Multiple sequence alignment - TraesCS5A01G287100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G287100 chr5A 100.000 3639 0 0 1 3639 495029938 495026300 0.000000e+00 6721.0
1 TraesCS5A01G287100 chr5A 92.971 939 52 8 2712 3637 52005138 52004201 0.000000e+00 1356.0
2 TraesCS5A01G287100 chr5A 92.683 943 43 11 2711 3637 470766053 470765121 0.000000e+00 1336.0
3 TraesCS5A01G287100 chr5A 92.000 50 3 1 2591 2639 415229717 415229668 6.520000e-08 69.4
4 TraesCS5A01G287100 chr6A 95.182 934 32 9 2712 3637 585582150 585581222 0.000000e+00 1463.0
5 TraesCS5A01G287100 chr1A 93.460 948 36 11 2712 3637 41908053 41908996 0.000000e+00 1384.0
6 TraesCS5A01G287100 chr2A 93.368 950 35 11 2712 3637 752288038 752288983 0.000000e+00 1380.0
7 TraesCS5A01G287100 chr2A 93.128 844 39 9 2806 3637 460335613 460334777 0.000000e+00 1219.0
8 TraesCS5A01G287100 chr2A 92.565 807 42 11 2843 3637 751527838 751528638 0.000000e+00 1142.0
9 TraesCS5A01G287100 chr2A 92.516 775 47 7 132 900 608261418 608262187 0.000000e+00 1099.0
10 TraesCS5A01G287100 chr7A 93.045 949 42 7 2712 3637 38539185 38540132 0.000000e+00 1365.0
11 TraesCS5A01G287100 chr7A 93.220 944 36 13 2712 3637 734280282 734279349 0.000000e+00 1363.0
12 TraesCS5A01G287100 chr7A 92.124 838 42 10 2712 3527 696203474 696204309 0.000000e+00 1160.0
13 TraesCS5A01G287100 chr7A 89.037 903 89 7 1 900 518521588 518520693 0.000000e+00 1110.0
14 TraesCS5A01G287100 chr7A 90.361 83 7 1 1220 1302 511496219 511496300 1.380000e-19 108.0
15 TraesCS5A01G287100 chr7A 78.613 173 27 9 1130 1300 69901530 69901694 4.970000e-19 106.0
16 TraesCS5A01G287100 chrUn 91.798 951 46 14 2712 3637 364303915 364302972 0.000000e+00 1295.0
17 TraesCS5A01G287100 chrUn 79.144 187 27 11 1130 1314 84040042 84039866 6.380000e-23 119.0
18 TraesCS5A01G287100 chr1B 90.422 877 77 6 1 873 327029918 327029045 0.000000e+00 1147.0
19 TraesCS5A01G287100 chr1B 81.828 897 142 15 12 900 306228819 306229702 0.000000e+00 734.0
20 TraesCS5A01G287100 chr1B 89.610 77 8 0 1214 1290 460143436 460143512 8.320000e-17 99.0
21 TraesCS5A01G287100 chr6D 88.938 904 88 8 1 900 463166963 463166068 0.000000e+00 1105.0
22 TraesCS5A01G287100 chr6D 84.036 877 133 6 1 873 399754997 399755870 0.000000e+00 837.0
23 TraesCS5A01G287100 chr7D 87.929 903 99 6 1 900 270155399 270156294 0.000000e+00 1055.0
24 TraesCS5A01G287100 chr7D 85.660 530 67 5 374 900 431872219 431872742 1.910000e-152 549.0
25 TraesCS5A01G287100 chr7D 72.651 713 163 29 73 769 506718534 506719230 1.320000e-49 207.0
26 TraesCS5A01G287100 chr7D 80.838 167 22 8 1133 1297 421793074 421792916 4.930000e-24 122.0
27 TraesCS5A01G287100 chr7D 89.157 83 9 0 1215 1297 421410151 421410069 1.790000e-18 104.0
28 TraesCS5A01G287100 chr7D 85.714 98 11 3 1217 1314 65601033 65600939 2.310000e-17 100.0
29 TraesCS5A01G287100 chr2B 88.090 890 99 6 13 900 774082849 774081965 0.000000e+00 1050.0
30 TraesCS5A01G287100 chr2B 87.165 896 106 6 1 893 573206097 573206986 0.000000e+00 1009.0
31 TraesCS5A01G287100 chr2B 92.405 79 6 0 1220 1298 144021347 144021425 2.970000e-21 113.0
32 TraesCS5A01G287100 chr3D 87.597 903 102 7 1 900 461383976 461383081 0.000000e+00 1038.0
33 TraesCS5A01G287100 chr4D 87.043 903 108 6 1 900 149219436 149218540 0.000000e+00 1011.0
34 TraesCS5A01G287100 chr5D 94.444 576 25 4 1897 2466 391853990 391853416 0.000000e+00 880.0
35 TraesCS5A01G287100 chr5D 93.841 276 11 1 1350 1619 391854734 391854459 9.400000e-111 411.0
36 TraesCS5A01G287100 chr5D 89.298 299 29 1 1025 1320 391855110 391854812 4.440000e-99 372.0
37 TraesCS5A01G287100 chr5D 88.158 228 13 6 1660 1873 391854362 391854135 3.600000e-65 259.0
38 TraesCS5A01G287100 chr5D 73.898 590 134 20 73 652 487957201 487956622 6.120000e-53 219.0
39 TraesCS5A01G287100 chr5B 88.931 524 35 11 1671 2178 472278151 472277635 3.090000e-175 625.0
40 TraesCS5A01G287100 chr5B 90.780 282 14 5 1350 1619 472288221 472287940 2.060000e-97 366.0
41 TraesCS5A01G287100 chr5B 88.176 296 32 1 1028 1320 472288594 472288299 2.080000e-92 350.0
42 TraesCS5A01G287100 chr5B 85.946 185 14 4 2521 2694 472221282 472221099 1.730000e-43 187.0
43 TraesCS5A01G287100 chr2D 76.457 429 89 11 73 495 307154010 307153588 4.730000e-54 222.0
44 TraesCS5A01G287100 chr2D 79.592 196 34 5 1107 1299 11082040 11082232 6.340000e-28 135.0
45 TraesCS5A01G287100 chr2D 92.405 79 6 0 1220 1298 92736782 92736860 2.970000e-21 113.0
46 TraesCS5A01G287100 chr3B 86.486 185 25 0 1114 1298 176783470 176783286 1.710000e-48 204.0
47 TraesCS5A01G287100 chr3B 84.946 186 28 0 1114 1299 176859981 176859796 4.800000e-44 189.0
48 TraesCS5A01G287100 chr3B 84.946 186 28 0 1114 1299 176879732 176879547 4.800000e-44 189.0
49 TraesCS5A01G287100 chr3A 84.946 186 27 1 1114 1298 131084042 131083857 1.730000e-43 187.0
50 TraesCS5A01G287100 chr3A 84.324 185 29 0 1114 1298 131415501 131415685 8.030000e-42 182.0
51 TraesCS5A01G287100 chr7B 80.347 173 24 8 1130 1300 439416517 439416681 4.930000e-24 122.0
52 TraesCS5A01G287100 chr1D 89.610 77 8 0 1214 1290 342873139 342873215 8.320000e-17 99.0
53 TraesCS5A01G287100 chr1D 87.692 65 8 0 1234 1298 414775798 414775862 3.900000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G287100 chr5A 495026300 495029938 3638 True 6721.0 6721 100.00000 1 3639 1 chr5A.!!$R4 3638
1 TraesCS5A01G287100 chr5A 52004201 52005138 937 True 1356.0 1356 92.97100 2712 3637 1 chr5A.!!$R1 925
2 TraesCS5A01G287100 chr5A 470765121 470766053 932 True 1336.0 1336 92.68300 2711 3637 1 chr5A.!!$R3 926
3 TraesCS5A01G287100 chr6A 585581222 585582150 928 True 1463.0 1463 95.18200 2712 3637 1 chr6A.!!$R1 925
4 TraesCS5A01G287100 chr1A 41908053 41908996 943 False 1384.0 1384 93.46000 2712 3637 1 chr1A.!!$F1 925
5 TraesCS5A01G287100 chr2A 752288038 752288983 945 False 1380.0 1380 93.36800 2712 3637 1 chr2A.!!$F3 925
6 TraesCS5A01G287100 chr2A 460334777 460335613 836 True 1219.0 1219 93.12800 2806 3637 1 chr2A.!!$R1 831
7 TraesCS5A01G287100 chr2A 751527838 751528638 800 False 1142.0 1142 92.56500 2843 3637 1 chr2A.!!$F2 794
8 TraesCS5A01G287100 chr2A 608261418 608262187 769 False 1099.0 1099 92.51600 132 900 1 chr2A.!!$F1 768
9 TraesCS5A01G287100 chr7A 38539185 38540132 947 False 1365.0 1365 93.04500 2712 3637 1 chr7A.!!$F1 925
10 TraesCS5A01G287100 chr7A 734279349 734280282 933 True 1363.0 1363 93.22000 2712 3637 1 chr7A.!!$R2 925
11 TraesCS5A01G287100 chr7A 696203474 696204309 835 False 1160.0 1160 92.12400 2712 3527 1 chr7A.!!$F4 815
12 TraesCS5A01G287100 chr7A 518520693 518521588 895 True 1110.0 1110 89.03700 1 900 1 chr7A.!!$R1 899
13 TraesCS5A01G287100 chrUn 364302972 364303915 943 True 1295.0 1295 91.79800 2712 3637 1 chrUn.!!$R2 925
14 TraesCS5A01G287100 chr1B 327029045 327029918 873 True 1147.0 1147 90.42200 1 873 1 chr1B.!!$R1 872
15 TraesCS5A01G287100 chr1B 306228819 306229702 883 False 734.0 734 81.82800 12 900 1 chr1B.!!$F1 888
16 TraesCS5A01G287100 chr6D 463166068 463166963 895 True 1105.0 1105 88.93800 1 900 1 chr6D.!!$R1 899
17 TraesCS5A01G287100 chr6D 399754997 399755870 873 False 837.0 837 84.03600 1 873 1 chr6D.!!$F1 872
18 TraesCS5A01G287100 chr7D 270155399 270156294 895 False 1055.0 1055 87.92900 1 900 1 chr7D.!!$F1 899
19 TraesCS5A01G287100 chr7D 431872219 431872742 523 False 549.0 549 85.66000 374 900 1 chr7D.!!$F2 526
20 TraesCS5A01G287100 chr7D 506718534 506719230 696 False 207.0 207 72.65100 73 769 1 chr7D.!!$F3 696
21 TraesCS5A01G287100 chr2B 774081965 774082849 884 True 1050.0 1050 88.09000 13 900 1 chr2B.!!$R1 887
22 TraesCS5A01G287100 chr2B 573206097 573206986 889 False 1009.0 1009 87.16500 1 893 1 chr2B.!!$F2 892
23 TraesCS5A01G287100 chr3D 461383081 461383976 895 True 1038.0 1038 87.59700 1 900 1 chr3D.!!$R1 899
24 TraesCS5A01G287100 chr4D 149218540 149219436 896 True 1011.0 1011 87.04300 1 900 1 chr4D.!!$R1 899
25 TraesCS5A01G287100 chr5D 391853416 391855110 1694 True 480.5 880 91.43525 1025 2466 4 chr5D.!!$R2 1441
26 TraesCS5A01G287100 chr5D 487956622 487957201 579 True 219.0 219 73.89800 73 652 1 chr5D.!!$R1 579
27 TraesCS5A01G287100 chr5B 472277635 472278151 516 True 625.0 625 88.93100 1671 2178 1 chr5B.!!$R2 507
28 TraesCS5A01G287100 chr5B 472287940 472288594 654 True 358.0 366 89.47800 1028 1619 2 chr5B.!!$R3 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 989 0.037232 AGGTAGCTGAAACTCGTGGC 60.037 55.0 0.0 0.0 0.00 5.01 F
1662 1780 0.035317 TGCAGAGTGACAGCGGATTT 59.965 50.0 0.0 0.0 33.65 2.17 F
2201 2473 0.243636 GCCCTGTTTACATGGTGTGC 59.756 55.0 0.0 0.0 34.61 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 2863 0.036875 AGCTAGCTTTGGCGGAAGTT 59.963 50.000 12.68 0.0 44.37 2.66 R
2593 2868 0.107654 AAGGTAGCTAGCTTTGGCGG 60.108 55.000 28.22 0.0 40.79 6.13 R
3339 3660 3.821033 AGTTTGACCATAGTTTGACCAGC 59.179 43.478 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.000396 GGAAGGTGGCTGCAGGATT 60.000 57.895 17.12 0.00 0.00 3.01
146 147 7.906199 ACTTCACCTCAATCTAGCTATTAGT 57.094 36.000 0.00 0.00 0.00 2.24
230 231 1.594293 CACCGCCCGATCCACATAC 60.594 63.158 0.00 0.00 0.00 2.39
260 261 1.351017 TGTCAAGGGATTCAGTGGGTC 59.649 52.381 0.00 0.00 0.00 4.46
455 456 7.509050 CATATTGATTCAATGTGTTTTCGCA 57.491 32.000 21.49 1.93 44.68 5.10
496 497 2.739379 GCCTACAAGAGCTCAACTTGAC 59.261 50.000 17.77 0.00 44.92 3.18
554 557 1.553690 GGTGGTTGCAGGCTAGGAGA 61.554 60.000 0.00 0.00 0.00 3.71
842 850 3.941483 CCCGCTTGACATCTCTTGTAAAT 59.059 43.478 0.00 0.00 39.18 1.40
843 851 4.034510 CCCGCTTGACATCTCTTGTAAATC 59.965 45.833 0.00 0.00 39.18 2.17
900 908 6.790285 ACGTTATTGGTGTACTTTCGAAAT 57.210 33.333 11.70 4.70 0.00 2.17
901 909 7.193377 ACGTTATTGGTGTACTTTCGAAATT 57.807 32.000 11.70 8.60 0.00 1.82
902 910 7.641760 ACGTTATTGGTGTACTTTCGAAATTT 58.358 30.769 11.70 4.25 0.00 1.82
903 911 8.130469 ACGTTATTGGTGTACTTTCGAAATTTT 58.870 29.630 11.70 1.66 0.00 1.82
904 912 8.624028 CGTTATTGGTGTACTTTCGAAATTTTC 58.376 33.333 11.70 3.98 0.00 2.29
905 913 9.673454 GTTATTGGTGTACTTTCGAAATTTTCT 57.327 29.630 11.70 0.00 0.00 2.52
909 917 7.735500 TGGTGTACTTTCGAAATTTTCTATCG 58.264 34.615 11.70 0.00 37.90 2.92
910 918 7.385752 TGGTGTACTTTCGAAATTTTCTATCGT 59.614 33.333 11.70 5.05 37.79 3.73
911 919 8.225777 GGTGTACTTTCGAAATTTTCTATCGTT 58.774 33.333 11.70 0.00 37.79 3.85
912 920 9.037417 GTGTACTTTCGAAATTTTCTATCGTTG 57.963 33.333 11.70 0.00 37.79 4.10
913 921 8.767085 TGTACTTTCGAAATTTTCTATCGTTGT 58.233 29.630 11.70 3.62 37.79 3.32
916 924 9.807386 ACTTTCGAAATTTTCTATCGTTGTAAG 57.193 29.630 11.70 0.00 37.79 2.34
928 936 9.806203 TTCTATCGTTGTAAGAATTTATTCCGA 57.194 29.630 0.00 1.39 37.51 4.55
929 937 9.976511 TCTATCGTTGTAAGAATTTATTCCGAT 57.023 29.630 12.92 12.92 37.42 4.18
933 941 9.037737 TCGTTGTAAGAATTTATTCCGATAAGG 57.962 33.333 0.00 0.14 37.51 2.69
943 951 2.068834 TCCGATAAGGAGAGGTGGTC 57.931 55.000 0.00 0.00 45.98 4.02
944 952 1.569548 TCCGATAAGGAGAGGTGGTCT 59.430 52.381 0.00 0.00 45.98 3.85
945 953 1.683917 CCGATAAGGAGAGGTGGTCTG 59.316 57.143 0.00 0.00 45.00 3.51
946 954 1.683917 CGATAAGGAGAGGTGGTCTGG 59.316 57.143 0.00 0.00 34.71 3.86
947 955 2.753247 GATAAGGAGAGGTGGTCTGGT 58.247 52.381 0.00 0.00 34.71 4.00
948 956 2.715763 TAAGGAGAGGTGGTCTGGTT 57.284 50.000 0.00 0.00 34.71 3.67
949 957 1.059913 AAGGAGAGGTGGTCTGGTTG 58.940 55.000 0.00 0.00 34.71 3.77
950 958 0.104934 AGGAGAGGTGGTCTGGTTGT 60.105 55.000 0.00 0.00 34.71 3.32
951 959 0.765510 GGAGAGGTGGTCTGGTTGTT 59.234 55.000 0.00 0.00 34.71 2.83
952 960 1.143073 GGAGAGGTGGTCTGGTTGTTT 59.857 52.381 0.00 0.00 34.71 2.83
953 961 2.222027 GAGAGGTGGTCTGGTTGTTTG 58.778 52.381 0.00 0.00 34.71 2.93
954 962 1.564348 AGAGGTGGTCTGGTTGTTTGT 59.436 47.619 0.00 0.00 32.57 2.83
955 963 1.676006 GAGGTGGTCTGGTTGTTTGTG 59.324 52.381 0.00 0.00 0.00 3.33
956 964 0.102300 GGTGGTCTGGTTGTTTGTGC 59.898 55.000 0.00 0.00 0.00 4.57
957 965 1.102978 GTGGTCTGGTTGTTTGTGCT 58.897 50.000 0.00 0.00 0.00 4.40
958 966 2.294074 GTGGTCTGGTTGTTTGTGCTA 58.706 47.619 0.00 0.00 0.00 3.49
959 967 2.032924 GTGGTCTGGTTGTTTGTGCTAC 59.967 50.000 0.00 0.00 0.00 3.58
960 968 1.607148 GGTCTGGTTGTTTGTGCTACC 59.393 52.381 0.00 0.00 35.37 3.18
961 969 2.294074 GTCTGGTTGTTTGTGCTACCA 58.706 47.619 0.00 0.00 40.80 3.25
962 970 2.685897 GTCTGGTTGTTTGTGCTACCAA 59.314 45.455 0.00 0.00 42.02 3.67
963 971 2.948979 TCTGGTTGTTTGTGCTACCAAG 59.051 45.455 0.00 0.00 42.02 3.61
964 972 2.028130 TGGTTGTTTGTGCTACCAAGG 58.972 47.619 0.00 0.00 40.30 3.61
965 973 2.028876 GGTTGTTTGTGCTACCAAGGT 58.971 47.619 0.00 0.00 35.01 3.50
966 974 3.215975 GGTTGTTTGTGCTACCAAGGTA 58.784 45.455 0.00 0.00 35.01 3.08
977 985 2.457366 ACCAAGGTAGCTGAAACTCG 57.543 50.000 0.00 0.00 0.00 4.18
978 986 1.692519 ACCAAGGTAGCTGAAACTCGT 59.307 47.619 0.00 0.00 0.00 4.18
979 987 2.069273 CCAAGGTAGCTGAAACTCGTG 58.931 52.381 0.00 0.00 0.00 4.35
980 988 2.069273 CAAGGTAGCTGAAACTCGTGG 58.931 52.381 0.00 0.00 0.00 4.94
981 989 0.037232 AGGTAGCTGAAACTCGTGGC 60.037 55.000 0.00 0.00 0.00 5.01
982 990 1.019805 GGTAGCTGAAACTCGTGGCC 61.020 60.000 0.00 0.00 0.00 5.36
983 991 1.080093 TAGCTGAAACTCGTGGCCG 60.080 57.895 0.00 0.00 0.00 6.13
984 992 2.501223 TAGCTGAAACTCGTGGCCGG 62.501 60.000 0.00 0.00 33.95 6.13
985 993 3.423154 CTGAAACTCGTGGCCGGC 61.423 66.667 21.18 21.18 33.95 6.13
986 994 4.243008 TGAAACTCGTGGCCGGCA 62.243 61.111 30.85 12.04 33.95 5.69
987 995 2.746277 GAAACTCGTGGCCGGCAT 60.746 61.111 30.85 2.38 33.95 4.40
988 996 2.282180 AAACTCGTGGCCGGCATT 60.282 55.556 30.85 9.10 33.95 3.56
989 997 2.253414 GAAACTCGTGGCCGGCATTC 62.253 60.000 30.85 16.33 33.95 2.67
990 998 3.545124 AACTCGTGGCCGGCATTCA 62.545 57.895 30.85 15.00 33.95 2.57
991 999 3.499737 CTCGTGGCCGGCATTCAC 61.500 66.667 30.85 24.86 33.95 3.18
992 1000 3.958147 CTCGTGGCCGGCATTCACT 62.958 63.158 30.85 0.00 33.95 3.41
993 1001 3.499737 CGTGGCCGGCATTCACTC 61.500 66.667 30.85 9.47 0.00 3.51
994 1002 3.134127 GTGGCCGGCATTCACTCC 61.134 66.667 30.85 8.62 0.00 3.85
995 1003 3.645660 TGGCCGGCATTCACTCCA 61.646 61.111 30.85 11.59 0.00 3.86
996 1004 2.124151 GGCCGGCATTCACTCCAT 60.124 61.111 30.85 0.00 0.00 3.41
997 1005 2.189499 GGCCGGCATTCACTCCATC 61.189 63.158 30.85 1.22 0.00 3.51
998 1006 2.189499 GCCGGCATTCACTCCATCC 61.189 63.158 24.80 0.00 0.00 3.51
999 1007 1.526917 CCGGCATTCACTCCATCCC 60.527 63.158 0.00 0.00 0.00 3.85
1000 1008 1.528824 CGGCATTCACTCCATCCCT 59.471 57.895 0.00 0.00 0.00 4.20
1001 1009 0.533755 CGGCATTCACTCCATCCCTC 60.534 60.000 0.00 0.00 0.00 4.30
1002 1010 0.842635 GGCATTCACTCCATCCCTCT 59.157 55.000 0.00 0.00 0.00 3.69
1003 1011 1.202746 GGCATTCACTCCATCCCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
1004 1012 1.202746 GCATTCACTCCATCCCTCTCC 60.203 57.143 0.00 0.00 0.00 3.71
1005 1013 1.069823 CATTCACTCCATCCCTCTCCG 59.930 57.143 0.00 0.00 0.00 4.63
1006 1014 0.041238 TTCACTCCATCCCTCTCCGT 59.959 55.000 0.00 0.00 0.00 4.69
1007 1015 0.684479 TCACTCCATCCCTCTCCGTG 60.684 60.000 0.00 0.00 0.00 4.94
1008 1016 0.972983 CACTCCATCCCTCTCCGTGT 60.973 60.000 0.00 0.00 0.00 4.49
1009 1017 0.684805 ACTCCATCCCTCTCCGTGTC 60.685 60.000 0.00 0.00 0.00 3.67
1010 1018 0.684479 CTCCATCCCTCTCCGTGTCA 60.684 60.000 0.00 0.00 0.00 3.58
1011 1019 0.684479 TCCATCCCTCTCCGTGTCAG 60.684 60.000 0.00 0.00 0.00 3.51
1012 1020 0.684479 CCATCCCTCTCCGTGTCAGA 60.684 60.000 0.00 0.00 0.00 3.27
1013 1021 1.186200 CATCCCTCTCCGTGTCAGAA 58.814 55.000 0.00 0.00 0.00 3.02
1014 1022 1.550524 CATCCCTCTCCGTGTCAGAAA 59.449 52.381 0.00 0.00 0.00 2.52
1015 1023 1.938585 TCCCTCTCCGTGTCAGAAAT 58.061 50.000 0.00 0.00 0.00 2.17
1016 1024 2.257207 TCCCTCTCCGTGTCAGAAATT 58.743 47.619 0.00 0.00 0.00 1.82
1017 1025 3.437213 TCCCTCTCCGTGTCAGAAATTA 58.563 45.455 0.00 0.00 0.00 1.40
1018 1026 4.030913 TCCCTCTCCGTGTCAGAAATTAT 58.969 43.478 0.00 0.00 0.00 1.28
1019 1027 4.469945 TCCCTCTCCGTGTCAGAAATTATT 59.530 41.667 0.00 0.00 0.00 1.40
1020 1028 5.045869 TCCCTCTCCGTGTCAGAAATTATTT 60.046 40.000 0.00 0.00 0.00 1.40
1021 1029 5.294552 CCCTCTCCGTGTCAGAAATTATTTC 59.705 44.000 9.47 9.47 39.96 2.17
1023 1031 6.256757 CCTCTCCGTGTCAGAAATTATTTCTC 59.743 42.308 16.36 8.07 46.62 2.87
1040 1048 3.449528 TCTCGATCAAGCAAGATGAGG 57.550 47.619 0.00 0.54 30.73 3.86
1050 1058 1.451028 AAGATGAGGAGCAAGCGGC 60.451 57.895 0.00 0.00 45.30 6.53
1086 1094 2.757508 TCTGCTGGCTCCTCCTCG 60.758 66.667 0.00 0.00 35.26 4.63
1088 1096 1.754621 CTGCTGGCTCCTCCTCGTA 60.755 63.158 0.00 0.00 35.26 3.43
1095 1103 0.394625 GCTCCTCCTCGTACCACTCT 60.395 60.000 0.00 0.00 0.00 3.24
1096 1104 1.956159 GCTCCTCCTCGTACCACTCTT 60.956 57.143 0.00 0.00 0.00 2.85
1176 1187 2.590575 ACACCGGCAACAACCTCG 60.591 61.111 0.00 0.00 0.00 4.63
1184 1195 0.507358 GCAACAACCTCGTCGTCTTC 59.493 55.000 0.00 0.00 0.00 2.87
1188 1199 1.228800 AACCTCGTCGTCTTCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
1195 1206 4.821589 CGTCTTCCCCTCCAGCGC 62.822 72.222 0.00 0.00 0.00 5.92
1220 1231 4.849329 GACTACGTCCTGCGCCCG 62.849 72.222 4.18 4.47 46.11 6.13
1320 1331 0.592148 ATCGCTAGCTACCACTACGC 59.408 55.000 13.93 0.00 0.00 4.42
1322 1333 0.591741 CGCTAGCTACCACTACGCAC 60.592 60.000 13.93 0.00 0.00 5.34
1325 1336 2.286891 GCTAGCTACCACTACGCACTAC 60.287 54.545 7.70 0.00 0.00 2.73
1348 1379 2.188469 GCTCCCGGCCGATGTTAA 59.812 61.111 30.73 3.70 34.27 2.01
1354 1385 3.142951 TCCCGGCCGATGTTAATTATTG 58.857 45.455 30.73 4.18 0.00 1.90
1366 1425 7.754924 CGATGTTAATTATTGGCTGTTCTTTGT 59.245 33.333 0.00 0.00 0.00 2.83
1373 1432 0.249868 GGCTGTTCTTTGTTTGGGGC 60.250 55.000 0.00 0.00 0.00 5.80
1381 1440 1.476488 CTTTGTTTGGGGCCGGATTAG 59.524 52.381 5.05 0.00 0.00 1.73
1500 1559 3.838795 CGACGCCGCTTTCTTCCG 61.839 66.667 0.00 0.00 0.00 4.30
1619 1690 4.018779 CCCAAGGTGGTCCAACTCTAATTA 60.019 45.833 10.68 0.00 35.17 1.40
1620 1691 5.515886 CCCAAGGTGGTCCAACTCTAATTAA 60.516 44.000 10.68 0.00 35.17 1.40
1622 1693 5.175388 AGGTGGTCCAACTCTAATTAACC 57.825 43.478 2.59 0.00 35.89 2.85
1624 1695 5.874895 GTGGTCCAACTCTAATTAACCAC 57.125 43.478 14.48 14.48 45.72 4.16
1627 1735 3.061697 GTCCAACTCTAATTAACCACGCG 59.938 47.826 3.53 3.53 0.00 6.01
1636 1744 1.833434 TTAACCACGCGTTTCAGCCG 61.833 55.000 10.22 0.00 35.79 5.52
1655 1773 2.061773 CGGTAAACTGCAGAGTGACAG 58.938 52.381 23.35 7.99 39.86 3.51
1656 1774 1.801178 GGTAAACTGCAGAGTGACAGC 59.199 52.381 23.35 4.94 37.42 4.40
1658 1776 0.882042 AAACTGCAGAGTGACAGCGG 60.882 55.000 23.35 2.67 42.02 5.52
1660 1778 1.217511 CTGCAGAGTGACAGCGGAT 59.782 57.895 8.42 0.00 39.29 4.18
1661 1779 0.390866 CTGCAGAGTGACAGCGGATT 60.391 55.000 8.42 0.00 39.29 3.01
1662 1780 0.035317 TGCAGAGTGACAGCGGATTT 59.965 50.000 0.00 0.00 33.65 2.17
1663 1781 1.275010 TGCAGAGTGACAGCGGATTTA 59.725 47.619 0.00 0.00 33.65 1.40
1664 1782 2.093500 TGCAGAGTGACAGCGGATTTAT 60.093 45.455 0.00 0.00 33.65 1.40
1665 1783 2.541762 GCAGAGTGACAGCGGATTTATC 59.458 50.000 0.00 0.00 0.00 1.75
1709 1837 2.222376 CGAAACGTTCTTCAGCAGATCG 60.222 50.000 0.00 0.00 46.25 3.69
1757 1885 3.059597 CCAATGATTACGGCATCTTCGTC 60.060 47.826 0.00 0.00 41.38 4.20
1758 1886 1.835121 TGATTACGGCATCTTCGTCG 58.165 50.000 0.00 0.00 41.38 5.12
1759 1887 1.402613 TGATTACGGCATCTTCGTCGA 59.597 47.619 0.00 0.00 41.38 4.20
1851 1988 0.716108 CTCAATCGCCTCGTCAACAC 59.284 55.000 0.00 0.00 0.00 3.32
1867 2004 5.351465 CGTCAACACTGCAGGTTATTATCTT 59.649 40.000 19.93 0.00 0.00 2.40
1868 2005 6.128282 CGTCAACACTGCAGGTTATTATCTTT 60.128 38.462 19.93 0.00 0.00 2.52
1869 2006 7.064134 CGTCAACACTGCAGGTTATTATCTTTA 59.936 37.037 19.93 0.00 0.00 1.85
1881 2018 9.819267 AGGTTATTATCTTTATTATCTAGCCGC 57.181 33.333 0.00 0.00 0.00 6.53
2005 2274 2.246719 GCGACTATTGCCTCCAAGAT 57.753 50.000 0.00 0.00 33.80 2.40
2022 2291 4.201724 CCAAGATTACAACAAGCTAGCGAC 60.202 45.833 9.55 0.00 0.00 5.19
2146 2415 2.035442 GGAGTCGCCTGCCAAGTTC 61.035 63.158 0.00 0.00 0.00 3.01
2185 2454 3.069158 ACCACATATTCTGTACGTAGCCC 59.931 47.826 0.00 0.00 35.91 5.19
2192 2464 3.855689 TCTGTACGTAGCCCTGTTTAC 57.144 47.619 0.00 0.00 0.00 2.01
2196 2468 2.396590 ACGTAGCCCTGTTTACATGG 57.603 50.000 0.00 0.37 35.15 3.66
2201 2473 0.243636 GCCCTGTTTACATGGTGTGC 59.756 55.000 0.00 0.00 34.61 4.57
2218 2490 2.171725 GCGCCGGTGAGGATTGTAC 61.172 63.158 21.76 0.00 45.00 2.90
2219 2491 1.515954 CGCCGGTGAGGATTGTACT 59.484 57.895 10.20 0.00 45.00 2.73
2233 2505 1.996292 TGTACTGATGCTTGCGACTC 58.004 50.000 0.00 0.00 0.00 3.36
2303 2575 1.560860 GCACGCTTCTCTGTGGTGAC 61.561 60.000 0.00 0.00 36.61 3.67
2306 2578 1.004277 CGCTTCTCTGTGGTGACGAC 61.004 60.000 0.00 0.00 0.00 4.34
2322 2594 1.087771 CGACGGTGGAAACCTATGCC 61.088 60.000 0.00 0.00 0.00 4.40
2334 2606 1.515954 CTATGCCAGAACCCGTCGT 59.484 57.895 0.00 0.00 0.00 4.34
2354 2626 2.032071 CGCCTTTTCTGGGACGGT 59.968 61.111 0.00 0.00 35.30 4.83
2356 2628 1.228154 GCCTTTTCTGGGACGGTGT 60.228 57.895 0.00 0.00 35.30 4.16
2402 2674 0.403271 ACATGGCTCACCTCTTGCTT 59.597 50.000 0.00 0.00 36.63 3.91
2404 2676 0.990374 ATGGCTCACCTCTTGCTTCT 59.010 50.000 0.00 0.00 36.63 2.85
2461 2736 5.334879 GCTACAGTTTGTAATCAAGGTGGTG 60.335 44.000 0.00 0.00 31.67 4.17
2466 2741 2.967362 TGTAATCAAGGTGGTGCTACG 58.033 47.619 0.00 0.00 0.00 3.51
2467 2742 2.300723 TGTAATCAAGGTGGTGCTACGT 59.699 45.455 0.00 0.00 0.00 3.57
2468 2743 3.510753 TGTAATCAAGGTGGTGCTACGTA 59.489 43.478 0.00 0.00 0.00 3.57
2469 2744 2.667473 ATCAAGGTGGTGCTACGTAC 57.333 50.000 0.00 0.00 0.00 3.67
2470 2745 0.604578 TCAAGGTGGTGCTACGTACC 59.395 55.000 0.00 0.00 38.78 3.34
2471 2746 0.606604 CAAGGTGGTGCTACGTACCT 59.393 55.000 7.47 3.65 45.07 3.08
2472 2747 1.820519 CAAGGTGGTGCTACGTACCTA 59.179 52.381 5.89 0.00 42.47 3.08
2473 2748 1.467920 AGGTGGTGCTACGTACCTAC 58.532 55.000 3.59 2.64 41.54 3.18
2484 2759 1.730501 CGTACCTACGTCTCCAGACA 58.269 55.000 7.48 0.00 44.99 3.41
2485 2760 2.286872 CGTACCTACGTCTCCAGACAT 58.713 52.381 7.48 0.00 44.99 3.06
2486 2761 2.287373 CGTACCTACGTCTCCAGACATC 59.713 54.545 7.48 0.00 44.99 3.06
2487 2762 1.765230 ACCTACGTCTCCAGACATCC 58.235 55.000 7.48 0.00 44.99 3.51
2488 2763 1.005569 ACCTACGTCTCCAGACATCCA 59.994 52.381 7.48 0.00 44.99 3.41
2489 2764 2.100197 CCTACGTCTCCAGACATCCAA 58.900 52.381 7.48 0.00 44.99 3.53
2490 2765 2.496070 CCTACGTCTCCAGACATCCAAA 59.504 50.000 7.48 0.00 44.99 3.28
2491 2766 3.056107 CCTACGTCTCCAGACATCCAAAA 60.056 47.826 7.48 0.00 44.99 2.44
2492 2767 3.703001 ACGTCTCCAGACATCCAAAAT 57.297 42.857 7.48 0.00 44.99 1.82
2493 2768 4.021102 ACGTCTCCAGACATCCAAAATT 57.979 40.909 7.48 0.00 44.99 1.82
2494 2769 5.160607 ACGTCTCCAGACATCCAAAATTA 57.839 39.130 7.48 0.00 44.99 1.40
2495 2770 5.178797 ACGTCTCCAGACATCCAAAATTAG 58.821 41.667 7.48 0.00 44.99 1.73
2496 2771 4.034510 CGTCTCCAGACATCCAAAATTAGC 59.965 45.833 7.48 0.00 44.99 3.09
2497 2772 4.336713 GTCTCCAGACATCCAAAATTAGCC 59.663 45.833 1.61 0.00 44.18 3.93
2498 2773 4.018506 TCTCCAGACATCCAAAATTAGCCA 60.019 41.667 0.00 0.00 0.00 4.75
2499 2774 4.870636 TCCAGACATCCAAAATTAGCCAT 58.129 39.130 0.00 0.00 0.00 4.40
2500 2775 4.646040 TCCAGACATCCAAAATTAGCCATG 59.354 41.667 0.00 0.00 0.00 3.66
2501 2776 4.202182 CCAGACATCCAAAATTAGCCATGG 60.202 45.833 7.63 7.63 0.00 3.66
2502 2777 4.403432 CAGACATCCAAAATTAGCCATGGT 59.597 41.667 14.67 2.69 34.50 3.55
2503 2778 4.403432 AGACATCCAAAATTAGCCATGGTG 59.597 41.667 14.67 1.06 34.50 4.17
2504 2779 3.118665 ACATCCAAAATTAGCCATGGTGC 60.119 43.478 14.67 0.00 34.50 5.01
2505 2780 2.533916 TCCAAAATTAGCCATGGTGCA 58.466 42.857 14.67 0.00 34.50 4.57
2506 2781 2.496871 TCCAAAATTAGCCATGGTGCAG 59.503 45.455 14.67 0.00 34.50 4.41
2507 2782 2.419021 CCAAAATTAGCCATGGTGCAGG 60.419 50.000 14.67 1.44 0.00 4.85
2508 2783 1.488390 AAATTAGCCATGGTGCAGGG 58.512 50.000 14.67 0.00 38.46 4.45
2513 2788 4.738998 CCATGGTGCAGGGCGGAA 62.739 66.667 2.57 0.00 0.00 4.30
2514 2789 3.136123 CATGGTGCAGGGCGGAAG 61.136 66.667 0.00 0.00 0.00 3.46
2515 2790 4.431131 ATGGTGCAGGGCGGAAGG 62.431 66.667 0.00 0.00 0.00 3.46
2540 2815 2.958213 GCTTCCGCCAAATGAAAATGA 58.042 42.857 0.00 0.00 0.00 2.57
2541 2816 3.524541 GCTTCCGCCAAATGAAAATGAT 58.475 40.909 0.00 0.00 0.00 2.45
2542 2817 3.307782 GCTTCCGCCAAATGAAAATGATG 59.692 43.478 0.00 0.00 0.00 3.07
2543 2818 2.891112 TCCGCCAAATGAAAATGATGC 58.109 42.857 0.00 0.00 0.00 3.91
2544 2819 2.496871 TCCGCCAAATGAAAATGATGCT 59.503 40.909 0.00 0.00 0.00 3.79
2545 2820 3.698539 TCCGCCAAATGAAAATGATGCTA 59.301 39.130 0.00 0.00 0.00 3.49
2546 2821 3.798337 CCGCCAAATGAAAATGATGCTAC 59.202 43.478 0.00 0.00 0.00 3.58
2547 2822 4.440525 CCGCCAAATGAAAATGATGCTACT 60.441 41.667 0.00 0.00 0.00 2.57
2548 2823 5.221028 CCGCCAAATGAAAATGATGCTACTA 60.221 40.000 0.00 0.00 0.00 1.82
2549 2824 6.264832 CGCCAAATGAAAATGATGCTACTAA 58.735 36.000 0.00 0.00 0.00 2.24
2550 2825 6.919662 CGCCAAATGAAAATGATGCTACTAAT 59.080 34.615 0.00 0.00 0.00 1.73
2551 2826 7.436080 CGCCAAATGAAAATGATGCTACTAATT 59.564 33.333 0.00 0.00 0.00 1.40
2552 2827 8.758715 GCCAAATGAAAATGATGCTACTAATTC 58.241 33.333 0.00 0.00 0.00 2.17
2553 2828 9.806203 CCAAATGAAAATGATGCTACTAATTCA 57.194 29.630 0.00 0.00 0.00 2.57
2557 2832 8.915871 TGAAAATGATGCTACTAATTCAAAGC 57.084 30.769 0.00 0.00 35.51 3.51
2559 2834 8.693542 AAAATGATGCTACTAATTCAAAGCAC 57.306 30.769 9.83 6.24 46.84 4.40
2560 2835 7.395190 AATGATGCTACTAATTCAAAGCACA 57.605 32.000 9.83 10.21 46.84 4.57
2561 2836 6.182039 TGATGCTACTAATTCAAAGCACAC 57.818 37.500 9.83 8.40 46.84 3.82
2562 2837 5.123820 TGATGCTACTAATTCAAAGCACACC 59.876 40.000 9.83 4.98 46.84 4.16
2563 2838 4.393834 TGCTACTAATTCAAAGCACACCA 58.606 39.130 4.83 0.00 39.92 4.17
2564 2839 5.009631 TGCTACTAATTCAAAGCACACCAT 58.990 37.500 4.83 0.00 39.92 3.55
2565 2840 5.106197 TGCTACTAATTCAAAGCACACCATG 60.106 40.000 4.83 0.00 39.92 3.66
2587 2862 5.040715 GCTTGCTTAGCTATAATCCTTGC 57.959 43.478 5.60 0.00 46.77 4.01
2588 2863 4.516698 GCTTGCTTAGCTATAATCCTTGCA 59.483 41.667 5.60 0.00 46.77 4.08
2589 2864 5.009010 GCTTGCTTAGCTATAATCCTTGCAA 59.991 40.000 5.60 0.00 46.77 4.08
2590 2865 6.377327 TTGCTTAGCTATAATCCTTGCAAC 57.623 37.500 5.60 0.00 33.78 4.17
2591 2866 5.684704 TGCTTAGCTATAATCCTTGCAACT 58.315 37.500 5.60 0.00 0.00 3.16
2592 2867 6.122277 TGCTTAGCTATAATCCTTGCAACTT 58.878 36.000 5.60 0.00 0.00 2.66
2593 2868 6.260936 TGCTTAGCTATAATCCTTGCAACTTC 59.739 38.462 5.60 0.00 0.00 3.01
2594 2869 6.293680 GCTTAGCTATAATCCTTGCAACTTCC 60.294 42.308 0.00 0.00 0.00 3.46
2595 2870 4.130118 AGCTATAATCCTTGCAACTTCCG 58.870 43.478 0.00 0.00 0.00 4.30
2596 2871 3.304057 GCTATAATCCTTGCAACTTCCGC 60.304 47.826 0.00 0.00 0.00 5.54
2597 2872 1.459450 TAATCCTTGCAACTTCCGCC 58.541 50.000 0.00 0.00 0.00 6.13
2598 2873 0.539438 AATCCTTGCAACTTCCGCCA 60.539 50.000 0.00 0.00 0.00 5.69
2599 2874 0.539438 ATCCTTGCAACTTCCGCCAA 60.539 50.000 0.00 0.00 0.00 4.52
2600 2875 0.753479 TCCTTGCAACTTCCGCCAAA 60.753 50.000 0.00 0.00 0.00 3.28
2601 2876 0.318955 CCTTGCAACTTCCGCCAAAG 60.319 55.000 0.00 0.00 0.00 2.77
2602 2877 0.940991 CTTGCAACTTCCGCCAAAGC 60.941 55.000 0.00 0.00 0.00 3.51
2603 2878 1.391157 TTGCAACTTCCGCCAAAGCT 61.391 50.000 0.00 0.00 36.60 3.74
2604 2879 0.536233 TGCAACTTCCGCCAAAGCTA 60.536 50.000 0.00 0.00 36.60 3.32
2605 2880 0.169009 GCAACTTCCGCCAAAGCTAG 59.831 55.000 0.00 0.00 36.60 3.42
2606 2881 0.169009 CAACTTCCGCCAAAGCTAGC 59.831 55.000 6.62 6.62 36.60 3.42
2607 2882 0.036875 AACTTCCGCCAAAGCTAGCT 59.963 50.000 12.68 12.68 36.60 3.32
2608 2883 0.902531 ACTTCCGCCAAAGCTAGCTA 59.097 50.000 19.70 0.00 36.60 3.32
2609 2884 1.291132 CTTCCGCCAAAGCTAGCTAC 58.709 55.000 19.70 7.27 36.60 3.58
2610 2885 0.107848 TTCCGCCAAAGCTAGCTACC 60.108 55.000 19.70 5.76 36.60 3.18
2611 2886 0.976073 TCCGCCAAAGCTAGCTACCT 60.976 55.000 19.70 0.00 36.60 3.08
2612 2887 0.107654 CCGCCAAAGCTAGCTACCTT 60.108 55.000 19.70 5.93 36.60 3.50
2613 2888 1.291132 CGCCAAAGCTAGCTACCTTC 58.709 55.000 19.70 5.80 36.60 3.46
2614 2889 1.669604 GCCAAAGCTAGCTACCTTCC 58.330 55.000 19.70 0.95 35.50 3.46
2615 2890 1.941325 CCAAAGCTAGCTACCTTCCG 58.059 55.000 19.70 1.52 0.00 4.30
2616 2891 1.291132 CAAAGCTAGCTACCTTCCGC 58.709 55.000 19.70 0.00 0.00 5.54
2617 2892 0.178301 AAAGCTAGCTACCTTCCGCC 59.822 55.000 19.70 0.00 0.00 6.13
2618 2893 0.976073 AAGCTAGCTACCTTCCGCCA 60.976 55.000 19.70 0.00 0.00 5.69
2619 2894 0.976073 AGCTAGCTACCTTCCGCCAA 60.976 55.000 17.69 0.00 0.00 4.52
2620 2895 0.107848 GCTAGCTACCTTCCGCCAAA 60.108 55.000 7.70 0.00 0.00 3.28
2621 2896 1.475213 GCTAGCTACCTTCCGCCAAAT 60.475 52.381 7.70 0.00 0.00 2.32
2622 2897 2.213499 CTAGCTACCTTCCGCCAAATG 58.787 52.381 0.00 0.00 0.00 2.32
2623 2898 0.618458 AGCTACCTTCCGCCAAATGA 59.382 50.000 0.00 0.00 0.00 2.57
2624 2899 1.004277 AGCTACCTTCCGCCAAATGAA 59.996 47.619 0.00 0.00 0.00 2.57
2625 2900 1.816224 GCTACCTTCCGCCAAATGAAA 59.184 47.619 0.00 0.00 0.00 2.69
2626 2901 2.427095 GCTACCTTCCGCCAAATGAAAT 59.573 45.455 0.00 0.00 0.00 2.17
2627 2902 3.734902 GCTACCTTCCGCCAAATGAAATG 60.735 47.826 0.00 0.00 0.00 2.32
2628 2903 2.524306 ACCTTCCGCCAAATGAAATGA 58.476 42.857 0.00 0.00 0.00 2.57
2629 2904 2.896685 ACCTTCCGCCAAATGAAATGAA 59.103 40.909 0.00 0.00 0.00 2.57
2630 2905 3.056607 ACCTTCCGCCAAATGAAATGAAG 60.057 43.478 0.00 0.00 0.00 3.02
2631 2906 2.652941 TCCGCCAAATGAAATGAAGC 57.347 45.000 0.00 0.00 0.00 3.86
2632 2907 1.891811 TCCGCCAAATGAAATGAAGCA 59.108 42.857 0.00 0.00 0.00 3.91
2633 2908 2.496871 TCCGCCAAATGAAATGAAGCAT 59.503 40.909 0.00 0.00 0.00 3.79
2634 2909 3.055963 TCCGCCAAATGAAATGAAGCATT 60.056 39.130 0.00 0.00 35.39 3.56
2635 2910 3.685756 CCGCCAAATGAAATGAAGCATTT 59.314 39.130 5.17 5.17 45.25 2.32
2644 2919 9.550406 AAATGAAATGAAGCATTTGAAGAGAAA 57.450 25.926 9.85 0.00 43.05 2.52
2645 2920 9.550406 AATGAAATGAAGCATTTGAAGAGAAAA 57.450 25.926 9.85 0.00 43.05 2.29
2646 2921 8.945481 TGAAATGAAGCATTTGAAGAGAAAAA 57.055 26.923 9.85 0.00 43.05 1.94
2669 2944 7.775397 AAATTGAAACAAAGTGATTGAGTGG 57.225 32.000 0.00 0.00 41.85 4.00
2670 2945 4.305989 TGAAACAAAGTGATTGAGTGGC 57.694 40.909 0.00 0.00 41.85 5.01
2671 2946 3.953612 TGAAACAAAGTGATTGAGTGGCT 59.046 39.130 0.00 0.00 41.85 4.75
2672 2947 4.402155 TGAAACAAAGTGATTGAGTGGCTT 59.598 37.500 0.00 0.00 41.85 4.35
2673 2948 5.105392 TGAAACAAAGTGATTGAGTGGCTTT 60.105 36.000 0.00 0.00 41.85 3.51
2674 2949 4.574599 ACAAAGTGATTGAGTGGCTTTC 57.425 40.909 0.00 0.00 41.85 2.62
2675 2950 3.003689 ACAAAGTGATTGAGTGGCTTTCG 59.996 43.478 0.00 0.00 41.85 3.46
2676 2951 1.160137 AGTGATTGAGTGGCTTTCGC 58.840 50.000 0.00 0.00 0.00 4.70
2677 2952 0.874390 GTGATTGAGTGGCTTTCGCA 59.126 50.000 0.00 0.00 38.10 5.10
2678 2953 1.266718 GTGATTGAGTGGCTTTCGCAA 59.733 47.619 0.00 0.00 38.10 4.85
2679 2954 1.952990 TGATTGAGTGGCTTTCGCAAA 59.047 42.857 0.00 0.00 38.10 3.68
2680 2955 2.287547 TGATTGAGTGGCTTTCGCAAAC 60.288 45.455 0.00 0.00 38.10 2.93
2681 2956 0.028770 TTGAGTGGCTTTCGCAAACG 59.971 50.000 0.00 0.00 42.01 3.60
2682 2957 1.092921 TGAGTGGCTTTCGCAAACGT 61.093 50.000 0.00 0.00 41.18 3.99
2683 2958 0.028902 GAGTGGCTTTCGCAAACGTT 59.971 50.000 0.00 0.00 41.18 3.99
2684 2959 1.262151 GAGTGGCTTTCGCAAACGTTA 59.738 47.619 0.00 0.00 41.18 3.18
2685 2960 1.671845 AGTGGCTTTCGCAAACGTTAA 59.328 42.857 0.00 0.00 41.18 2.01
2686 2961 2.041244 GTGGCTTTCGCAAACGTTAAG 58.959 47.619 0.00 1.93 41.18 1.85
2687 2962 1.050009 GGCTTTCGCAAACGTTAAGC 58.950 50.000 19.68 19.68 46.86 3.09
2688 2963 1.749153 GCTTTCGCAAACGTTAAGCA 58.251 45.000 21.87 9.60 46.83 3.91
2689 2964 2.315901 GCTTTCGCAAACGTTAAGCAT 58.684 42.857 21.87 0.00 46.83 3.79
2690 2965 2.088969 GCTTTCGCAAACGTTAAGCATG 59.911 45.455 21.87 9.64 46.83 4.06
2691 2966 1.680668 TTCGCAAACGTTAAGCATGC 58.319 45.000 20.96 10.51 41.18 4.06
2692 2967 0.871722 TCGCAAACGTTAAGCATGCT 59.128 45.000 16.30 16.30 41.18 3.79
2693 2968 2.070028 TCGCAAACGTTAAGCATGCTA 58.930 42.857 23.00 2.60 41.18 3.49
2694 2969 2.480802 TCGCAAACGTTAAGCATGCTAA 59.519 40.909 23.00 12.63 41.18 3.09
2695 2970 3.126171 TCGCAAACGTTAAGCATGCTAAT 59.874 39.130 23.00 9.14 41.18 1.73
2696 2971 3.851403 CGCAAACGTTAAGCATGCTAATT 59.149 39.130 23.00 8.29 33.96 1.40
2697 2972 4.028509 CGCAAACGTTAAGCATGCTAATTC 60.029 41.667 23.00 10.92 33.96 2.17
2698 2973 5.095490 GCAAACGTTAAGCATGCTAATTCT 58.905 37.500 23.00 7.43 33.52 2.40
2699 2974 5.572896 GCAAACGTTAAGCATGCTAATTCTT 59.427 36.000 23.00 6.59 33.52 2.52
2700 2975 6.237306 GCAAACGTTAAGCATGCTAATTCTTC 60.237 38.462 23.00 6.74 33.52 2.87
2701 2976 5.485662 ACGTTAAGCATGCTAATTCTTCC 57.514 39.130 23.00 2.54 0.00 3.46
2702 2977 4.034048 ACGTTAAGCATGCTAATTCTTCCG 59.966 41.667 23.00 15.89 0.00 4.30
2703 2978 4.282873 GTTAAGCATGCTAATTCTTCCGC 58.717 43.478 23.00 0.00 0.00 5.54
2704 2979 2.338577 AGCATGCTAATTCTTCCGCT 57.661 45.000 21.21 0.00 0.00 5.52
2705 2980 3.475566 AGCATGCTAATTCTTCCGCTA 57.524 42.857 21.21 0.00 0.00 4.26
2706 2981 3.808728 AGCATGCTAATTCTTCCGCTAA 58.191 40.909 21.21 0.00 0.00 3.09
2707 2982 4.199310 AGCATGCTAATTCTTCCGCTAAA 58.801 39.130 21.21 0.00 0.00 1.85
2708 2983 4.035675 AGCATGCTAATTCTTCCGCTAAAC 59.964 41.667 21.21 0.00 0.00 2.01
2709 2984 4.789802 GCATGCTAATTCTTCCGCTAAACC 60.790 45.833 11.37 0.00 0.00 3.27
2771 3046 1.280998 CCCATTAGTCCCGGTTCAGTT 59.719 52.381 0.00 0.00 0.00 3.16
2828 3103 0.830648 TGCGGCTAAGGCATTAGTCT 59.169 50.000 19.37 0.00 40.76 3.24
2836 3111 3.914426 AAGGCATTAGTCTCGGTTCAT 57.086 42.857 0.00 0.00 0.00 2.57
2841 3116 3.181475 GCATTAGTCTCGGTTCATCTGGA 60.181 47.826 0.00 0.00 0.00 3.86
2923 3198 4.360405 GGTGGCACCAACCGGGAT 62.360 66.667 31.26 0.00 38.42 3.85
2932 3215 1.990327 ACCAACCGGGATTAAAGGTCT 59.010 47.619 6.32 0.00 41.15 3.85
2933 3216 3.054948 CACCAACCGGGATTAAAGGTCTA 60.055 47.826 6.32 0.00 41.15 2.59
2934 3217 3.588396 ACCAACCGGGATTAAAGGTCTAA 59.412 43.478 6.32 0.00 41.15 2.10
2935 3218 3.943381 CCAACCGGGATTAAAGGTCTAAC 59.057 47.826 6.32 0.00 40.01 2.34
2936 3219 3.920231 ACCGGGATTAAAGGTCTAACC 57.080 47.619 6.32 0.00 38.99 2.85
2937 3220 7.331792 CCAACCGGGATTAAAGGTCTAACCT 62.332 48.000 6.32 0.00 46.29 3.50
2987 3270 6.859508 CGGTACTAAAGGTCCAATTTTCAAAC 59.140 38.462 0.00 0.00 0.00 2.93
2988 3271 7.255346 CGGTACTAAAGGTCCAATTTTCAAACT 60.255 37.037 0.00 0.00 0.00 2.66
2989 3272 8.080417 GGTACTAAAGGTCCAATTTTCAAACTC 58.920 37.037 0.00 0.00 0.00 3.01
2990 3273 7.050970 ACTAAAGGTCCAATTTTCAAACTCC 57.949 36.000 0.00 0.00 0.00 3.85
2991 3274 4.955811 AAGGTCCAATTTTCAAACTCCC 57.044 40.909 0.00 0.00 0.00 4.30
2992 3275 4.199002 AGGTCCAATTTTCAAACTCCCT 57.801 40.909 0.00 0.00 0.00 4.20
2993 3276 4.152647 AGGTCCAATTTTCAAACTCCCTC 58.847 43.478 0.00 0.00 0.00 4.30
3163 3480 6.789268 TCTCTCTGGAATTTGTAAAATGGGA 58.211 36.000 0.00 0.00 0.00 4.37
3584 3930 3.198409 TGTGTGACTTCATGCTCAAGT 57.802 42.857 0.00 0.00 36.77 3.16
3637 3984 9.520515 ACATCTTACTATTGTCAGGAAAACAAT 57.479 29.630 6.70 6.70 46.30 2.71
3638 3985 9.778993 CATCTTACTATTGTCAGGAAAACAATG 57.221 33.333 10.82 4.94 44.75 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.005650 GTGAATGTGAGCTCTCCATTCAA 58.994 43.478 36.60 26.75 46.27 2.69
146 147 1.001120 TGGATCCCGAGGCACAGTA 59.999 57.895 9.90 0.00 0.00 2.74
230 231 0.608130 TCCCTTGACACAGACGATGG 59.392 55.000 0.00 0.00 0.00 3.51
382 383 4.093011 ACAGGTGAAGCATCTAGAAGAGT 58.907 43.478 0.00 0.00 0.00 3.24
455 456 0.038166 ATTCATGCCACACTTCCCGT 59.962 50.000 0.00 0.00 0.00 5.28
554 557 2.057137 TGTGCTCTTTGCTGAAACCT 57.943 45.000 0.00 0.00 43.37 3.50
820 827 2.672961 TACAAGAGATGTCAAGCGGG 57.327 50.000 0.00 0.00 42.70 6.13
823 830 7.138692 ACAAGATTTACAAGAGATGTCAAGC 57.861 36.000 0.00 0.00 42.70 4.01
865 873 9.801873 GTACACCAATAACGTACCTTATCTTTA 57.198 33.333 0.00 0.00 31.34 1.85
866 874 8.534496 AGTACACCAATAACGTACCTTATCTTT 58.466 33.333 0.00 0.00 36.91 2.52
867 875 8.071177 AGTACACCAATAACGTACCTTATCTT 57.929 34.615 0.00 0.00 36.91 2.40
868 876 7.651027 AGTACACCAATAACGTACCTTATCT 57.349 36.000 0.00 0.00 36.91 1.98
887 895 8.767085 ACAACGATAGAAAATTTCGAAAGTACA 58.233 29.630 16.80 0.64 41.38 2.90
902 910 9.806203 TCGGAATAAATTCTTACAACGATAGAA 57.194 29.630 2.91 0.00 37.00 2.10
903 911 9.976511 ATCGGAATAAATTCTTACAACGATAGA 57.023 29.630 9.18 0.00 35.84 1.98
907 915 9.037737 CCTTATCGGAATAAATTCTTACAACGA 57.962 33.333 2.91 3.09 37.00 3.85
908 916 9.037737 TCCTTATCGGAATAAATTCTTACAACG 57.962 33.333 2.91 0.00 39.40 4.10
911 919 9.982651 CTCTCCTTATCGGAATAAATTCTTACA 57.017 33.333 2.91 0.00 42.53 2.41
912 920 9.425577 CCTCTCCTTATCGGAATAAATTCTTAC 57.574 37.037 2.91 0.00 42.53 2.34
913 921 9.155785 ACCTCTCCTTATCGGAATAAATTCTTA 57.844 33.333 2.91 0.00 42.53 2.10
914 922 7.934120 CACCTCTCCTTATCGGAATAAATTCTT 59.066 37.037 2.91 0.00 42.53 2.52
915 923 7.445945 CACCTCTCCTTATCGGAATAAATTCT 58.554 38.462 2.91 0.00 42.53 2.40
916 924 6.651225 CCACCTCTCCTTATCGGAATAAATTC 59.349 42.308 0.00 0.00 42.53 2.17
917 925 6.101296 ACCACCTCTCCTTATCGGAATAAATT 59.899 38.462 0.00 0.00 42.53 1.82
918 926 5.607171 ACCACCTCTCCTTATCGGAATAAAT 59.393 40.000 0.00 0.00 42.53 1.40
919 927 4.966805 ACCACCTCTCCTTATCGGAATAAA 59.033 41.667 0.00 0.00 42.53 1.40
920 928 4.553678 ACCACCTCTCCTTATCGGAATAA 58.446 43.478 0.00 0.00 42.53 1.40
921 929 4.140994 AGACCACCTCTCCTTATCGGAATA 60.141 45.833 0.00 0.00 42.53 1.75
922 930 2.966516 GACCACCTCTCCTTATCGGAAT 59.033 50.000 0.00 0.00 42.53 3.01
923 931 2.024273 AGACCACCTCTCCTTATCGGAA 60.024 50.000 0.00 0.00 42.53 4.30
924 932 1.569548 AGACCACCTCTCCTTATCGGA 59.430 52.381 0.00 0.00 40.30 4.55
925 933 1.683917 CAGACCACCTCTCCTTATCGG 59.316 57.143 0.00 0.00 0.00 4.18
926 934 1.683917 CCAGACCACCTCTCCTTATCG 59.316 57.143 0.00 0.00 0.00 2.92
927 935 2.753247 ACCAGACCACCTCTCCTTATC 58.247 52.381 0.00 0.00 0.00 1.75
928 936 2.840651 CAACCAGACCACCTCTCCTTAT 59.159 50.000 0.00 0.00 0.00 1.73
929 937 2.257207 CAACCAGACCACCTCTCCTTA 58.743 52.381 0.00 0.00 0.00 2.69
930 938 1.059913 CAACCAGACCACCTCTCCTT 58.940 55.000 0.00 0.00 0.00 3.36
931 939 0.104934 ACAACCAGACCACCTCTCCT 60.105 55.000 0.00 0.00 0.00 3.69
932 940 0.765510 AACAACCAGACCACCTCTCC 59.234 55.000 0.00 0.00 0.00 3.71
933 941 2.222027 CAAACAACCAGACCACCTCTC 58.778 52.381 0.00 0.00 0.00 3.20
934 942 1.564348 ACAAACAACCAGACCACCTCT 59.436 47.619 0.00 0.00 0.00 3.69
935 943 1.676006 CACAAACAACCAGACCACCTC 59.324 52.381 0.00 0.00 0.00 3.85
936 944 1.762708 CACAAACAACCAGACCACCT 58.237 50.000 0.00 0.00 0.00 4.00
937 945 0.102300 GCACAAACAACCAGACCACC 59.898 55.000 0.00 0.00 0.00 4.61
938 946 1.102978 AGCACAAACAACCAGACCAC 58.897 50.000 0.00 0.00 0.00 4.16
939 947 2.294074 GTAGCACAAACAACCAGACCA 58.706 47.619 0.00 0.00 0.00 4.02
940 948 1.607148 GGTAGCACAAACAACCAGACC 59.393 52.381 0.00 0.00 32.04 3.85
941 949 2.294074 TGGTAGCACAAACAACCAGAC 58.706 47.619 0.00 0.00 37.09 3.51
942 950 2.719531 TGGTAGCACAAACAACCAGA 57.280 45.000 0.00 0.00 37.09 3.86
943 951 2.034558 CCTTGGTAGCACAAACAACCAG 59.965 50.000 0.00 0.00 42.66 4.00
944 952 2.028130 CCTTGGTAGCACAAACAACCA 58.972 47.619 0.00 0.00 40.19 3.67
945 953 2.028876 ACCTTGGTAGCACAAACAACC 58.971 47.619 0.00 0.00 0.00 3.77
946 954 4.483476 CTACCTTGGTAGCACAAACAAC 57.517 45.455 13.16 0.00 0.00 3.32
956 964 3.056749 ACGAGTTTCAGCTACCTTGGTAG 60.057 47.826 19.50 19.50 0.00 3.18
957 965 2.895404 ACGAGTTTCAGCTACCTTGGTA 59.105 45.455 0.00 0.00 0.00 3.25
958 966 1.692519 ACGAGTTTCAGCTACCTTGGT 59.307 47.619 0.00 0.00 0.00 3.67
959 967 2.069273 CACGAGTTTCAGCTACCTTGG 58.931 52.381 0.00 0.00 0.00 3.61
960 968 2.069273 CCACGAGTTTCAGCTACCTTG 58.931 52.381 0.00 0.00 0.00 3.61
961 969 1.608283 GCCACGAGTTTCAGCTACCTT 60.608 52.381 0.00 0.00 0.00 3.50
962 970 0.037232 GCCACGAGTTTCAGCTACCT 60.037 55.000 0.00 0.00 0.00 3.08
963 971 1.019805 GGCCACGAGTTTCAGCTACC 61.020 60.000 0.00 0.00 0.00 3.18
964 972 1.352156 CGGCCACGAGTTTCAGCTAC 61.352 60.000 2.24 0.00 44.60 3.58
965 973 1.080093 CGGCCACGAGTTTCAGCTA 60.080 57.895 2.24 0.00 44.60 3.32
966 974 2.357517 CGGCCACGAGTTTCAGCT 60.358 61.111 2.24 0.00 44.60 4.24
967 975 3.423154 CCGGCCACGAGTTTCAGC 61.423 66.667 2.24 0.00 44.60 4.26
968 976 3.423154 GCCGGCCACGAGTTTCAG 61.423 66.667 18.11 0.00 44.60 3.02
969 977 3.545124 ATGCCGGCCACGAGTTTCA 62.545 57.895 26.77 0.00 44.60 2.69
970 978 2.253414 GAATGCCGGCCACGAGTTTC 62.253 60.000 26.77 11.31 44.60 2.78
971 979 2.282180 AATGCCGGCCACGAGTTT 60.282 55.556 26.77 3.07 44.60 2.66
972 980 2.746277 GAATGCCGGCCACGAGTT 60.746 61.111 26.77 8.97 44.60 3.01
973 981 4.015406 TGAATGCCGGCCACGAGT 62.015 61.111 26.77 3.39 44.60 4.18
974 982 3.499737 GTGAATGCCGGCCACGAG 61.500 66.667 26.77 0.00 44.60 4.18
975 983 3.950794 GAGTGAATGCCGGCCACGA 62.951 63.158 26.77 4.98 44.60 4.35
976 984 3.499737 GAGTGAATGCCGGCCACG 61.500 66.667 26.77 0.00 36.06 4.94
977 985 3.134127 GGAGTGAATGCCGGCCAC 61.134 66.667 26.77 24.11 0.00 5.01
978 986 2.891941 GATGGAGTGAATGCCGGCCA 62.892 60.000 26.77 12.55 0.00 5.36
979 987 2.124151 ATGGAGTGAATGCCGGCC 60.124 61.111 26.77 9.46 0.00 6.13
980 988 2.189499 GGATGGAGTGAATGCCGGC 61.189 63.158 22.73 22.73 0.00 6.13
981 989 1.526917 GGGATGGAGTGAATGCCGG 60.527 63.158 0.00 0.00 0.00 6.13
982 990 0.533755 GAGGGATGGAGTGAATGCCG 60.534 60.000 0.00 0.00 40.27 5.69
983 991 0.842635 AGAGGGATGGAGTGAATGCC 59.157 55.000 0.00 0.00 35.85 4.40
984 992 1.202746 GGAGAGGGATGGAGTGAATGC 60.203 57.143 0.00 0.00 0.00 3.56
985 993 1.069823 CGGAGAGGGATGGAGTGAATG 59.930 57.143 0.00 0.00 0.00 2.67
986 994 1.343478 ACGGAGAGGGATGGAGTGAAT 60.343 52.381 0.00 0.00 0.00 2.57
987 995 0.041238 ACGGAGAGGGATGGAGTGAA 59.959 55.000 0.00 0.00 0.00 3.18
988 996 0.684479 CACGGAGAGGGATGGAGTGA 60.684 60.000 0.00 0.00 0.00 3.41
989 997 0.972983 ACACGGAGAGGGATGGAGTG 60.973 60.000 0.00 0.00 0.00 3.51
990 998 0.684805 GACACGGAGAGGGATGGAGT 60.685 60.000 0.00 0.00 0.00 3.85
991 999 0.684479 TGACACGGAGAGGGATGGAG 60.684 60.000 0.00 0.00 0.00 3.86
992 1000 0.684479 CTGACACGGAGAGGGATGGA 60.684 60.000 0.00 0.00 0.00 3.41
993 1001 0.684479 TCTGACACGGAGAGGGATGG 60.684 60.000 0.00 0.00 0.00 3.51
994 1002 1.186200 TTCTGACACGGAGAGGGATG 58.814 55.000 0.00 0.00 0.00 3.51
995 1003 1.938585 TTTCTGACACGGAGAGGGAT 58.061 50.000 0.00 0.00 0.00 3.85
996 1004 1.938585 ATTTCTGACACGGAGAGGGA 58.061 50.000 0.00 0.00 0.00 4.20
997 1005 2.770164 AATTTCTGACACGGAGAGGG 57.230 50.000 0.00 0.00 0.00 4.30
998 1006 6.351327 GAAATAATTTCTGACACGGAGAGG 57.649 41.667 0.00 0.00 36.73 3.69
1011 1019 9.167239 CATCTTGCTTGATCGAGAAATAATTTC 57.833 33.333 14.59 0.00 39.96 2.17
1012 1020 8.896744 TCATCTTGCTTGATCGAGAAATAATTT 58.103 29.630 14.59 0.00 30.80 1.82
1013 1021 8.442632 TCATCTTGCTTGATCGAGAAATAATT 57.557 30.769 14.59 0.00 30.80 1.40
1014 1022 7.172875 CCTCATCTTGCTTGATCGAGAAATAAT 59.827 37.037 14.59 3.82 30.80 1.28
1015 1023 6.481313 CCTCATCTTGCTTGATCGAGAAATAA 59.519 38.462 14.59 1.52 30.80 1.40
1016 1024 5.987953 CCTCATCTTGCTTGATCGAGAAATA 59.012 40.000 14.59 2.57 30.80 1.40
1017 1025 4.815308 CCTCATCTTGCTTGATCGAGAAAT 59.185 41.667 14.59 0.00 30.80 2.17
1018 1026 4.081476 TCCTCATCTTGCTTGATCGAGAAA 60.081 41.667 14.59 8.75 30.80 2.52
1019 1027 3.448660 TCCTCATCTTGCTTGATCGAGAA 59.551 43.478 14.59 0.00 30.80 2.87
1020 1028 3.026694 TCCTCATCTTGCTTGATCGAGA 58.973 45.455 14.59 0.00 30.50 4.04
1021 1029 3.382855 CTCCTCATCTTGCTTGATCGAG 58.617 50.000 5.50 5.50 0.00 4.04
1022 1030 2.482664 GCTCCTCATCTTGCTTGATCGA 60.483 50.000 0.00 0.00 0.00 3.59
1023 1031 1.865970 GCTCCTCATCTTGCTTGATCG 59.134 52.381 0.00 0.00 0.00 3.69
1070 1078 1.754621 TACGAGGAGGAGCCAGCAG 60.755 63.158 0.00 0.00 40.02 4.24
1072 1080 2.787567 GGTACGAGGAGGAGCCAGC 61.788 68.421 0.00 0.00 40.02 4.85
1075 1083 1.380112 AGTGGTACGAGGAGGAGCC 60.380 63.158 0.00 0.00 0.00 4.70
1086 1094 2.120737 AACGGGCCCAAGAGTGGTAC 62.121 60.000 24.92 0.00 44.30 3.34
1088 1096 3.175710 AACGGGCCCAAGAGTGGT 61.176 61.111 24.92 6.48 44.30 4.16
1127 1138 0.740868 CGCCGAAGCTGAAGATGGAA 60.741 55.000 0.00 0.00 36.60 3.53
1176 1187 2.579738 GCTGGAGGGGAAGACGAC 59.420 66.667 0.00 0.00 0.00 4.34
1226 1237 2.125512 CCGAAGAAGGTGGAGCCG 60.126 66.667 0.00 0.00 43.70 5.52
1302 1313 0.745486 TGCGTAGTGGTAGCTAGCGA 60.745 55.000 17.59 0.00 0.00 4.93
1308 1319 3.231222 CGTAGTGCGTAGTGGTAGC 57.769 57.895 0.00 0.00 35.54 3.58
1320 1331 1.432251 CCGGGAGCAGTACGTAGTG 59.568 63.158 23.36 23.36 45.73 2.74
1322 1333 2.412112 GCCGGGAGCAGTACGTAG 59.588 66.667 2.18 0.00 42.97 3.51
1326 1337 3.537874 ATCGGCCGGGAGCAGTAC 61.538 66.667 27.83 0.00 46.50 2.73
1327 1338 3.536917 CATCGGCCGGGAGCAGTA 61.537 66.667 27.83 2.60 46.50 2.74
1342 1373 9.777297 AAACAAAGAACAGCCAATAATTAACAT 57.223 25.926 0.00 0.00 0.00 2.71
1348 1379 5.512921 CCCCAAACAAAGAACAGCCAATAAT 60.513 40.000 0.00 0.00 0.00 1.28
1354 1385 0.249868 GCCCCAAACAAAGAACAGCC 60.250 55.000 0.00 0.00 0.00 4.85
1356 1387 0.031994 CGGCCCCAAACAAAGAACAG 59.968 55.000 0.00 0.00 0.00 3.16
1366 1425 1.409101 GCTAACTAATCCGGCCCCAAA 60.409 52.381 0.00 0.00 0.00 3.28
1373 1432 1.326548 GTGTTGCGCTAACTAATCCGG 59.673 52.381 9.73 0.00 40.05 5.14
1381 1440 2.978018 GCCCAGGTGTTGCGCTAAC 61.978 63.158 9.73 12.16 39.80 2.34
1515 1574 0.398318 GTTGAGAGGCTTCCTGGTGT 59.602 55.000 0.00 0.00 31.76 4.16
1525 1584 1.673665 CAGGCTGGTGTTGAGAGGC 60.674 63.158 6.61 0.00 0.00 4.70
1619 1690 3.645975 CGGCTGAAACGCGTGGTT 61.646 61.111 14.98 3.48 41.76 3.67
1622 1693 1.833434 TTTACCGGCTGAAACGCGTG 61.833 55.000 14.98 0.00 0.00 5.34
1624 1695 1.154543 GTTTACCGGCTGAAACGCG 60.155 57.895 3.53 3.53 0.00 6.01
1627 1735 0.948678 TGCAGTTTACCGGCTGAAAC 59.051 50.000 15.82 15.82 36.08 2.78
1636 1744 1.801178 GCTGTCACTCTGCAGTTTACC 59.199 52.381 14.67 1.15 40.09 2.85
1655 1773 6.682020 CGTACGTAGATTAGAGATAAATCCGC 59.318 42.308 7.22 0.00 34.50 5.54
1656 1774 6.682020 GCGTACGTAGATTAGAGATAAATCCG 59.318 42.308 17.90 0.00 34.50 4.18
1658 1776 8.441608 TCTGCGTACGTAGATTAGAGATAAATC 58.558 37.037 28.75 1.22 32.12 2.17
1660 1778 7.440556 ACTCTGCGTACGTAGATTAGAGATAAA 59.559 37.037 31.57 9.23 36.35 1.40
1661 1779 6.927936 ACTCTGCGTACGTAGATTAGAGATAA 59.072 38.462 31.57 9.71 36.35 1.75
1662 1780 6.365518 CACTCTGCGTACGTAGATTAGAGATA 59.634 42.308 31.57 10.38 36.35 1.98
1663 1781 5.177881 CACTCTGCGTACGTAGATTAGAGAT 59.822 44.000 31.57 11.99 36.35 2.75
1664 1782 4.507021 CACTCTGCGTACGTAGATTAGAGA 59.493 45.833 31.57 11.93 36.35 3.10
1665 1783 4.763874 CACTCTGCGTACGTAGATTAGAG 58.236 47.826 31.57 22.60 36.35 2.43
1709 1837 2.240162 ATTCCCCCACGACGAAGAGC 62.240 60.000 0.00 0.00 0.00 4.09
1768 1896 4.976925 CTAGCGCCATCCCTGCCG 62.977 72.222 2.29 0.00 0.00 5.69
1779 1907 0.179134 ACGACATCTGGAACTAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
1830 1967 1.447838 TTGACGAGGCGATTGAGGC 60.448 57.895 0.00 0.00 0.00 4.70
1838 1975 2.661537 TGCAGTGTTGACGAGGCG 60.662 61.111 0.00 0.00 0.00 5.52
1844 1981 6.743575 AAGATAATAACCTGCAGTGTTGAC 57.256 37.500 22.99 12.99 0.00 3.18
1867 2004 1.068832 CGCGCGCGGCTAGATAATAA 61.069 55.000 43.28 0.00 40.44 1.40
1868 2005 1.513373 CGCGCGCGGCTAGATAATA 60.513 57.895 43.28 0.00 40.44 0.98
1869 2006 2.805353 CGCGCGCGGCTAGATAAT 60.805 61.111 43.28 0.00 40.44 1.28
1881 2018 0.853224 CAAGTGCTAATCAACGCGCG 60.853 55.000 30.96 30.96 41.26 6.86
1921 2190 1.804326 CACTAAACTCGTCGCCCCG 60.804 63.158 0.00 0.00 0.00 5.73
2000 2269 4.490959 CGTCGCTAGCTTGTTGTAATCTTG 60.491 45.833 13.93 0.00 0.00 3.02
2005 2274 1.065358 GCGTCGCTAGCTTGTTGTAA 58.935 50.000 13.93 0.00 0.00 2.41
2185 2454 0.109781 GGCGCACACCATGTAAACAG 60.110 55.000 10.83 0.00 0.00 3.16
2196 2468 4.760047 ATCCTCACCGGCGCACAC 62.760 66.667 10.83 0.00 0.00 3.82
2201 2473 0.806102 CAGTACAATCCTCACCGGCG 60.806 60.000 0.00 0.00 0.00 6.46
2218 2490 1.017701 TGCAGAGTCGCAAGCATCAG 61.018 55.000 7.11 0.00 39.45 2.90
2219 2491 1.004679 TGCAGAGTCGCAAGCATCA 60.005 52.632 7.11 0.00 39.45 3.07
2233 2505 1.671261 CGTCCTCTTCAAGACCTGCAG 60.671 57.143 6.78 6.78 0.00 4.41
2284 2556 1.300931 TCACCACAGAGAAGCGTGC 60.301 57.895 0.00 0.00 0.00 5.34
2322 2594 2.504244 GCGAGACGACGGGTTCTG 60.504 66.667 0.00 0.00 0.00 3.02
2334 2606 1.292223 CGTCCCAGAAAAGGCGAGA 59.708 57.895 0.00 0.00 0.00 4.04
2362 2634 1.911269 TGGTAAGCTGCCTCCGTGA 60.911 57.895 8.77 0.00 0.00 4.35
2402 2674 1.472878 GTGGTGTCGTCTATGCTGAGA 59.527 52.381 0.00 0.00 0.00 3.27
2404 2676 1.202348 CAGTGGTGTCGTCTATGCTGA 59.798 52.381 0.00 0.00 0.00 4.26
2474 2749 4.336713 GGCTAATTTTGGATGTCTGGAGAC 59.663 45.833 0.00 0.00 44.97 3.36
2475 2750 4.018506 TGGCTAATTTTGGATGTCTGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
2476 2751 4.272489 TGGCTAATTTTGGATGTCTGGAG 58.728 43.478 0.00 0.00 0.00 3.86
2477 2752 4.314522 TGGCTAATTTTGGATGTCTGGA 57.685 40.909 0.00 0.00 0.00 3.86
2478 2753 4.202182 CCATGGCTAATTTTGGATGTCTGG 60.202 45.833 0.00 0.00 0.00 3.86
2479 2754 4.403432 ACCATGGCTAATTTTGGATGTCTG 59.597 41.667 13.04 0.00 33.36 3.51
2480 2755 4.403432 CACCATGGCTAATTTTGGATGTCT 59.597 41.667 13.04 0.00 33.36 3.41
2481 2756 4.685924 CACCATGGCTAATTTTGGATGTC 58.314 43.478 13.04 0.00 33.36 3.06
2482 2757 3.118665 GCACCATGGCTAATTTTGGATGT 60.119 43.478 13.04 0.00 33.36 3.06
2483 2758 3.118702 TGCACCATGGCTAATTTTGGATG 60.119 43.478 13.04 0.00 33.36 3.51
2484 2759 3.106054 TGCACCATGGCTAATTTTGGAT 58.894 40.909 13.04 0.00 33.36 3.41
2485 2760 2.496871 CTGCACCATGGCTAATTTTGGA 59.503 45.455 13.04 0.45 33.36 3.53
2486 2761 2.419021 CCTGCACCATGGCTAATTTTGG 60.419 50.000 13.04 0.00 35.31 3.28
2487 2762 2.419021 CCCTGCACCATGGCTAATTTTG 60.419 50.000 13.04 1.20 34.04 2.44
2488 2763 1.832998 CCCTGCACCATGGCTAATTTT 59.167 47.619 13.04 0.00 34.04 1.82
2489 2764 1.488390 CCCTGCACCATGGCTAATTT 58.512 50.000 13.04 0.00 34.04 1.82
2490 2765 1.044790 GCCCTGCACCATGGCTAATT 61.045 55.000 13.04 0.00 40.98 1.40
2491 2766 1.456331 GCCCTGCACCATGGCTAAT 60.456 57.895 13.04 0.00 40.98 1.73
2492 2767 2.044053 GCCCTGCACCATGGCTAA 60.044 61.111 13.04 0.00 40.98 3.09
2493 2768 4.488136 CGCCCTGCACCATGGCTA 62.488 66.667 13.04 0.00 41.79 3.93
2496 2771 4.738998 TTCCGCCCTGCACCATGG 62.739 66.667 11.19 11.19 0.00 3.66
2497 2772 3.136123 CTTCCGCCCTGCACCATG 61.136 66.667 0.00 0.00 0.00 3.66
2498 2773 4.431131 CCTTCCGCCCTGCACCAT 62.431 66.667 0.00 0.00 0.00 3.55
2521 2796 3.307782 GCATCATTTTCATTTGGCGGAAG 59.692 43.478 0.00 0.00 0.00 3.46
2522 2797 3.055963 AGCATCATTTTCATTTGGCGGAA 60.056 39.130 0.00 0.00 0.00 4.30
2523 2798 2.496871 AGCATCATTTTCATTTGGCGGA 59.503 40.909 0.00 0.00 0.00 5.54
2524 2799 2.896168 AGCATCATTTTCATTTGGCGG 58.104 42.857 0.00 0.00 0.00 6.13
2525 2800 4.675510 AGTAGCATCATTTTCATTTGGCG 58.324 39.130 0.00 0.00 0.00 5.69
2526 2801 8.652810 AATTAGTAGCATCATTTTCATTTGGC 57.347 30.769 0.00 0.00 0.00 4.52
2527 2802 9.806203 TGAATTAGTAGCATCATTTTCATTTGG 57.194 29.630 0.00 0.00 0.00 3.28
2531 2806 9.525409 GCTTTGAATTAGTAGCATCATTTTCAT 57.475 29.630 0.00 0.00 33.88 2.57
2532 2807 8.522003 TGCTTTGAATTAGTAGCATCATTTTCA 58.478 29.630 4.30 0.00 38.61 2.69
2533 2808 8.801913 GTGCTTTGAATTAGTAGCATCATTTTC 58.198 33.333 10.04 0.00 44.52 2.29
2534 2809 8.306038 TGTGCTTTGAATTAGTAGCATCATTTT 58.694 29.630 10.04 0.00 44.52 1.82
2535 2810 7.756722 GTGTGCTTTGAATTAGTAGCATCATTT 59.243 33.333 10.04 0.00 44.52 2.32
2536 2811 7.253422 GTGTGCTTTGAATTAGTAGCATCATT 58.747 34.615 10.04 0.00 44.52 2.57
2537 2812 6.183360 GGTGTGCTTTGAATTAGTAGCATCAT 60.183 38.462 10.04 0.00 44.52 2.45
2538 2813 5.123820 GGTGTGCTTTGAATTAGTAGCATCA 59.876 40.000 10.04 8.00 44.52 3.07
2539 2814 5.123820 TGGTGTGCTTTGAATTAGTAGCATC 59.876 40.000 10.04 7.48 44.52 3.91
2540 2815 5.009631 TGGTGTGCTTTGAATTAGTAGCAT 58.990 37.500 10.04 0.00 44.52 3.79
2541 2816 4.393834 TGGTGTGCTTTGAATTAGTAGCA 58.606 39.130 4.30 4.30 41.01 3.49
2542 2817 5.335127 CATGGTGTGCTTTGAATTAGTAGC 58.665 41.667 0.00 0.00 0.00 3.58
2566 2841 6.261826 AGTTGCAAGGATTATAGCTAAGCAAG 59.738 38.462 0.00 0.00 39.73 4.01
2567 2842 6.122277 AGTTGCAAGGATTATAGCTAAGCAA 58.878 36.000 0.00 0.00 37.15 3.91
2568 2843 5.684704 AGTTGCAAGGATTATAGCTAAGCA 58.315 37.500 0.00 0.00 0.00 3.91
2569 2844 6.293680 GGAAGTTGCAAGGATTATAGCTAAGC 60.294 42.308 0.00 0.00 0.00 3.09
2570 2845 6.073548 CGGAAGTTGCAAGGATTATAGCTAAG 60.074 42.308 0.00 0.00 0.00 2.18
2571 2846 5.758296 CGGAAGTTGCAAGGATTATAGCTAA 59.242 40.000 0.00 0.00 0.00 3.09
2572 2847 5.297547 CGGAAGTTGCAAGGATTATAGCTA 58.702 41.667 0.00 0.00 0.00 3.32
2573 2848 4.130118 CGGAAGTTGCAAGGATTATAGCT 58.870 43.478 0.00 0.00 0.00 3.32
2574 2849 3.304057 GCGGAAGTTGCAAGGATTATAGC 60.304 47.826 0.00 0.00 0.00 2.97
2575 2850 3.251004 GGCGGAAGTTGCAAGGATTATAG 59.749 47.826 0.00 0.00 0.00 1.31
2576 2851 3.211045 GGCGGAAGTTGCAAGGATTATA 58.789 45.455 0.00 0.00 0.00 0.98
2577 2852 2.024414 GGCGGAAGTTGCAAGGATTAT 58.976 47.619 0.00 0.00 0.00 1.28
2578 2853 1.271652 TGGCGGAAGTTGCAAGGATTA 60.272 47.619 0.00 0.00 0.00 1.75
2579 2854 0.539438 TGGCGGAAGTTGCAAGGATT 60.539 50.000 0.00 0.00 0.00 3.01
2580 2855 0.539438 TTGGCGGAAGTTGCAAGGAT 60.539 50.000 0.00 0.00 0.00 3.24
2581 2856 0.753479 TTTGGCGGAAGTTGCAAGGA 60.753 50.000 0.00 0.00 0.00 3.36
2582 2857 0.318955 CTTTGGCGGAAGTTGCAAGG 60.319 55.000 0.00 0.00 0.00 3.61
2583 2858 0.940991 GCTTTGGCGGAAGTTGCAAG 60.941 55.000 0.00 0.00 0.00 4.01
2584 2859 1.067250 GCTTTGGCGGAAGTTGCAA 59.933 52.632 0.00 0.00 0.00 4.08
2585 2860 0.536233 TAGCTTTGGCGGAAGTTGCA 60.536 50.000 0.00 0.00 44.37 4.08
2586 2861 0.169009 CTAGCTTTGGCGGAAGTTGC 59.831 55.000 0.00 0.00 44.37 4.17
2587 2862 0.169009 GCTAGCTTTGGCGGAAGTTG 59.831 55.000 7.70 0.00 44.37 3.16
2588 2863 0.036875 AGCTAGCTTTGGCGGAAGTT 59.963 50.000 12.68 0.00 44.37 2.66
2589 2864 0.902531 TAGCTAGCTTTGGCGGAAGT 59.097 50.000 24.88 0.00 44.37 3.01
2590 2865 1.291132 GTAGCTAGCTTTGGCGGAAG 58.709 55.000 24.88 0.00 44.37 3.46
2591 2866 0.107848 GGTAGCTAGCTTTGGCGGAA 60.108 55.000 24.88 0.00 44.37 4.30
2592 2867 0.976073 AGGTAGCTAGCTTTGGCGGA 60.976 55.000 24.88 0.00 44.37 5.54
2593 2868 0.107654 AAGGTAGCTAGCTTTGGCGG 60.108 55.000 28.22 0.00 40.79 6.13
2594 2869 1.291132 GAAGGTAGCTAGCTTTGGCG 58.709 55.000 32.51 0.00 43.36 5.69
2595 2870 1.669604 GGAAGGTAGCTAGCTTTGGC 58.330 55.000 32.51 21.98 43.36 4.52
2596 2871 1.941325 CGGAAGGTAGCTAGCTTTGG 58.059 55.000 32.51 24.13 43.36 3.28
2597 2872 1.291132 GCGGAAGGTAGCTAGCTTTG 58.709 55.000 32.51 27.58 43.36 2.77
2598 2873 0.178301 GGCGGAAGGTAGCTAGCTTT 59.822 55.000 32.51 19.65 43.36 3.51
2599 2874 0.976073 TGGCGGAAGGTAGCTAGCTT 60.976 55.000 32.56 32.56 45.70 3.74
2600 2875 0.976073 TTGGCGGAAGGTAGCTAGCT 60.976 55.000 23.12 23.12 35.17 3.32
2601 2876 0.107848 TTTGGCGGAAGGTAGCTAGC 60.108 55.000 15.19 15.19 0.00 3.42
2602 2877 2.158957 TCATTTGGCGGAAGGTAGCTAG 60.159 50.000 0.00 0.00 0.00 3.42
2603 2878 1.834896 TCATTTGGCGGAAGGTAGCTA 59.165 47.619 0.00 0.00 0.00 3.32
2604 2879 0.618458 TCATTTGGCGGAAGGTAGCT 59.382 50.000 0.00 0.00 0.00 3.32
2605 2880 1.459450 TTCATTTGGCGGAAGGTAGC 58.541 50.000 0.00 0.00 0.00 3.58
2606 2881 3.694072 TCATTTCATTTGGCGGAAGGTAG 59.306 43.478 0.00 0.00 0.00 3.18
2607 2882 3.691575 TCATTTCATTTGGCGGAAGGTA 58.308 40.909 0.00 0.00 0.00 3.08
2608 2883 2.524306 TCATTTCATTTGGCGGAAGGT 58.476 42.857 0.00 0.00 0.00 3.50
2609 2884 3.514645 CTTCATTTCATTTGGCGGAAGG 58.485 45.455 0.00 0.00 0.00 3.46
2610 2885 2.925563 GCTTCATTTCATTTGGCGGAAG 59.074 45.455 0.00 0.00 34.81 3.46
2611 2886 2.298446 TGCTTCATTTCATTTGGCGGAA 59.702 40.909 0.00 0.00 0.00 4.30
2612 2887 1.891811 TGCTTCATTTCATTTGGCGGA 59.108 42.857 0.00 0.00 0.00 5.54
2613 2888 2.367030 TGCTTCATTTCATTTGGCGG 57.633 45.000 0.00 0.00 0.00 6.13
2614 2889 4.932268 AAATGCTTCATTTCATTTGGCG 57.068 36.364 0.00 0.00 39.50 5.69
2618 2893 9.550406 TTTCTCTTCAAATGCTTCATTTCATTT 57.450 25.926 2.13 0.00 41.40 2.32
2619 2894 9.550406 TTTTCTCTTCAAATGCTTCATTTCATT 57.450 25.926 2.13 0.00 41.40 2.57
2620 2895 9.550406 TTTTTCTCTTCAAATGCTTCATTTCAT 57.450 25.926 2.13 0.00 41.40 2.57
2621 2896 8.945481 TTTTTCTCTTCAAATGCTTCATTTCA 57.055 26.923 2.13 0.00 41.40 2.69
2643 2918 8.667463 CCACTCAATCACTTTGTTTCAATTTTT 58.333 29.630 0.00 0.00 36.65 1.94
2644 2919 7.201635 GCCACTCAATCACTTTGTTTCAATTTT 60.202 33.333 0.00 0.00 36.65 1.82
2645 2920 6.258507 GCCACTCAATCACTTTGTTTCAATTT 59.741 34.615 0.00 0.00 36.65 1.82
2646 2921 5.754890 GCCACTCAATCACTTTGTTTCAATT 59.245 36.000 0.00 0.00 36.65 2.32
2647 2922 5.069516 AGCCACTCAATCACTTTGTTTCAAT 59.930 36.000 0.00 0.00 36.65 2.57
2648 2923 4.402155 AGCCACTCAATCACTTTGTTTCAA 59.598 37.500 0.00 0.00 36.65 2.69
2649 2924 3.953612 AGCCACTCAATCACTTTGTTTCA 59.046 39.130 0.00 0.00 36.65 2.69
2650 2925 4.574599 AGCCACTCAATCACTTTGTTTC 57.425 40.909 0.00 0.00 36.65 2.78
2651 2926 5.343307 AAAGCCACTCAATCACTTTGTTT 57.657 34.783 0.00 0.00 36.65 2.83
2652 2927 4.498009 CGAAAGCCACTCAATCACTTTGTT 60.498 41.667 0.00 0.00 36.65 2.83
2653 2928 3.003689 CGAAAGCCACTCAATCACTTTGT 59.996 43.478 0.00 0.00 36.65 2.83
2654 2929 3.558505 CGAAAGCCACTCAATCACTTTG 58.441 45.455 0.00 0.00 36.61 2.77
2655 2930 3.904136 CGAAAGCCACTCAATCACTTT 57.096 42.857 0.00 0.00 33.45 2.66
2670 2945 2.088969 GCATGCTTAACGTTTGCGAAAG 59.911 45.455 11.37 4.62 42.00 2.62
2671 2946 2.047769 GCATGCTTAACGTTTGCGAAA 58.952 42.857 11.37 0.00 42.00 3.46
2672 2947 1.265635 AGCATGCTTAACGTTTGCGAA 59.734 42.857 16.30 0.00 42.00 4.70
2673 2948 0.871722 AGCATGCTTAACGTTTGCGA 59.128 45.000 16.30 3.69 42.00 5.10
2674 2949 2.519002 TAGCATGCTTAACGTTTGCG 57.481 45.000 28.02 1.62 44.93 4.85
2675 2950 5.095490 AGAATTAGCATGCTTAACGTTTGC 58.905 37.500 28.02 10.19 0.00 3.68
2676 2951 6.251376 GGAAGAATTAGCATGCTTAACGTTTG 59.749 38.462 28.02 0.00 26.66 2.93
2677 2952 6.322491 GGAAGAATTAGCATGCTTAACGTTT 58.678 36.000 28.02 13.47 26.66 3.60
2678 2953 5.447279 CGGAAGAATTAGCATGCTTAACGTT 60.447 40.000 28.02 14.28 26.66 3.99
2679 2954 4.034048 CGGAAGAATTAGCATGCTTAACGT 59.966 41.667 28.02 13.22 26.66 3.99
2680 2955 4.518217 CGGAAGAATTAGCATGCTTAACG 58.482 43.478 28.02 14.79 26.66 3.18
2681 2956 4.035675 AGCGGAAGAATTAGCATGCTTAAC 59.964 41.667 28.02 14.93 34.77 2.01
2682 2957 4.199310 AGCGGAAGAATTAGCATGCTTAA 58.801 39.130 28.02 17.49 34.77 1.85
2683 2958 3.808728 AGCGGAAGAATTAGCATGCTTA 58.191 40.909 28.02 18.49 34.77 3.09
2684 2959 2.648059 AGCGGAAGAATTAGCATGCTT 58.352 42.857 28.02 8.04 34.77 3.91
2685 2960 2.338577 AGCGGAAGAATTAGCATGCT 57.661 45.000 25.99 25.99 34.77 3.79
2686 2961 4.282873 GTTTAGCGGAAGAATTAGCATGC 58.717 43.478 10.51 10.51 34.77 4.06
2687 2962 4.261197 GGGTTTAGCGGAAGAATTAGCATG 60.261 45.833 0.00 0.00 34.77 4.06
2688 2963 3.883489 GGGTTTAGCGGAAGAATTAGCAT 59.117 43.478 0.00 0.00 34.77 3.79
2689 2964 3.275999 GGGTTTAGCGGAAGAATTAGCA 58.724 45.455 0.00 0.00 34.77 3.49
2690 2965 2.617308 GGGGTTTAGCGGAAGAATTAGC 59.383 50.000 0.00 0.00 32.86 3.09
2691 2966 3.626217 GTGGGGTTTAGCGGAAGAATTAG 59.374 47.826 0.00 0.00 0.00 1.73
2692 2967 3.264964 AGTGGGGTTTAGCGGAAGAATTA 59.735 43.478 0.00 0.00 0.00 1.40
2693 2968 2.041216 AGTGGGGTTTAGCGGAAGAATT 59.959 45.455 0.00 0.00 0.00 2.17
2694 2969 1.633945 AGTGGGGTTTAGCGGAAGAAT 59.366 47.619 0.00 0.00 0.00 2.40
2695 2970 1.061546 AGTGGGGTTTAGCGGAAGAA 58.938 50.000 0.00 0.00 0.00 2.52
2696 2971 1.829222 CTAGTGGGGTTTAGCGGAAGA 59.171 52.381 0.00 0.00 0.00 2.87
2697 2972 1.553704 ACTAGTGGGGTTTAGCGGAAG 59.446 52.381 0.00 0.00 0.00 3.46
2698 2973 1.648116 ACTAGTGGGGTTTAGCGGAA 58.352 50.000 0.00 0.00 0.00 4.30
2699 2974 2.025037 TCTACTAGTGGGGTTTAGCGGA 60.025 50.000 5.39 0.00 0.00 5.54
2700 2975 2.381911 TCTACTAGTGGGGTTTAGCGG 58.618 52.381 5.39 0.00 0.00 5.52
2701 2976 4.460948 TTTCTACTAGTGGGGTTTAGCG 57.539 45.455 5.39 0.00 0.00 4.26
2702 2977 5.646793 CCTTTTTCTACTAGTGGGGTTTAGC 59.353 44.000 5.39 0.00 0.00 3.09
2703 2978 6.178324 CCCTTTTTCTACTAGTGGGGTTTAG 58.822 44.000 5.39 0.00 0.00 1.85
2704 2979 5.014438 CCCCTTTTTCTACTAGTGGGGTTTA 59.986 44.000 18.97 0.00 45.71 2.01
2705 2980 4.202641 CCCCTTTTTCTACTAGTGGGGTTT 60.203 45.833 18.97 0.00 45.71 3.27
2706 2981 3.332783 CCCCTTTTTCTACTAGTGGGGTT 59.667 47.826 18.97 0.00 45.71 4.11
2707 2982 2.917600 CCCCTTTTTCTACTAGTGGGGT 59.082 50.000 18.97 0.00 45.71 4.95
2708 2983 3.646736 CCCCTTTTTCTACTAGTGGGG 57.353 52.381 14.99 14.99 45.60 4.96
2709 2984 2.356844 GCCCCCTTTTTCTACTAGTGGG 60.357 54.545 5.39 5.39 0.00 4.61
2771 3046 1.682849 CCATTGGTCCCGGTTCTGA 59.317 57.895 0.00 0.00 0.00 3.27
2841 3116 1.280998 CATGAACCGGGACTAAAGGGT 59.719 52.381 6.32 0.00 0.00 4.34
2934 3217 2.355412 GCCATGAACCGGTACTAAAGGT 60.355 50.000 8.00 0.00 40.50 3.50
2935 3218 2.285977 GCCATGAACCGGTACTAAAGG 58.714 52.381 8.00 6.95 0.00 3.11
2936 3219 2.676342 GTGCCATGAACCGGTACTAAAG 59.324 50.000 8.00 0.00 36.33 1.85
2937 3220 2.702261 GTGCCATGAACCGGTACTAAA 58.298 47.619 8.00 0.00 36.33 1.85
2999 3286 1.149854 GAAAAGGTGGTCCACGGGT 59.850 57.895 15.93 0.06 34.83 5.28
3163 3480 7.624360 TCCGAGTTCATATGCAAAAGTTATT 57.376 32.000 0.00 0.00 0.00 1.40
3255 3572 7.669427 TGAGGATTCTACAAATTTGCAAACAT 58.331 30.769 15.41 3.53 0.00 2.71
3339 3660 3.821033 AGTTTGACCATAGTTTGACCAGC 59.179 43.478 0.00 0.00 0.00 4.85
3458 3791 4.142182 CCATTGTTTGACCACAGTTTGACT 60.142 41.667 0.00 0.00 0.00 3.41
3535 3881 9.299963 TCACTGTTTGAATTTGAAACTATTGTG 57.700 29.630 11.80 13.28 34.88 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.