Multiple sequence alignment - TraesCS5A01G286900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G286900 chr5A 100.000 3803 0 0 1 3803 494879415 494875613 0.000000e+00 7023.0
1 TraesCS5A01G286900 chr5A 96.707 1913 56 5 899 2805 494972491 494974402 0.000000e+00 3177.0
2 TraesCS5A01G286900 chr5B 89.564 3028 210 45 838 3802 471919161 471916177 0.000000e+00 3744.0
3 TraesCS5A01G286900 chr5B 92.514 1977 110 29 836 2805 472068842 472070787 0.000000e+00 2796.0
4 TraesCS5A01G286900 chr5B 87.810 525 49 6 1 511 705022317 705021794 5.440000e-168 601.0
5 TraesCS5A01G286900 chr5B 82.707 532 62 15 1 511 44469119 44469641 2.700000e-121 446.0
6 TraesCS5A01G286900 chr5B 81.006 537 65 19 1 511 409568783 409568258 3.560000e-105 392.0
7 TraesCS5A01G286900 chr5B 89.399 283 15 6 568 840 471923624 471923347 3.640000e-90 342.0
8 TraesCS5A01G286900 chr5B 80.142 141 22 6 3062 3198 600642888 600643026 2.420000e-17 100.0
9 TraesCS5A01G286900 chr5B 100.000 43 0 0 531 573 471930145 471930103 3.150000e-11 80.5
10 TraesCS5A01G286900 chr5D 93.240 1938 95 23 897 2805 391782005 391783935 0.000000e+00 2820.0
11 TraesCS5A01G286900 chr5D 83.844 588 68 10 3216 3802 391759436 391758875 5.590000e-148 534.0
12 TraesCS5A01G286900 chr5D 92.140 229 18 0 2577 2805 391785078 391785306 1.320000e-84 324.0
13 TraesCS5A01G286900 chr5D 80.000 140 24 4 3062 3198 487982480 487982618 2.420000e-17 100.0
14 TraesCS5A01G286900 chr2A 91.255 526 30 4 1 511 749445520 749446044 0.000000e+00 702.0
15 TraesCS5A01G286900 chr2A 88.762 525 44 3 1 511 763478412 763478935 2.490000e-176 628.0
16 TraesCS5A01G286900 chr2A 90.000 70 7 0 3040 3109 121228960 121229029 1.450000e-14 91.6
17 TraesCS5A01G286900 chr7B 93.562 466 25 4 1567 2032 588068990 588068530 0.000000e+00 689.0
18 TraesCS5A01G286900 chr7B 91.942 484 33 2 2033 2510 588067202 588066719 0.000000e+00 673.0
19 TraesCS5A01G286900 chr7B 81.308 535 66 18 1 511 713593433 713593957 1.650000e-108 403.0
20 TraesCS5A01G286900 chr7B 86.190 210 14 3 1 197 434492023 434491816 2.980000e-51 213.0
21 TraesCS5A01G286900 chr6A 89.866 523 37 7 3 511 58034888 58034368 0.000000e+00 658.0
22 TraesCS5A01G286900 chr6A 88.952 525 43 3 1 511 144258005 144257482 5.360000e-178 634.0
23 TraesCS5A01G286900 chr1A 89.714 525 38 7 1 511 463925710 463926232 0.000000e+00 656.0
24 TraesCS5A01G286900 chr1A 89.524 525 40 3 1 511 520873077 520873600 0.000000e+00 651.0
25 TraesCS5A01G286900 chr1A 89.143 525 42 6 1 511 436451881 436451358 1.150000e-179 640.0
26 TraesCS5A01G286900 chr3B 89.524 525 40 3 1 511 245976175 245976698 0.000000e+00 651.0
27 TraesCS5A01G286900 chr3B 86.832 524 54 2 1 511 498460108 498459587 4.260000e-159 571.0
28 TraesCS5A01G286900 chr3B 83.037 507 47 13 1 492 819310255 819309773 1.260000e-114 424.0
29 TraesCS5A01G286900 chr3B 83.251 203 19 3 1 189 759957985 759957784 5.050000e-39 172.0
30 TraesCS5A01G286900 chr6B 87.977 524 47 3 1 511 498854072 498853552 4.200000e-169 604.0
31 TraesCS5A01G286900 chr4B 83.256 215 21 3 1 201 141251560 141251773 2.330000e-42 183.0
32 TraesCS5A01G286900 chr2D 89.706 68 7 0 3040 3107 119303865 119303932 1.880000e-13 87.9
33 TraesCS5A01G286900 chr2D 80.682 88 13 4 3608 3693 420903569 420903654 8.820000e-07 65.8
34 TraesCS5A01G286900 chr1D 88.732 71 8 0 3040 3110 486141133 486141063 1.880000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G286900 chr5A 494875613 494879415 3802 True 7023 7023 100.000 1 3803 1 chr5A.!!$R1 3802
1 TraesCS5A01G286900 chr5A 494972491 494974402 1911 False 3177 3177 96.707 899 2805 1 chr5A.!!$F1 1906
2 TraesCS5A01G286900 chr5B 471916177 471919161 2984 True 3744 3744 89.564 838 3802 1 chr5B.!!$R2 2964
3 TraesCS5A01G286900 chr5B 472068842 472070787 1945 False 2796 2796 92.514 836 2805 1 chr5B.!!$F2 1969
4 TraesCS5A01G286900 chr5B 705021794 705022317 523 True 601 601 87.810 1 511 1 chr5B.!!$R5 510
5 TraesCS5A01G286900 chr5B 44469119 44469641 522 False 446 446 82.707 1 511 1 chr5B.!!$F1 510
6 TraesCS5A01G286900 chr5B 409568258 409568783 525 True 392 392 81.006 1 511 1 chr5B.!!$R1 510
7 TraesCS5A01G286900 chr5D 391782005 391785306 3301 False 1572 2820 92.690 897 2805 2 chr5D.!!$F2 1908
8 TraesCS5A01G286900 chr5D 391758875 391759436 561 True 534 534 83.844 3216 3802 1 chr5D.!!$R1 586
9 TraesCS5A01G286900 chr2A 749445520 749446044 524 False 702 702 91.255 1 511 1 chr2A.!!$F2 510
10 TraesCS5A01G286900 chr2A 763478412 763478935 523 False 628 628 88.762 1 511 1 chr2A.!!$F3 510
11 TraesCS5A01G286900 chr7B 588066719 588068990 2271 True 681 689 92.752 1567 2510 2 chr7B.!!$R2 943
12 TraesCS5A01G286900 chr7B 713593433 713593957 524 False 403 403 81.308 1 511 1 chr7B.!!$F1 510
13 TraesCS5A01G286900 chr6A 58034368 58034888 520 True 658 658 89.866 3 511 1 chr6A.!!$R1 508
14 TraesCS5A01G286900 chr6A 144257482 144258005 523 True 634 634 88.952 1 511 1 chr6A.!!$R2 510
15 TraesCS5A01G286900 chr1A 463925710 463926232 522 False 656 656 89.714 1 511 1 chr1A.!!$F1 510
16 TraesCS5A01G286900 chr1A 520873077 520873600 523 False 651 651 89.524 1 511 1 chr1A.!!$F2 510
17 TraesCS5A01G286900 chr1A 436451358 436451881 523 True 640 640 89.143 1 511 1 chr1A.!!$R1 510
18 TraesCS5A01G286900 chr3B 245976175 245976698 523 False 651 651 89.524 1 511 1 chr3B.!!$F1 510
19 TraesCS5A01G286900 chr3B 498459587 498460108 521 True 571 571 86.832 1 511 1 chr3B.!!$R1 510
20 TraesCS5A01G286900 chr6B 498853552 498854072 520 True 604 604 87.977 1 511 1 chr6B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 859 0.035458 CTTGTTGAACTCGCCTCCCT 59.965 55.0 0.00 0.00 0.00 4.20 F
801 873 0.108138 CTCCCTTGGAACGATTCGCT 60.108 55.0 5.86 0.00 0.00 4.93 F
802 874 0.108329 TCCCTTGGAACGATTCGCTC 60.108 55.0 5.86 3.16 0.00 5.03 F
2781 4272 0.322456 CGTCCATCATGGGTTGTGGT 60.322 55.0 3.05 0.00 38.32 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 3735 1.199615 TGAGGGACACGCCATTGATA 58.800 50.000 0.0 0.0 38.95 2.15 R
2781 4272 1.304381 GTGCAGCCCCTTGGATTGA 60.304 57.895 0.0 0.0 0.00 2.57 R
2783 4274 1.304713 CAGTGCAGCCCCTTGGATT 60.305 57.895 0.0 0.0 0.00 3.01 R
3721 5636 1.064611 TCTTCCAACGAAACCCCACAA 60.065 47.619 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 90 1.180029 AGAAACGCCGAGGTAGCTAA 58.820 50.000 0.00 0.00 0.00 3.09
87 101 4.036027 CCGAGGTAGCTAACGTTTCTGATA 59.964 45.833 5.91 0.00 0.00 2.15
189 206 3.257935 CCAAGGAACCATGGCGTTA 57.742 52.632 13.04 0.00 0.00 3.18
266 333 6.209192 ACATTCTACATGCACATGAAAAAGGA 59.791 34.615 17.19 4.52 41.20 3.36
274 341 4.280425 TGCACATGAAAAAGGATAGCAACA 59.720 37.500 0.00 0.00 0.00 3.33
368 439 0.037232 AGCTAGCTCGGCGTTTCTTT 60.037 50.000 12.68 0.00 34.52 2.52
369 440 0.796927 GCTAGCTCGGCGTTTCTTTT 59.203 50.000 7.70 0.00 0.00 2.27
445 517 0.591170 GCTGTGGCGTTGCTAAAAGA 59.409 50.000 0.00 0.00 0.00 2.52
462 534 7.981789 TGCTAAAAGAGTCAGATCGTGAAATAT 59.018 33.333 0.00 0.00 36.74 1.28
511 583 6.183360 ACAAAGTTCATTCAAAGGGTCAGAAG 60.183 38.462 0.00 0.00 0.00 2.85
512 584 4.401925 AGTTCATTCAAAGGGTCAGAAGG 58.598 43.478 0.00 0.00 0.00 3.46
513 585 2.795329 TCATTCAAAGGGTCAGAAGGC 58.205 47.619 0.00 0.00 0.00 4.35
514 586 1.821136 CATTCAAAGGGTCAGAAGGCC 59.179 52.381 0.00 0.00 0.00 5.19
515 587 0.112412 TTCAAAGGGTCAGAAGGCCC 59.888 55.000 0.00 0.00 45.16 5.80
519 591 4.048470 GGGTCAGAAGGCCCACCC 62.048 72.222 0.00 3.66 44.23 4.61
520 592 4.048470 GGTCAGAAGGCCCACCCC 62.048 72.222 0.00 0.00 36.11 4.95
521 593 3.256960 GTCAGAAGGCCCACCCCA 61.257 66.667 0.00 0.00 36.11 4.96
522 594 2.204291 TCAGAAGGCCCACCCCAT 60.204 61.111 0.00 0.00 36.11 4.00
523 595 2.276740 CAGAAGGCCCACCCCATC 59.723 66.667 0.00 0.00 36.11 3.51
524 596 2.204291 AGAAGGCCCACCCCATCA 60.204 61.111 0.00 0.00 36.11 3.07
525 597 2.276740 GAAGGCCCACCCCATCAG 59.723 66.667 0.00 0.00 36.11 2.90
526 598 4.066139 AAGGCCCACCCCATCAGC 62.066 66.667 0.00 0.00 36.11 4.26
528 600 4.380945 GGCCCACCCCATCAGCAA 62.381 66.667 0.00 0.00 0.00 3.91
529 601 2.042639 GCCCACCCCATCAGCAAT 60.043 61.111 0.00 0.00 0.00 3.56
530 602 1.229927 GCCCACCCCATCAGCAATA 59.770 57.895 0.00 0.00 0.00 1.90
531 603 0.178953 GCCCACCCCATCAGCAATAT 60.179 55.000 0.00 0.00 0.00 1.28
532 604 1.915141 CCCACCCCATCAGCAATATC 58.085 55.000 0.00 0.00 0.00 1.63
533 605 1.527034 CCACCCCATCAGCAATATCG 58.473 55.000 0.00 0.00 0.00 2.92
534 606 1.527034 CACCCCATCAGCAATATCGG 58.473 55.000 0.00 0.00 0.00 4.18
535 607 0.250901 ACCCCATCAGCAATATCGGC 60.251 55.000 0.00 0.00 0.00 5.54
536 608 0.250858 CCCCATCAGCAATATCGGCA 60.251 55.000 2.61 0.00 0.00 5.69
537 609 0.877071 CCCATCAGCAATATCGGCAC 59.123 55.000 2.61 0.00 0.00 5.01
538 610 0.877071 CCATCAGCAATATCGGCACC 59.123 55.000 2.61 0.00 0.00 5.01
539 611 0.514255 CATCAGCAATATCGGCACCG 59.486 55.000 1.73 1.73 41.35 4.94
540 612 0.603707 ATCAGCAATATCGGCACCGG 60.604 55.000 9.58 0.00 40.25 5.28
541 613 1.227527 CAGCAATATCGGCACCGGA 60.228 57.895 9.46 0.00 40.25 5.14
542 614 0.813610 CAGCAATATCGGCACCGGAA 60.814 55.000 9.46 0.00 40.25 4.30
543 615 0.107410 AGCAATATCGGCACCGGAAA 60.107 50.000 9.46 0.00 40.25 3.13
544 616 0.736053 GCAATATCGGCACCGGAAAA 59.264 50.000 9.46 0.00 40.25 2.29
545 617 1.268539 GCAATATCGGCACCGGAAAAG 60.269 52.381 9.46 0.00 40.25 2.27
546 618 1.021968 AATATCGGCACCGGAAAAGC 58.978 50.000 9.46 6.41 40.25 3.51
547 619 0.180406 ATATCGGCACCGGAAAAGCT 59.820 50.000 9.46 0.00 40.25 3.74
548 620 0.742990 TATCGGCACCGGAAAAGCTG 60.743 55.000 9.46 11.91 40.25 4.24
549 621 4.404654 CGGCACCGGAAAAGCTGC 62.405 66.667 9.46 6.11 35.56 5.25
550 622 3.294493 GGCACCGGAAAAGCTGCA 61.294 61.111 9.46 0.00 0.00 4.41
551 623 2.639327 GGCACCGGAAAAGCTGCAT 61.639 57.895 9.46 0.00 0.00 3.96
552 624 1.444895 GCACCGGAAAAGCTGCATG 60.445 57.895 9.46 0.00 0.00 4.06
553 625 1.444895 CACCGGAAAAGCTGCATGC 60.445 57.895 9.46 11.82 43.29 4.06
554 626 1.902918 ACCGGAAAAGCTGCATGCA 60.903 52.632 21.29 21.29 45.94 3.96
555 627 1.252904 ACCGGAAAAGCTGCATGCAT 61.253 50.000 22.97 5.46 45.94 3.96
556 628 0.804544 CCGGAAAAGCTGCATGCATG 60.805 55.000 22.97 22.70 45.94 4.06
571 643 4.662023 ATGCATGCATGGTCGGAA 57.338 50.000 31.74 1.06 35.03 4.30
572 644 3.120796 ATGCATGCATGGTCGGAAT 57.879 47.368 31.74 5.52 35.03 3.01
573 645 0.956633 ATGCATGCATGGTCGGAATC 59.043 50.000 31.74 9.08 35.03 2.52
574 646 1.102809 TGCATGCATGGTCGGAATCC 61.103 55.000 27.34 8.37 0.00 3.01
585 657 3.290776 CGGAATCCGTCTTCCATCC 57.709 57.895 14.46 0.00 44.18 3.51
586 658 0.464036 CGGAATCCGTCTTCCATCCA 59.536 55.000 14.46 0.00 44.18 3.41
587 659 1.806623 CGGAATCCGTCTTCCATCCAC 60.807 57.143 14.46 0.00 44.18 4.02
588 660 1.571919 GAATCCGTCTTCCATCCACG 58.428 55.000 0.00 0.00 0.00 4.94
589 661 0.902531 AATCCGTCTTCCATCCACGT 59.097 50.000 0.00 0.00 0.00 4.49
590 662 0.460311 ATCCGTCTTCCATCCACGTC 59.540 55.000 0.00 0.00 0.00 4.34
591 663 1.516386 CCGTCTTCCATCCACGTCG 60.516 63.158 0.00 0.00 0.00 5.12
592 664 2.158959 CGTCTTCCATCCACGTCGC 61.159 63.158 0.00 0.00 0.00 5.19
593 665 1.215647 GTCTTCCATCCACGTCGCT 59.784 57.895 0.00 0.00 0.00 4.93
594 666 0.802607 GTCTTCCATCCACGTCGCTC 60.803 60.000 0.00 0.00 0.00 5.03
595 667 1.519455 CTTCCATCCACGTCGCTCC 60.519 63.158 0.00 0.00 0.00 4.70
596 668 1.949847 CTTCCATCCACGTCGCTCCT 61.950 60.000 0.00 0.00 0.00 3.69
597 669 1.945354 TTCCATCCACGTCGCTCCTC 61.945 60.000 0.00 0.00 0.00 3.71
598 670 2.278206 CATCCACGTCGCTCCTCG 60.278 66.667 0.00 0.00 40.15 4.63
599 671 2.437895 ATCCACGTCGCTCCTCGA 60.438 61.111 0.00 0.00 46.29 4.04
622 694 3.923614 GGCGATCGACCGATTCTG 58.076 61.111 21.57 1.90 34.60 3.02
623 695 1.065928 GGCGATCGACCGATTCTGT 59.934 57.895 21.57 0.00 34.60 3.41
624 696 0.309922 GGCGATCGACCGATTCTGTA 59.690 55.000 21.57 0.00 34.60 2.74
625 697 1.268896 GGCGATCGACCGATTCTGTAA 60.269 52.381 21.57 0.00 34.60 2.41
626 698 2.607282 GGCGATCGACCGATTCTGTAAT 60.607 50.000 21.57 0.00 34.60 1.89
627 699 2.405357 GCGATCGACCGATTCTGTAATG 59.595 50.000 21.57 0.00 34.60 1.90
628 700 3.629058 CGATCGACCGATTCTGTAATGT 58.371 45.455 10.26 0.00 34.60 2.71
629 701 3.422217 CGATCGACCGATTCTGTAATGTG 59.578 47.826 10.26 0.00 34.60 3.21
630 702 3.861276 TCGACCGATTCTGTAATGTGT 57.139 42.857 0.00 0.00 0.00 3.72
631 703 3.507786 TCGACCGATTCTGTAATGTGTG 58.492 45.455 0.00 0.00 0.00 3.82
632 704 3.057104 TCGACCGATTCTGTAATGTGTGT 60.057 43.478 0.00 0.00 0.00 3.72
633 705 3.678072 CGACCGATTCTGTAATGTGTGTT 59.322 43.478 0.00 0.00 0.00 3.32
634 706 4.151689 CGACCGATTCTGTAATGTGTGTTT 59.848 41.667 0.00 0.00 0.00 2.83
635 707 5.356882 ACCGATTCTGTAATGTGTGTTTG 57.643 39.130 0.00 0.00 0.00 2.93
636 708 4.215399 ACCGATTCTGTAATGTGTGTTTGG 59.785 41.667 0.00 0.00 0.00 3.28
637 709 4.215399 CCGATTCTGTAATGTGTGTTTGGT 59.785 41.667 0.00 0.00 0.00 3.67
638 710 5.278266 CCGATTCTGTAATGTGTGTTTGGTT 60.278 40.000 0.00 0.00 0.00 3.67
639 711 5.624900 CGATTCTGTAATGTGTGTTTGGTTG 59.375 40.000 0.00 0.00 0.00 3.77
640 712 4.300189 TCTGTAATGTGTGTTTGGTTGC 57.700 40.909 0.00 0.00 0.00 4.17
641 713 3.951037 TCTGTAATGTGTGTTTGGTTGCT 59.049 39.130 0.00 0.00 0.00 3.91
642 714 4.400884 TCTGTAATGTGTGTTTGGTTGCTT 59.599 37.500 0.00 0.00 0.00 3.91
643 715 4.428209 TGTAATGTGTGTTTGGTTGCTTG 58.572 39.130 0.00 0.00 0.00 4.01
644 716 1.938625 ATGTGTGTTTGGTTGCTTGC 58.061 45.000 0.00 0.00 0.00 4.01
645 717 0.605083 TGTGTGTTTGGTTGCTTGCA 59.395 45.000 0.00 0.00 0.00 4.08
646 718 0.998669 GTGTGTTTGGTTGCTTGCAC 59.001 50.000 0.00 0.00 0.00 4.57
647 719 0.894141 TGTGTTTGGTTGCTTGCACT 59.106 45.000 0.00 0.00 0.00 4.40
648 720 1.280066 GTGTTTGGTTGCTTGCACTG 58.720 50.000 0.00 0.00 0.00 3.66
649 721 0.459934 TGTTTGGTTGCTTGCACTGC 60.460 50.000 4.10 4.10 0.00 4.40
650 722 0.459934 GTTTGGTTGCTTGCACTGCA 60.460 50.000 9.23 9.23 38.80 4.41
651 723 0.179105 TTTGGTTGCTTGCACTGCAG 60.179 50.000 13.48 13.48 40.61 4.41
652 724 2.355481 GGTTGCTTGCACTGCAGC 60.355 61.111 15.27 15.95 40.61 5.25
653 725 2.355481 GTTGCTTGCACTGCAGCC 60.355 61.111 15.27 5.76 40.61 4.85
654 726 2.834043 TTGCTTGCACTGCAGCCA 60.834 55.556 15.27 8.74 40.61 4.75
655 727 2.204461 TTGCTTGCACTGCAGCCAT 61.204 52.632 15.27 0.00 40.61 4.40
656 728 2.149803 TTGCTTGCACTGCAGCCATC 62.150 55.000 15.27 7.13 40.61 3.51
657 729 2.483745 CTTGCACTGCAGCCATCG 59.516 61.111 15.27 2.37 40.61 3.84
658 730 3.047718 CTTGCACTGCAGCCATCGG 62.048 63.158 15.27 0.00 40.61 4.18
676 748 4.547859 GCAGAGGCCGTGATTCAT 57.452 55.556 12.02 0.00 0.00 2.57
677 749 2.315246 GCAGAGGCCGTGATTCATC 58.685 57.895 12.02 0.00 0.00 2.92
678 750 0.462581 GCAGAGGCCGTGATTCATCA 60.463 55.000 12.02 0.00 0.00 3.07
679 751 2.013563 GCAGAGGCCGTGATTCATCAA 61.014 52.381 12.02 0.00 38.75 2.57
680 752 1.667724 CAGAGGCCGTGATTCATCAAC 59.332 52.381 0.00 0.00 38.75 3.18
681 753 0.652592 GAGGCCGTGATTCATCAACG 59.347 55.000 0.00 0.00 38.75 4.10
682 754 0.036388 AGGCCGTGATTCATCAACGT 60.036 50.000 0.00 0.00 38.75 3.99
683 755 0.096976 GGCCGTGATTCATCAACGTG 59.903 55.000 0.00 0.00 38.75 4.49
684 756 0.521242 GCCGTGATTCATCAACGTGC 60.521 55.000 0.00 1.80 38.75 5.34
685 757 1.078709 CCGTGATTCATCAACGTGCT 58.921 50.000 0.00 0.00 38.75 4.40
686 758 1.464608 CCGTGATTCATCAACGTGCTT 59.535 47.619 0.00 0.00 38.75 3.91
687 759 2.474526 CCGTGATTCATCAACGTGCTTC 60.475 50.000 0.00 0.00 38.75 3.86
688 760 2.157474 CGTGATTCATCAACGTGCTTCA 59.843 45.455 0.00 0.00 38.75 3.02
689 761 3.722957 CGTGATTCATCAACGTGCTTCAG 60.723 47.826 0.00 0.00 38.75 3.02
690 762 3.433274 GTGATTCATCAACGTGCTTCAGA 59.567 43.478 0.00 0.00 38.75 3.27
691 763 4.093998 GTGATTCATCAACGTGCTTCAGAT 59.906 41.667 0.00 0.00 38.75 2.90
692 764 5.291858 GTGATTCATCAACGTGCTTCAGATA 59.708 40.000 0.00 0.00 38.75 1.98
693 765 6.018425 GTGATTCATCAACGTGCTTCAGATAT 60.018 38.462 0.00 0.00 38.75 1.63
694 766 7.169813 GTGATTCATCAACGTGCTTCAGATATA 59.830 37.037 0.00 0.00 38.75 0.86
695 767 7.874528 TGATTCATCAACGTGCTTCAGATATAT 59.125 33.333 0.00 0.00 33.08 0.86
696 768 9.358872 GATTCATCAACGTGCTTCAGATATATA 57.641 33.333 0.00 0.00 0.00 0.86
697 769 8.520835 TTCATCAACGTGCTTCAGATATATAC 57.479 34.615 0.00 0.00 0.00 1.47
698 770 7.886338 TCATCAACGTGCTTCAGATATATACT 58.114 34.615 0.00 0.00 0.00 2.12
699 771 8.360390 TCATCAACGTGCTTCAGATATATACTT 58.640 33.333 0.00 0.00 0.00 2.24
700 772 7.930513 TCAACGTGCTTCAGATATATACTTG 57.069 36.000 0.00 0.00 0.00 3.16
701 773 6.420903 TCAACGTGCTTCAGATATATACTTGC 59.579 38.462 0.00 0.00 0.00 4.01
702 774 5.842907 ACGTGCTTCAGATATATACTTGCA 58.157 37.500 0.00 0.00 0.00 4.08
703 775 6.280643 ACGTGCTTCAGATATATACTTGCAA 58.719 36.000 0.00 0.00 0.00 4.08
704 776 6.422100 ACGTGCTTCAGATATATACTTGCAAG 59.578 38.462 24.84 24.84 34.61 4.01
705 777 6.422100 CGTGCTTCAGATATATACTTGCAAGT 59.578 38.462 32.97 32.97 42.91 3.16
706 778 7.042456 CGTGCTTCAGATATATACTTGCAAGTT 60.042 37.037 35.20 23.78 40.37 2.66
707 779 8.066595 GTGCTTCAGATATATACTTGCAAGTTG 58.933 37.037 35.20 24.46 40.37 3.16
708 780 7.074502 GCTTCAGATATATACTTGCAAGTTGC 58.925 38.462 35.20 21.17 45.29 4.17
723 795 6.144577 GCAAGTTGCATTTCAATAGTTGTC 57.855 37.500 22.90 0.00 44.26 3.18
724 796 5.922544 GCAAGTTGCATTTCAATAGTTGTCT 59.077 36.000 22.90 0.00 44.26 3.41
725 797 6.088616 GCAAGTTGCATTTCAATAGTTGTCTC 59.911 38.462 22.90 0.00 44.26 3.36
726 798 5.931532 AGTTGCATTTCAATAGTTGTCTCG 58.068 37.500 0.00 0.00 36.99 4.04
727 799 5.470098 AGTTGCATTTCAATAGTTGTCTCGT 59.530 36.000 0.00 0.00 36.99 4.18
728 800 5.530519 TGCATTTCAATAGTTGTCTCGTC 57.469 39.130 0.00 0.00 0.00 4.20
729 801 4.994217 TGCATTTCAATAGTTGTCTCGTCA 59.006 37.500 0.00 0.00 0.00 4.35
730 802 5.643348 TGCATTTCAATAGTTGTCTCGTCAT 59.357 36.000 0.00 0.00 0.00 3.06
731 803 6.183360 TGCATTTCAATAGTTGTCTCGTCATC 60.183 38.462 0.00 0.00 0.00 2.92
732 804 6.709643 CATTTCAATAGTTGTCTCGTCATCC 58.290 40.000 0.00 0.00 0.00 3.51
733 805 5.661056 TTCAATAGTTGTCTCGTCATCCT 57.339 39.130 0.00 0.00 0.00 3.24
734 806 5.250235 TCAATAGTTGTCTCGTCATCCTC 57.750 43.478 0.00 0.00 0.00 3.71
735 807 4.950475 TCAATAGTTGTCTCGTCATCCTCT 59.050 41.667 0.00 0.00 0.00 3.69
736 808 5.066634 TCAATAGTTGTCTCGTCATCCTCTC 59.933 44.000 0.00 0.00 0.00 3.20
737 809 2.796557 AGTTGTCTCGTCATCCTCTCA 58.203 47.619 0.00 0.00 0.00 3.27
738 810 2.752354 AGTTGTCTCGTCATCCTCTCAG 59.248 50.000 0.00 0.00 0.00 3.35
739 811 1.098869 TGTCTCGTCATCCTCTCAGC 58.901 55.000 0.00 0.00 0.00 4.26
740 812 1.340502 TGTCTCGTCATCCTCTCAGCT 60.341 52.381 0.00 0.00 0.00 4.24
741 813 2.092914 TGTCTCGTCATCCTCTCAGCTA 60.093 50.000 0.00 0.00 0.00 3.32
742 814 2.946329 GTCTCGTCATCCTCTCAGCTAA 59.054 50.000 0.00 0.00 0.00 3.09
743 815 3.003275 GTCTCGTCATCCTCTCAGCTAAG 59.997 52.174 0.00 0.00 0.00 2.18
744 816 2.948979 CTCGTCATCCTCTCAGCTAAGT 59.051 50.000 0.00 0.00 0.00 2.24
745 817 3.357203 TCGTCATCCTCTCAGCTAAGTT 58.643 45.455 0.00 0.00 0.00 2.66
746 818 3.129462 TCGTCATCCTCTCAGCTAAGTTG 59.871 47.826 0.00 0.00 0.00 3.16
747 819 3.194062 GTCATCCTCTCAGCTAAGTTGC 58.806 50.000 0.00 0.00 0.00 4.17
748 820 2.169352 TCATCCTCTCAGCTAAGTTGCC 59.831 50.000 0.00 0.00 0.00 4.52
749 821 1.644509 TCCTCTCAGCTAAGTTGCCA 58.355 50.000 0.00 0.00 0.00 4.92
750 822 1.276421 TCCTCTCAGCTAAGTTGCCAC 59.724 52.381 0.00 0.00 0.00 5.01
751 823 1.677217 CCTCTCAGCTAAGTTGCCACC 60.677 57.143 0.00 0.00 0.00 4.61
752 824 0.324943 TCTCAGCTAAGTTGCCACCC 59.675 55.000 0.00 0.00 0.00 4.61
753 825 0.678048 CTCAGCTAAGTTGCCACCCC 60.678 60.000 0.00 0.00 0.00 4.95
754 826 2.040544 CAGCTAAGTTGCCACCCCG 61.041 63.158 0.00 0.00 0.00 5.73
755 827 2.750237 GCTAAGTTGCCACCCCGG 60.750 66.667 0.00 0.00 38.11 5.73
776 848 3.283684 CCCCGCGTGCTTGTTGAA 61.284 61.111 4.92 0.00 0.00 2.69
777 849 2.051345 CCCGCGTGCTTGTTGAAC 60.051 61.111 4.92 0.00 0.00 3.18
778 850 2.542907 CCCGCGTGCTTGTTGAACT 61.543 57.895 4.92 0.00 0.00 3.01
779 851 1.082756 CCGCGTGCTTGTTGAACTC 60.083 57.895 4.92 0.00 0.00 3.01
780 852 1.437089 CGCGTGCTTGTTGAACTCG 60.437 57.895 0.00 0.00 0.00 4.18
781 853 1.722507 GCGTGCTTGTTGAACTCGC 60.723 57.895 0.00 0.00 35.86 5.03
782 854 1.082756 CGTGCTTGTTGAACTCGCC 60.083 57.895 0.00 0.00 0.00 5.54
783 855 1.498865 CGTGCTTGTTGAACTCGCCT 61.499 55.000 0.00 0.00 0.00 5.52
784 856 0.235926 GTGCTTGTTGAACTCGCCTC 59.764 55.000 0.00 0.00 0.00 4.70
785 857 0.884704 TGCTTGTTGAACTCGCCTCC 60.885 55.000 0.00 0.00 0.00 4.30
786 858 1.578206 GCTTGTTGAACTCGCCTCCC 61.578 60.000 0.00 0.00 0.00 4.30
787 859 0.035458 CTTGTTGAACTCGCCTCCCT 59.965 55.000 0.00 0.00 0.00 4.20
788 860 0.472471 TTGTTGAACTCGCCTCCCTT 59.528 50.000 0.00 0.00 0.00 3.95
789 861 0.250295 TGTTGAACTCGCCTCCCTTG 60.250 55.000 0.00 0.00 0.00 3.61
790 862 0.955919 GTTGAACTCGCCTCCCTTGG 60.956 60.000 0.00 0.00 0.00 3.61
791 863 1.125093 TTGAACTCGCCTCCCTTGGA 61.125 55.000 0.00 0.00 0.00 3.53
792 864 1.125093 TGAACTCGCCTCCCTTGGAA 61.125 55.000 0.00 0.00 0.00 3.53
793 865 0.673956 GAACTCGCCTCCCTTGGAAC 60.674 60.000 0.00 0.00 0.00 3.62
794 866 2.125512 CTCGCCTCCCTTGGAACG 60.126 66.667 0.00 0.00 34.13 3.95
795 867 2.602267 TCGCCTCCCTTGGAACGA 60.602 61.111 0.00 4.36 37.80 3.85
796 868 1.961180 CTCGCCTCCCTTGGAACGAT 61.961 60.000 7.97 0.00 38.85 3.73
797 869 1.078426 CGCCTCCCTTGGAACGATT 60.078 57.895 0.00 0.00 34.56 3.34
798 870 1.090052 CGCCTCCCTTGGAACGATTC 61.090 60.000 0.00 0.00 34.56 2.52
799 871 1.090052 GCCTCCCTTGGAACGATTCG 61.090 60.000 4.14 4.14 0.00 3.34
800 872 1.090052 CCTCCCTTGGAACGATTCGC 61.090 60.000 5.86 0.00 0.00 4.70
801 873 0.108138 CTCCCTTGGAACGATTCGCT 60.108 55.000 5.86 0.00 0.00 4.93
802 874 0.108329 TCCCTTGGAACGATTCGCTC 60.108 55.000 5.86 3.16 0.00 5.03
803 875 1.090052 CCCTTGGAACGATTCGCTCC 61.090 60.000 19.22 19.22 41.78 4.70
806 878 3.853104 TGGAACGATTCGCTCCAAT 57.147 47.368 24.78 0.00 46.82 3.16
807 879 1.651987 TGGAACGATTCGCTCCAATC 58.348 50.000 24.78 6.42 46.82 2.67
808 880 1.066502 TGGAACGATTCGCTCCAATCA 60.067 47.619 24.78 5.58 46.82 2.57
809 881 2.213499 GGAACGATTCGCTCCAATCAT 58.787 47.619 20.69 0.00 41.17 2.45
810 882 2.221981 GGAACGATTCGCTCCAATCATC 59.778 50.000 20.69 0.00 41.17 2.92
811 883 2.602257 ACGATTCGCTCCAATCATCA 57.398 45.000 5.86 0.00 32.99 3.07
812 884 3.117491 ACGATTCGCTCCAATCATCAT 57.883 42.857 5.86 0.00 32.99 2.45
813 885 3.062763 ACGATTCGCTCCAATCATCATC 58.937 45.455 5.86 0.00 32.99 2.92
814 886 3.062042 CGATTCGCTCCAATCATCATCA 58.938 45.455 0.00 0.00 32.99 3.07
815 887 3.683340 CGATTCGCTCCAATCATCATCAT 59.317 43.478 0.00 0.00 32.99 2.45
816 888 4.201695 CGATTCGCTCCAATCATCATCATC 60.202 45.833 0.00 0.00 32.99 2.92
817 889 3.049708 TCGCTCCAATCATCATCATCC 57.950 47.619 0.00 0.00 0.00 3.51
818 890 2.369532 TCGCTCCAATCATCATCATCCA 59.630 45.455 0.00 0.00 0.00 3.41
819 891 2.483106 CGCTCCAATCATCATCATCCAC 59.517 50.000 0.00 0.00 0.00 4.02
820 892 3.752665 GCTCCAATCATCATCATCCACT 58.247 45.455 0.00 0.00 0.00 4.00
821 893 3.752222 GCTCCAATCATCATCATCCACTC 59.248 47.826 0.00 0.00 0.00 3.51
822 894 3.995048 CTCCAATCATCATCATCCACTCG 59.005 47.826 0.00 0.00 0.00 4.18
823 895 2.483106 CCAATCATCATCATCCACTCGC 59.517 50.000 0.00 0.00 0.00 5.03
824 896 2.075979 ATCATCATCATCCACTCGCG 57.924 50.000 0.00 0.00 0.00 5.87
825 897 0.598419 TCATCATCATCCACTCGCGC 60.598 55.000 0.00 0.00 0.00 6.86
826 898 0.599466 CATCATCATCCACTCGCGCT 60.599 55.000 5.56 0.00 0.00 5.92
827 899 0.961753 ATCATCATCCACTCGCGCTA 59.038 50.000 5.56 0.00 0.00 4.26
828 900 0.961753 TCATCATCCACTCGCGCTAT 59.038 50.000 5.56 0.00 0.00 2.97
829 901 1.066136 CATCATCCACTCGCGCTATG 58.934 55.000 5.56 0.00 0.00 2.23
830 902 0.668706 ATCATCCACTCGCGCTATGC 60.669 55.000 5.56 0.00 41.47 3.14
831 903 1.592400 CATCCACTCGCGCTATGCA 60.592 57.895 5.56 0.00 46.97 3.96
832 904 1.592669 ATCCACTCGCGCTATGCAC 60.593 57.895 5.56 0.00 46.97 4.57
833 905 2.296814 ATCCACTCGCGCTATGCACA 62.297 55.000 5.56 0.00 46.97 4.57
834 906 2.520039 CCACTCGCGCTATGCACAG 61.520 63.158 5.56 0.00 46.97 3.66
906 978 2.089201 TGCTCGATCGAACTAGTCCAA 58.911 47.619 19.92 0.00 0.00 3.53
911 983 2.602878 GATCGAACTAGTCCAACGCAA 58.397 47.619 0.00 0.00 0.00 4.85
983 1071 3.554232 CAGCTGTGTGGTGCTACG 58.446 61.111 5.25 0.00 37.81 3.51
984 1072 2.029288 CAGCTGTGTGGTGCTACGG 61.029 63.158 5.25 0.00 37.81 4.02
986 1074 2.742372 CTGTGTGGTGCTACGGCC 60.742 66.667 0.00 0.00 37.74 6.13
987 1075 4.673298 TGTGTGGTGCTACGGCCG 62.673 66.667 26.86 26.86 37.74 6.13
988 1076 4.675029 GTGTGGTGCTACGGCCGT 62.675 66.667 36.01 36.01 37.74 5.68
989 1077 4.367023 TGTGGTGCTACGGCCGTC 62.367 66.667 38.01 22.80 37.74 4.79
1089 1182 2.679716 GAGGCCAAGGAGCACCAT 59.320 61.111 5.01 0.00 38.94 3.55
1116 1209 2.093447 GTGGGACATCTCCTACCAGTTG 60.093 54.545 0.00 0.00 44.52 3.16
2304 3795 0.457166 CGTACCTCGTGGCGATGAAA 60.457 55.000 2.76 0.00 34.61 2.69
2775 4266 1.149174 GCCATCGTCCATCATGGGT 59.851 57.895 3.05 0.00 40.16 4.51
2781 4272 0.322456 CGTCCATCATGGGTTGTGGT 60.322 55.000 3.05 0.00 38.32 4.16
2783 4274 1.071434 TCCATCATGGGTTGTGGTCA 58.929 50.000 3.05 0.00 38.32 4.02
2823 4314 1.087771 CGGACCGGGTGCAAGTTATC 61.088 60.000 19.13 0.00 0.00 1.75
2886 4499 9.462606 AAATAAAGGTTGATCTTACTAGGGTTG 57.537 33.333 0.00 0.00 0.00 3.77
2890 4503 5.312443 AGGTTGATCTTACTAGGGTTGGTTT 59.688 40.000 0.00 0.00 0.00 3.27
2906 4544 8.885346 AGGGTTGGTTTTTATTTCATTTATCCA 58.115 29.630 0.00 0.00 0.00 3.41
2937 4575 7.870509 AAGTATACAAGGTACATACAGTCGA 57.129 36.000 5.50 0.00 0.00 4.20
2939 4577 9.565090 AAGTATACAAGGTACATACAGTCGATA 57.435 33.333 5.50 0.00 0.00 2.92
3005 4643 9.329913 CCATTAAAATCTTTGAGTTTGTCTACG 57.670 33.333 3.69 0.00 32.22 3.51
3006 4644 9.329913 CATTAAAATCTTTGAGTTTGTCTACGG 57.670 33.333 3.69 0.00 32.22 4.02
3007 4645 8.665643 TTAAAATCTTTGAGTTTGTCTACGGA 57.334 30.769 3.69 0.00 32.22 4.69
3008 4646 7.745620 AAAATCTTTGAGTTTGTCTACGGAT 57.254 32.000 0.00 0.00 28.65 4.18
3009 4647 6.727824 AATCTTTGAGTTTGTCTACGGATG 57.272 37.500 0.00 0.00 0.00 3.51
3010 4648 5.209818 TCTTTGAGTTTGTCTACGGATGT 57.790 39.130 0.00 0.00 0.00 3.06
3011 4649 6.335471 TCTTTGAGTTTGTCTACGGATGTA 57.665 37.500 0.00 0.00 0.00 2.29
3012 4650 6.931838 TCTTTGAGTTTGTCTACGGATGTAT 58.068 36.000 0.00 0.00 0.00 2.29
3013 4651 7.383687 TCTTTGAGTTTGTCTACGGATGTATT 58.616 34.615 0.00 0.00 0.00 1.89
3014 4652 8.525316 TCTTTGAGTTTGTCTACGGATGTATTA 58.475 33.333 0.00 0.00 0.00 0.98
3015 4653 9.146984 CTTTGAGTTTGTCTACGGATGTATTAA 57.853 33.333 0.00 0.00 0.00 1.40
3017 4655 8.642908 TGAGTTTGTCTACGGATGTATTAATG 57.357 34.615 0.00 0.00 0.00 1.90
3018 4656 8.255206 TGAGTTTGTCTACGGATGTATTAATGT 58.745 33.333 0.00 0.00 0.00 2.71
3019 4657 8.644318 AGTTTGTCTACGGATGTATTAATGTC 57.356 34.615 0.00 0.00 0.00 3.06
3020 4658 8.255206 AGTTTGTCTACGGATGTATTAATGTCA 58.745 33.333 0.00 0.00 0.00 3.58
3021 4659 8.540492 GTTTGTCTACGGATGTATTAATGTCAG 58.460 37.037 0.00 0.00 0.00 3.51
3022 4660 7.342769 TGTCTACGGATGTATTAATGTCAGT 57.657 36.000 0.00 3.78 0.00 3.41
3023 4661 7.423199 TGTCTACGGATGTATTAATGTCAGTC 58.577 38.462 0.00 0.00 0.00 3.51
3024 4662 6.577800 GTCTACGGATGTATTAATGTCAGTCG 59.422 42.308 0.00 7.99 0.00 4.18
3025 4663 4.617959 ACGGATGTATTAATGTCAGTCGG 58.382 43.478 0.00 5.19 0.00 4.79
3026 4664 4.098960 ACGGATGTATTAATGTCAGTCGGT 59.901 41.667 0.00 5.67 0.00 4.69
3027 4665 5.047847 CGGATGTATTAATGTCAGTCGGTT 58.952 41.667 0.00 0.00 0.00 4.44
3028 4666 5.175126 CGGATGTATTAATGTCAGTCGGTTC 59.825 44.000 0.00 0.00 0.00 3.62
3029 4667 6.046593 GGATGTATTAATGTCAGTCGGTTCA 58.953 40.000 0.00 0.00 0.00 3.18
3030 4668 6.706270 GGATGTATTAATGTCAGTCGGTTCAT 59.294 38.462 0.00 0.00 0.00 2.57
3031 4669 6.902224 TGTATTAATGTCAGTCGGTTCATG 57.098 37.500 0.00 0.00 0.00 3.07
3036 4674 8.731275 ATTAATGTCAGTCGGTTCATGATAAA 57.269 30.769 0.00 0.00 0.00 1.40
3038 4676 7.630242 AATGTCAGTCGGTTCATGATAAATT 57.370 32.000 0.00 0.00 0.00 1.82
3042 4680 6.535150 GTCAGTCGGTTCATGATAAATTCTCA 59.465 38.462 0.00 0.00 0.00 3.27
3102 4740 1.673626 GGCCGAACCGATACAAAGTGA 60.674 52.381 0.00 0.00 0.00 3.41
3103 4741 2.277084 GCCGAACCGATACAAAGTGAT 58.723 47.619 0.00 0.00 0.00 3.06
3114 4753 6.536582 CCGATACAAAGTGATGAGAAATCTGT 59.463 38.462 0.00 0.00 0.00 3.41
3127 4766 6.398918 TGAGAAATCTGTAAGCAAGTAGGTC 58.601 40.000 0.00 0.00 0.00 3.85
3133 4772 4.222145 TCTGTAAGCAAGTAGGTCGGAAAT 59.778 41.667 0.00 0.00 0.00 2.17
3143 4890 9.069078 GCAAGTAGGTCGGAAATAAAATAAAAC 57.931 33.333 0.00 0.00 0.00 2.43
3181 4928 2.203625 AAGTGCCGCCAACCCAAT 60.204 55.556 0.00 0.00 0.00 3.16
3183 4930 1.248101 AAGTGCCGCCAACCCAATAC 61.248 55.000 0.00 0.00 0.00 1.89
3184 4931 1.677633 GTGCCGCCAACCCAATACT 60.678 57.895 0.00 0.00 0.00 2.12
3192 4939 3.270877 GCCAACCCAATACTGAGTGTAG 58.729 50.000 0.00 0.00 34.24 2.74
3195 4942 5.556915 CCAACCCAATACTGAGTGTAGAAA 58.443 41.667 0.00 0.00 34.24 2.52
3196 4943 5.411669 CCAACCCAATACTGAGTGTAGAAAC 59.588 44.000 0.00 0.00 34.24 2.78
3197 4944 5.818678 ACCCAATACTGAGTGTAGAAACA 57.181 39.130 0.00 0.00 34.24 2.83
3198 4945 6.182507 ACCCAATACTGAGTGTAGAAACAA 57.817 37.500 0.00 0.00 37.36 2.83
3199 4946 6.597562 ACCCAATACTGAGTGTAGAAACAAA 58.402 36.000 0.00 0.00 37.36 2.83
3200 4947 6.485648 ACCCAATACTGAGTGTAGAAACAAAC 59.514 38.462 0.00 0.00 37.36 2.93
3201 4948 6.485313 CCCAATACTGAGTGTAGAAACAAACA 59.515 38.462 0.00 0.00 37.36 2.83
3209 4956 5.930135 AGTGTAGAAACAAACACAGGAGAT 58.070 37.500 8.18 0.00 46.71 2.75
3212 4959 6.704493 GTGTAGAAACAAACACAGGAGATACA 59.296 38.462 0.94 0.00 44.30 2.29
3223 4970 5.721960 ACACAGGAGATACAACCTCTAACAT 59.278 40.000 0.00 0.00 33.91 2.71
3232 4979 9.787435 AGATACAACCTCTAACATACAACAAAA 57.213 29.630 0.00 0.00 0.00 2.44
3234 4981 7.875327 ACAACCTCTAACATACAACAAAAGT 57.125 32.000 0.00 0.00 0.00 2.66
3251 4998 7.259290 ACAAAAGTGACTATCGAACAATGTT 57.741 32.000 0.00 0.00 0.00 2.71
3258 5005 6.588756 GTGACTATCGAACAATGTTGGAACTA 59.411 38.462 14.40 3.59 0.00 2.24
3286 5033 0.884259 TGCAAGACCACCACACATCG 60.884 55.000 0.00 0.00 0.00 3.84
3302 5049 1.135489 CATCGTAGTACCACGCACACT 60.135 52.381 9.07 0.00 41.67 3.55
3354 5135 2.442272 GACTGGCCCCTCGCTCTA 60.442 66.667 0.00 0.00 37.74 2.43
3449 5361 2.288395 CCAAAGCTTTTCGAATGCCACT 60.288 45.455 9.53 1.52 32.41 4.00
3478 5392 2.091333 ACCCTTTTCTCCTTTCAGCCAA 60.091 45.455 0.00 0.00 0.00 4.52
3506 5420 1.318158 GCCAATGGAGGTGCCTCAAG 61.318 60.000 18.75 6.14 44.40 3.02
3551 5466 2.148768 GACCACCCGACCTTTACAAAG 58.851 52.381 0.00 0.00 35.79 2.77
3555 5470 2.222445 CACCCGACCTTTACAAAGTTCG 59.778 50.000 12.93 12.93 46.33 3.95
3572 5487 3.127533 GCCGGAGCACACCACATC 61.128 66.667 5.05 0.00 39.53 3.06
3577 5492 1.591703 GAGCACACCACATCCGAGA 59.408 57.895 0.00 0.00 0.00 4.04
3578 5493 0.737715 GAGCACACCACATCCGAGAC 60.738 60.000 0.00 0.00 0.00 3.36
3586 5501 2.278857 CATCCGAGACCGCTTCCG 60.279 66.667 0.00 0.00 0.00 4.30
3606 5521 5.028131 TCCGGGAAATTAAGACTCCTACTT 58.972 41.667 0.00 0.00 0.00 2.24
3640 5555 7.839680 ACCAAATCTCCAAGAGTAACAATTT 57.160 32.000 0.00 0.00 0.00 1.82
3659 5574 3.769739 TTTGGTGATGACTGTGTAGCT 57.230 42.857 0.00 0.00 0.00 3.32
3684 5599 0.321298 ACGATTCGGTTTGGTGGGAG 60.321 55.000 11.29 0.00 0.00 4.30
3721 5636 8.923270 TGGTTCATCTTTCAATCCTAAAAGTTT 58.077 29.630 0.00 0.00 34.73 2.66
3727 5642 7.496747 TCTTTCAATCCTAAAAGTTTTGTGGG 58.503 34.615 11.18 10.02 34.73 4.61
3775 5690 3.149196 TGAGCTTTTAGAGGTTTGGCAG 58.851 45.455 0.00 0.00 35.91 4.85
3802 5717 5.632347 GTGAAGCAACTCAAATGAAGGATTG 59.368 40.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 206 8.773033 AATTAATTATGATCAAAGAGGGCAGT 57.227 30.769 0.00 0.00 0.00 4.40
266 333 3.025978 CCAATGACCATGGTGTTGCTAT 58.974 45.455 25.52 3.90 33.08 2.97
274 341 0.887933 GAAACGCCAATGACCATGGT 59.112 50.000 19.89 19.89 40.23 3.55
369 440 5.880332 AGATAGCTGGCGTTTCTGATAAAAA 59.120 36.000 0.00 0.00 0.00 1.94
385 456 2.776312 TAGAAACGCCGAGATAGCTG 57.224 50.000 0.00 0.00 0.00 4.24
391 462 1.546923 TCCAACATAGAAACGCCGAGA 59.453 47.619 0.00 0.00 0.00 4.04
485 557 5.656416 TCTGACCCTTTGAATGAACTTTGTT 59.344 36.000 0.00 0.00 0.00 2.83
495 567 1.272704 GGGCCTTCTGACCCTTTGAAT 60.273 52.381 0.84 0.00 43.36 2.57
511 583 2.296945 TATTGCTGATGGGGTGGGCC 62.297 60.000 0.00 0.00 0.00 5.80
512 584 0.178953 ATATTGCTGATGGGGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
513 585 1.883638 CGATATTGCTGATGGGGTGGG 60.884 57.143 0.00 0.00 0.00 4.61
514 586 1.527034 CGATATTGCTGATGGGGTGG 58.473 55.000 0.00 0.00 0.00 4.61
515 587 1.527034 CCGATATTGCTGATGGGGTG 58.473 55.000 0.00 0.00 0.00 4.61
516 588 0.250901 GCCGATATTGCTGATGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
517 589 0.250858 TGCCGATATTGCTGATGGGG 60.251 55.000 0.00 0.00 0.00 4.96
518 590 0.877071 GTGCCGATATTGCTGATGGG 59.123 55.000 0.00 0.00 0.00 4.00
519 591 0.877071 GGTGCCGATATTGCTGATGG 59.123 55.000 0.00 0.00 0.00 3.51
520 592 0.514255 CGGTGCCGATATTGCTGATG 59.486 55.000 4.35 0.00 42.83 3.07
521 593 0.603707 CCGGTGCCGATATTGCTGAT 60.604 55.000 12.71 0.00 42.83 2.90
522 594 1.227527 CCGGTGCCGATATTGCTGA 60.228 57.895 12.71 0.00 42.83 4.26
523 595 0.813610 TTCCGGTGCCGATATTGCTG 60.814 55.000 12.71 0.00 42.83 4.41
524 596 0.107410 TTTCCGGTGCCGATATTGCT 60.107 50.000 12.71 0.00 42.83 3.91
525 597 0.736053 TTTTCCGGTGCCGATATTGC 59.264 50.000 12.71 0.00 42.83 3.56
526 598 1.268539 GCTTTTCCGGTGCCGATATTG 60.269 52.381 12.71 0.96 42.83 1.90
527 599 1.021968 GCTTTTCCGGTGCCGATATT 58.978 50.000 12.71 0.00 42.83 1.28
528 600 0.180406 AGCTTTTCCGGTGCCGATAT 59.820 50.000 12.71 0.00 42.83 1.63
529 601 0.742990 CAGCTTTTCCGGTGCCGATA 60.743 55.000 12.71 0.00 42.83 2.92
530 602 2.040544 CAGCTTTTCCGGTGCCGAT 61.041 57.895 12.71 0.00 42.83 4.18
531 603 2.668212 CAGCTTTTCCGGTGCCGA 60.668 61.111 12.71 0.00 42.83 5.54
535 607 1.444895 GCATGCAGCTTTTCCGGTG 60.445 57.895 14.21 0.00 41.15 4.94
536 608 1.252904 ATGCATGCAGCTTTTCCGGT 61.253 50.000 26.69 1.43 45.94 5.28
537 609 0.804544 CATGCATGCAGCTTTTCCGG 60.805 55.000 26.69 0.00 45.94 5.14
538 610 2.660944 CATGCATGCAGCTTTTCCG 58.339 52.632 26.69 2.94 45.94 4.30
554 626 0.956633 GATTCCGACCATGCATGCAT 59.043 50.000 27.46 27.46 37.08 3.96
555 627 1.102809 GGATTCCGACCATGCATGCA 61.103 55.000 25.04 25.04 0.00 3.96
556 628 1.656441 GGATTCCGACCATGCATGC 59.344 57.895 21.69 11.82 0.00 4.06
569 641 1.134788 ACGTGGATGGAAGACGGATTC 60.135 52.381 0.00 0.00 37.42 2.52
570 642 0.902531 ACGTGGATGGAAGACGGATT 59.097 50.000 0.00 0.00 37.42 3.01
571 643 0.460311 GACGTGGATGGAAGACGGAT 59.540 55.000 0.00 0.00 37.42 4.18
572 644 1.888018 GACGTGGATGGAAGACGGA 59.112 57.895 0.00 0.00 37.42 4.69
573 645 1.516386 CGACGTGGATGGAAGACGG 60.516 63.158 0.00 0.00 37.42 4.79
574 646 2.158959 GCGACGTGGATGGAAGACG 61.159 63.158 0.11 0.00 39.03 4.18
575 647 0.802607 GAGCGACGTGGATGGAAGAC 60.803 60.000 0.11 0.00 0.00 3.01
576 648 1.511305 GAGCGACGTGGATGGAAGA 59.489 57.895 0.11 0.00 0.00 2.87
577 649 1.519455 GGAGCGACGTGGATGGAAG 60.519 63.158 0.11 0.00 0.00 3.46
578 650 1.945354 GAGGAGCGACGTGGATGGAA 61.945 60.000 0.11 0.00 0.00 3.53
579 651 2.362503 AGGAGCGACGTGGATGGA 60.363 61.111 0.11 0.00 0.00 3.41
580 652 2.105128 GAGGAGCGACGTGGATGG 59.895 66.667 0.11 0.00 0.00 3.51
581 653 2.278206 CGAGGAGCGACGTGGATG 60.278 66.667 0.11 0.00 44.57 3.51
582 654 2.437895 TCGAGGAGCGACGTGGAT 60.438 61.111 0.11 0.00 45.59 3.41
594 666 4.609247 GATCGCCGACCGTCGAGG 62.609 72.222 22.40 12.84 43.74 4.63
595 667 4.939915 CGATCGCCGACCGTCGAG 62.940 72.222 22.40 14.95 43.74 4.04
605 677 0.309922 TACAGAATCGGTCGATCGCC 59.690 55.000 14.58 13.99 33.08 5.54
606 678 2.115348 TTACAGAATCGGTCGATCGC 57.885 50.000 14.58 5.58 33.08 4.58
607 679 3.422217 CACATTACAGAATCGGTCGATCG 59.578 47.826 12.98 12.98 33.08 3.69
608 680 4.207224 CACACATTACAGAATCGGTCGATC 59.793 45.833 6.32 0.00 33.08 3.69
609 681 4.112634 CACACATTACAGAATCGGTCGAT 58.887 43.478 0.00 0.00 36.23 3.59
610 682 3.057104 ACACACATTACAGAATCGGTCGA 60.057 43.478 0.00 0.00 0.00 4.20
611 683 3.250744 ACACACATTACAGAATCGGTCG 58.749 45.455 0.00 0.00 0.00 4.79
612 684 5.382303 CAAACACACATTACAGAATCGGTC 58.618 41.667 0.00 0.00 0.00 4.79
613 685 4.215399 CCAAACACACATTACAGAATCGGT 59.785 41.667 0.00 0.00 0.00 4.69
614 686 4.215399 ACCAAACACACATTACAGAATCGG 59.785 41.667 0.00 0.00 0.00 4.18
615 687 5.356882 ACCAAACACACATTACAGAATCG 57.643 39.130 0.00 0.00 0.00 3.34
616 688 5.402270 GCAACCAAACACACATTACAGAATC 59.598 40.000 0.00 0.00 0.00 2.52
617 689 5.068987 AGCAACCAAACACACATTACAGAAT 59.931 36.000 0.00 0.00 0.00 2.40
618 690 4.400884 AGCAACCAAACACACATTACAGAA 59.599 37.500 0.00 0.00 0.00 3.02
619 691 3.951037 AGCAACCAAACACACATTACAGA 59.049 39.130 0.00 0.00 0.00 3.41
620 692 4.305989 AGCAACCAAACACACATTACAG 57.694 40.909 0.00 0.00 0.00 2.74
621 693 4.428209 CAAGCAACCAAACACACATTACA 58.572 39.130 0.00 0.00 0.00 2.41
622 694 3.245048 GCAAGCAACCAAACACACATTAC 59.755 43.478 0.00 0.00 0.00 1.89
623 695 3.118992 TGCAAGCAACCAAACACACATTA 60.119 39.130 0.00 0.00 0.00 1.90
624 696 2.278854 GCAAGCAACCAAACACACATT 58.721 42.857 0.00 0.00 0.00 2.71
625 697 1.206610 TGCAAGCAACCAAACACACAT 59.793 42.857 0.00 0.00 0.00 3.21
626 698 0.605083 TGCAAGCAACCAAACACACA 59.395 45.000 0.00 0.00 0.00 3.72
627 699 0.998669 GTGCAAGCAACCAAACACAC 59.001 50.000 0.00 0.00 0.00 3.82
628 700 0.894141 AGTGCAAGCAACCAAACACA 59.106 45.000 0.00 0.00 0.00 3.72
629 701 1.280066 CAGTGCAAGCAACCAAACAC 58.720 50.000 0.00 0.00 0.00 3.32
630 702 0.459934 GCAGTGCAAGCAACCAAACA 60.460 50.000 11.09 0.00 0.00 2.83
631 703 0.459934 TGCAGTGCAAGCAACCAAAC 60.460 50.000 17.26 0.00 39.39 2.93
632 704 0.179105 CTGCAGTGCAAGCAACCAAA 60.179 50.000 20.22 0.00 42.17 3.28
633 705 1.438399 CTGCAGTGCAAGCAACCAA 59.562 52.632 20.22 0.00 42.17 3.67
634 706 3.121934 CTGCAGTGCAAGCAACCA 58.878 55.556 20.22 0.00 42.17 3.67
635 707 2.355481 GCTGCAGTGCAAGCAACC 60.355 61.111 25.14 6.72 42.17 3.77
636 708 2.355481 GGCTGCAGTGCAAGCAAC 60.355 61.111 28.57 15.98 42.17 4.17
637 709 2.149803 GATGGCTGCAGTGCAAGCAA 62.150 55.000 28.57 22.80 42.17 3.91
638 710 2.599281 ATGGCTGCAGTGCAAGCA 60.599 55.556 28.57 19.61 38.41 3.91
639 711 2.181021 GATGGCTGCAGTGCAAGC 59.819 61.111 20.22 22.07 38.41 4.01
640 712 2.483745 CGATGGCTGCAGTGCAAG 59.516 61.111 20.22 13.96 38.41 4.01
641 713 3.057548 CCGATGGCTGCAGTGCAA 61.058 61.111 20.22 4.63 38.41 4.08
659 731 0.462581 TGATGAATCACGGCCTCTGC 60.463 55.000 0.00 0.00 0.00 4.26
660 732 1.667724 GTTGATGAATCACGGCCTCTG 59.332 52.381 0.00 0.00 36.36 3.35
661 733 1.740380 CGTTGATGAATCACGGCCTCT 60.740 52.381 0.00 0.00 36.36 3.69
662 734 0.652592 CGTTGATGAATCACGGCCTC 59.347 55.000 0.00 0.00 36.36 4.70
663 735 0.036388 ACGTTGATGAATCACGGCCT 60.036 50.000 0.00 0.00 36.36 5.19
664 736 0.096976 CACGTTGATGAATCACGGCC 59.903 55.000 14.97 0.00 36.36 6.13
665 737 0.521242 GCACGTTGATGAATCACGGC 60.521 55.000 14.97 12.30 36.36 5.68
666 738 1.078709 AGCACGTTGATGAATCACGG 58.921 50.000 14.97 4.92 36.36 4.94
667 739 2.157474 TGAAGCACGTTGATGAATCACG 59.843 45.455 11.25 11.25 36.36 4.35
668 740 3.433274 TCTGAAGCACGTTGATGAATCAC 59.567 43.478 0.00 0.00 36.36 3.06
669 741 3.663025 TCTGAAGCACGTTGATGAATCA 58.337 40.909 0.00 0.00 34.44 2.57
670 742 4.871993 ATCTGAAGCACGTTGATGAATC 57.128 40.909 0.00 0.00 0.00 2.52
671 743 9.144747 GTATATATCTGAAGCACGTTGATGAAT 57.855 33.333 0.00 0.00 0.00 2.57
672 744 8.360390 AGTATATATCTGAAGCACGTTGATGAA 58.640 33.333 0.00 0.00 0.00 2.57
673 745 7.886338 AGTATATATCTGAAGCACGTTGATGA 58.114 34.615 0.00 0.00 0.00 2.92
674 746 8.430828 CAAGTATATATCTGAAGCACGTTGATG 58.569 37.037 0.00 0.00 0.00 3.07
675 747 7.116948 GCAAGTATATATCTGAAGCACGTTGAT 59.883 37.037 0.00 0.00 0.00 2.57
676 748 6.420903 GCAAGTATATATCTGAAGCACGTTGA 59.579 38.462 0.00 0.00 0.00 3.18
677 749 6.200854 TGCAAGTATATATCTGAAGCACGTTG 59.799 38.462 0.00 0.00 0.00 4.10
678 750 6.280643 TGCAAGTATATATCTGAAGCACGTT 58.719 36.000 0.00 0.00 0.00 3.99
679 751 5.842907 TGCAAGTATATATCTGAAGCACGT 58.157 37.500 0.00 0.00 0.00 4.49
680 752 6.422100 ACTTGCAAGTATATATCTGAAGCACG 59.578 38.462 30.25 0.00 37.52 5.34
681 753 7.721286 ACTTGCAAGTATATATCTGAAGCAC 57.279 36.000 30.25 0.00 37.52 4.40
682 754 7.254898 GCAACTTGCAAGTATATATCTGAAGCA 60.255 37.037 31.31 0.00 44.26 3.91
683 755 7.074502 GCAACTTGCAAGTATATATCTGAAGC 58.925 38.462 31.31 15.74 44.26 3.86
700 772 5.922544 AGACAACTATTGAAATGCAACTTGC 59.077 36.000 6.82 6.82 45.29 4.01
701 773 6.303970 CGAGACAACTATTGAAATGCAACTTG 59.696 38.462 0.00 0.00 39.78 3.16
702 774 6.017109 ACGAGACAACTATTGAAATGCAACTT 60.017 34.615 0.00 0.00 39.78 2.66
703 775 5.470098 ACGAGACAACTATTGAAATGCAACT 59.530 36.000 0.00 0.00 39.78 3.16
704 776 5.689819 ACGAGACAACTATTGAAATGCAAC 58.310 37.500 0.00 0.00 39.78 4.17
705 777 5.468409 TGACGAGACAACTATTGAAATGCAA 59.532 36.000 0.00 0.00 41.53 4.08
706 778 4.994217 TGACGAGACAACTATTGAAATGCA 59.006 37.500 0.00 0.00 0.00 3.96
707 779 5.530519 TGACGAGACAACTATTGAAATGC 57.469 39.130 0.00 0.00 0.00 3.56
708 780 6.536582 AGGATGACGAGACAACTATTGAAATG 59.463 38.462 0.00 0.00 0.00 2.32
709 781 6.644347 AGGATGACGAGACAACTATTGAAAT 58.356 36.000 0.00 0.00 0.00 2.17
710 782 6.037786 AGGATGACGAGACAACTATTGAAA 57.962 37.500 0.00 0.00 0.00 2.69
711 783 5.419155 AGAGGATGACGAGACAACTATTGAA 59.581 40.000 0.00 0.00 0.00 2.69
712 784 4.950475 AGAGGATGACGAGACAACTATTGA 59.050 41.667 0.00 0.00 0.00 2.57
713 785 5.163612 TGAGAGGATGACGAGACAACTATTG 60.164 44.000 0.00 0.00 0.00 1.90
714 786 4.950475 TGAGAGGATGACGAGACAACTATT 59.050 41.667 0.00 0.00 0.00 1.73
715 787 4.527944 TGAGAGGATGACGAGACAACTAT 58.472 43.478 0.00 0.00 0.00 2.12
716 788 3.942115 CTGAGAGGATGACGAGACAACTA 59.058 47.826 0.00 0.00 0.00 2.24
717 789 2.752354 CTGAGAGGATGACGAGACAACT 59.248 50.000 0.00 0.00 0.00 3.16
718 790 2.733858 GCTGAGAGGATGACGAGACAAC 60.734 54.545 0.00 0.00 0.00 3.32
719 791 1.474478 GCTGAGAGGATGACGAGACAA 59.526 52.381 0.00 0.00 0.00 3.18
720 792 1.098869 GCTGAGAGGATGACGAGACA 58.901 55.000 0.00 0.00 0.00 3.41
721 793 1.388547 AGCTGAGAGGATGACGAGAC 58.611 55.000 0.00 0.00 0.00 3.36
722 794 3.210227 CTTAGCTGAGAGGATGACGAGA 58.790 50.000 0.00 0.00 0.00 4.04
723 795 2.948979 ACTTAGCTGAGAGGATGACGAG 59.051 50.000 13.21 0.00 0.00 4.18
724 796 3.006112 ACTTAGCTGAGAGGATGACGA 57.994 47.619 13.21 0.00 0.00 4.20
725 797 3.443037 CAACTTAGCTGAGAGGATGACG 58.557 50.000 13.21 0.00 0.00 4.35
726 798 3.194062 GCAACTTAGCTGAGAGGATGAC 58.806 50.000 13.21 0.00 0.00 3.06
727 799 2.169352 GGCAACTTAGCTGAGAGGATGA 59.831 50.000 13.21 0.00 34.17 2.92
728 800 2.093288 TGGCAACTTAGCTGAGAGGATG 60.093 50.000 13.21 6.73 37.61 3.51
729 801 2.093235 GTGGCAACTTAGCTGAGAGGAT 60.093 50.000 13.21 0.00 37.61 3.24
730 802 1.276421 GTGGCAACTTAGCTGAGAGGA 59.724 52.381 13.21 0.00 37.61 3.71
731 803 1.677217 GGTGGCAACTTAGCTGAGAGG 60.677 57.143 13.21 4.75 37.61 3.69
732 804 1.677217 GGGTGGCAACTTAGCTGAGAG 60.677 57.143 13.21 5.49 37.61 3.20
733 805 0.324943 GGGTGGCAACTTAGCTGAGA 59.675 55.000 13.21 0.00 37.61 3.27
734 806 0.678048 GGGGTGGCAACTTAGCTGAG 60.678 60.000 0.97 3.53 37.61 3.35
735 807 1.378762 GGGGTGGCAACTTAGCTGA 59.621 57.895 0.97 0.00 37.61 4.26
736 808 2.040544 CGGGGTGGCAACTTAGCTG 61.041 63.158 0.97 0.00 37.61 4.24
737 809 2.351276 CGGGGTGGCAACTTAGCT 59.649 61.111 0.97 0.00 37.61 3.32
738 810 2.750237 CCGGGGTGGCAACTTAGC 60.750 66.667 0.97 0.00 37.61 3.09
759 831 3.283684 TTCAACAAGCACGCGGGG 61.284 61.111 11.92 2.33 0.00 5.73
760 832 2.051345 GTTCAACAAGCACGCGGG 60.051 61.111 12.47 7.92 0.00 6.13
761 833 1.082756 GAGTTCAACAAGCACGCGG 60.083 57.895 12.47 0.00 0.00 6.46
762 834 1.437089 CGAGTTCAACAAGCACGCG 60.437 57.895 3.53 3.53 30.42 6.01
763 835 1.722507 GCGAGTTCAACAAGCACGC 60.723 57.895 0.00 0.00 38.03 5.34
764 836 1.082756 GGCGAGTTCAACAAGCACG 60.083 57.895 9.08 0.00 0.00 5.34
765 837 0.235926 GAGGCGAGTTCAACAAGCAC 59.764 55.000 9.08 0.43 0.00 4.40
766 838 0.884704 GGAGGCGAGTTCAACAAGCA 60.885 55.000 9.08 0.00 0.00 3.91
767 839 1.578206 GGGAGGCGAGTTCAACAAGC 61.578 60.000 0.00 0.00 0.00 4.01
768 840 0.035458 AGGGAGGCGAGTTCAACAAG 59.965 55.000 0.00 0.00 0.00 3.16
769 841 0.472471 AAGGGAGGCGAGTTCAACAA 59.528 50.000 0.00 0.00 0.00 2.83
770 842 0.250295 CAAGGGAGGCGAGTTCAACA 60.250 55.000 0.00 0.00 0.00 3.33
771 843 0.955919 CCAAGGGAGGCGAGTTCAAC 60.956 60.000 0.00 0.00 0.00 3.18
772 844 1.125093 TCCAAGGGAGGCGAGTTCAA 61.125 55.000 0.00 0.00 0.00 2.69
773 845 1.125093 TTCCAAGGGAGGCGAGTTCA 61.125 55.000 0.00 0.00 31.21 3.18
774 846 0.673956 GTTCCAAGGGAGGCGAGTTC 60.674 60.000 0.00 0.00 31.21 3.01
775 847 1.375326 GTTCCAAGGGAGGCGAGTT 59.625 57.895 0.00 0.00 31.21 3.01
776 848 2.943978 CGTTCCAAGGGAGGCGAGT 61.944 63.158 5.71 0.00 35.24 4.18
777 849 1.961180 ATCGTTCCAAGGGAGGCGAG 61.961 60.000 15.37 0.00 41.33 5.03
778 850 1.550130 AATCGTTCCAAGGGAGGCGA 61.550 55.000 13.48 13.48 41.86 5.54
779 851 1.078426 AATCGTTCCAAGGGAGGCG 60.078 57.895 0.00 0.00 34.83 5.52
780 852 1.090052 CGAATCGTTCCAAGGGAGGC 61.090 60.000 0.00 0.00 31.21 4.70
781 853 1.090052 GCGAATCGTTCCAAGGGAGG 61.090 60.000 4.07 0.00 31.21 4.30
782 854 0.108138 AGCGAATCGTTCCAAGGGAG 60.108 55.000 4.07 0.00 31.21 4.30
783 855 0.108329 GAGCGAATCGTTCCAAGGGA 60.108 55.000 8.31 0.00 31.23 4.20
784 856 2.384203 GAGCGAATCGTTCCAAGGG 58.616 57.895 8.31 0.00 31.23 3.95
790 862 2.866156 TGATGATTGGAGCGAATCGTTC 59.134 45.455 11.02 11.02 35.43 3.95
791 863 2.905075 TGATGATTGGAGCGAATCGTT 58.095 42.857 4.07 0.00 35.43 3.85
792 864 2.602257 TGATGATTGGAGCGAATCGT 57.398 45.000 4.07 0.42 35.43 3.73
793 865 3.062042 TGATGATGATTGGAGCGAATCG 58.938 45.455 0.00 0.00 35.43 3.34
794 866 4.094590 GGATGATGATGATTGGAGCGAATC 59.905 45.833 0.00 0.00 33.59 2.52
795 867 4.008330 GGATGATGATGATTGGAGCGAAT 58.992 43.478 0.00 0.00 0.00 3.34
796 868 3.181452 TGGATGATGATGATTGGAGCGAA 60.181 43.478 0.00 0.00 0.00 4.70
797 869 2.369532 TGGATGATGATGATTGGAGCGA 59.630 45.455 0.00 0.00 0.00 4.93
798 870 2.483106 GTGGATGATGATGATTGGAGCG 59.517 50.000 0.00 0.00 0.00 5.03
799 871 3.752222 GAGTGGATGATGATGATTGGAGC 59.248 47.826 0.00 0.00 0.00 4.70
800 872 3.995048 CGAGTGGATGATGATGATTGGAG 59.005 47.826 0.00 0.00 0.00 3.86
801 873 3.804759 GCGAGTGGATGATGATGATTGGA 60.805 47.826 0.00 0.00 0.00 3.53
802 874 2.483106 GCGAGTGGATGATGATGATTGG 59.517 50.000 0.00 0.00 0.00 3.16
803 875 2.157085 CGCGAGTGGATGATGATGATTG 59.843 50.000 0.00 0.00 0.00 2.67
804 876 2.410939 CGCGAGTGGATGATGATGATT 58.589 47.619 0.00 0.00 0.00 2.57
805 877 1.938471 GCGCGAGTGGATGATGATGAT 60.938 52.381 12.10 0.00 0.00 2.45
806 878 0.598419 GCGCGAGTGGATGATGATGA 60.598 55.000 12.10 0.00 0.00 2.92
807 879 0.599466 AGCGCGAGTGGATGATGATG 60.599 55.000 12.10 0.00 0.00 3.07
808 880 0.961753 TAGCGCGAGTGGATGATGAT 59.038 50.000 12.10 0.00 0.00 2.45
809 881 0.961753 ATAGCGCGAGTGGATGATGA 59.038 50.000 12.10 0.00 0.00 2.92
810 882 1.066136 CATAGCGCGAGTGGATGATG 58.934 55.000 12.10 0.00 0.00 3.07
811 883 0.668706 GCATAGCGCGAGTGGATGAT 60.669 55.000 12.10 0.00 0.00 2.45
812 884 1.300156 GCATAGCGCGAGTGGATGA 60.300 57.895 12.10 0.00 0.00 2.92
813 885 1.592400 TGCATAGCGCGAGTGGATG 60.592 57.895 12.10 6.02 46.97 3.51
814 886 1.592669 GTGCATAGCGCGAGTGGAT 60.593 57.895 12.10 0.00 46.97 3.41
815 887 2.202743 GTGCATAGCGCGAGTGGA 60.203 61.111 12.10 2.58 46.97 4.02
816 888 2.509111 TGTGCATAGCGCGAGTGG 60.509 61.111 12.10 0.00 46.97 4.00
817 889 3.001067 CTGTGCATAGCGCGAGTG 58.999 61.111 12.10 5.79 46.97 3.51
818 890 2.887568 GCTGTGCATAGCGCGAGT 60.888 61.111 20.13 0.00 46.97 4.18
819 891 2.683820 TAGGCTGTGCATAGCGCGAG 62.684 60.000 26.42 0.00 46.97 5.03
820 892 2.087462 ATAGGCTGTGCATAGCGCGA 62.087 55.000 26.42 16.68 46.97 5.87
821 893 0.388520 TATAGGCTGTGCATAGCGCG 60.389 55.000 26.42 0.00 46.97 6.86
822 894 2.015736 ATATAGGCTGTGCATAGCGC 57.984 50.000 26.42 19.47 44.60 5.92
823 895 5.399596 CGTTATATATAGGCTGTGCATAGCG 59.600 44.000 26.42 6.75 44.60 4.26
824 896 5.175856 GCGTTATATATAGGCTGTGCATAGC 59.824 44.000 25.75 25.75 42.94 2.97
825 897 5.399596 CGCGTTATATATAGGCTGTGCATAG 59.600 44.000 6.03 6.03 0.00 2.23
826 898 5.163591 ACGCGTTATATATAGGCTGTGCATA 60.164 40.000 5.58 0.00 0.00 3.14
827 899 4.112634 CGCGTTATATATAGGCTGTGCAT 58.887 43.478 0.00 0.00 0.00 3.96
828 900 3.057104 ACGCGTTATATATAGGCTGTGCA 60.057 43.478 5.58 0.00 0.00 4.57
829 901 3.303495 CACGCGTTATATATAGGCTGTGC 59.697 47.826 10.22 8.50 0.00 4.57
830 902 4.323602 CACACGCGTTATATATAGGCTGTG 59.676 45.833 10.22 22.60 35.69 3.66
831 903 4.022589 ACACACGCGTTATATATAGGCTGT 60.023 41.667 10.22 0.00 0.00 4.40
832 904 4.323602 CACACACGCGTTATATATAGGCTG 59.676 45.833 10.22 0.00 0.00 4.85
833 905 4.482386 CACACACGCGTTATATATAGGCT 58.518 43.478 10.22 0.00 0.00 4.58
834 906 3.060363 GCACACACGCGTTATATATAGGC 59.940 47.826 10.22 0.00 0.00 3.93
906 978 3.767630 AAGAAGCCACCCGTTGCGT 62.768 57.895 0.00 0.00 0.00 5.24
911 983 1.600916 GCAAGAAGAAGCCACCCGT 60.601 57.895 0.00 0.00 0.00 5.28
957 1042 0.792640 CCACACAGCTGCTTCGTTAG 59.207 55.000 15.27 0.00 0.00 2.34
962 1047 0.603707 TAGCACCACACAGCTGCTTC 60.604 55.000 15.27 0.00 41.52 3.86
1082 1175 0.249398 GTCCCACTCGTAATGGTGCT 59.751 55.000 2.51 0.00 35.23 4.40
1089 1182 2.526888 AGGAGATGTCCCACTCGTAA 57.473 50.000 5.02 0.00 45.26 3.18
1116 1209 1.079057 GAAGCAGTCGGGGGACTTC 60.079 63.158 0.00 0.00 32.26 3.01
2250 3735 1.199615 TGAGGGACACGCCATTGATA 58.800 50.000 0.00 0.00 38.95 2.15
2304 3795 3.788766 GCGTCTTTCATGCCGCGT 61.789 61.111 4.92 0.00 36.53 6.01
2781 4272 1.304381 GTGCAGCCCCTTGGATTGA 60.304 57.895 0.00 0.00 0.00 2.57
2783 4274 1.304713 CAGTGCAGCCCCTTGGATT 60.305 57.895 0.00 0.00 0.00 3.01
2914 4552 9.736414 ATATCGACTGTATGTACCTTGTATACT 57.264 33.333 4.17 0.00 0.00 2.12
2979 4617 9.329913 CGTAGACAAACTCAAAGATTTTAATGG 57.670 33.333 0.00 0.00 0.00 3.16
2980 4618 9.329913 CCGTAGACAAACTCAAAGATTTTAATG 57.670 33.333 0.00 0.00 0.00 1.90
2985 4623 6.710744 ACATCCGTAGACAAACTCAAAGATTT 59.289 34.615 0.00 0.00 0.00 2.17
2996 4634 8.255206 ACTGACATTAATACATCCGTAGACAAA 58.745 33.333 0.00 0.00 0.00 2.83
3001 4639 5.856986 CCGACTGACATTAATACATCCGTAG 59.143 44.000 0.00 0.00 0.00 3.51
3005 4643 6.046593 TGAACCGACTGACATTAATACATCC 58.953 40.000 0.00 0.00 0.00 3.51
3006 4644 7.438160 TCATGAACCGACTGACATTAATACATC 59.562 37.037 0.00 0.00 0.00 3.06
3007 4645 7.272244 TCATGAACCGACTGACATTAATACAT 58.728 34.615 0.00 0.00 0.00 2.29
3008 4646 6.635755 TCATGAACCGACTGACATTAATACA 58.364 36.000 0.00 0.00 0.00 2.29
3009 4647 7.715265 ATCATGAACCGACTGACATTAATAC 57.285 36.000 0.00 0.00 0.00 1.89
3010 4648 9.825109 TTTATCATGAACCGACTGACATTAATA 57.175 29.630 0.00 0.00 0.00 0.98
3011 4649 8.731275 TTTATCATGAACCGACTGACATTAAT 57.269 30.769 0.00 0.00 0.00 1.40
3012 4650 8.731275 ATTTATCATGAACCGACTGACATTAA 57.269 30.769 0.00 0.00 0.00 1.40
3013 4651 8.731275 AATTTATCATGAACCGACTGACATTA 57.269 30.769 0.00 0.00 0.00 1.90
3014 4652 7.554118 AGAATTTATCATGAACCGACTGACATT 59.446 33.333 0.00 0.00 0.00 2.71
3015 4653 7.050377 AGAATTTATCATGAACCGACTGACAT 58.950 34.615 0.00 0.00 0.00 3.06
3017 4655 6.535150 TGAGAATTTATCATGAACCGACTGAC 59.465 38.462 0.00 0.00 0.00 3.51
3018 4656 6.639563 TGAGAATTTATCATGAACCGACTGA 58.360 36.000 0.00 0.00 0.00 3.41
3019 4657 6.908870 TGAGAATTTATCATGAACCGACTG 57.091 37.500 0.00 0.00 0.00 3.51
3020 4658 7.921786 TTTGAGAATTTATCATGAACCGACT 57.078 32.000 0.00 0.00 0.00 4.18
3021 4659 8.020819 TGTTTTGAGAATTTATCATGAACCGAC 58.979 33.333 0.00 0.00 0.00 4.79
3022 4660 8.105097 TGTTTTGAGAATTTATCATGAACCGA 57.895 30.769 0.00 0.00 0.00 4.69
3023 4661 7.008628 GCTGTTTTGAGAATTTATCATGAACCG 59.991 37.037 0.00 10.42 0.00 4.44
3024 4662 7.276438 GGCTGTTTTGAGAATTTATCATGAACC 59.724 37.037 0.00 2.51 0.00 3.62
3025 4663 8.031277 AGGCTGTTTTGAGAATTTATCATGAAC 58.969 33.333 0.00 11.07 0.00 3.18
3026 4664 8.125978 AGGCTGTTTTGAGAATTTATCATGAA 57.874 30.769 0.00 0.00 0.00 2.57
3027 4665 7.707624 AGGCTGTTTTGAGAATTTATCATGA 57.292 32.000 0.00 0.00 0.00 3.07
3028 4666 8.767478 AAAGGCTGTTTTGAGAATTTATCATG 57.233 30.769 0.00 0.00 0.00 3.07
3029 4667 7.756722 CGAAAGGCTGTTTTGAGAATTTATCAT 59.243 33.333 0.00 0.00 0.00 2.45
3030 4668 7.083858 CGAAAGGCTGTTTTGAGAATTTATCA 58.916 34.615 0.00 0.00 0.00 2.15
3031 4669 6.033937 GCGAAAGGCTGTTTTGAGAATTTATC 59.966 38.462 0.00 0.00 39.11 1.75
3036 4674 3.288809 GCGAAAGGCTGTTTTGAGAAT 57.711 42.857 0.00 0.00 39.11 2.40
3102 4740 6.951971 ACCTACTTGCTTACAGATTTCTCAT 58.048 36.000 0.00 0.00 0.00 2.90
3103 4741 6.360370 ACCTACTTGCTTACAGATTTCTCA 57.640 37.500 0.00 0.00 0.00 3.27
3114 4753 9.669887 TTATTTTATTTCCGACCTACTTGCTTA 57.330 29.630 0.00 0.00 0.00 3.09
3117 4756 9.069078 GTTTTATTTTATTTCCGACCTACTTGC 57.931 33.333 0.00 0.00 0.00 4.01
3127 4766 5.172411 CGGATGCCGTTTTATTTTATTTCCG 59.828 40.000 0.00 0.00 42.73 4.30
3133 4772 4.008330 TGTCCGGATGCCGTTTTATTTTA 58.992 39.130 7.81 0.00 46.80 1.52
3170 4917 1.086696 CACTCAGTATTGGGTTGGCG 58.913 55.000 0.00 0.00 35.24 5.69
3181 4928 6.046593 CCTGTGTTTGTTTCTACACTCAGTA 58.953 40.000 0.00 0.00 43.82 2.74
3183 4930 5.116180 TCCTGTGTTTGTTTCTACACTCAG 58.884 41.667 0.00 0.00 43.82 3.35
3184 4931 5.092554 TCCTGTGTTTGTTTCTACACTCA 57.907 39.130 0.00 0.00 43.82 3.41
3192 4939 5.531287 AGGTTGTATCTCCTGTGTTTGTTTC 59.469 40.000 0.00 0.00 32.29 2.78
3195 4942 4.348168 AGAGGTTGTATCTCCTGTGTTTGT 59.652 41.667 0.00 0.00 33.83 2.83
3196 4943 4.899502 AGAGGTTGTATCTCCTGTGTTTG 58.100 43.478 0.00 0.00 33.83 2.93
3197 4944 6.042781 TGTTAGAGGTTGTATCTCCTGTGTTT 59.957 38.462 0.00 0.00 33.83 2.83
3198 4945 5.542635 TGTTAGAGGTTGTATCTCCTGTGTT 59.457 40.000 0.00 0.00 33.83 3.32
3199 4946 5.084519 TGTTAGAGGTTGTATCTCCTGTGT 58.915 41.667 0.00 0.00 33.83 3.72
3200 4947 5.661056 TGTTAGAGGTTGTATCTCCTGTG 57.339 43.478 0.00 0.00 33.83 3.66
3201 4948 6.895756 TGTATGTTAGAGGTTGTATCTCCTGT 59.104 38.462 0.00 0.00 33.83 4.00
3209 4956 8.832521 CACTTTTGTTGTATGTTAGAGGTTGTA 58.167 33.333 0.00 0.00 0.00 2.41
3212 4959 7.773690 AGTCACTTTTGTTGTATGTTAGAGGTT 59.226 33.333 0.00 0.00 0.00 3.50
3223 4970 7.773864 TTGTTCGATAGTCACTTTTGTTGTA 57.226 32.000 0.00 0.00 37.40 2.41
3232 4979 5.147330 TCCAACATTGTTCGATAGTCACT 57.853 39.130 0.00 0.00 37.40 3.41
3234 4981 5.547465 AGTTCCAACATTGTTCGATAGTCA 58.453 37.500 0.00 0.00 37.40 3.41
3251 4998 1.302192 GCAAGGTGGCGTAGTTCCA 60.302 57.895 0.00 0.00 0.00 3.53
3258 5005 2.594592 GGTCTTGCAAGGTGGCGT 60.595 61.111 25.73 0.00 36.28 5.68
3286 5033 1.978542 CTCAGTGTGCGTGGTACTAC 58.021 55.000 0.00 0.00 0.00 2.73
3302 5049 1.383664 CCCCTCTGGAGATGGCTCA 60.384 63.158 0.00 0.00 43.14 4.26
3325 5072 1.810030 GCCAGTCTTAACGGCGAGG 60.810 63.158 16.62 3.05 36.09 4.63
3335 5082 2.516048 TAGAGCGAGGGGCCAGTCTT 62.516 60.000 4.39 0.00 45.17 3.01
3354 5135 2.526873 AGAGGCGGTCCACAACCT 60.527 61.111 0.00 0.00 46.87 3.50
3449 5361 2.562296 AGGAGAAAAGGGTGAGCCATA 58.438 47.619 2.50 0.00 36.17 2.74
3478 5392 0.684153 CCTCCATTGGCGATTTGGGT 60.684 55.000 0.00 0.00 0.00 4.51
3506 5420 0.668535 GAAGGCCAACCACAAGTGAC 59.331 55.000 5.01 0.00 39.06 3.67
3551 5466 4.980805 TGGTGTGCTCCGGCGAAC 62.981 66.667 9.30 0.00 42.25 3.95
3555 5470 3.127533 GATGTGGTGTGCTCCGGC 61.128 66.667 0.00 0.00 39.26 6.13
3574 5489 0.392595 AATTTCCCGGAAGCGGTCTC 60.393 55.000 0.73 0.00 0.00 3.36
3577 5492 1.279846 TCTTAATTTCCCGGAAGCGGT 59.720 47.619 0.73 0.00 0.00 5.68
3578 5493 1.669265 GTCTTAATTTCCCGGAAGCGG 59.331 52.381 0.73 0.00 0.00 5.52
3586 5501 6.563037 AGGAAGTAGGAGTCTTAATTTCCC 57.437 41.667 16.80 7.33 34.74 3.97
3616 5531 7.839680 AAATTGTTACTCTTGGAGATTTGGT 57.160 32.000 1.31 0.00 33.32 3.67
3619 5534 8.143835 CACCAAAATTGTTACTCTTGGAGATTT 58.856 33.333 9.30 0.00 39.12 2.17
3640 5555 2.632512 TCAGCTACACAGTCATCACCAA 59.367 45.455 0.00 0.00 0.00 3.67
3659 5574 2.482336 CACCAAACCGAATCGTGATTCA 59.518 45.455 19.47 0.00 45.60 2.57
3684 5599 6.042777 TGAAAGATGAACCATCGATCTACAC 58.957 40.000 0.00 0.00 44.67 2.90
3721 5636 1.064611 TCTTCCAACGAAACCCCACAA 60.065 47.619 0.00 0.00 0.00 3.33
3727 5642 5.242171 TCCCTTTTATTCTTCCAACGAAACC 59.758 40.000 0.00 0.00 0.00 3.27
3775 5690 3.988379 TCATTTGAGTTGCTTCACCAC 57.012 42.857 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.