAGTTGCCTCTATCGATAT 57.343 37.500 5.40 0.00 0.00 1.63
2929 3152 7.148641 TGAGAAAGTTGCCTCTATCGATATTC 58.851 38.462 5.40 3.80 0.00 1.75
2932 3155 4.815269 AGTTGCCTCTATCGATATTCTGC 58.185 43.478 5.40 7.39 0.00 4.26
2933 3156 4.281941 AGTTGCCTCTATCGATATTCTGCA 59.718 41.667 5.40 9.78 0.00 4.41
2934 3157 4.871933 TGCCTCTATCGATATTCTGCAA 57.128 40.909 5.40 0.00 0.00 4.08
2935 3158 5.213891 TGCCTCTATCGATATTCTGCAAA 57.786 39.130 5.40 0.00 0.00 3.68
2937 3160 4.390297 GCCTCTATCGATATTCTGCAAACC 59.610 45.833 5.40 0.00 0.00 3.27
2938 3161 5.541845 CCTCTATCGATATTCTGCAAACCA 58.458 41.667 5.40 0.00 0.00 3.67
2939 3162 5.406780 CCTCTATCGATATTCTGCAAACCAC 59.593 44.000 5.40 0.00 0.00 4.16
2940 3163 5.297547 TCTATCGATATTCTGCAAACCACC 58.702 41.667 5.40 0.00 0.00 4.61
2944 3167 3.941483 CGATATTCTGCAAACCACCTCTT 59.059 43.478 0.00 0.00 0.00 2.85
2946 3169 5.584649 CGATATTCTGCAAACCACCTCTTTA 59.415 40.000 0.00 0.00 0.00 1.85
2948 3171 5.904362 ATTCTGCAAACCACCTCTTTATC 57.096 39.130 0.00 0.00 0.00 1.75
2949 3172 3.334691 TCTGCAAACCACCTCTTTATCG 58.665 45.455 0.00 0.00 0.00 2.92
2950 3173 1.810151 TGCAAACCACCTCTTTATCGC 59.190 47.619 0.00 0.00 0.00 4.58
2951 3174 1.132453 GCAAACCACCTCTTTATCGCC 59.868 52.381 0.00 0.00 0.00 5.54
2952 3175 1.743394 CAAACCACCTCTTTATCGCCC 59.257 52.381 0.00 0.00 0.00 6.13
2955 3178 1.343681 ACCACCTCTTTATCGCCCCTA 60.344 52.381 0.00 0.00 0.00 3.53
2956 3179 1.766496 CCACCTCTTTATCGCCCCTAA 59.234 52.381 0.00 0.00 0.00 2.69
2960 3183 3.325135 ACCTCTTTATCGCCCCTAATCTG 59.675 47.826 0.00 0.00 0.00 2.90
2961 3184 3.325135 CCTCTTTATCGCCCCTAATCTGT 59.675 47.826 0.00 0.00 0.00 3.41
2965 3188 4.866508 TTATCGCCCCTAATCTGTAGTG 57.133 45.455 0.00 0.00 0.00 2.74
2967 3190 1.754803 TCGCCCCTAATCTGTAGTGTG 59.245 52.381 0.00 0.00 0.00 3.82
2968 3191 1.480954 CGCCCCTAATCTGTAGTGTGT 59.519 52.381 0.00 0.00 0.00 3.72
2969 3192 2.738643 CGCCCCTAATCTGTAGTGTGTG 60.739 54.545 0.00 0.00 0.00 3.82
2970 3193 2.500098 GCCCCTAATCTGTAGTGTGTGA 59.500 50.000 0.00 0.00 0.00 3.58
2971 3194 3.134804 GCCCCTAATCTGTAGTGTGTGAT 59.865 47.826 0.00 0.00 0.00 3.06
2972 3195 4.697514 CCCCTAATCTGTAGTGTGTGATG 58.302 47.826 0.00 0.00 0.00 3.07
2973 3196 4.122776 CCCTAATCTGTAGTGTGTGATGC 58.877 47.826 0.00 0.00 0.00 3.91
2974 3197 4.141846 CCCTAATCTGTAGTGTGTGATGCT 60.142 45.833 0.00 0.00 0.00 3.79
2975 3198 5.423015 CCTAATCTGTAGTGTGTGATGCTT 58.577 41.667 0.00 0.00 0.00 3.91
2976 3199 6.406961 CCCTAATCTGTAGTGTGTGATGCTTA 60.407 42.308 0.00 0.00 0.00 3.09
2977 3200 6.699204 CCTAATCTGTAGTGTGTGATGCTTAG 59.301 42.308 0.00 0.00 0.00 2.18
2978 3201 5.921962 ATCTGTAGTGTGTGATGCTTAGA 57.078 39.130 0.00 0.00 0.00 2.10
2979 3202 5.722021 TCTGTAGTGTGTGATGCTTAGAA 57.278 39.130 0.00 0.00 0.00 2.10
2980 3203 5.714047 TCTGTAGTGTGTGATGCTTAGAAG 58.286 41.667 0.00 0.00 0.00 2.85
2995 3218 5.023551 CTTAGAAGCAAAGGTGTTCGAAG 57.976 43.478 0.00 0.00 30.13 3.79
2996 3219 1.604278 AGAAGCAAAGGTGTTCGAAGC 59.396 47.619 0.00 0.00 0.00 3.86
2997 3220 1.604278 GAAGCAAAGGTGTTCGAAGCT 59.396 47.619 0.00 0.00 0.00 3.74
2998 3221 0.947244 AGCAAAGGTGTTCGAAGCTG 59.053 50.000 0.00 0.00 0.00 4.24
2999 3222 0.663153 GCAAAGGTGTTCGAAGCTGT 59.337 50.000 0.00 0.00 0.00 4.40
3000 3223 1.597937 GCAAAGGTGTTCGAAGCTGTG 60.598 52.381 0.00 0.00 36.22 3.66
3001 3224 1.670811 CAAAGGTGTTCGAAGCTGTGT 59.329 47.619 0.00 0.00 29.84 3.72
3002 3225 2.038387 AAGGTGTTCGAAGCTGTGTT 57.962 45.000 0.00 0.00 0.00 3.32
3003 3226 2.038387 AGGTGTTCGAAGCTGTGTTT 57.962 45.000 0.00 0.00 0.00 2.83
3004 3227 1.670811 AGGTGTTCGAAGCTGTGTTTG 59.329 47.619 0.00 0.00 0.00 2.93
3005 3228 1.268539 GGTGTTCGAAGCTGTGTTTGG 60.269 52.381 0.00 0.00 0.00 3.28
3006 3229 1.400494 GTGTTCGAAGCTGTGTTTGGT 59.600 47.619 0.00 0.00 0.00 3.67
3007 3230 2.088423 TGTTCGAAGCTGTGTTTGGTT 58.912 42.857 0.00 0.00 0.00 3.67
3008 3231 2.159448 TGTTCGAAGCTGTGTTTGGTTG 60.159 45.455 0.00 0.00 0.00 3.77
3009 3232 0.380378 TCGAAGCTGTGTTTGGTTGC 59.620 50.000 0.00 0.00 0.00 4.17
3010 3233 0.381801 CGAAGCTGTGTTTGGTTGCT 59.618 50.000 0.00 0.00 35.30 3.91
3011 3234 1.597937 CGAAGCTGTGTTTGGTTGCTC 60.598 52.381 0.00 0.00 33.10 4.26
3012 3235 1.678101 GAAGCTGTGTTTGGTTGCTCT 59.322 47.619 0.00 0.00 33.10 4.09
3013 3236 1.312815 AGCTGTGTTTGGTTGCTCTC 58.687 50.000 0.00 0.00 0.00 3.20
3014 3237 0.040958 GCTGTGTTTGGTTGCTCTCG 60.041 55.000 0.00 0.00 0.00 4.04
3015 3238 1.581934 CTGTGTTTGGTTGCTCTCGA 58.418 50.000 0.00 0.00 0.00 4.04
3016 3239 1.528586 CTGTGTTTGGTTGCTCTCGAG 59.471 52.381 5.93 5.93 0.00 4.04
3017 3240 1.134521 TGTGTTTGGTTGCTCTCGAGT 60.135 47.619 13.13 0.00 0.00 4.18
3018 3241 1.940613 GTGTTTGGTTGCTCTCGAGTT 59.059 47.619 13.13 0.00 0.00 3.01
3019 3242 2.032808 GTGTTTGGTTGCTCTCGAGTTC 60.033 50.000 13.13 6.05 0.00 3.01
3020 3243 2.158957 TGTTTGGTTGCTCTCGAGTTCT 60.159 45.455 13.13 0.00 0.00 3.01
3051 3274 1.136891 CCTGATGCTGACGGTCATACA 59.863 52.381 11.86 13.19 0.00 2.29
3053 3276 1.134818 TGATGCTGACGGTCATACACC 60.135 52.381 11.86 5.06 42.69 4.16
3065 3289 2.435693 ATACACCAGAGCGGAGGCC 61.436 63.158 0.00 0.00 41.24 5.19
3112 3346 1.003003 GCTTCTGAGGTTGCTCTCCTT 59.997 52.381 0.00 0.00 35.20 3.36
3129 3363 2.434658 CTTTTGCTTTCACGGCCCCC 62.435 60.000 0.00 0.00 0.00 5.40
3246 3480 4.205587 AGCAATCTCATAGCTCTTTTGGG 58.794 43.478 0.00 0.00 32.05 4.12
3247 3481 3.950395 GCAATCTCATAGCTCTTTTGGGT 59.050 43.478 0.00 0.00 0.00 4.51
3248 3482 4.036144 GCAATCTCATAGCTCTTTTGGGTC 59.964 45.833 0.00 0.00 0.00 4.46
3249 3483 3.914426 TCTCATAGCTCTTTTGGGTCC 57.086 47.619 0.00 0.00 0.00 4.46
3250 3484 3.181329 TCTCATAGCTCTTTTGGGTCCA 58.819 45.455 0.00 0.00 0.00 4.02
3251 3485 3.198635 TCTCATAGCTCTTTTGGGTCCAG 59.801 47.826 0.00 0.00 0.00 3.86
3252 3486 2.019984 CATAGCTCTTTTGGGTCCAGC 58.980 52.381 0.00 0.00 0.00 4.85
3253 3487 0.328258 TAGCTCTTTTGGGTCCAGCC 59.672 55.000 0.00 0.00 0.00 4.85
3277 3511 1.001406 CAGGAGAAGAGGCACTTTCGT 59.999 52.381 0.00 0.00 41.55 3.85
3278 3512 1.001406 AGGAGAAGAGGCACTTTCGTG 59.999 52.381 0.00 0.00 41.55 4.35
3279 3513 1.000955 GGAGAAGAGGCACTTTCGTGA 59.999 52.381 0.00 0.00 43.97 4.35
3280 3514 2.548067 GGAGAAGAGGCACTTTCGTGAA 60.548 50.000 0.00 0.00 43.97 3.18
3281 3515 2.734079 GAGAAGAGGCACTTTCGTGAAG 59.266 50.000 0.00 0.81 43.97 3.02
3282 3516 1.801178 GAAGAGGCACTTTCGTGAAGG 59.199 52.381 0.00 0.00 43.97 3.46
3283 3517 0.603975 AGAGGCACTTTCGTGAAGGC 60.604 55.000 0.00 6.35 43.97 4.35
3284 3518 1.578206 GAGGCACTTTCGTGAAGGCC 61.578 60.000 17.26 17.26 44.99 5.19
3285 3519 2.626780 GGCACTTTCGTGAAGGCCC 61.627 63.158 0.00 8.46 43.97 5.80
3286 3520 2.626780 GCACTTTCGTGAAGGCCCC 61.627 63.158 0.00 0.00 43.97 5.80
3287 3521 1.073199 CACTTTCGTGAAGGCCCCT 59.927 57.895 0.00 0.00 43.97 4.79
3288 3522 0.537371 CACTTTCGTGAAGGCCCCTT 60.537 55.000 0.00 0.00 43.97 3.95
3289 3523 0.537371 ACTTTCGTGAAGGCCCCTTG 60.537 55.000 3.91 0.00 39.79 3.61
3399 3646 2.106857 ACTACCACCGGATTGGACAAAA 59.893 45.455 17.59 0.00 42.00 2.44
3416 3663 6.836527 TGGACAAAACCCTATTTTCTTCTCAA 59.163 34.615 0.00 0.00 0.00 3.02
3433 3680 8.273780 TCTTCTCAATATCCAGAAAGAAAAGC 57.726 34.615 0.00 0.00 0.00 3.51
3435 3682 6.725364 TCTCAATATCCAGAAAGAAAAGCCT 58.275 36.000 0.00 0.00 0.00 4.58
3436 3683 7.861629 TCTCAATATCCAGAAAGAAAAGCCTA 58.138 34.615 0.00 0.00 0.00 3.93
3472 3726 7.668525 AGTAAAATGTAAGTACAGGAAGCAC 57.331 36.000 0.00 0.00 39.92 4.40
3483 3737 2.158608 ACAGGAAGCACTGCTAACCTTT 60.159 45.455 20.49 14.75 41.10 3.11
3485 3739 2.887152 AGGAAGCACTGCTAACCTTTTG 59.113 45.455 18.47 0.00 40.55 2.44
3486 3740 2.884639 GGAAGCACTGCTAACCTTTTGA 59.115 45.455 3.33 0.00 38.25 2.69
3487 3741 3.317993 GGAAGCACTGCTAACCTTTTGAA 59.682 43.478 3.33 0.00 38.25 2.69
3489 3743 3.555966 AGCACTGCTAACCTTTTGAACT 58.444 40.909 0.21 0.00 36.99 3.01
3490 3744 3.954258 AGCACTGCTAACCTTTTGAACTT 59.046 39.130 0.21 0.00 36.99 2.66
3491 3745 4.044426 GCACTGCTAACCTTTTGAACTTG 58.956 43.478 0.00 0.00 0.00 3.16
3574 3890 6.867816 TGGTCAACATCATACAAATTTGAAGC 59.132 34.615 24.64 6.64 0.00 3.86
3599 3919 0.109532 TGGACAAGCATTCCACCGAA 59.890 50.000 0.00 0.00 38.28 4.30
3603 3927 0.443869 CAAGCATTCCACCGAACGAG 59.556 55.000 0.00 0.00 0.00 4.18
3613 3937 2.527100 CACCGAACGAGACTATCCAAC 58.473 52.381 0.00 0.00 0.00 3.77
3712 4037 7.120285 CAGAGGCTCTTCATTTCTCAAACAATA 59.880 37.037 15.90 0.00 0.00 1.90
3724 4049 8.635765 TTTCTCAAACAATAATAAGCCTCACT 57.364 30.769 0.00 0.00 0.00 3.41
3726 4051 8.268850 TCTCAAACAATAATAAGCCTCACTTC 57.731 34.615 0.00 0.00 39.97 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 7.114247 CGCTTCGAAATTTGTTCAGGATTTTTA 59.886 33.333 0.00 0.00 0.00 1.52
279 281 9.971922 TTTCAGGATTTTTCAAAATTCTCTCTC 57.028 29.630 3.17 0.00 41.23 3.20
639 650 6.938030 TCTGGTTCTTTTTCGGCTTTCTATTA 59.062 34.615 0.00 0.00 0.00 0.98
748 764 0.737367 CAGCGAGCGACAGAAATGGA 60.737 55.000 0.00 0.00 0.00 3.41
831 848 1.528776 GTCTCGCGGGACCTCCTAT 60.529 63.158 28.82 0.00 35.95 2.57
832 849 2.124403 GTCTCGCGGGACCTCCTA 60.124 66.667 28.82 0.00 35.95 2.94
833 850 3.587170 AAGTCTCGCGGGACCTCCT 62.587 63.158 34.35 14.49 36.95 3.69
834 851 3.066233 GAAGTCTCGCGGGACCTCC 62.066 68.421 34.35 19.88 36.95 4.30
835 852 1.995646 GAGAAGTCTCGCGGGACCTC 61.996 65.000 34.35 30.36 36.95 3.85
836 853 2.035940 AGAAGTCTCGCGGGACCT 59.964 61.111 34.35 23.91 36.95 3.85
837 854 2.490685 GAGAAGTCTCGCGGGACC 59.509 66.667 34.35 20.65 36.95 4.46
845 862 5.865013 CGGACCTTTTTCTTAGAGAAGTCTC 59.135 44.000 0.00 0.00 43.17 3.36
846 863 5.279556 CCGGACCTTTTTCTTAGAGAAGTCT 60.280 44.000 0.00 0.00 35.37 3.24
858 875 0.596577 GTCAAGCCCGGACCTTTTTC 59.403 55.000 0.73 0.00 0.00 2.29
868 887 1.227674 GCCCATAGAGTCAAGCCCG 60.228 63.158 0.00 0.00 0.00 6.13
904 923 1.400530 CGGGGCCTAACTCTACCAGG 61.401 65.000 0.84 0.00 0.00 4.45
905 924 0.686769 ACGGGGCCTAACTCTACCAG 60.687 60.000 0.84 0.00 0.00 4.00
911 930 0.609662 TGTGTAACGGGGCCTAACTC 59.390 55.000 0.84 0.00 42.39 3.01
923 942 2.739671 GGCCCGGACGTGTGTAAC 60.740 66.667 0.73 0.00 37.35 2.50
925 944 2.998480 ATGGCCCGGACGTGTGTA 60.998 61.111 0.73 0.00 0.00 2.90
926 945 4.697756 CATGGCCCGGACGTGTGT 62.698 66.667 0.73 0.00 0.00 3.72
931 950 4.530857 GAGGTCATGGCCCGGACG 62.531 72.222 14.18 0.00 34.87 4.79
932 951 4.530857 CGAGGTCATGGCCCGGAC 62.531 72.222 14.18 13.93 0.00 4.79
934 953 4.530857 GACGAGGTCATGGCCCGG 62.531 72.222 24.61 15.41 32.09 5.73
935 954 4.873129 CGACGAGGTCATGGCCCG 62.873 72.222 21.00 21.00 32.09 6.13
940 965 2.944557 CGACGCGACGAGGTCATG 60.945 66.667 25.89 0.00 32.74 3.07
943 968 4.808238 GGACGACGCGACGAGGTC 62.808 72.222 34.99 22.05 37.03 3.85
959 984 2.227556 GAACGTTTTGATTGCGTACGG 58.772 47.619 18.39 0.00 37.92 4.02
1015 1041 5.966319 AGGCCTTTTATTCTTTTGGATGGAT 59.034 36.000 0.00 0.00 0.00 3.41
1016 1042 5.341169 AGGCCTTTTATTCTTTTGGATGGA 58.659 37.500 0.00 0.00 0.00 3.41
1019 1045 4.402474 CGGAGGCCTTTTATTCTTTTGGAT 59.598 41.667 6.77 0.00 0.00 3.41
1021 1047 3.676049 GCGGAGGCCTTTTATTCTTTTGG 60.676 47.826 6.77 0.00 0.00 3.28
1022 1048 3.056891 TGCGGAGGCCTTTTATTCTTTTG 60.057 43.478 6.77 0.00 38.85 2.44
1030 1056 0.896479 GGGTTTGCGGAGGCCTTTTA 60.896 55.000 6.77 0.00 38.85 1.52
1078 1104 1.381327 TGAGTCGGGGTCCATCTCC 60.381 63.158 0.00 0.00 0.00 3.71
1163 1189 4.147135 GGAGCCCTCCTGGTACAA 57.853 61.111 7.08 0.00 46.16 2.41
1380 1406 2.600470 GGCCAAAGAAACGGGGCT 60.600 61.111 0.00 0.00 45.68 5.19
1413 1439 1.369091 CCGAACATTTGGAGGGAGCG 61.369 60.000 0.00 0.00 33.23 5.03
1447 1473 1.202698 AGGCATCCGATCCAGTAAAGC 60.203 52.381 0.00 0.00 0.00 3.51
1486 1512 5.269505 ACCATTTCAGAACGGAGATCTAG 57.730 43.478 0.00 0.00 37.64 2.43
1528 1554 7.274250 GGAAATCTAACAATTCATTCACAGCAC 59.726 37.037 0.00 0.00 0.00 4.40
1555 1590 6.432936 CACATATTCACATAACATGCCTGAC 58.567 40.000 0.00 0.00 0.00 3.51
1625 1660 2.092212 AGGGCAATAGACATCAACCAGG 60.092 50.000 0.00 0.00 0.00 4.45
1632 1667 5.858381 TCAATCTACAGGGCAATAGACATC 58.142 41.667 0.00 0.00 30.34 3.06
1670 1705 2.360801 GGTGACACTAGATCCTGAGAGC 59.639 54.545 5.39 0.00 0.00 4.09
1714 1749 8.635877 AACTAAGCTCGTGACAAATATAAGAG 57.364 34.615 0.00 0.00 0.00 2.85
1794 1829 3.954999 CGCAGGAAGAAGTACTACTAGC 58.045 50.000 0.00 0.00 0.00 3.42
1830 1865 4.010667 TGAATGGTAAGCGGTAACACTT 57.989 40.909 0.00 0.00 42.73 3.16
1883 1918 1.909302 TCCTGATCCCTCCACAAAGAC 59.091 52.381 0.00 0.00 0.00 3.01
1962 2001 7.595311 AAACAAAGAAAACACCTGATTTGAC 57.405 32.000 2.77 0.00 33.14 3.18
2005 2044 9.793252 GAAGAATAAACATGCACAATAGACATT 57.207 29.630 0.00 0.00 0.00 2.71
2006 2045 9.182214 AGAAGAATAAACATGCACAATAGACAT 57.818 29.630 0.00 0.00 0.00 3.06
2007 2046 8.453320 CAGAAGAATAAACATGCACAATAGACA 58.547 33.333 0.00 0.00 0.00 3.41
2094 2133 9.220767 CAGGGATCAGCTAATAATTTAACTACC 57.779 37.037 0.00 0.00 0.00 3.18
2095 2134 8.722394 GCAGGGATCAGCTAATAATTTAACTAC 58.278 37.037 0.00 0.00 0.00 2.73
2128 2175 2.072298 TGTGCAAAAACACCAACAAGC 58.928 42.857 0.00 0.00 39.93 4.01
2134 2181 1.135257 CCGTTCTGTGCAAAAACACCA 60.135 47.619 0.00 0.00 39.93 4.17
2153 2201 4.694037 CGTAAGGGGTAAATAATAGCTGCC 59.306 45.833 0.00 0.00 0.00 4.85
2174 2222 9.880157 ATATGACATAAGTACTGTTTTAACCGT 57.120 29.630 0.00 0.00 0.00 4.83
2210 2258 6.992715 AGATGCCAAGTTATTCTGTATACACC 59.007 38.462 0.08 0.00 0.00 4.16
2214 2262 9.368416 ACTAGAGATGCCAAGTTATTCTGTATA 57.632 33.333 0.00 0.00 0.00 1.47
2216 2264 7.661536 ACTAGAGATGCCAAGTTATTCTGTA 57.338 36.000 0.00 0.00 0.00 2.74
2220 2268 6.418226 CGTGTACTAGAGATGCCAAGTTATTC 59.582 42.308 0.00 0.00 0.00 1.75
2225 2273 2.159226 GCGTGTACTAGAGATGCCAAGT 60.159 50.000 0.00 0.00 0.00 3.16
2226 2274 2.159240 TGCGTGTACTAGAGATGCCAAG 60.159 50.000 0.00 0.00 32.26 3.61
2227 2275 1.822371 TGCGTGTACTAGAGATGCCAA 59.178 47.619 0.00 0.00 32.26 4.52
2230 2278 3.971150 AGAATGCGTGTACTAGAGATGC 58.029 45.455 0.00 0.00 33.89 3.91
2231 2279 9.678941 TTTATAAGAATGCGTGTACTAGAGATG 57.321 33.333 0.00 0.00 0.00 2.90
2232 2280 9.900710 CTTTATAAGAATGCGTGTACTAGAGAT 57.099 33.333 0.00 0.00 0.00 2.75
2244 2292 6.912591 GGTTTGATCCACTTTATAAGAATGCG 59.087 38.462 0.00 0.00 0.00 4.73
2258 2306 3.222603 ACAGGAGTTTGGTTTGATCCAC 58.777 45.455 0.00 0.00 37.20 4.02
2266 2314 5.869649 AAGCAAATTACAGGAGTTTGGTT 57.130 34.783 11.30 11.30 44.14 3.67
2268 2316 5.691754 GTGAAAGCAAATTACAGGAGTTTGG 59.308 40.000 2.95 0.00 34.34 3.28
2273 2321 5.860182 CACATGTGAAAGCAAATTACAGGAG 59.140 40.000 21.64 0.00 0.00 3.69
2276 2324 4.983538 TGCACATGTGAAAGCAAATTACAG 59.016 37.500 29.80 0.00 33.48 2.74
2278 2326 5.163933 CCATGCACATGTGAAAGCAAATTAC 60.164 40.000 29.80 7.34 40.76 1.89
2280 2328 3.749088 CCATGCACATGTGAAAGCAAATT 59.251 39.130 29.80 0.00 40.76 1.82
2284 2332 0.038067 GCCATGCACATGTGAAAGCA 60.038 50.000 29.80 19.74 41.73 3.91
2285 2333 0.038067 TGCCATGCACATGTGAAAGC 60.038 50.000 29.80 24.38 37.11 3.51
2287 2335 1.962100 TCTTGCCATGCACATGTGAAA 59.038 42.857 29.80 16.49 38.71 2.69
2288 2336 1.618487 TCTTGCCATGCACATGTGAA 58.382 45.000 29.80 20.74 38.71 3.18
2289 2337 1.618487 TTCTTGCCATGCACATGTGA 58.382 45.000 29.80 14.54 38.71 3.58
2290 2338 2.063266 GTTTCTTGCCATGCACATGTG 58.937 47.619 21.83 21.83 38.71 3.21
2291 2339 1.687660 TGTTTCTTGCCATGCACATGT 59.312 42.857 9.63 0.00 38.71 3.21
2292 2340 2.063266 GTGTTTCTTGCCATGCACATG 58.937 47.619 3.56 3.56 38.71 3.21
2293 2341 1.687660 TGTGTTTCTTGCCATGCACAT 59.312 42.857 0.00 0.00 38.71 3.21
2294 2342 1.109609 TGTGTTTCTTGCCATGCACA 58.890 45.000 0.00 0.00 38.71 4.57
2295 2343 2.222007 TTGTGTTTCTTGCCATGCAC 57.778 45.000 0.00 0.00 38.71 4.57
2296 2344 3.305950 GGTATTGTGTTTCTTGCCATGCA 60.306 43.478 0.00 0.00 36.47 3.96
2297 2345 3.253230 GGTATTGTGTTTCTTGCCATGC 58.747 45.455 0.00 0.00 0.00 4.06
2298 2346 4.517952 TGGTATTGTGTTTCTTGCCATG 57.482 40.909 0.00 0.00 0.00 3.66
2299 2347 5.743636 AATGGTATTGTGTTTCTTGCCAT 57.256 34.783 0.00 0.00 37.10 4.40
2300 2348 5.772672 ACTAATGGTATTGTGTTTCTTGCCA 59.227 36.000 0.00 0.00 0.00 4.92
2301 2349 6.267496 ACTAATGGTATTGTGTTTCTTGCC 57.733 37.500 0.00 0.00 0.00 4.52
2302 2350 7.145323 ACAACTAATGGTATTGTGTTTCTTGC 58.855 34.615 0.00 0.00 35.28 4.01
2305 2353 8.458843 GCATACAACTAATGGTATTGTGTTTCT 58.541 33.333 0.00 0.00 37.17 2.52
2306 2354 8.240682 TGCATACAACTAATGGTATTGTGTTTC 58.759 33.333 0.00 0.00 37.17 2.78
2307 2355 8.116651 TGCATACAACTAATGGTATTGTGTTT 57.883 30.769 0.00 0.00 37.17 2.83
2308 2356 7.695480 TGCATACAACTAATGGTATTGTGTT 57.305 32.000 0.00 0.00 37.17 3.32
2309 2357 7.880160 ATGCATACAACTAATGGTATTGTGT 57.120 32.000 0.00 0.00 37.17 3.72
2310 2358 9.022915 CAAATGCATACAACTAATGGTATTGTG 57.977 33.333 0.00 0.00 37.17 3.33
2311 2359 7.706179 GCAAATGCATACAACTAATGGTATTGT 59.294 33.333 0.00 0.00 41.59 2.71
2312 2360 7.169645 GGCAAATGCATACAACTAATGGTATTG 59.830 37.037 0.00 0.00 44.36 1.90
2313 2361 7.147759 TGGCAAATGCATACAACTAATGGTATT 60.148 33.333 0.00 0.00 44.36 1.89
2314 2362 6.323482 TGGCAAATGCATACAACTAATGGTAT 59.677 34.615 0.00 0.00 44.36 2.73
2315 2363 5.654209 TGGCAAATGCATACAACTAATGGTA 59.346 36.000 0.00 0.00 44.36 3.25
2316 2364 4.465660 TGGCAAATGCATACAACTAATGGT 59.534 37.500 0.00 0.00 44.36 3.55
2317 2365 5.008619 TGGCAAATGCATACAACTAATGG 57.991 39.130 0.00 0.00 44.36 3.16
2318 2366 8.705134 CATTATGGCAAATGCATACAACTAATG 58.295 33.333 0.00 6.54 44.36 1.90
2319 2367 7.874016 CCATTATGGCAAATGCATACAACTAAT 59.126 33.333 0.00 0.00 44.36 1.73
2320 2368 7.147759 ACCATTATGGCAAATGCATACAACTAA 60.148 33.333 11.72 0.00 42.67 2.24
2321 2369 6.323482 ACCATTATGGCAAATGCATACAACTA 59.677 34.615 11.72 0.00 42.67 2.24
2322 2370 5.129155 ACCATTATGGCAAATGCATACAACT 59.871 36.000 11.72 0.00 42.67 3.16
2323 2371 5.358922 ACCATTATGGCAAATGCATACAAC 58.641 37.500 11.72 0.00 42.67 3.32
2324 2372 5.611128 ACCATTATGGCAAATGCATACAA 57.389 34.783 11.72 0.00 42.67 2.41
2325 2373 5.105023 ACAACCATTATGGCAAATGCATACA 60.105 36.000 11.72 0.00 42.67 2.29
2326 2374 5.234757 CACAACCATTATGGCAAATGCATAC 59.765 40.000 11.72 0.00 42.67 2.39
2327 2375 5.358090 CACAACCATTATGGCAAATGCATA 58.642 37.500 11.72 1.27 42.67 3.14
2328 2376 4.193090 CACAACCATTATGGCAAATGCAT 58.807 39.130 11.72 0.00 42.67 3.96
2329 2377 3.597255 CACAACCATTATGGCAAATGCA 58.403 40.909 11.72 0.00 42.67 3.96
2330 2378 2.937799 CCACAACCATTATGGCAAATGC 59.062 45.455 11.72 0.00 42.67 3.56
2331 2379 4.205065 ACCACAACCATTATGGCAAATG 57.795 40.909 11.72 8.09 42.67 2.32
2332 2380 4.906747 AACCACAACCATTATGGCAAAT 57.093 36.364 11.72 0.00 42.67 2.32
2340 2388 6.909550 ATTTAGCTCAAACCACAACCATTA 57.090 33.333 0.00 0.00 0.00 1.90
2345 2393 7.158099 AGGAATATTTAGCTCAAACCACAAC 57.842 36.000 0.00 0.00 0.00 3.32
2349 2397 7.092623 TGGTCTAGGAATATTTAGCTCAAACCA 60.093 37.037 0.00 0.00 0.00 3.67
2354 2402 7.618019 ATGTGGTCTAGGAATATTTAGCTCA 57.382 36.000 0.00 0.00 0.00 4.26
2373 2421 4.092529 CAGAAGATGAGACAACGAATGTGG 59.907 45.833 3.45 0.00 44.12 4.17
2377 2425 6.634805 ACATACAGAAGATGAGACAACGAAT 58.365 36.000 0.00 0.00 0.00 3.34
2379 2427 5.644977 ACATACAGAAGATGAGACAACGA 57.355 39.130 0.00 0.00 0.00 3.85
2420 2468 8.803235 TGAAAGAATACACGGAGTAGCATATAT 58.197 33.333 0.00 0.00 41.61 0.86
2421 2469 8.173542 TGAAAGAATACACGGAGTAGCATATA 57.826 34.615 0.00 0.00 41.61 0.86
2423 2471 6.459670 TGAAAGAATACACGGAGTAGCATA 57.540 37.500 0.00 0.00 41.61 3.14
2453 2501 5.480422 ACTGTCTGACTGTCATACCATAACA 59.520 40.000 19.59 10.96 0.00 2.41
2454 2502 5.807520 CACTGTCTGACTGTCATACCATAAC 59.192 44.000 19.59 7.83 0.00 1.89
2457 2505 3.834813 ACACTGTCTGACTGTCATACCAT 59.165 43.478 19.59 8.23 0.00 3.55
2464 2512 1.863454 CAAGCACACTGTCTGACTGTC 59.137 52.381 16.17 0.00 0.00 3.51
2468 2516 1.003116 CAAGCAAGCACACTGTCTGAC 60.003 52.381 0.00 0.00 0.00 3.51
2470 2518 1.019673 ACAAGCAAGCACACTGTCTG 58.980 50.000 0.00 0.00 0.00 3.51
2471 2519 1.402968 CAACAAGCAAGCACACTGTCT 59.597 47.619 0.00 0.00 0.00 3.41
2476 2524 2.008752 AAACCAACAAGCAAGCACAC 57.991 45.000 0.00 0.00 0.00 3.82
2493 2542 2.722094 ACAACTGCCAGAGACACAAAA 58.278 42.857 0.00 0.00 0.00 2.44
2510 2559 9.650539 CATGGATCATGGTAAAATACAAAACAA 57.349 29.630 0.00 0.00 38.11 2.83
2542 2591 6.668090 GCATCAGCAACGAATGTGTAAAAATG 60.668 38.462 0.00 0.00 41.58 2.32
2545 2594 4.225984 GCATCAGCAACGAATGTGTAAAA 58.774 39.130 0.00 0.00 41.58 1.52
2546 2595 3.820689 GCATCAGCAACGAATGTGTAAA 58.179 40.909 0.00 0.00 41.58 2.01
2547 2596 3.469899 GCATCAGCAACGAATGTGTAA 57.530 42.857 0.00 0.00 41.58 2.41
2559 2608 1.003928 AGTGGAACATCTGCATCAGCA 59.996 47.619 0.00 0.00 46.75 4.41
2561 2610 3.340928 TCAAGTGGAACATCTGCATCAG 58.659 45.455 0.00 0.00 44.52 2.90
2653 2865 0.107897 TGACGAAGCACAACCACTGT 60.108 50.000 0.00 0.00 39.56 3.55
2657 2869 1.960417 TCAATGACGAAGCACAACCA 58.040 45.000 0.00 0.00 0.00 3.67
2661 2873 2.802247 CTGTCTTCAATGACGAAGCACA 59.198 45.455 0.00 0.00 41.84 4.57
2669 2881 5.065602 TGCATAGCATTCTGTCTTCAATGAC 59.934 40.000 0.00 0.00 32.56 3.06
2670 2882 5.187687 TGCATAGCATTCTGTCTTCAATGA 58.812 37.500 0.00 0.00 32.56 2.57
2674 2886 5.106038 CCTTTTGCATAGCATTCTGTCTTCA 60.106 40.000 0.00 0.00 38.76 3.02
2689 2901 8.806146 ACACAACTAGATTATTTCCTTTTGCAT 58.194 29.630 0.00 0.00 0.00 3.96
2726 2938 3.125316 CACCACAAAGCTTTCACCATTG 58.875 45.455 9.23 0.00 0.00 2.82
2727 2939 2.483538 GCACCACAAAGCTTTCACCATT 60.484 45.455 9.23 0.00 0.00 3.16
2737 2949 1.006922 GCAGGAAGCACCACAAAGC 60.007 57.895 2.96 0.00 44.79 3.51
2754 2967 3.400255 TGAATCTCATATGCTGCTGAGC 58.600 45.455 11.34 0.00 46.44 4.26
2755 2968 4.449405 CACTGAATCTCATATGCTGCTGAG 59.551 45.833 10.23 10.23 40.20 3.35
2756 2969 4.377897 CACTGAATCTCATATGCTGCTGA 58.622 43.478 0.00 0.00 0.00 4.26
2759 2972 2.812591 CCCACTGAATCTCATATGCTGC 59.187 50.000 0.00 0.00 0.00 5.25
2764 2977 7.815383 TGTTTTATCCCCACTGAATCTCATAT 58.185 34.615 0.00 0.00 0.00 1.78
2773 2986 4.331968 GTGTCATGTTTTATCCCCACTGA 58.668 43.478 0.00 0.00 0.00 3.41
2776 2989 2.758423 GGGTGTCATGTTTTATCCCCAC 59.242 50.000 0.00 0.00 0.00 4.61
2784 2997 4.526650 GGTCCATAAAGGGTGTCATGTTTT 59.473 41.667 0.00 0.00 38.24 2.43
2791 3004 1.064685 CCCAGGTCCATAAAGGGTGTC 60.065 57.143 0.00 0.00 38.24 3.67
2795 3008 1.212935 CAGACCCAGGTCCATAAAGGG 59.787 57.143 13.27 0.00 45.59 3.95
2796 3009 2.196595 TCAGACCCAGGTCCATAAAGG 58.803 52.381 13.27 0.00 45.59 3.11
2797 3010 4.301072 TTTCAGACCCAGGTCCATAAAG 57.699 45.455 13.27 0.00 45.59 1.85
2798 3011 4.733077 TTTTCAGACCCAGGTCCATAAA 57.267 40.909 13.27 8.59 45.59 1.40
2805 3026 4.141251 ACAGTACAATTTTCAGACCCAGGT 60.141 41.667 0.00 0.00 0.00 4.00
2806 3027 4.216257 CACAGTACAATTTTCAGACCCAGG 59.784 45.833 0.00 0.00 0.00 4.45
2816 3037 6.545666 TGTGAGAATGACCACAGTACAATTTT 59.454 34.615 0.00 0.00 38.26 1.82
2825 3046 4.698780 ACATTGATGTGAGAATGACCACAG 59.301 41.667 0.00 0.00 45.13 3.66
2826 3047 4.654915 ACATTGATGTGAGAATGACCACA 58.345 39.130 0.00 0.00 45.85 4.17
2839 3060 5.178096 TGACCTCCACATAACATTGATGT 57.822 39.130 0.00 0.00 44.20 3.06
2840 3061 6.460537 CCATTGACCTCCACATAACATTGATG 60.461 42.308 0.00 0.00 0.00 3.07
2862 3085 3.567902 TGGGCCAAAGTTTTCCCAT 57.432 47.368 17.39 0.00 43.40 4.00
2866 3089 5.062528 TGATGAAAATGGGCCAAAGTTTTC 58.937 37.500 26.12 26.12 39.67 2.29
2874 3097 4.806892 ACAGATATGATGAAAATGGGCCA 58.193 39.130 9.61 9.61 0.00 5.36
2876 3099 6.395426 TTGACAGATATGATGAAAATGGGC 57.605 37.500 0.00 0.00 0.00 5.36
2877 3100 8.472413 AGTTTTGACAGATATGATGAAAATGGG 58.528 33.333 0.00 0.00 0.00 4.00
2878 3101 9.865321 AAGTTTTGACAGATATGATGAAAATGG 57.135 29.630 0.00 0.00 0.00 3.16
2882 3105 9.506018 TCTCAAGTTTTGACAGATATGATGAAA 57.494 29.630 0.00 0.00 35.46 2.69
2883 3106 9.506018 TTCTCAAGTTTTGACAGATATGATGAA 57.494 29.630 0.00 0.00 35.46 2.57
2885 3108 9.770503 CTTTCTCAAGTTTTGACAGATATGATG 57.229 33.333 0.00 0.00 35.46 3.07
2886 3109 9.512588 ACTTTCTCAAGTTTTGACAGATATGAT 57.487 29.630 0.00 0.00 40.66 2.45
2918 3141 5.300752 AGGTGGTTTGCAGAATATCGATAG 58.699 41.667 11.41 0.00 0.00 2.08
2920 3143 4.130118 GAGGTGGTTTGCAGAATATCGAT 58.870 43.478 2.16 2.16 0.00 3.59
2922 3145 3.535561 AGAGGTGGTTTGCAGAATATCG 58.464 45.455 0.00 0.00 0.00 2.92
2923 3146 5.904362 AAAGAGGTGGTTTGCAGAATATC 57.096 39.130 0.00 0.00 0.00 1.63
2924 3147 6.260936 CGATAAAGAGGTGGTTTGCAGAATAT 59.739 38.462 0.00 0.00 0.00 1.28
2925 3148 5.584649 CGATAAAGAGGTGGTTTGCAGAATA 59.415 40.000 0.00 0.00 0.00 1.75
2926 3149 4.396166 CGATAAAGAGGTGGTTTGCAGAAT 59.604 41.667 0.00 0.00 0.00 2.40
2927 3150 3.751175 CGATAAAGAGGTGGTTTGCAGAA 59.249 43.478 0.00 0.00 0.00 3.02
2929 3152 2.159517 GCGATAAAGAGGTGGTTTGCAG 60.160 50.000 0.00 0.00 0.00 4.41
2932 3155 1.743394 GGGCGATAAAGAGGTGGTTTG 59.257 52.381 0.00 0.00 0.00 2.93
2933 3156 1.340697 GGGGCGATAAAGAGGTGGTTT 60.341 52.381 0.00 0.00 0.00 3.27
2934 3157 0.255033 GGGGCGATAAAGAGGTGGTT 59.745 55.000 0.00 0.00 0.00 3.67
2935 3158 0.620700 AGGGGCGATAAAGAGGTGGT 60.621 55.000 0.00 0.00 0.00 4.16
2937 3160 3.325135 AGATTAGGGGCGATAAAGAGGTG 59.675 47.826 0.00 0.00 0.00 4.00
2938 3161 3.325135 CAGATTAGGGGCGATAAAGAGGT 59.675 47.826 0.00 0.00 0.00 3.85
2939 3162 3.325135 ACAGATTAGGGGCGATAAAGAGG 59.675 47.826 0.00 0.00 0.00 3.69
2940 3163 4.608948 ACAGATTAGGGGCGATAAAGAG 57.391 45.455 0.00 0.00 0.00 2.85
2944 3167 4.038763 CACACTACAGATTAGGGGCGATAA 59.961 45.833 0.00 0.00 0.00 1.75
2946 3169 2.365617 CACACTACAGATTAGGGGCGAT 59.634 50.000 0.00 0.00 0.00 4.58
2948 3171 1.480954 ACACACTACAGATTAGGGGCG 59.519 52.381 0.00 0.00 0.00 6.13
2949 3172 2.500098 TCACACACTACAGATTAGGGGC 59.500 50.000 0.00 0.00 0.00 5.80
2950 3173 4.697514 CATCACACACTACAGATTAGGGG 58.302 47.826 0.00 0.00 0.00 4.79
2951 3174 4.122776 GCATCACACACTACAGATTAGGG 58.877 47.826 0.00 0.00 0.00 3.53
2952 3175 5.016051 AGCATCACACACTACAGATTAGG 57.984 43.478 0.00 0.00 0.00 2.69
2955 3178 6.286240 TCTAAGCATCACACACTACAGATT 57.714 37.500 0.00 0.00 0.00 2.40
2956 3179 5.921962 TCTAAGCATCACACACTACAGAT 57.078 39.130 0.00 0.00 0.00 2.90
2973 3196 4.611581 GCTTCGAACACCTTTGCTTCTAAG 60.612 45.833 0.00 0.00 0.00 2.18
2974 3197 3.250040 GCTTCGAACACCTTTGCTTCTAA 59.750 43.478 0.00 0.00 0.00 2.10
2975 3198 2.806244 GCTTCGAACACCTTTGCTTCTA 59.194 45.455 0.00 0.00 0.00 2.10
2976 3199 1.604278 GCTTCGAACACCTTTGCTTCT 59.396 47.619 0.00 0.00 0.00 2.85
2977 3200 1.604278 AGCTTCGAACACCTTTGCTTC 59.396 47.619 0.00 0.00 0.00 3.86
2978 3201 1.334869 CAGCTTCGAACACCTTTGCTT 59.665 47.619 3.34 0.00 0.00 3.91
2979 3202 0.947244 CAGCTTCGAACACCTTTGCT 59.053 50.000 0.00 0.00 0.00 3.91
2980 3203 0.663153 ACAGCTTCGAACACCTTTGC 59.337 50.000 0.00 0.00 0.00 3.68
2981 3204 1.670811 ACACAGCTTCGAACACCTTTG 59.329 47.619 0.00 0.00 0.00 2.77
2982 3205 2.038387 ACACAGCTTCGAACACCTTT 57.962 45.000 0.00 0.00 0.00 3.11
2983 3206 2.038387 AACACAGCTTCGAACACCTT 57.962 45.000 0.00 0.00 0.00 3.50
2984 3207 1.670811 CAAACACAGCTTCGAACACCT 59.329 47.619 0.00 0.00 0.00 4.00
2985 3208 1.268539 CCAAACACAGCTTCGAACACC 60.269 52.381 0.00 0.00 0.00 4.16
2986 3209 1.400494 ACCAAACACAGCTTCGAACAC 59.600 47.619 0.00 0.00 0.00 3.32
2987 3210 1.745232 ACCAAACACAGCTTCGAACA 58.255 45.000 0.00 0.00 0.00 3.18
2988 3211 2.450160 CAACCAAACACAGCTTCGAAC 58.550 47.619 0.00 0.00 0.00 3.95
2989 3212 1.202245 GCAACCAAACACAGCTTCGAA 60.202 47.619 0.00 0.00 0.00 3.71
2990 3213 0.380378 GCAACCAAACACAGCTTCGA 59.620 50.000 0.00 0.00 0.00 3.71
2991 3214 0.381801 AGCAACCAAACACAGCTTCG 59.618 50.000 0.00 0.00 29.98 3.79
2992 3215 1.678101 AGAGCAACCAAACACAGCTTC 59.322 47.619 0.00 0.00 35.36 3.86
2993 3216 1.678101 GAGAGCAACCAAACACAGCTT 59.322 47.619 0.00 0.00 35.36 3.74
2994 3217 1.312815 GAGAGCAACCAAACACAGCT 58.687 50.000 0.00 0.00 38.43 4.24
2995 3218 0.040958 CGAGAGCAACCAAACACAGC 60.041 55.000 0.00 0.00 0.00 4.40
2996 3219 1.528586 CTCGAGAGCAACCAAACACAG 59.471 52.381 6.58 0.00 0.00 3.66
2997 3220 1.134521 ACTCGAGAGCAACCAAACACA 60.135 47.619 21.68 0.00 0.00 3.72
2998 3221 1.583054 ACTCGAGAGCAACCAAACAC 58.417 50.000 21.68 0.00 0.00 3.32
2999 3222 2.158957 AGAACTCGAGAGCAACCAAACA 60.159 45.455 21.68 0.00 0.00 2.83
3000 3223 2.484889 AGAACTCGAGAGCAACCAAAC 58.515 47.619 21.68 0.00 0.00 2.93
3001 3224 2.872245 CAAGAACTCGAGAGCAACCAAA 59.128 45.455 21.68 0.00 0.00 3.28
3002 3225 2.158957 ACAAGAACTCGAGAGCAACCAA 60.159 45.455 21.68 0.00 0.00 3.67
3003 3226 1.412710 ACAAGAACTCGAGAGCAACCA 59.587 47.619 21.68 0.00 0.00 3.67
3004 3227 1.795286 CACAAGAACTCGAGAGCAACC 59.205 52.381 21.68 1.13 0.00 3.77
3005 3228 1.193426 GCACAAGAACTCGAGAGCAAC 59.807 52.381 21.68 5.30 0.00 4.17
3006 3229 1.069204 AGCACAAGAACTCGAGAGCAA 59.931 47.619 21.68 0.00 0.00 3.91
3007 3230 0.676184 AGCACAAGAACTCGAGAGCA 59.324 50.000 21.68 0.00 0.00 4.26
3008 3231 1.345410 GAGCACAAGAACTCGAGAGC 58.655 55.000 21.68 10.31 0.00 4.09
3009 3232 1.543802 AGGAGCACAAGAACTCGAGAG 59.456 52.381 21.68 5.78 33.55 3.20
3010 3233 1.542030 GAGGAGCACAAGAACTCGAGA 59.458 52.381 21.68 0.00 33.55 4.04
3011 3234 1.403514 GGAGGAGCACAAGAACTCGAG 60.404 57.143 11.84 11.84 33.55 4.04
3012 3235 0.603569 GGAGGAGCACAAGAACTCGA 59.396 55.000 0.00 0.00 33.55 4.04
3013 3236 0.390472 GGGAGGAGCACAAGAACTCG 60.390 60.000 0.00 0.00 33.55 4.18
3014 3237 0.980423 AGGGAGGAGCACAAGAACTC 59.020 55.000 0.00 0.00 0.00 3.01
3015 3238 0.689623 CAGGGAGGAGCACAAGAACT 59.310 55.000 0.00 0.00 0.00 3.01
3016 3239 0.687354 TCAGGGAGGAGCACAAGAAC 59.313 55.000 0.00 0.00 0.00 3.01
3017 3240 1.280133 CATCAGGGAGGAGCACAAGAA 59.720 52.381 0.00 0.00 0.00 2.52
3018 3241 0.907486 CATCAGGGAGGAGCACAAGA 59.093 55.000 0.00 0.00 0.00 3.02
3019 3242 0.747283 GCATCAGGGAGGAGCACAAG 60.747 60.000 0.00 0.00 0.00 3.16
3020 3243 1.203441 AGCATCAGGGAGGAGCACAA 61.203 55.000 0.00 0.00 0.00 3.33
3072 3296 0.957362 AAAGTTCAGCCAGCTCTTGC 59.043 50.000 0.00 0.00 40.05 4.01
3073 3297 1.335689 GCAAAGTTCAGCCAGCTCTTG 60.336 52.381 0.00 0.00 0.00 3.02
3112 3346 2.915137 GGGGGCCGTGAAAGCAAA 60.915 61.111 0.00 0.00 0.00 3.68
3129 3363 0.663568 GTGAGGTCAGGTCGAACGTG 60.664 60.000 0.00 0.00 35.97 4.49
3132 3366 1.499049 GTTGTGAGGTCAGGTCGAAC 58.501 55.000 0.00 0.00 0.00 3.95
3246 3480 2.232298 CTTCTCCTGGACGGCTGGAC 62.232 65.000 0.00 0.00 0.00 4.02
3247 3481 1.984570 CTTCTCCTGGACGGCTGGA 60.985 63.158 0.00 3.68 0.00 3.86
3248 3482 1.954362 CTCTTCTCCTGGACGGCTGG 61.954 65.000 0.00 0.00 0.00 4.85
3249 3483 1.515020 CTCTTCTCCTGGACGGCTG 59.485 63.158 0.00 0.00 0.00 4.85
3250 3484 1.684049 CCTCTTCTCCTGGACGGCT 60.684 63.158 0.00 0.00 0.00 5.52
3251 3485 2.896443 CCTCTTCTCCTGGACGGC 59.104 66.667 0.00 0.00 0.00 5.68
3252 3486 1.984570 TGCCTCTTCTCCTGGACGG 60.985 63.158 0.00 0.00 0.00 4.79
3253 3487 1.216710 GTGCCTCTTCTCCTGGACG 59.783 63.158 0.00 0.00 0.00 4.79
3277 3511 0.251608 GGCTTAACAAGGGGCCTTCA 60.252 55.000 0.84 0.00 41.20 3.02
3278 3512 2.579878 GGCTTAACAAGGGGCCTTC 58.420 57.895 0.84 0.00 41.20 3.46
3279 3513 4.865629 GGCTTAACAAGGGGCCTT 57.134 55.556 0.84 0.00 41.20 4.35
3281 3515 1.888436 GCAAGGCTTAACAAGGGGCC 61.888 60.000 0.00 0.00 44.38 5.80
3282 3516 0.900182 AGCAAGGCTTAACAAGGGGC 60.900 55.000 0.00 0.00 33.89 5.80
3283 3517 2.369394 CTAGCAAGGCTTAACAAGGGG 58.631 52.381 0.00 0.00 40.44 4.79
3284 3518 1.745653 GCTAGCAAGGCTTAACAAGGG 59.254 52.381 10.63 0.00 40.44 3.95
3285 3519 2.680339 GAGCTAGCAAGGCTTAACAAGG 59.320 50.000 18.83 0.00 40.44 3.61
3286 3520 3.338249 TGAGCTAGCAAGGCTTAACAAG 58.662 45.455 18.83 0.00 40.44 3.16
3287 3521 3.338249 CTGAGCTAGCAAGGCTTAACAA 58.662 45.455 18.83 0.00 40.44 2.83
3288 3522 2.355108 CCTGAGCTAGCAAGGCTTAACA 60.355 50.000 18.83 2.11 40.44 2.41
3289 3523 2.284190 CCTGAGCTAGCAAGGCTTAAC 58.716 52.381 18.83 0.00 40.44 2.01
3399 3646 8.337118 TCTGGATATTGAGAAGAAAATAGGGT 57.663 34.615 0.00 0.00 0.00 4.34
3420 3667 9.358872 GTATGAATTTTAGGCTTTTCTTTCTGG 57.641 33.333 0.00 0.00 0.00 3.86
3451 3704 5.048713 GCAGTGCTTCCTGTACTTACATTTT 60.049 40.000 8.18 0.00 39.61 1.82
3456 3709 3.320673 AGCAGTGCTTCCTGTACTTAC 57.679 47.619 13.14 0.00 39.61 2.34
3472 3726 4.338118 TGTCCAAGTTCAAAAGGTTAGCAG 59.662 41.667 0.00 0.00 0.00 4.24
3570 3886 8.759267 GTGGAATGCTTGTCCATGTAAGCTTC 62.759 46.154 20.29 18.89 46.67 3.86
3574 3890 3.129287 GGTGGAATGCTTGTCCATGTAAG 59.871 47.826 6.82 0.00 46.67 2.34
3599 3919 1.135083 CCGCAAGTTGGATAGTCTCGT 60.135 52.381 4.75 0.00 0.00 4.18
3603 3927 0.392461 TGGCCGCAAGTTGGATAGTC 60.392 55.000 4.75 0.00 0.00 2.59
3712 4037 6.151144 GGTGTAATTGTGAAGTGAGGCTTATT 59.849 38.462 0.00 0.00 37.59 1.40
3724 4049 5.316167 AGAATGCTCTGGTGTAATTGTGAA 58.684 37.500 0.00 0.00 0.00 3.18
3726 4051 5.392380 GGAAGAATGCTCTGGTGTAATTGTG 60.392 44.000 0.00 0.00 30.03 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.