Multiple sequence alignment - TraesCS5A01G286100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G286100 chr5A 100.000 7469 0 0 1 7469 493828442 493835910 0.000000e+00 13793.0
1 TraesCS5A01G286100 chr5A 87.117 326 34 4 3127 3449 586312328 586312008 5.510000e-96 363.0
2 TraesCS5A01G286100 chr5A 75.000 300 73 2 5943 6241 680088275 680088573 3.630000e-28 137.0
3 TraesCS5A01G286100 chr5A 94.828 58 3 0 6814 6871 493835130 493835187 2.870000e-14 91.6
4 TraesCS5A01G286100 chr5A 94.828 58 3 0 6689 6746 493835255 493835312 2.870000e-14 91.6
5 TraesCS5A01G286100 chr5A 89.552 67 7 0 6634 6700 565246206 565246272 1.340000e-12 86.1
6 TraesCS5A01G286100 chr5A 85.333 75 11 0 1 75 591099719 591099645 2.230000e-10 78.7
7 TraesCS5A01G286100 chr5A 86.207 58 6 2 1 57 477686731 477686675 2.250000e-05 62.1
8 TraesCS5A01G286100 chr5A 100.000 30 0 0 6881 6910 242949192 242949163 1.000000e-03 56.5
9 TraesCS5A01G286100 chr5D 91.683 1575 63 21 5934 7469 390566251 390567796 0.000000e+00 2121.0
10 TraesCS5A01G286100 chr5D 87.523 1635 127 34 4964 6544 390550128 390548517 0.000000e+00 1818.0
11 TraesCS5A01G286100 chr5D 94.118 918 41 9 4952 5863 390565344 390566254 0.000000e+00 1384.0
12 TraesCS5A01G286100 chr5D 87.113 1001 87 26 2024 3014 390551325 390550357 0.000000e+00 1096.0
13 TraesCS5A01G286100 chr5D 88.124 741 52 22 2393 3123 390564567 390565281 0.000000e+00 848.0
14 TraesCS5A01G286100 chr5D 82.503 903 107 36 1590 2475 390563700 390564568 0.000000e+00 745.0
15 TraesCS5A01G286100 chr5D 88.554 498 31 14 2044 2534 390555708 390555230 1.400000e-161 580.0
16 TraesCS5A01G286100 chr5D 78.713 855 78 49 750 1569 390562849 390563634 6.780000e-130 475.0
17 TraesCS5A01G286100 chr5D 81.006 616 91 17 1 599 468355318 468354712 4.080000e-127 466.0
18 TraesCS5A01G286100 chr5D 81.409 511 77 17 130 635 232459449 232458952 1.170000e-107 401.0
19 TraesCS5A01G286100 chr5D 91.209 182 14 2 3453 3633 468105117 468104937 5.790000e-61 246.0
20 TraesCS5A01G286100 chr5D 80.108 372 31 17 837 1206 390553068 390552738 3.480000e-58 237.0
21 TraesCS5A01G286100 chr5D 88.462 182 17 3 3453 3633 113489695 113489873 4.540000e-52 217.0
22 TraesCS5A01G286100 chr5D 88.435 147 16 1 3112 3257 412100088 412100234 7.700000e-40 176.0
23 TraesCS5A01G286100 chr5D 83.648 159 14 6 1377 1533 390552568 390552420 1.010000e-28 139.0
24 TraesCS5A01G286100 chr5D 83.459 133 13 5 1849 1973 390551900 390551769 1.700000e-21 115.0
25 TraesCS5A01G286100 chr5D 97.368 38 1 0 6709 6746 390567152 390567189 1.740000e-06 65.8
26 TraesCS5A01G286100 chr5D 93.023 43 2 1 4849 4890 554813 554855 2.250000e-05 62.1
27 TraesCS5A01G286100 chr1A 92.142 1298 93 6 3453 4742 568336517 568337813 0.000000e+00 1823.0
28 TraesCS5A01G286100 chr1A 79.491 668 108 24 8 656 60958006 60957349 1.480000e-121 448.0
29 TraesCS5A01G286100 chr5B 94.103 1204 36 12 5934 7112 470648713 470649906 0.000000e+00 1797.0
30 TraesCS5A01G286100 chr5B 87.630 1439 101 26 5696 7085 470704686 470703276 0.000000e+00 1600.0
31 TraesCS5A01G286100 chr5B 87.410 977 77 20 2041 3014 470706601 470705668 0.000000e+00 1081.0
32 TraesCS5A01G286100 chr5B 87.430 899 58 21 2113 3008 470646843 470647689 0.000000e+00 983.0
33 TraesCS5A01G286100 chr5B 83.490 745 81 33 4918 5639 470705643 470704918 0.000000e+00 656.0
34 TraesCS5A01G286100 chr5B 92.026 464 20 4 5402 5863 470648268 470648716 2.940000e-178 636.0
35 TraesCS5A01G286100 chr5B 80.675 652 101 13 1 635 554646230 554645587 4.050000e-132 483.0
36 TraesCS5A01G286100 chr5B 85.057 435 49 10 4933 5356 470647823 470648252 5.350000e-116 429.0
37 TraesCS5A01G286100 chr5B 88.462 338 29 3 7075 7402 470702969 470702632 4.200000e-107 399.0
38 TraesCS5A01G286100 chr5B 90.588 255 21 1 7195 7449 470649905 470650156 1.200000e-87 335.0
39 TraesCS5A01G286100 chr5B 79.730 296 47 11 3448 3730 628813000 628813295 1.270000e-47 202.0
40 TraesCS5A01G286100 chr5B 76.456 395 44 29 737 1106 470645082 470645452 1.290000e-37 169.0
41 TraesCS5A01G286100 chr5B 84.828 145 12 6 1860 1999 470646149 470646288 3.630000e-28 137.0
42 TraesCS5A01G286100 chr5B 84.828 145 12 6 1860 1999 470706809 470706670 3.630000e-28 137.0
43 TraesCS5A01G286100 chr5B 85.593 118 13 4 1643 1760 470645949 470646062 3.660000e-23 121.0
44 TraesCS5A01G286100 chr5B 97.222 36 1 0 6709 6744 470703531 470703496 2.250000e-05 62.1
45 TraesCS5A01G286100 chr5B 91.304 46 2 2 4857 4902 577234324 577234367 2.250000e-05 62.1
46 TraesCS5A01G286100 chr5B 97.143 35 1 0 6697 6731 470703608 470703574 8.090000e-05 60.2
47 TraesCS5A01G286100 chr5B 97.059 34 1 0 6823 6856 470703607 470703574 2.910000e-04 58.4
48 TraesCS5A01G286100 chr7D 91.525 1298 88 15 3453 4742 634666337 634665054 0.000000e+00 1768.0
49 TraesCS5A01G286100 chr7D 80.945 656 93 20 1 635 415790015 415789371 2.420000e-134 490.0
50 TraesCS5A01G286100 chr7D 81.199 617 88 13 2 599 210056275 210056882 8.770000e-129 472.0
51 TraesCS5A01G286100 chr7D 80.682 616 96 14 1 614 626283475 626282881 2.460000e-124 457.0
52 TraesCS5A01G286100 chr7D 79.049 673 109 16 1 653 568062605 568063265 4.140000e-117 433.0
53 TraesCS5A01G286100 chr7D 78.803 618 98 12 1 599 234211190 234210587 1.180000e-102 385.0
54 TraesCS5A01G286100 chr7D 94.872 195 10 0 3258 3452 539381773 539381967 9.420000e-79 305.0
55 TraesCS5A01G286100 chr7D 83.158 285 35 10 3453 3734 18091816 18092090 1.610000e-61 248.0
56 TraesCS5A01G286100 chr7D 73.056 553 117 19 5943 6467 58483251 58483799 4.640000e-37 167.0
57 TraesCS5A01G286100 chr7D 93.023 43 2 1 4855 4896 226497733 226497691 2.250000e-05 62.1
58 TraesCS5A01G286100 chr7D 92.683 41 3 0 4857 4897 21838326 21838366 8.090000e-05 60.2
59 TraesCS5A01G286100 chr3B 90.608 1299 100 14 3453 4742 41354681 41353396 0.000000e+00 1703.0
60 TraesCS5A01G286100 chr3B 90.665 782 66 5 3961 4742 662471180 662471954 0.000000e+00 1033.0
61 TraesCS5A01G286100 chr3B 89.573 796 66 9 3960 4742 732426673 732425882 0.000000e+00 994.0
62 TraesCS5A01G286100 chr3B 89.683 378 24 7 3453 3819 732427043 732426670 1.130000e-127 468.0
63 TraesCS5A01G286100 chr3B 96.939 196 6 0 3257 3452 592595915 592595720 5.590000e-86 329.0
64 TraesCS5A01G286100 chr3B 90.541 74 7 0 1 74 244657275 244657202 1.720000e-16 99.0
65 TraesCS5A01G286100 chr3B 91.489 47 1 2 4857 4901 303877860 303877815 2.250000e-05 62.1
66 TraesCS5A01G286100 chr7A 90.586 1296 87 13 3453 4743 117757461 117758726 0.000000e+00 1685.0
67 TraesCS5A01G286100 chr7A 82.055 652 90 15 1 635 507872425 507873066 1.430000e-146 531.0
68 TraesCS5A01G286100 chr7A 79.911 672 103 19 1 651 420663220 420662560 1.470000e-126 464.0
69 TraesCS5A01G286100 chr7A 80.897 602 87 13 53 635 65088573 65087981 4.110000e-122 449.0
70 TraesCS5A01G286100 chr7A 93.137 204 14 0 3249 3452 692626463 692626260 4.380000e-77 300.0
71 TraesCS5A01G286100 chr7A 78.157 293 62 2 5943 6234 251839767 251840058 1.280000e-42 185.0
72 TraesCS5A01G286100 chr7A 73.140 551 120 16 5943 6467 62826558 62827106 9.960000e-39 172.0
73 TraesCS5A01G286100 chr7A 80.769 104 14 5 5731 5831 251839509 251839609 8.040000e-10 76.8
74 TraesCS5A01G286100 chr2A 90.419 1002 76 10 3453 4445 759839187 759840177 0.000000e+00 1301.0
75 TraesCS5A01G286100 chr2A 80.916 655 96 14 1 635 518344836 518344191 2.420000e-134 490.0
76 TraesCS5A01G286100 chr2A 81.627 332 53 6 3120 3444 597847670 597848000 1.240000e-67 268.0
77 TraesCS5A01G286100 chr2A 85.950 121 17 0 4743 4863 735242566 735242686 6.080000e-26 130.0
78 TraesCS5A01G286100 chr2A 85.124 121 17 1 4743 4863 523452063 523452182 1.020000e-23 122.0
79 TraesCS5A01G286100 chr2A 84.034 119 19 0 4745 4863 581160563 581160445 1.700000e-21 115.0
80 TraesCS5A01G286100 chr2A 74.719 178 34 10 6881 7051 659703313 659703140 1.340000e-07 69.4
81 TraesCS5A01G286100 chr2B 91.199 784 65 3 3961 4742 685820613 685819832 0.000000e+00 1062.0
82 TraesCS5A01G286100 chr2B 90.166 783 58 8 3960 4742 93439675 93440438 0.000000e+00 1002.0
83 TraesCS5A01G286100 chr2B 89.488 371 25 8 3453 3816 93439312 93439675 2.460000e-124 457.0
84 TraesCS5A01G286100 chr2B 83.071 508 75 10 130 635 246369842 246369344 1.140000e-122 451.0
85 TraesCS5A01G286100 chr2B 89.189 370 24 8 3453 3815 685820975 685820615 1.480000e-121 448.0
86 TraesCS5A01G286100 chr2B 89.362 47 3 2 4850 4895 37886437 37886392 2.910000e-04 58.4
87 TraesCS5A01G286100 chr6A 91.460 726 24 9 3453 4171 599824382 599825076 0.000000e+00 963.0
88 TraesCS5A01G286100 chr6A 96.303 541 17 2 4202 4742 599825376 599825913 0.000000e+00 885.0
89 TraesCS5A01G286100 chr6A 95.361 194 8 1 3259 3452 595676232 595676040 2.620000e-79 307.0
90 TraesCS5A01G286100 chr6A 73.016 315 71 11 7024 7325 484396383 484396070 1.720000e-16 99.0
91 TraesCS5A01G286100 chr6A 97.561 41 1 0 6704 6744 484396599 484396559 3.740000e-08 71.3
92 TraesCS5A01G286100 chr1B 83.866 688 70 25 3453 4131 655907561 655906906 1.060000e-172 617.0
93 TraesCS5A01G286100 chr1B 80.275 654 100 15 1 635 522396595 522395952 4.080000e-127 466.0
94 TraesCS5A01G286100 chr1B 82.249 338 48 9 3114 3444 645517311 645517643 1.590000e-71 281.0
95 TraesCS5A01G286100 chr1B 100.000 30 0 0 6600 6629 323292806 323292835 1.000000e-03 56.5
96 TraesCS5A01G286100 chr2D 81.498 654 87 15 1 635 383562763 383562125 2.400000e-139 507.0
97 TraesCS5A01G286100 chr2D 77.003 674 126 14 1 656 30465813 30465151 7.130000e-95 359.0
98 TraesCS5A01G286100 chr2D 82.781 302 41 8 336 635 601030210 601030502 7.430000e-65 259.0
99 TraesCS5A01G286100 chr2D 86.364 66 9 0 2 67 602662420 602662485 1.040000e-08 73.1
100 TraesCS5A01G286100 chr2D 95.122 41 1 1 4855 4894 386952306 386952266 6.260000e-06 63.9
101 TraesCS5A01G286100 chr2D 100.000 29 0 0 6883 6911 305615064 305615036 4.000000e-03 54.7
102 TraesCS5A01G286100 chr6D 80.660 667 97 19 1 647 346711779 346711125 8.710000e-134 488.0
103 TraesCS5A01G286100 chr6D 80.414 628 94 15 1 609 111956336 111956953 1.140000e-122 451.0
104 TraesCS5A01G286100 chr6D 83.296 443 68 5 193 635 398731275 398731711 3.250000e-108 403.0
105 TraesCS5A01G286100 chr6D 80.671 507 85 12 134 637 317118399 317117903 1.520000e-101 381.0
106 TraesCS5A01G286100 chr6D 82.353 323 48 7 123 444 49447254 49447568 9.550000e-69 272.0
107 TraesCS5A01G286100 chr6D 82.288 271 46 2 339 609 428542138 428541870 4.510000e-57 233.0
108 TraesCS5A01G286100 chr6D 81.159 276 42 8 3453 3720 89301369 89301096 5.870000e-51 213.0
109 TraesCS5A01G286100 chr6D 91.026 156 13 1 3453 3607 51360762 51360607 7.590000e-50 209.0
110 TraesCS5A01G286100 chr6D 80.797 276 43 9 3453 3720 68091028 68091301 2.730000e-49 207.0
111 TraesCS5A01G286100 chr6D 86.813 182 22 2 3453 3633 438000606 438000786 1.270000e-47 202.0
112 TraesCS5A01G286100 chr6D 88.608 158 17 1 3452 3608 308889535 308889692 2.750000e-44 191.0
113 TraesCS5A01G286100 chr6D 86.538 156 19 2 3453 3607 51352178 51352332 3.580000e-38 171.0
114 TraesCS5A01G286100 chr6D 80.723 166 26 5 3118 3278 129946311 129946475 2.830000e-24 124.0
115 TraesCS5A01G286100 chr6D 73.171 410 81 23 6937 7324 343966215 343965813 3.660000e-23 121.0
116 TraesCS5A01G286100 chr6D 93.750 64 4 0 550 613 428541870 428541807 6.170000e-16 97.1
117 TraesCS5A01G286100 chr6D 97.561 41 1 0 6704 6744 343966342 343966302 3.740000e-08 71.3
118 TraesCS5A01G286100 chr4B 80.389 668 101 14 8 656 539500501 539499845 1.460000e-131 481.0
119 TraesCS5A01G286100 chr4B 80.365 657 99 16 1 637 20302534 20303180 8.770000e-129 472.0
120 TraesCS5A01G286100 chr4B 82.851 484 74 9 130 612 616753962 616753487 6.930000e-115 425.0
121 TraesCS5A01G286100 chr4B 82.062 485 75 11 130 613 33347890 33347417 3.250000e-108 403.0
122 TraesCS5A01G286100 chr4B 90.000 140 14 0 3118 3257 502957287 502957148 1.660000e-41 182.0
123 TraesCS5A01G286100 chr4B 86.047 129 16 2 4743 4870 633325044 633325171 3.630000e-28 137.0
124 TraesCS5A01G286100 chr4B 100.000 35 0 0 4855 4889 568238226 568238260 1.740000e-06 65.8
125 TraesCS5A01G286100 chr4B 92.683 41 3 0 17 57 566592923 566592963 8.090000e-05 60.2
126 TraesCS5A01G286100 chr3D 81.141 631 83 22 1 613 372321830 372322442 2.440000e-129 473.0
127 TraesCS5A01G286100 chr3D 87.589 282 29 5 3453 3730 439829074 439829353 9.350000e-84 322.0
128 TraesCS5A01G286100 chr3D 83.636 275 39 5 3453 3722 120748420 120748147 3.460000e-63 254.0
129 TraesCS5A01G286100 chr3D 82.699 289 39 10 3453 3733 585095549 585095264 5.790000e-61 246.0
130 TraesCS5A01G286100 chr4D 80.061 652 106 16 1 635 319274379 319273735 5.280000e-126 462.0
131 TraesCS5A01G286100 chr4D 79.403 636 88 19 1 613 44430345 44429730 6.980000e-110 409.0
132 TraesCS5A01G286100 chr4D 84.452 283 37 5 3453 3730 196878429 196878149 9.550000e-69 272.0
133 TraesCS5A01G286100 chr4D 90.270 185 14 2 3453 3633 196877012 196877196 9.690000e-59 239.0
134 TraesCS5A01G286100 chr4D 82.374 278 40 8 3453 3724 413035530 413035804 4.510000e-57 233.0
135 TraesCS5A01G286100 chr4D 82.530 166 24 4 3118 3278 108321091 108321256 2.810000e-29 141.0
136 TraesCS5A01G286100 chr4D 85.870 92 12 1 509 599 1241220 1241311 6.170000e-16 97.1
137 TraesCS5A01G286100 chr6B 87.021 339 34 8 3121 3452 678207635 678207970 2.540000e-99 374.0
138 TraesCS5A01G286100 chr6B 84.783 322 44 5 3135 3452 678359596 678359916 1.210000e-82 318.0
139 TraesCS5A01G286100 chr6B 84.364 275 37 6 3453 3722 82323463 82323190 1.600000e-66 265.0
140 TraesCS5A01G286100 chr6B 91.304 138 11 1 3121 3257 678551126 678550989 3.560000e-43 187.0
141 TraesCS5A01G286100 chr6B 90.580 138 12 1 3121 3257 119526809 119526946 1.660000e-41 182.0
142 TraesCS5A01G286100 chr6B 80.597 134 23 3 7024 7155 519200133 519200001 4.770000e-17 100.0
143 TraesCS5A01G286100 chr6B 97.561 41 1 0 6704 6744 519200345 519200305 3.740000e-08 71.3
144 TraesCS5A01G286100 chr1D 76.514 677 125 20 1 656 462748427 462747764 9.280000e-89 339.0
145 TraesCS5A01G286100 chr1D 79.355 465 68 16 16 462 447376255 447375801 1.220000e-77 302.0
146 TraesCS5A01G286100 chr1D 82.105 285 44 5 3449 3728 9388143 9387861 3.480000e-58 237.0
147 TraesCS5A01G286100 chr1D 80.797 276 43 9 3453 3720 370915120 370915393 2.730000e-49 207.0
148 TraesCS5A01G286100 chr1D 89.172 157 15 2 3453 3608 411190944 411190789 2.130000e-45 195.0
149 TraesCS5A01G286100 chr1D 81.319 182 31 3 3453 3632 124774840 124774660 2.170000e-30 145.0
150 TraesCS5A01G286100 chr1D 100.000 30 0 0 6600 6629 223742232 223742261 1.000000e-03 56.5
151 TraesCS5A01G286100 chr4A 73.684 551 117 16 5943 6467 674909276 674909824 9.890000e-44 189.0
152 TraesCS5A01G286100 chr4A 97.297 37 1 0 4857 4893 729053734 729053770 6.260000e-06 63.9
153 TraesCS5A01G286100 chr3A 90.909 121 11 0 4743 4863 102529712 102529832 6.000000e-36 163.0
154 TraesCS5A01G286100 chr7B 80.392 102 18 2 5731 5831 213417590 213417690 8.040000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G286100 chr5A 493828442 493835910 7468 False 4658.733333 13793 96.552000 1 7469 3 chr5A.!!$F3 7468
1 TraesCS5A01G286100 chr5D 390562849 390567796 4947 False 939.800000 2121 88.751500 750 7469 6 chr5D.!!$F4 6719
2 TraesCS5A01G286100 chr5D 390548517 390555708 7191 True 664.166667 1818 85.067500 837 6544 6 chr5D.!!$R4 5707
3 TraesCS5A01G286100 chr5D 468354712 468355318 606 True 466.000000 466 81.006000 1 599 1 chr5D.!!$R3 598
4 TraesCS5A01G286100 chr1A 568336517 568337813 1296 False 1823.000000 1823 92.142000 3453 4742 1 chr1A.!!$F1 1289
5 TraesCS5A01G286100 chr1A 60957349 60958006 657 True 448.000000 448 79.491000 8 656 1 chr1A.!!$R1 648
6 TraesCS5A01G286100 chr5B 470645082 470650156 5074 False 575.875000 1797 87.010125 737 7449 8 chr5B.!!$F3 6712
7 TraesCS5A01G286100 chr5B 470702632 470706809 4177 True 506.712500 1600 90.405500 1860 7402 8 chr5B.!!$R2 5542
8 TraesCS5A01G286100 chr5B 554645587 554646230 643 True 483.000000 483 80.675000 1 635 1 chr5B.!!$R1 634
9 TraesCS5A01G286100 chr7D 634665054 634666337 1283 True 1768.000000 1768 91.525000 3453 4742 1 chr7D.!!$R5 1289
10 TraesCS5A01G286100 chr7D 415789371 415790015 644 True 490.000000 490 80.945000 1 635 1 chr7D.!!$R3 634
11 TraesCS5A01G286100 chr7D 210056275 210056882 607 False 472.000000 472 81.199000 2 599 1 chr7D.!!$F4 597
12 TraesCS5A01G286100 chr7D 626282881 626283475 594 True 457.000000 457 80.682000 1 614 1 chr7D.!!$R4 613
13 TraesCS5A01G286100 chr7D 568062605 568063265 660 False 433.000000 433 79.049000 1 653 1 chr7D.!!$F6 652
14 TraesCS5A01G286100 chr7D 234210587 234211190 603 True 385.000000 385 78.803000 1 599 1 chr7D.!!$R2 598
15 TraesCS5A01G286100 chr3B 41353396 41354681 1285 True 1703.000000 1703 90.608000 3453 4742 1 chr3B.!!$R1 1289
16 TraesCS5A01G286100 chr3B 662471180 662471954 774 False 1033.000000 1033 90.665000 3961 4742 1 chr3B.!!$F1 781
17 TraesCS5A01G286100 chr3B 732425882 732427043 1161 True 731.000000 994 89.628000 3453 4742 2 chr3B.!!$R5 1289
18 TraesCS5A01G286100 chr7A 117757461 117758726 1265 False 1685.000000 1685 90.586000 3453 4743 1 chr7A.!!$F2 1290
19 TraesCS5A01G286100 chr7A 507872425 507873066 641 False 531.000000 531 82.055000 1 635 1 chr7A.!!$F3 634
20 TraesCS5A01G286100 chr7A 420662560 420663220 660 True 464.000000 464 79.911000 1 651 1 chr7A.!!$R2 650
21 TraesCS5A01G286100 chr7A 65087981 65088573 592 True 449.000000 449 80.897000 53 635 1 chr7A.!!$R1 582
22 TraesCS5A01G286100 chr2A 759839187 759840177 990 False 1301.000000 1301 90.419000 3453 4445 1 chr2A.!!$F4 992
23 TraesCS5A01G286100 chr2A 518344191 518344836 645 True 490.000000 490 80.916000 1 635 1 chr2A.!!$R1 634
24 TraesCS5A01G286100 chr2B 685819832 685820975 1143 True 755.000000 1062 90.194000 3453 4742 2 chr2B.!!$R3 1289
25 TraesCS5A01G286100 chr2B 93439312 93440438 1126 False 729.500000 1002 89.827000 3453 4742 2 chr2B.!!$F1 1289
26 TraesCS5A01G286100 chr6A 599824382 599825913 1531 False 924.000000 963 93.881500 3453 4742 2 chr6A.!!$F1 1289
27 TraesCS5A01G286100 chr1B 655906906 655907561 655 True 617.000000 617 83.866000 3453 4131 1 chr1B.!!$R2 678
28 TraesCS5A01G286100 chr1B 522395952 522396595 643 True 466.000000 466 80.275000 1 635 1 chr1B.!!$R1 634
29 TraesCS5A01G286100 chr2D 383562125 383562763 638 True 507.000000 507 81.498000 1 635 1 chr2D.!!$R3 634
30 TraesCS5A01G286100 chr2D 30465151 30465813 662 True 359.000000 359 77.003000 1 656 1 chr2D.!!$R1 655
31 TraesCS5A01G286100 chr6D 346711125 346711779 654 True 488.000000 488 80.660000 1 647 1 chr6D.!!$R4 646
32 TraesCS5A01G286100 chr6D 111956336 111956953 617 False 451.000000 451 80.414000 1 609 1 chr6D.!!$F4 608
33 TraesCS5A01G286100 chr4B 539499845 539500501 656 True 481.000000 481 80.389000 8 656 1 chr4B.!!$R3 648
34 TraesCS5A01G286100 chr4B 20302534 20303180 646 False 472.000000 472 80.365000 1 637 1 chr4B.!!$F1 636
35 TraesCS5A01G286100 chr3D 372321830 372322442 612 False 473.000000 473 81.141000 1 613 1 chr3D.!!$F1 612
36 TraesCS5A01G286100 chr4D 319273735 319274379 644 True 462.000000 462 80.061000 1 635 1 chr4D.!!$R3 634
37 TraesCS5A01G286100 chr4D 44429730 44430345 615 True 409.000000 409 79.403000 1 613 1 chr4D.!!$R1 612
38 TraesCS5A01G286100 chr1D 462747764 462748427 663 True 339.000000 339 76.514000 1 656 1 chr1D.!!$R5 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 838 0.179100 ATCACCGCGAATGTCCTCTG 60.179 55.000 8.23 0.00 0.00 3.35 F
1019 2862 0.043940 ATGAGAGGAGGAGGCAACCT 59.956 55.000 3.00 3.00 43.64 3.50 F
1300 3174 0.105039 CTCGCACCTCTGATTACCCC 59.895 60.000 0.00 0.00 0.00 4.95 F
1313 3187 0.758734 TTACCCCGCTCCATGAGATG 59.241 55.000 0.00 0.00 0.00 2.90 F
2367 4996 0.812412 GCTCGGCGCCAATAAAGGTA 60.812 55.000 28.98 0.00 0.00 3.08 F
3126 5865 0.912486 AGGCCATGACAAGTACTCCC 59.088 55.000 5.01 0.00 0.00 4.30 F
3650 6396 0.105408 ACCGCTTAACACCTCACGTT 59.895 50.000 0.00 0.00 0.00 3.99 F
3651 6397 1.340889 ACCGCTTAACACCTCACGTTA 59.659 47.619 0.00 0.00 0.00 3.18 F
4908 7967 0.967662 CCATGGGTGCATGTGTTTGA 59.032 50.000 2.85 0.00 0.00 2.69 F
5392 8668 0.161024 CGAAAACGCGTCCTTCAGAC 59.839 55.000 24.97 7.33 42.54 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2707 5423 0.456142 TCGCGAAGACGATCCTGTTG 60.456 55.000 6.20 0.00 42.66 3.33 R
2925 5650 1.207811 CCTTTCATGCCCCATTCAACC 59.792 52.381 0.00 0.00 0.00 3.77 R
3251 5990 2.755952 ACCAAAGAAGGCCTGTCTTT 57.244 45.000 25.08 25.08 44.30 2.52 R
3257 5996 3.596500 ACCCTATAAACCAAAGAAGGCCT 59.403 43.478 0.00 0.00 0.00 5.19 R
3650 6396 0.322322 AACGTCCCAAACATCGCCTA 59.678 50.000 0.00 0.00 0.00 3.93 R
4376 7428 0.344790 ACCATCCCTCACCCAGATCT 59.655 55.000 0.00 0.00 0.00 2.75 R
4879 7938 0.468648 GCACCCATGGTAGTACTCCC 59.531 60.000 11.73 0.00 32.11 4.30 R
5072 8297 1.199327 CAGTCGCTCTTCGTAGGACAA 59.801 52.381 1.18 0.00 39.67 3.18 R
5895 9487 1.799181 CGAGGTTAGCTGTGACCATCG 60.799 57.143 15.41 15.50 38.42 3.84 R
7085 11041 0.250295 CAACCACCACGTCCATGACT 60.250 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 129 1.076332 GACCGTGACTACAACATGGC 58.924 55.000 0.00 0.00 45.22 4.40
152 180 2.507110 ATCCTCAGTGGGCGACGTTG 62.507 60.000 0.00 0.00 36.20 4.10
231 262 1.339097 AGCAACTAGGAAGGTCGTGT 58.661 50.000 0.00 0.00 0.00 4.49
249 282 3.675225 CGTGTAGAGGGCATTCGAATATG 59.325 47.826 10.97 1.94 0.00 1.78
250 283 3.997021 GTGTAGAGGGCATTCGAATATGG 59.003 47.826 10.97 0.00 0.00 2.74
251 284 3.646162 TGTAGAGGGCATTCGAATATGGT 59.354 43.478 10.97 0.00 0.00 3.55
326 360 0.798776 CTTTGTGACAGCCGATGACC 59.201 55.000 0.00 0.00 0.00 4.02
334 368 2.264794 GCCGATGACCCGTTGTCT 59.735 61.111 4.27 0.00 44.75 3.41
381 416 2.102420 TGATAAGGGTGATGGTGTAGCG 59.898 50.000 0.00 0.00 0.00 4.26
424 459 1.938585 TGGAGAACCAGTCCGAATCT 58.061 50.000 0.00 0.00 41.77 2.40
438 474 3.932545 CGAATCTCGGAAGATCCAGAT 57.067 47.619 0.00 2.23 41.54 2.90
462 499 4.237724 GCAAACCAGCTTATGAACTTTCC 58.762 43.478 0.00 0.00 0.00 3.13
482 519 4.862350 TCCGCATATGCATTGAAATCTTG 58.138 39.130 26.52 6.21 42.21 3.02
541 578 0.391130 TGAAGCATACGTGGGCTCAC 60.391 55.000 6.66 6.66 40.01 3.51
629 674 7.970061 TCTGTATTTTTAGCATCAGCATTTGTC 59.030 33.333 0.00 0.00 45.49 3.18
637 682 5.047847 AGCATCAGCATTTGTCATTTATGC 58.952 37.500 0.00 0.00 45.49 3.14
643 688 5.365766 GCATTTGTCATTTATGCTTGACG 57.634 39.130 0.00 0.00 44.11 4.35
659 704 3.339731 CGTTGCCGTGTGTGGATT 58.660 55.556 0.00 0.00 0.00 3.01
660 705 1.652012 CGTTGCCGTGTGTGGATTT 59.348 52.632 0.00 0.00 0.00 2.17
662 707 0.665835 GTTGCCGTGTGTGGATTTGA 59.334 50.000 0.00 0.00 0.00 2.69
663 708 1.269448 GTTGCCGTGTGTGGATTTGAT 59.731 47.619 0.00 0.00 0.00 2.57
665 710 2.355197 TGCCGTGTGTGGATTTGATAG 58.645 47.619 0.00 0.00 0.00 2.08
666 711 2.290008 TGCCGTGTGTGGATTTGATAGT 60.290 45.455 0.00 0.00 0.00 2.12
668 713 3.181510 GCCGTGTGTGGATTTGATAGTTC 60.182 47.826 0.00 0.00 0.00 3.01
669 714 3.062099 CCGTGTGTGGATTTGATAGTTCG 59.938 47.826 0.00 0.00 0.00 3.95
670 715 3.678072 CGTGTGTGGATTTGATAGTTCGT 59.322 43.478 0.00 0.00 0.00 3.85
671 716 4.860352 CGTGTGTGGATTTGATAGTTCGTA 59.140 41.667 0.00 0.00 0.00 3.43
672 717 5.518847 CGTGTGTGGATTTGATAGTTCGTAT 59.481 40.000 0.00 0.00 0.00 3.06
673 718 6.035650 CGTGTGTGGATTTGATAGTTCGTATT 59.964 38.462 0.00 0.00 0.00 1.89
674 719 7.412563 CGTGTGTGGATTTGATAGTTCGTATTT 60.413 37.037 0.00 0.00 0.00 1.40
676 721 9.438228 TGTGTGGATTTGATAGTTCGTATTTAA 57.562 29.630 0.00 0.00 0.00 1.52
677 722 9.916397 GTGTGGATTTGATAGTTCGTATTTAAG 57.084 33.333 0.00 0.00 0.00 1.85
679 724 9.321562 GTGGATTTGATAGTTCGTATTTAAGGA 57.678 33.333 0.00 0.00 0.00 3.36
680 725 9.542462 TGGATTTGATAGTTCGTATTTAAGGAG 57.458 33.333 0.00 0.00 0.00 3.69
684 729 9.932207 TTTGATAGTTCGTATTTAAGGAGAACA 57.068 29.630 8.94 0.00 42.39 3.18
685 730 9.932207 TTGATAGTTCGTATTTAAGGAGAACAA 57.068 29.630 8.94 0.00 42.39 2.83
686 731 9.362539 TGATAGTTCGTATTTAAGGAGAACAAC 57.637 33.333 8.94 1.78 42.39 3.32
687 732 9.362539 GATAGTTCGTATTTAAGGAGAACAACA 57.637 33.333 8.94 0.00 42.39 3.33
688 733 7.417496 AGTTCGTATTTAAGGAGAACAACAC 57.583 36.000 8.94 0.00 42.39 3.32
689 734 6.987992 AGTTCGTATTTAAGGAGAACAACACA 59.012 34.615 8.94 0.00 42.39 3.72
690 735 7.660208 AGTTCGTATTTAAGGAGAACAACACAT 59.340 33.333 8.94 0.00 42.39 3.21
692 737 9.661563 TTCGTATTTAAGGAGAACAACACATAT 57.338 29.630 0.00 0.00 0.00 1.78
693 738 9.093970 TCGTATTTAAGGAGAACAACACATATG 57.906 33.333 0.00 0.00 0.00 1.78
695 740 9.391006 GTATTTAAGGAGAACAACACATATGGA 57.609 33.333 7.80 0.00 0.00 3.41
696 741 8.877864 ATTTAAGGAGAACAACACATATGGAA 57.122 30.769 7.80 0.00 0.00 3.53
697 742 8.877864 TTTAAGGAGAACAACACATATGGAAT 57.122 30.769 7.80 0.00 0.00 3.01
698 743 6.764308 AAGGAGAACAACACATATGGAATG 57.236 37.500 7.80 5.13 0.00 2.67
699 744 4.641989 AGGAGAACAACACATATGGAATGC 59.358 41.667 7.80 0.00 0.00 3.56
700 745 4.202050 GGAGAACAACACATATGGAATGCC 60.202 45.833 7.80 0.00 0.00 4.40
716 761 6.484288 TGGAATGCCATAAATACATAGGAGG 58.516 40.000 0.00 0.00 39.92 4.30
717 762 6.045459 TGGAATGCCATAAATACATAGGAGGT 59.955 38.462 0.00 0.00 39.92 3.85
718 763 6.599638 GGAATGCCATAAATACATAGGAGGTC 59.400 42.308 0.00 0.00 0.00 3.85
719 764 5.147330 TGCCATAAATACATAGGAGGTCG 57.853 43.478 0.00 0.00 0.00 4.79
720 765 4.020573 TGCCATAAATACATAGGAGGTCGG 60.021 45.833 0.00 0.00 0.00 4.79
721 766 4.222145 GCCATAAATACATAGGAGGTCGGA 59.778 45.833 0.00 0.00 0.00 4.55
723 768 6.576442 GCCATAAATACATAGGAGGTCGGATT 60.576 42.308 0.00 0.00 0.00 3.01
725 770 7.334421 CCATAAATACATAGGAGGTCGGATTTG 59.666 40.741 0.00 0.00 0.00 2.32
726 771 2.622064 ACATAGGAGGTCGGATTTGC 57.378 50.000 0.00 0.00 0.00 3.68
728 773 2.238646 ACATAGGAGGTCGGATTTGCAA 59.761 45.455 0.00 0.00 0.00 4.08
729 774 3.278574 CATAGGAGGTCGGATTTGCAAA 58.721 45.455 15.44 15.44 0.00 3.68
730 775 1.826385 AGGAGGTCGGATTTGCAAAG 58.174 50.000 18.19 4.27 0.00 2.77
731 776 1.073923 AGGAGGTCGGATTTGCAAAGT 59.926 47.619 18.19 5.95 0.00 2.66
732 777 1.200020 GGAGGTCGGATTTGCAAAGTG 59.800 52.381 18.19 9.59 0.00 3.16
733 778 0.598065 AGGTCGGATTTGCAAAGTGC 59.402 50.000 18.19 9.20 45.29 4.40
744 789 0.322008 GCAAAGTGCAGTAGCCCTCT 60.322 55.000 7.48 0.00 44.26 3.69
748 793 0.610687 AGTGCAGTAGCCCTCTTGAC 59.389 55.000 0.00 0.00 41.13 3.18
756 801 3.450457 AGTAGCCCTCTTGACAATCTCTG 59.550 47.826 0.00 0.00 0.00 3.35
763 808 3.732212 TCTTGACAATCTCTGGTGTGTG 58.268 45.455 0.00 0.00 0.00 3.82
780 825 3.118454 GGTGTGGACGCATCACCG 61.118 66.667 0.00 0.00 41.37 4.94
789 834 2.709475 GCATCACCGCGAATGTCC 59.291 61.111 8.23 0.00 0.00 4.02
793 838 0.179100 ATCACCGCGAATGTCCTCTG 60.179 55.000 8.23 0.00 0.00 3.35
807 852 5.607939 TGTCCTCTGCTCCGATTAAATTA 57.392 39.130 0.00 0.00 0.00 1.40
810 855 7.054124 TGTCCTCTGCTCCGATTAAATTAAAT 58.946 34.615 0.00 0.00 0.00 1.40
812 857 8.496751 GTCCTCTGCTCCGATTAAATTAAATAC 58.503 37.037 0.00 0.00 0.00 1.89
818 863 9.168451 TGCTCCGATTAAATTAAATACACAAGA 57.832 29.630 0.00 0.00 0.00 3.02
819 864 9.434559 GCTCCGATTAAATTAAATACACAAGAC 57.565 33.333 0.00 0.00 0.00 3.01
825 870 8.632906 TTAAATTAAATACACAAGACGGGGAA 57.367 30.769 0.00 0.00 0.00 3.97
826 871 7.712204 AAATTAAATACACAAGACGGGGAAT 57.288 32.000 0.00 0.00 0.00 3.01
828 873 3.277142 AATACACAAGACGGGGAATCC 57.723 47.619 0.00 0.00 0.00 3.01
829 874 1.646912 TACACAAGACGGGGAATCCA 58.353 50.000 0.09 0.00 34.36 3.41
831 876 1.019278 CACAAGACGGGGAATCCACG 61.019 60.000 23.90 23.90 34.36 4.94
872 2694 4.779733 GACCCGCCCCCTCTCTCA 62.780 72.222 0.00 0.00 0.00 3.27
877 2699 4.459089 GCCCCCTCTCTCACGCAC 62.459 72.222 0.00 0.00 0.00 5.34
878 2700 4.135153 CCCCCTCTCTCACGCACG 62.135 72.222 0.00 0.00 0.00 5.34
909 2731 4.039357 CCGTGTCTCCTGTCGCGT 62.039 66.667 5.77 0.00 34.46 6.01
910 2732 2.801162 CGTGTCTCCTGTCGCGTG 60.801 66.667 5.77 0.00 32.39 5.34
911 2733 3.106407 GTGTCTCCTGTCGCGTGC 61.106 66.667 5.77 0.57 0.00 5.34
912 2734 3.295273 TGTCTCCTGTCGCGTGCT 61.295 61.111 5.77 0.00 0.00 4.40
913 2735 2.505118 GTCTCCTGTCGCGTGCTC 60.505 66.667 5.77 0.00 0.00 4.26
914 2736 3.749064 TCTCCTGTCGCGTGCTCC 61.749 66.667 5.77 0.00 0.00 4.70
915 2737 3.753434 CTCCTGTCGCGTGCTCCT 61.753 66.667 5.77 0.00 0.00 3.69
923 2752 2.347490 GCGTGCTCCTTCCTTCCA 59.653 61.111 0.00 0.00 0.00 3.53
928 2757 0.620556 TGCTCCTTCCTTCCATCCAC 59.379 55.000 0.00 0.00 0.00 4.02
988 2831 0.815213 ACACAAGAGCGAGCAAGCAA 60.815 50.000 6.21 0.00 40.15 3.91
989 2832 0.308684 CACAAGAGCGAGCAAGCAAA 59.691 50.000 6.21 0.00 40.15 3.68
990 2833 0.590195 ACAAGAGCGAGCAAGCAAAG 59.410 50.000 6.21 0.00 40.15 2.77
991 2834 0.728466 CAAGAGCGAGCAAGCAAAGC 60.728 55.000 6.21 0.00 40.15 3.51
992 2835 1.168407 AAGAGCGAGCAAGCAAAGCA 61.168 50.000 6.21 0.00 40.15 3.91
993 2836 1.154263 GAGCGAGCAAGCAAAGCAG 60.154 57.895 6.21 0.00 40.15 4.24
994 2837 2.126580 GCGAGCAAGCAAAGCAGG 60.127 61.111 0.00 0.00 37.05 4.85
995 2838 2.126580 CGAGCAAGCAAAGCAGGC 60.127 61.111 0.00 0.00 0.00 4.85
996 2839 2.911484 CGAGCAAGCAAAGCAGGCA 61.911 57.895 7.46 0.00 33.51 4.75
1008 2851 0.616964 AGCAGGCAGACATGAGAGGA 60.617 55.000 0.00 0.00 0.00 3.71
1010 2853 0.464870 CAGGCAGACATGAGAGGAGG 59.535 60.000 0.00 0.00 0.00 4.30
1011 2854 0.337773 AGGCAGACATGAGAGGAGGA 59.662 55.000 0.00 0.00 0.00 3.71
1012 2855 0.752054 GGCAGACATGAGAGGAGGAG 59.248 60.000 0.00 0.00 0.00 3.69
1013 2856 0.752054 GCAGACATGAGAGGAGGAGG 59.248 60.000 0.00 0.00 0.00 4.30
1014 2857 0.752054 CAGACATGAGAGGAGGAGGC 59.248 60.000 0.00 0.00 0.00 4.70
1015 2858 0.337773 AGACATGAGAGGAGGAGGCA 59.662 55.000 0.00 0.00 0.00 4.75
1016 2859 1.198713 GACATGAGAGGAGGAGGCAA 58.801 55.000 0.00 0.00 0.00 4.52
1017 2860 0.908198 ACATGAGAGGAGGAGGCAAC 59.092 55.000 0.00 0.00 0.00 4.17
1018 2861 0.179936 CATGAGAGGAGGAGGCAACC 59.820 60.000 0.00 0.00 37.17 3.77
1019 2862 0.043940 ATGAGAGGAGGAGGCAACCT 59.956 55.000 3.00 3.00 43.64 3.50
1211 3067 3.507597 TACGCACGCAGCACCTTCA 62.508 57.895 0.00 0.00 46.13 3.02
1259 3133 0.679960 TCGACCTAGCAGCAGCAGTA 60.680 55.000 3.17 0.00 45.49 2.74
1273 3147 1.582937 CAGTAGCGACCGTAGCACG 60.583 63.158 6.39 2.27 42.11 5.34
1282 3156 2.261671 CGTAGCACGGACCAAGCT 59.738 61.111 11.90 11.90 42.14 3.74
1283 3157 1.805945 CGTAGCACGGACCAAGCTC 60.806 63.158 10.68 3.57 39.68 4.09
1288 3162 4.681978 ACGGACCAAGCTCGCACC 62.682 66.667 0.00 0.00 0.00 5.01
1289 3163 4.379243 CGGACCAAGCTCGCACCT 62.379 66.667 0.00 0.00 0.00 4.00
1290 3164 2.435059 GGACCAAGCTCGCACCTC 60.435 66.667 0.00 0.00 0.00 3.85
1292 3166 1.739562 GACCAAGCTCGCACCTCTG 60.740 63.158 0.00 0.00 0.00 3.35
1293 3167 2.159819 GACCAAGCTCGCACCTCTGA 62.160 60.000 0.00 0.00 0.00 3.27
1295 3169 0.392193 CCAAGCTCGCACCTCTGATT 60.392 55.000 0.00 0.00 0.00 2.57
1296 3170 1.134699 CCAAGCTCGCACCTCTGATTA 60.135 52.381 0.00 0.00 0.00 1.75
1298 3172 0.461961 AGCTCGCACCTCTGATTACC 59.538 55.000 0.00 0.00 0.00 2.85
1299 3173 0.530870 GCTCGCACCTCTGATTACCC 60.531 60.000 0.00 0.00 0.00 3.69
1300 3174 0.105039 CTCGCACCTCTGATTACCCC 59.895 60.000 0.00 0.00 0.00 4.95
1301 3175 1.227263 CGCACCTCTGATTACCCCG 60.227 63.158 0.00 0.00 0.00 5.73
1313 3187 0.758734 TTACCCCGCTCCATGAGATG 59.241 55.000 0.00 0.00 0.00 2.90
1322 3196 3.327626 GCTCCATGAGATGCAGACATAG 58.672 50.000 0.00 0.00 36.35 2.23
1324 3198 4.308265 CTCCATGAGATGCAGACATAGTG 58.692 47.826 0.00 0.00 36.35 2.74
1333 3207 4.535526 TGCAGACATAGTGCAGTTCTAA 57.464 40.909 0.00 0.00 45.96 2.10
1350 3233 3.660865 TCTAAAAGTTCTTCAGACCGGC 58.339 45.455 0.00 0.00 0.00 6.13
1419 3302 4.990543 TCAGAAAACTGTAGCGAACATG 57.009 40.909 0.00 0.00 37.50 3.21
1420 3303 4.377021 TCAGAAAACTGTAGCGAACATGT 58.623 39.130 0.00 0.00 37.50 3.21
1421 3304 4.447724 TCAGAAAACTGTAGCGAACATGTC 59.552 41.667 0.00 0.00 37.50 3.06
1422 3305 3.746492 AGAAAACTGTAGCGAACATGTCC 59.254 43.478 0.00 0.00 37.50 4.02
1439 3323 2.029200 TGTCCGCGTATTTGGTTCACTA 60.029 45.455 4.92 0.00 0.00 2.74
1451 3336 3.361786 TGGTTCACTACTGATCCGATCA 58.638 45.455 10.67 10.67 38.64 2.92
1460 3345 6.758416 CACTACTGATCCGATCATTGAGAAAA 59.242 38.462 11.53 0.00 38.85 2.29
1468 3353 2.559698 TCATTGAGAAAACTCCGCCA 57.440 45.000 0.00 0.00 0.00 5.69
1477 3362 3.253432 AGAAAACTCCGCCAGTGAATTTC 59.747 43.478 0.00 0.00 34.56 2.17
1493 3378 2.656947 TTTCACCCTGAAACTCCCAG 57.343 50.000 0.00 0.00 41.02 4.45
1504 3389 5.412904 CCTGAAACTCCCAGAATAACTCAAC 59.587 44.000 0.00 0.00 33.65 3.18
1542 3430 2.125350 GGCTGAGCTCAACCCTCG 60.125 66.667 23.31 9.30 31.98 4.63
1550 3441 2.032528 TCAACCCTCGCAAGCTGG 59.967 61.111 0.00 0.00 37.18 4.85
1569 3460 2.583593 GCCGGAGCTAGCGTTCAG 60.584 66.667 5.05 3.05 35.50 3.02
1594 3596 1.153249 CGCTTTCATTCCCGCCCTA 60.153 57.895 0.00 0.00 0.00 3.53
1595 3597 1.436983 CGCTTTCATTCCCGCCCTAC 61.437 60.000 0.00 0.00 0.00 3.18
1602 3650 2.265467 ATTCCCGCCCTACGCACATT 62.265 55.000 0.00 0.00 41.76 2.71
1610 3658 1.225827 CTACGCACATTGCACGCTG 60.226 57.895 0.00 0.00 45.36 5.18
1645 3698 2.099652 TTGTCAGCGTCCTGGTCCTG 62.100 60.000 0.00 0.00 39.61 3.86
1646 3699 2.997315 TCAGCGTCCTGGTCCTGG 60.997 66.667 8.53 8.53 39.61 4.45
1647 3700 4.087892 CAGCGTCCTGGTCCTGGG 62.088 72.222 14.48 5.15 35.38 4.45
1655 3708 4.542627 TGGTCCTGGGGTGGGGTT 62.543 66.667 0.00 0.00 0.00 4.11
1669 3722 2.049156 GGTTCTTGCTTTGCCGGC 60.049 61.111 22.73 22.73 0.00 6.13
1941 4087 1.736696 GCCGCCAAATCAAACTGATGG 60.737 52.381 0.00 0.00 37.15 3.51
1942 4088 1.545582 CCGCCAAATCAAACTGATGGT 59.454 47.619 0.00 0.00 37.15 3.55
1943 4089 2.752354 CCGCCAAATCAAACTGATGGTA 59.248 45.455 0.00 0.00 37.15 3.25
1950 4096 7.282224 GCCAAATCAAACTGATGGTAGTACATA 59.718 37.037 2.06 0.00 37.15 2.29
1973 4119 1.154599 GGAATATGCGCGCGTGATG 60.155 57.895 34.70 2.67 0.00 3.07
1974 4120 1.564622 GAATATGCGCGCGTGATGT 59.435 52.632 34.70 18.41 0.00 3.06
2001 4147 1.931172 GTATGATTCCCGTTGACCGTG 59.069 52.381 0.00 0.00 33.66 4.94
2189 4805 7.854557 TTTCAAGTACGTATGAGCTACTCTA 57.145 36.000 0.00 0.00 0.00 2.43
2235 4851 3.988379 TGTCCAGATTTTCAACTGTGC 57.012 42.857 0.00 0.00 32.93 4.57
2251 4870 1.677633 TGCTCCGACCGAGTGATGA 60.678 57.895 0.00 0.00 41.10 2.92
2258 4877 1.079503 GACCGAGTGATGAACCAAGC 58.920 55.000 0.00 0.00 0.00 4.01
2261 4880 1.796796 GAGTGATGAACCAAGCGGC 59.203 57.895 0.00 0.00 34.57 6.53
2367 4996 0.812412 GCTCGGCGCCAATAAAGGTA 60.812 55.000 28.98 0.00 0.00 3.08
2370 4999 1.755959 TCGGCGCCAATAAAGGTACTA 59.244 47.619 28.98 0.00 38.49 1.82
2372 5001 1.862827 GGCGCCAATAAAGGTACTACG 59.137 52.381 24.80 0.00 38.49 3.51
2373 5002 2.543641 GCGCCAATAAAGGTACTACGT 58.456 47.619 0.00 0.00 38.49 3.57
2374 5003 2.283351 GCGCCAATAAAGGTACTACGTG 59.717 50.000 0.00 0.00 38.49 4.49
2375 5004 3.772932 CGCCAATAAAGGTACTACGTGA 58.227 45.455 0.00 0.00 38.49 4.35
2376 5005 3.549070 CGCCAATAAAGGTACTACGTGAC 59.451 47.826 0.00 0.00 38.49 3.67
2377 5006 4.497300 GCCAATAAAGGTACTACGTGACA 58.503 43.478 0.00 0.00 38.49 3.58
2378 5007 4.328169 GCCAATAAAGGTACTACGTGACAC 59.672 45.833 0.00 0.00 38.49 3.67
2503 5213 7.925703 CGAATTACTCGTCAGGTTATAACAT 57.074 36.000 17.16 7.49 42.89 2.71
2591 5301 1.084370 CCGGCGGACTCTCAAATGTC 61.084 60.000 24.41 0.00 0.00 3.06
2595 5305 1.996191 GCGGACTCTCAAATGTCAGTC 59.004 52.381 0.00 6.16 35.11 3.51
2600 5310 5.564848 CGGACTCTCAAATGTCAGTCACTAA 60.565 44.000 13.03 0.00 37.59 2.24
2623 5338 5.234752 ACAACACATCACGTCTTGCTATTA 58.765 37.500 0.00 0.00 27.21 0.98
2634 5349 7.438160 TCACGTCTTGCTATTATATCCACTTTG 59.562 37.037 0.00 0.00 0.00 2.77
2828 5549 6.036735 CGATTGTTGGTTCCGTTTATATCTGT 59.963 38.462 0.00 0.00 0.00 3.41
2835 5556 6.148150 TGGTTCCGTTTATATCTGTTGTTGAC 59.852 38.462 0.00 0.00 0.00 3.18
2845 5566 2.093921 TCTGTTGTTGACGGTTCACTGA 60.094 45.455 0.00 0.00 36.00 3.41
2863 5588 1.826487 AAACGGCGGGTTTCTGCTT 60.826 52.632 13.24 0.00 45.60 3.91
3011 5736 2.094442 GTGAGAGCCTCTGTGGTAAGAC 60.094 54.545 0.00 0.00 38.35 3.01
3019 5744 4.850680 CCTCTGTGGTAAGACTAGACTCT 58.149 47.826 0.00 0.00 0.00 3.24
3093 5822 3.070446 TGAACTGGTTCCGTTCAGTATGT 59.930 43.478 17.85 0.00 44.03 2.29
3095 5824 5.046878 TGAACTGGTTCCGTTCAGTATGTAT 60.047 40.000 17.85 0.00 44.03 2.29
3096 5825 4.755411 ACTGGTTCCGTTCAGTATGTATG 58.245 43.478 0.00 0.00 41.81 2.39
3125 5864 1.555075 TGAGGCCATGACAAGTACTCC 59.445 52.381 5.01 0.00 0.00 3.85
3126 5865 0.912486 AGGCCATGACAAGTACTCCC 59.088 55.000 5.01 0.00 0.00 4.30
3127 5866 0.912486 GGCCATGACAAGTACTCCCT 59.088 55.000 0.00 0.00 0.00 4.20
3128 5867 1.134371 GGCCATGACAAGTACTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
3129 5868 1.134371 GCCATGACAAGTACTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
3130 5869 1.137086 CCATGACAAGTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
3131 5870 1.825474 CATGACAAGTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
3132 5871 2.005370 TGACAAGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3133 5872 1.891150 TGACAAGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
3134 5873 1.204231 GACAAGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
3135 5874 1.203149 ACAAGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
3136 5875 2.042162 ACAAGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
3137 5876 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3138 5877 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3139 5878 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3140 5879 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3141 5880 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3142 5881 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3143 5882 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3144 5883 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3145 5884 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3146 5885 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3147 5886 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3148 5887 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3149 5888 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3150 5889 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3187 5926 9.990360 TTATGGACTATATACGAAGCAAAATGA 57.010 29.630 0.00 0.00 0.00 2.57
3188 5927 7.946655 TGGACTATATACGAAGCAAAATGAG 57.053 36.000 0.00 0.00 0.00 2.90
3189 5928 7.497595 TGGACTATATACGAAGCAAAATGAGT 58.502 34.615 0.00 0.00 0.00 3.41
3190 5929 7.438160 TGGACTATATACGAAGCAAAATGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
3191 5930 7.652105 GGACTATATACGAAGCAAAATGAGTGA 59.348 37.037 0.00 0.00 0.00 3.41
3192 5931 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
3193 5932 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
3195 5934 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
3196 5935 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
3197 5936 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
3198 5937 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
3199 5938 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
3242 5981 9.747898 ATACATCCCTTTGTACTTTGTATTGAA 57.252 29.630 0.00 0.00 35.04 2.69
3243 5982 8.472007 ACATCCCTTTGTACTTTGTATTGAAA 57.528 30.769 0.00 0.00 0.00 2.69
3244 5983 9.088987 ACATCCCTTTGTACTTTGTATTGAAAT 57.911 29.630 0.00 0.00 0.00 2.17
3260 5999 8.250332 TGTATTGAAATATCCAAAAAGACAGGC 58.750 33.333 0.00 0.00 0.00 4.85
3261 6000 5.659440 TGAAATATCCAAAAAGACAGGCC 57.341 39.130 0.00 0.00 0.00 5.19
3262 6001 5.332743 TGAAATATCCAAAAAGACAGGCCT 58.667 37.500 0.00 0.00 0.00 5.19
3263 6002 5.779771 TGAAATATCCAAAAAGACAGGCCTT 59.220 36.000 0.00 0.00 0.00 4.35
3264 6003 5.921962 AATATCCAAAAAGACAGGCCTTC 57.078 39.130 0.00 4.48 0.00 3.46
3265 6004 3.532641 ATCCAAAAAGACAGGCCTTCT 57.467 42.857 0.00 7.12 0.00 2.85
3266 6005 3.312736 TCCAAAAAGACAGGCCTTCTT 57.687 42.857 18.80 18.80 34.66 2.52
3267 6006 3.642141 TCCAAAAAGACAGGCCTTCTTT 58.358 40.909 25.08 25.08 43.67 2.52
3268 6007 3.384467 TCCAAAAAGACAGGCCTTCTTTG 59.616 43.478 28.42 21.77 41.48 2.77
3269 6008 3.493176 CCAAAAAGACAGGCCTTCTTTGG 60.493 47.826 28.42 24.75 41.48 3.28
3270 6009 2.755952 AAAGACAGGCCTTCTTTGGT 57.244 45.000 27.74 14.47 40.93 3.67
3271 6010 2.755952 AAGACAGGCCTTCTTTGGTT 57.244 45.000 18.80 3.43 28.36 3.67
3272 6011 2.755952 AGACAGGCCTTCTTTGGTTT 57.244 45.000 0.00 0.00 0.00 3.27
3273 6012 3.876309 AGACAGGCCTTCTTTGGTTTA 57.124 42.857 0.00 0.00 0.00 2.01
3274 6013 4.388577 AGACAGGCCTTCTTTGGTTTAT 57.611 40.909 0.00 0.00 0.00 1.40
3275 6014 5.514500 AGACAGGCCTTCTTTGGTTTATA 57.486 39.130 0.00 0.00 0.00 0.98
3276 6015 5.501156 AGACAGGCCTTCTTTGGTTTATAG 58.499 41.667 0.00 0.00 0.00 1.31
3277 6016 4.600062 ACAGGCCTTCTTTGGTTTATAGG 58.400 43.478 0.00 0.00 0.00 2.57
3278 6017 3.954258 CAGGCCTTCTTTGGTTTATAGGG 59.046 47.826 0.00 0.00 0.00 3.53
3279 6018 3.596500 AGGCCTTCTTTGGTTTATAGGGT 59.403 43.478 0.00 0.00 0.00 4.34
3280 6019 4.791880 AGGCCTTCTTTGGTTTATAGGGTA 59.208 41.667 0.00 0.00 0.00 3.69
3281 6020 5.104067 AGGCCTTCTTTGGTTTATAGGGTAG 60.104 44.000 0.00 0.00 0.00 3.18
3282 6021 5.131067 GCCTTCTTTGGTTTATAGGGTAGG 58.869 45.833 0.00 0.00 0.00 3.18
3283 6022 5.691896 CCTTCTTTGGTTTATAGGGTAGGG 58.308 45.833 0.00 0.00 0.00 3.53
3284 6023 5.430745 CCTTCTTTGGTTTATAGGGTAGGGA 59.569 44.000 0.00 0.00 0.00 4.20
3285 6024 6.069264 CCTTCTTTGGTTTATAGGGTAGGGAA 60.069 42.308 0.00 0.00 0.00 3.97
3286 6025 6.973700 TCTTTGGTTTATAGGGTAGGGAAA 57.026 37.500 0.00 0.00 0.00 3.13
3287 6026 7.533923 TCTTTGGTTTATAGGGTAGGGAAAT 57.466 36.000 0.00 0.00 0.00 2.17
3288 6027 7.580007 TCTTTGGTTTATAGGGTAGGGAAATC 58.420 38.462 0.00 0.00 0.00 2.17
3289 6028 6.911993 TTGGTTTATAGGGTAGGGAAATCA 57.088 37.500 0.00 0.00 0.00 2.57
3290 6029 7.474474 TTGGTTTATAGGGTAGGGAAATCAT 57.526 36.000 0.00 0.00 0.00 2.45
3291 6030 8.584326 TTGGTTTATAGGGTAGGGAAATCATA 57.416 34.615 0.00 0.00 0.00 2.15
3292 6031 8.214721 TGGTTTATAGGGTAGGGAAATCATAG 57.785 38.462 0.00 0.00 0.00 2.23
3293 6032 7.238933 TGGTTTATAGGGTAGGGAAATCATAGG 59.761 40.741 0.00 0.00 0.00 2.57
3294 6033 7.460082 GGTTTATAGGGTAGGGAAATCATAGGA 59.540 40.741 0.00 0.00 0.00 2.94
3295 6034 8.887393 GTTTATAGGGTAGGGAAATCATAGGAA 58.113 37.037 0.00 0.00 0.00 3.36
3296 6035 9.643778 TTTATAGGGTAGGGAAATCATAGGAAT 57.356 33.333 0.00 0.00 0.00 3.01
3298 6037 8.862091 ATAGGGTAGGGAAATCATAGGAATAG 57.138 38.462 0.00 0.00 0.00 1.73
3299 6038 6.032693 AGGGTAGGGAAATCATAGGAATAGG 58.967 44.000 0.00 0.00 0.00 2.57
3300 6039 6.030082 GGGTAGGGAAATCATAGGAATAGGA 58.970 44.000 0.00 0.00 0.00 2.94
3301 6040 6.504279 GGGTAGGGAAATCATAGGAATAGGAA 59.496 42.308 0.00 0.00 0.00 3.36
3302 6041 7.018249 GGGTAGGGAAATCATAGGAATAGGAAA 59.982 40.741 0.00 0.00 0.00 3.13
3303 6042 8.103935 GGTAGGGAAATCATAGGAATAGGAAAG 58.896 40.741 0.00 0.00 0.00 2.62
3304 6043 7.713704 AGGGAAATCATAGGAATAGGAAAGT 57.286 36.000 0.00 0.00 0.00 2.66
3305 6044 7.750655 AGGGAAATCATAGGAATAGGAAAGTC 58.249 38.462 0.00 0.00 0.00 3.01
3306 6045 7.350921 AGGGAAATCATAGGAATAGGAAAGTCA 59.649 37.037 0.00 0.00 0.00 3.41
3307 6046 8.166726 GGGAAATCATAGGAATAGGAAAGTCAT 58.833 37.037 0.00 0.00 0.00 3.06
3311 6050 9.621239 AATCATAGGAATAGGAAAGTCATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
3312 6051 9.621239 ATCATAGGAATAGGAAAGTCATAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3313 6052 9.447279 TCATAGGAATAGGAAAGTCATAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
3316 6055 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
3317 6056 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
3318 6057 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3320 6059 9.790344 AATAGGAAAGTCATAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3321 6060 7.443302 AGGAAAGTCATAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
3322 6061 7.507829 AGGAAAGTCATAGGAAATGAGATGAG 58.492 38.462 0.00 0.00 0.00 2.90
3323 6062 7.346698 AGGAAAGTCATAGGAAATGAGATGAGA 59.653 37.037 0.00 0.00 0.00 3.27
3324 6063 8.156165 GGAAAGTCATAGGAAATGAGATGAGAT 58.844 37.037 0.00 0.00 0.00 2.75
3325 6064 8.905660 AAAGTCATAGGAAATGAGATGAGATG 57.094 34.615 0.00 0.00 0.00 2.90
3326 6065 6.465948 AGTCATAGGAAATGAGATGAGATGC 58.534 40.000 0.00 0.00 0.00 3.91
3327 6066 6.042897 AGTCATAGGAAATGAGATGAGATGCA 59.957 38.462 0.00 0.00 0.00 3.96
3328 6067 6.879993 GTCATAGGAAATGAGATGAGATGCAT 59.120 38.462 0.00 0.00 40.77 3.96
3344 6083 6.436738 AGATGCATCTCAAATCCTATGAGT 57.563 37.500 23.75 0.00 43.77 3.41
3345 6084 7.550597 AGATGCATCTCAAATCCTATGAGTA 57.449 36.000 23.75 0.00 43.77 2.59
3346 6085 7.613585 AGATGCATCTCAAATCCTATGAGTAG 58.386 38.462 23.75 0.11 43.77 2.57
3347 6086 7.310547 AGATGCATCTCAAATCCTATGAGTAGG 60.311 40.741 23.75 0.00 43.77 3.18
3364 6103 6.821388 TGAGTAGGAATAGGAAAGAAGATGC 58.179 40.000 0.00 0.00 0.00 3.91
3365 6104 6.181206 AGTAGGAATAGGAAAGAAGATGCC 57.819 41.667 0.00 0.00 0.00 4.40
3366 6105 4.445557 AGGAATAGGAAAGAAGATGCCC 57.554 45.455 0.00 0.00 0.00 5.36
3367 6106 4.050757 AGGAATAGGAAAGAAGATGCCCT 58.949 43.478 0.00 0.00 0.00 5.19
3368 6107 4.480166 AGGAATAGGAAAGAAGATGCCCTT 59.520 41.667 0.00 0.00 37.93 3.95
3369 6108 5.043806 AGGAATAGGAAAGAAGATGCCCTTT 60.044 40.000 0.00 0.00 34.68 3.11
3370 6109 5.068329 GGAATAGGAAAGAAGATGCCCTTTG 59.932 44.000 0.00 0.00 34.68 2.77
3371 6110 3.814504 AGGAAAGAAGATGCCCTTTGA 57.185 42.857 0.00 0.00 34.68 2.69
3372 6111 4.328118 AGGAAAGAAGATGCCCTTTGAT 57.672 40.909 0.00 0.00 34.68 2.57
3373 6112 4.681484 AGGAAAGAAGATGCCCTTTGATT 58.319 39.130 0.00 0.00 34.68 2.57
3374 6113 4.708909 AGGAAAGAAGATGCCCTTTGATTC 59.291 41.667 0.00 0.00 34.68 2.52
3375 6114 4.463891 GGAAAGAAGATGCCCTTTGATTCA 59.536 41.667 0.00 0.00 34.68 2.57
3376 6115 5.397142 AAAGAAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.68 3.18
3377 6116 4.313020 AGAAGATGCCCTTTGATTCACT 57.687 40.909 0.00 0.00 34.68 3.41
3378 6117 4.670765 AGAAGATGCCCTTTGATTCACTT 58.329 39.130 0.00 0.00 34.68 3.16
3379 6118 4.704057 AGAAGATGCCCTTTGATTCACTTC 59.296 41.667 0.00 0.00 34.68 3.01
3380 6119 4.038271 AGATGCCCTTTGATTCACTTCA 57.962 40.909 0.00 0.00 0.00 3.02
3381 6120 4.607239 AGATGCCCTTTGATTCACTTCAT 58.393 39.130 0.00 0.00 0.00 2.57
3382 6121 5.759059 AGATGCCCTTTGATTCACTTCATA 58.241 37.500 0.00 0.00 0.00 2.15
3383 6122 5.826737 AGATGCCCTTTGATTCACTTCATAG 59.173 40.000 0.00 0.00 0.00 2.23
3384 6123 4.272489 TGCCCTTTGATTCACTTCATAGG 58.728 43.478 4.53 4.53 41.72 2.57
3385 6124 4.263905 TGCCCTTTGATTCACTTCATAGGT 60.264 41.667 9.20 0.00 40.96 3.08
3386 6125 4.706962 GCCCTTTGATTCACTTCATAGGTT 59.293 41.667 9.20 0.00 40.96 3.50
3387 6126 5.185828 GCCCTTTGATTCACTTCATAGGTTT 59.814 40.000 9.20 0.00 40.96 3.27
3388 6127 6.295292 GCCCTTTGATTCACTTCATAGGTTTT 60.295 38.462 9.20 0.00 40.96 2.43
3389 6128 7.670364 CCCTTTGATTCACTTCATAGGTTTTT 58.330 34.615 9.20 0.00 40.96 1.94
3411 6150 7.630242 TTTTTCCATTGAGTCTAGCCTAATG 57.370 36.000 0.00 0.00 0.00 1.90
3412 6151 5.957771 TTCCATTGAGTCTAGCCTAATGT 57.042 39.130 0.00 0.00 0.00 2.71
3413 6152 5.957771 TCCATTGAGTCTAGCCTAATGTT 57.042 39.130 0.00 0.00 0.00 2.71
3414 6153 6.313519 TCCATTGAGTCTAGCCTAATGTTT 57.686 37.500 0.00 0.00 0.00 2.83
3415 6154 7.432148 TCCATTGAGTCTAGCCTAATGTTTA 57.568 36.000 0.00 0.00 0.00 2.01
3416 6155 8.034313 TCCATTGAGTCTAGCCTAATGTTTAT 57.966 34.615 0.00 0.00 0.00 1.40
3417 6156 8.494433 TCCATTGAGTCTAGCCTAATGTTTATT 58.506 33.333 0.00 0.00 0.00 1.40
3418 6157 9.125026 CCATTGAGTCTAGCCTAATGTTTATTT 57.875 33.333 0.00 0.00 0.00 1.40
3421 6160 8.732746 TGAGTCTAGCCTAATGTTTATTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
3422 6161 8.548877 TGAGTCTAGCCTAATGTTTATTTTCCT 58.451 33.333 0.00 0.00 0.00 3.36
3436 6175 8.748412 TGTTTATTTTCCTATGAAATGTGGAGG 58.252 33.333 0.00 0.00 40.08 4.30
3437 6176 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
3438 6177 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
3440 6179 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
3441 6180 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3442 6181 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3443 6182 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3444 6183 6.270927 TCCTATGAAATGTGGAGGATAGGAAG 59.729 42.308 0.00 0.00 38.86 3.46
3445 6184 6.270927 CCTATGAAATGTGGAGGATAGGAAGA 59.729 42.308 0.00 0.00 36.16 2.87
3446 6185 6.581388 ATGAAATGTGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
3447 6186 6.581388 TGAAATGTGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
3448 6187 6.973642 TGAAATGTGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
3449 6188 7.056635 TGAAATGTGGAGGATAGGAAGAATTC 58.943 38.462 0.00 0.00 46.67 2.17
3565 6311 8.417176 CGTAATCTTTTTGCAAATAACACTGAC 58.583 33.333 13.65 4.45 0.00 3.51
3608 6354 6.489603 TGAGTATGTTTATGACAAATGGGGT 58.510 36.000 0.00 0.00 42.62 4.95
3609 6355 6.951198 TGAGTATGTTTATGACAAATGGGGTT 59.049 34.615 0.00 0.00 42.62 4.11
3648 6394 1.897398 GCACCGCTTAACACCTCACG 61.897 60.000 0.00 0.00 0.00 4.35
3650 6396 0.105408 ACCGCTTAACACCTCACGTT 59.895 50.000 0.00 0.00 0.00 3.99
3651 6397 1.340889 ACCGCTTAACACCTCACGTTA 59.659 47.619 0.00 0.00 0.00 3.18
4057 6826 3.451894 TCGATGGCAGCTCGAGCA 61.452 61.111 36.87 18.69 45.16 4.26
4192 6963 3.197790 CTGTTGCCGCATCGAGGG 61.198 66.667 0.00 0.00 0.00 4.30
4200 6971 3.797353 GCATCGAGGGGGAGGCAA 61.797 66.667 0.00 0.00 42.86 4.52
4208 7247 4.035102 GGGGAGGCAAAGGACGCT 62.035 66.667 0.00 0.00 0.00 5.07
4354 7406 2.015587 ACGAATCCGAGGTACAGAGAC 58.984 52.381 0.00 0.00 39.50 3.36
4361 7413 2.682494 GGTACAGAGACGGGGGCA 60.682 66.667 0.00 0.00 0.00 5.36
4391 7443 4.816109 CCAGATCTGGGTGAGGGA 57.184 61.111 31.14 0.00 46.81 4.20
4570 7626 2.880443 AGAAATTGGTGCCACATCAGT 58.120 42.857 0.00 0.00 0.00 3.41
4581 7637 1.745653 CCACATCAGTCTGACTAGCGA 59.254 52.381 10.47 4.39 0.00 4.93
4743 7802 4.744631 GGTGGTTTTGTGCAATTTACTCAG 59.255 41.667 0.00 0.00 0.00 3.35
4744 7803 5.451242 GGTGGTTTTGTGCAATTTACTCAGA 60.451 40.000 0.00 0.00 0.00 3.27
4745 7804 6.039616 GTGGTTTTGTGCAATTTACTCAGAA 58.960 36.000 0.00 0.00 0.00 3.02
4746 7805 6.701400 GTGGTTTTGTGCAATTTACTCAGAAT 59.299 34.615 0.00 0.00 0.00 2.40
4747 7806 7.224557 GTGGTTTTGTGCAATTTACTCAGAATT 59.775 33.333 0.00 0.00 0.00 2.17
4748 7807 7.437862 TGGTTTTGTGCAATTTACTCAGAATTC 59.562 33.333 0.00 0.00 0.00 2.17
4749 7808 7.095649 GGTTTTGTGCAATTTACTCAGAATTCC 60.096 37.037 0.65 0.00 0.00 3.01
4750 7809 6.899393 TTGTGCAATTTACTCAGAATTCCT 57.101 33.333 0.65 0.00 0.00 3.36
4751 7810 6.500684 TGTGCAATTTACTCAGAATTCCTC 57.499 37.500 0.65 0.00 0.00 3.71
4752 7811 5.415701 TGTGCAATTTACTCAGAATTCCTCC 59.584 40.000 0.65 0.00 0.00 4.30
4753 7812 5.415701 GTGCAATTTACTCAGAATTCCTCCA 59.584 40.000 0.65 0.00 0.00 3.86
4754 7813 6.096001 GTGCAATTTACTCAGAATTCCTCCAT 59.904 38.462 0.65 0.00 0.00 3.41
4755 7814 7.283127 GTGCAATTTACTCAGAATTCCTCCATA 59.717 37.037 0.65 0.00 0.00 2.74
4756 7815 7.500227 TGCAATTTACTCAGAATTCCTCCATAG 59.500 37.037 0.65 0.00 0.00 2.23
4757 7816 7.716998 GCAATTTACTCAGAATTCCTCCATAGA 59.283 37.037 0.65 0.00 0.00 1.98
4758 7817 9.618890 CAATTTACTCAGAATTCCTCCATAGAA 57.381 33.333 0.65 0.00 0.00 2.10
4764 7823 9.163894 ACTCAGAATTCCTCCATAGAAATATGA 57.836 33.333 0.65 0.00 0.00 2.15
4773 7832 9.745018 TCCTCCATAGAAATATGATTTCATTCC 57.255 33.333 13.01 0.00 37.76 3.01
4774 7833 9.750783 CCTCCATAGAAATATGATTTCATTCCT 57.249 33.333 13.01 0.00 37.76 3.36
4787 7846 9.880157 ATGATTTCATTCCTACAAATCAAAAGG 57.120 29.630 9.66 0.00 45.21 3.11
4788 7847 7.818930 TGATTTCATTCCTACAAATCAAAAGGC 59.181 33.333 4.26 0.00 41.41 4.35
4789 7848 6.916360 TTCATTCCTACAAATCAAAAGGCT 57.084 33.333 0.00 0.00 0.00 4.58
4790 7849 6.515272 TCATTCCTACAAATCAAAAGGCTC 57.485 37.500 0.00 0.00 0.00 4.70
4791 7850 6.248433 TCATTCCTACAAATCAAAAGGCTCT 58.752 36.000 0.00 0.00 0.00 4.09
4792 7851 7.402054 TCATTCCTACAAATCAAAAGGCTCTA 58.598 34.615 0.00 0.00 0.00 2.43
4793 7852 7.888021 TCATTCCTACAAATCAAAAGGCTCTAA 59.112 33.333 0.00 0.00 0.00 2.10
4794 7853 8.522830 CATTCCTACAAATCAAAAGGCTCTAAA 58.477 33.333 0.00 0.00 0.00 1.85
4795 7854 7.687941 TCCTACAAATCAAAAGGCTCTAAAG 57.312 36.000 0.00 0.00 0.00 1.85
4796 7855 7.458397 TCCTACAAATCAAAAGGCTCTAAAGA 58.542 34.615 0.00 0.00 0.00 2.52
4797 7856 7.942341 TCCTACAAATCAAAAGGCTCTAAAGAA 59.058 33.333 0.00 0.00 0.00 2.52
4798 7857 8.576442 CCTACAAATCAAAAGGCTCTAAAGAAA 58.424 33.333 0.00 0.00 0.00 2.52
4801 7860 9.836864 ACAAATCAAAAGGCTCTAAAGAAATTT 57.163 25.926 0.00 0.00 0.00 1.82
4805 7864 8.887036 TCAAAAGGCTCTAAAGAAATTTTTCC 57.113 30.769 0.00 0.00 37.92 3.13
4806 7865 8.704668 TCAAAAGGCTCTAAAGAAATTTTTCCT 58.295 29.630 0.00 0.00 37.92 3.36
4807 7866 9.981114 CAAAAGGCTCTAAAGAAATTTTTCCTA 57.019 29.630 0.00 0.00 37.92 2.94
4808 7867 9.982651 AAAAGGCTCTAAAGAAATTTTTCCTAC 57.017 29.630 0.00 0.00 37.92 3.18
4809 7868 8.706322 AAGGCTCTAAAGAAATTTTTCCTACA 57.294 30.769 0.00 0.00 37.92 2.74
4810 7869 8.706322 AGGCTCTAAAGAAATTTTTCCTACAA 57.294 30.769 0.00 0.00 37.92 2.41
4811 7870 9.143155 AGGCTCTAAAGAAATTTTTCCTACAAA 57.857 29.630 0.00 0.00 37.92 2.83
4812 7871 9.758651 GGCTCTAAAGAAATTTTTCCTACAAAA 57.241 29.630 0.00 0.00 37.92 2.44
4844 7903 9.942526 ATCCTATGGAATTTCTACAAAAATCCT 57.057 29.630 6.27 0.00 34.34 3.24
4845 7904 9.768215 TCCTATGGAATTTCTACAAAAATCCTT 57.232 29.630 6.27 3.30 34.68 3.36
4860 7919 8.615211 ACAAAAATCCTTCAAATCAAAGAAAGC 58.385 29.630 0.00 0.00 0.00 3.51
4861 7920 7.734924 AAAATCCTTCAAATCAAAGAAAGCC 57.265 32.000 0.00 0.00 0.00 4.35
4862 7921 6.676990 AATCCTTCAAATCAAAGAAAGCCT 57.323 33.333 0.00 0.00 0.00 4.58
4863 7922 6.676990 ATCCTTCAAATCAAAGAAAGCCTT 57.323 33.333 0.00 0.00 36.47 4.35
4864 7923 7.781324 ATCCTTCAAATCAAAGAAAGCCTTA 57.219 32.000 0.00 0.00 34.00 2.69
4865 7924 7.781324 TCCTTCAAATCAAAGAAAGCCTTAT 57.219 32.000 0.00 0.00 34.00 1.73
4866 7925 8.877864 TCCTTCAAATCAAAGAAAGCCTTATA 57.122 30.769 0.00 0.00 34.00 0.98
4867 7926 9.479549 TCCTTCAAATCAAAGAAAGCCTTATAT 57.520 29.630 0.00 0.00 34.00 0.86
4876 7935 8.889717 TCAAAGAAAGCCTTATATTTAGGAACG 58.110 33.333 7.56 0.00 34.56 3.95
4877 7936 7.803279 AAGAAAGCCTTATATTTAGGAACGG 57.197 36.000 7.56 0.00 34.56 4.44
4878 7937 7.133133 AGAAAGCCTTATATTTAGGAACGGA 57.867 36.000 7.56 0.00 34.56 4.69
4879 7938 7.217906 AGAAAGCCTTATATTTAGGAACGGAG 58.782 38.462 7.56 0.00 34.56 4.63
4880 7939 5.485209 AGCCTTATATTTAGGAACGGAGG 57.515 43.478 7.56 0.00 34.56 4.30
4881 7940 4.286291 AGCCTTATATTTAGGAACGGAGGG 59.714 45.833 7.56 0.00 34.56 4.30
4882 7941 4.285260 GCCTTATATTTAGGAACGGAGGGA 59.715 45.833 7.56 0.00 34.56 4.20
4883 7942 5.569026 GCCTTATATTTAGGAACGGAGGGAG 60.569 48.000 7.56 0.00 34.56 4.30
4884 7943 5.543020 CCTTATATTTAGGAACGGAGGGAGT 59.457 44.000 0.00 0.00 34.56 3.85
4885 7944 6.723052 CCTTATATTTAGGAACGGAGGGAGTA 59.277 42.308 0.00 0.00 34.56 2.59
4886 7945 7.309683 CCTTATATTTAGGAACGGAGGGAGTAC 60.310 44.444 0.00 0.00 34.56 2.73
4887 7946 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4888 7947 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
4889 7948 2.433662 AGGAACGGAGGGAGTACTAC 57.566 55.000 0.00 0.00 0.00 2.73
4903 7962 2.092968 AGTACTACCATGGGTGCATGTG 60.093 50.000 18.09 0.00 36.19 3.21
4908 7967 0.967662 CCATGGGTGCATGTGTTTGA 59.032 50.000 2.85 0.00 0.00 2.69
4916 7975 3.040099 GTGCATGTGTTTGACGTTTACC 58.960 45.455 0.00 0.00 0.00 2.85
4923 7982 4.445052 TGTGTTTGACGTTTACCTGTATCG 59.555 41.667 0.00 0.00 0.00 2.92
4926 7985 5.574055 TGTTTGACGTTTACCTGTATCGATC 59.426 40.000 0.00 0.00 0.00 3.69
4941 8000 3.694043 TCGATCACCATGGTTCTGAAA 57.306 42.857 16.84 0.00 0.00 2.69
4942 8001 4.220693 TCGATCACCATGGTTCTGAAAT 57.779 40.909 16.84 1.99 0.00 2.17
4943 8002 3.940852 TCGATCACCATGGTTCTGAAATG 59.059 43.478 16.84 0.85 0.00 2.32
4947 8006 5.199024 TCACCATGGTTCTGAAATGTTTG 57.801 39.130 16.84 0.00 0.00 2.93
4949 8008 5.830457 TCACCATGGTTCTGAAATGTTTGTA 59.170 36.000 16.84 0.00 0.00 2.41
4950 8009 5.920273 CACCATGGTTCTGAAATGTTTGTAC 59.080 40.000 16.84 0.00 0.00 2.90
4957 8181 4.906618 TCTGAAATGTTTGTACCTCCCTC 58.093 43.478 0.00 0.00 0.00 4.30
4962 8187 5.678955 AATGTTTGTACCTCCCTCTACTC 57.321 43.478 0.00 0.00 0.00 2.59
5072 8297 7.164803 CAGAGAAAGAGTAAATTCCAGTCCTT 58.835 38.462 0.00 0.00 0.00 3.36
5081 8306 3.611766 ATTCCAGTCCTTTGTCCTACG 57.388 47.619 0.00 0.00 0.00 3.51
5087 8312 2.231721 AGTCCTTTGTCCTACGAAGAGC 59.768 50.000 8.34 2.05 41.15 4.09
5088 8313 1.201647 TCCTTTGTCCTACGAAGAGCG 59.798 52.381 8.34 0.00 41.15 5.03
5089 8314 1.201647 CCTTTGTCCTACGAAGAGCGA 59.798 52.381 8.34 0.00 41.15 4.93
5090 8315 2.251893 CTTTGTCCTACGAAGAGCGAC 58.748 52.381 1.45 0.00 41.15 5.19
5124 8357 7.797814 ATTGTGAGCAATACTGGTCTGACAATA 60.798 37.037 15.94 0.00 45.40 1.90
5129 8362 6.540189 AGCAATACTGGTCTGACAATACAATC 59.460 38.462 10.38 0.00 0.00 2.67
5130 8363 6.540189 GCAATACTGGTCTGACAATACAATCT 59.460 38.462 10.38 0.00 0.00 2.40
5131 8364 7.710907 GCAATACTGGTCTGACAATACAATCTA 59.289 37.037 10.38 0.00 0.00 1.98
5174 8407 3.190535 ACAAAATTGGACATACGCTCCAC 59.809 43.478 0.00 0.00 37.54 4.02
5236 8469 1.378119 CTCCTTACCCCGGGCAAAC 60.378 63.158 17.73 0.00 0.00 2.93
5356 8632 1.013596 TATGCCAAATGCGTCCTTCG 58.986 50.000 0.00 0.00 45.60 3.79
5392 8668 0.161024 CGAAAACGCGTCCTTCAGAC 59.839 55.000 24.97 7.33 42.54 3.51
5393 8669 1.499049 GAAAACGCGTCCTTCAGACT 58.501 50.000 22.30 0.00 43.91 3.24
5395 8671 2.806608 AAACGCGTCCTTCAGACTAA 57.193 45.000 14.44 0.00 43.91 2.24
5511 8796 1.590147 GGACCTCGACAACACCGAT 59.410 57.895 0.00 0.00 35.35 4.18
5571 8856 0.904649 ATCTGTCGCAGTGGGATCAA 59.095 50.000 13.56 2.28 32.61 2.57
5680 8974 8.200120 TCATGATCTAGAATCATTTCACGAGTT 58.800 33.333 12.32 0.00 36.69 3.01
5686 8980 9.020813 TCTAGAATCATTTCACGAGTTAATTCG 57.979 33.333 17.64 17.64 45.70 3.34
5694 9155 2.854777 CACGAGTTAATTCGCTCTCTGG 59.145 50.000 18.95 0.00 44.15 3.86
5729 9190 0.247735 CTCTGTGATCGACCGACGTC 60.248 60.000 5.18 5.18 43.13 4.34
5906 9498 3.817787 CCATGGCGATGGTCACAG 58.182 61.111 18.96 0.00 43.98 3.66
5907 9499 2.475466 CCATGGCGATGGTCACAGC 61.475 63.158 18.96 0.00 43.98 4.40
6258 9858 3.695606 GAGGAGAGGTGCGTGCCA 61.696 66.667 0.59 0.00 0.00 4.92
6327 9933 2.665185 AGCAACTTCACCGCCGTC 60.665 61.111 0.00 0.00 0.00 4.79
6480 10088 2.146920 GGGACTGAGTAGCTGTACCT 57.853 55.000 0.00 0.00 44.03 3.08
6481 10089 2.025898 GGGACTGAGTAGCTGTACCTC 58.974 57.143 0.00 0.00 44.03 3.85
6485 10093 2.309162 ACTGAGTAGCTGTACCTCCTGA 59.691 50.000 0.00 0.00 0.00 3.86
6486 10094 3.053245 ACTGAGTAGCTGTACCTCCTGAT 60.053 47.826 0.00 0.00 0.00 2.90
6680 10301 5.794894 ACCTACTCATTAACTGTCAAGGTG 58.205 41.667 0.00 0.00 33.11 4.00
6951 10586 5.821470 GGGTAGAATGGCTAAAGAAGGTAAC 59.179 44.000 0.00 0.00 0.00 2.50
6979 10614 2.098614 TGAAAGGCAAAGCTTGTGACA 58.901 42.857 14.36 0.00 0.00 3.58
7157 11123 0.248215 GATGCTTGGGCGATGAAACG 60.248 55.000 0.00 0.00 42.25 3.60
7194 11160 0.036952 AGGTGTTGAGCGTCCATGAG 60.037 55.000 0.00 0.00 0.00 2.90
7201 11168 0.820871 GAGCGTCCATGAGTTCCTCT 59.179 55.000 0.00 0.00 0.00 3.69
7279 11246 7.724287 TGATAGATTCAAGGTGAGATGAAGAG 58.276 38.462 0.00 0.00 38.80 2.85
7296 11264 2.447443 AGAGCACACAATCGGAGTCTA 58.553 47.619 0.00 0.00 0.00 2.59
7307 11275 6.810676 CACAATCGGAGTCTAGATATGAATGG 59.189 42.308 0.00 0.00 0.00 3.16
7344 11312 2.113139 CACCCGCAAGACCAACCT 59.887 61.111 0.00 0.00 43.02 3.50
7420 11388 3.438781 TGAACAACGAGATTTGTATGCCC 59.561 43.478 0.00 0.00 38.82 5.36
7465 11433 9.752228 TTTCTATATTATATTGCTTCATGGCCA 57.248 29.630 8.56 8.56 0.00 5.36
7467 11435 9.925545 TCTATATTATATTGCTTCATGGCCAAT 57.074 29.630 10.96 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.068474 GTTGTGAGAACCCGACATCG 58.932 55.000 0.00 0.00 39.44 3.84
6 7 1.068474 CGTTGTGAGAACCCGACATC 58.932 55.000 0.00 0.00 0.00 3.06
100 102 2.624316 TGTAGTCACGGTCGTTGATC 57.376 50.000 0.00 0.00 0.00 2.92
126 129 3.092301 TCGCCCACTGAGGATAGATATG 58.908 50.000 0.00 0.00 41.22 1.78
152 180 4.162320 TCTGGTTCAGATATGGTCTTCACC 59.838 45.833 0.00 0.00 38.19 4.02
231 262 4.160329 AGACCATATTCGAATGCCCTCTA 58.840 43.478 20.87 0.00 0.00 2.43
249 282 0.955919 CCCCAACGAGCTTGAAGACC 60.956 60.000 8.31 0.00 30.42 3.85
250 283 0.034896 TCCCCAACGAGCTTGAAGAC 59.965 55.000 8.31 0.00 30.42 3.01
251 284 0.762418 TTCCCCAACGAGCTTGAAGA 59.238 50.000 8.31 0.00 30.42 2.87
326 360 7.540400 TCATATTGTGCAAAATAAAGACAACGG 59.460 33.333 13.30 0.00 0.00 4.44
381 416 3.494251 ACGCTTCAAAATCATTGGTTTGC 59.506 39.130 0.00 0.00 35.21 3.68
424 459 3.009723 GTTTGCAATCTGGATCTTCCGA 58.990 45.455 0.00 0.00 40.17 4.55
434 470 4.707030 TCATAAGCTGGTTTGCAATCTG 57.293 40.909 0.00 1.48 34.99 2.90
438 474 4.935352 AAGTTCATAAGCTGGTTTGCAA 57.065 36.364 0.00 0.00 34.99 4.08
462 499 4.862350 TCCAAGATTTCAATGCATATGCG 58.138 39.130 22.21 8.85 45.83 4.73
482 519 1.146637 GCGTGCATCTGATGATCTCC 58.853 55.000 21.30 3.74 0.00 3.71
511 548 4.389992 CACGTATGCTTCACAAGATCACTT 59.610 41.667 0.00 0.00 36.73 3.16
604 649 7.756272 TGACAAATGCTGATGCTAAAAATACAG 59.244 33.333 0.00 0.00 40.48 2.74
643 688 0.665835 TCAAATCCACACACGGCAAC 59.334 50.000 0.00 0.00 0.00 4.17
658 703 9.932207 TGTTCTCCTTAAATACGAACTATCAAA 57.068 29.630 0.00 0.00 36.03 2.69
659 704 9.932207 TTGTTCTCCTTAAATACGAACTATCAA 57.068 29.630 0.00 0.00 36.03 2.57
660 705 9.362539 GTTGTTCTCCTTAAATACGAACTATCA 57.637 33.333 0.00 0.00 36.03 2.15
662 707 9.148104 GTGTTGTTCTCCTTAAATACGAACTAT 57.852 33.333 0.00 0.00 36.03 2.12
663 708 8.143193 TGTGTTGTTCTCCTTAAATACGAACTA 58.857 33.333 0.00 0.00 36.03 2.24
665 710 7.181143 TGTGTTGTTCTCCTTAAATACGAAC 57.819 36.000 0.00 0.00 35.69 3.95
666 711 7.972832 ATGTGTTGTTCTCCTTAAATACGAA 57.027 32.000 0.00 0.00 0.00 3.85
668 713 8.335356 CCATATGTGTTGTTCTCCTTAAATACG 58.665 37.037 1.24 0.00 0.00 3.06
669 714 9.391006 TCCATATGTGTTGTTCTCCTTAAATAC 57.609 33.333 1.24 0.00 0.00 1.89
670 715 9.967451 TTCCATATGTGTTGTTCTCCTTAAATA 57.033 29.630 1.24 0.00 0.00 1.40
671 716 8.877864 TTCCATATGTGTTGTTCTCCTTAAAT 57.122 30.769 1.24 0.00 0.00 1.40
672 717 8.739039 CATTCCATATGTGTTGTTCTCCTTAAA 58.261 33.333 1.24 0.00 0.00 1.52
673 718 7.148086 GCATTCCATATGTGTTGTTCTCCTTAA 60.148 37.037 1.24 0.00 0.00 1.85
674 719 6.318648 GCATTCCATATGTGTTGTTCTCCTTA 59.681 38.462 1.24 0.00 0.00 2.69
676 721 4.641989 GCATTCCATATGTGTTGTTCTCCT 59.358 41.667 1.24 0.00 0.00 3.69
677 722 4.202050 GGCATTCCATATGTGTTGTTCTCC 60.202 45.833 1.24 0.00 0.00 3.71
679 724 4.343231 TGGCATTCCATATGTGTTGTTCT 58.657 39.130 1.24 0.00 37.47 3.01
680 725 4.717233 TGGCATTCCATATGTGTTGTTC 57.283 40.909 1.24 0.00 37.47 3.18
693 738 6.485171 ACCTCCTATGTATTTATGGCATTCC 58.515 40.000 4.78 0.00 0.00 3.01
695 740 6.173339 CGACCTCCTATGTATTTATGGCATT 58.827 40.000 4.78 0.00 0.00 3.56
696 741 5.338381 CCGACCTCCTATGTATTTATGGCAT 60.338 44.000 4.88 4.88 0.00 4.40
697 742 4.020573 CCGACCTCCTATGTATTTATGGCA 60.021 45.833 0.00 0.00 0.00 4.92
698 743 4.222145 TCCGACCTCCTATGTATTTATGGC 59.778 45.833 0.00 0.00 0.00 4.40
699 744 5.995565 TCCGACCTCCTATGTATTTATGG 57.004 43.478 0.00 0.00 0.00 2.74
700 745 7.148407 GCAAATCCGACCTCCTATGTATTTATG 60.148 40.741 0.00 0.00 0.00 1.90
702 747 6.183361 TGCAAATCCGACCTCCTATGTATTTA 60.183 38.462 0.00 0.00 0.00 1.40
703 748 5.063880 GCAAATCCGACCTCCTATGTATTT 58.936 41.667 0.00 0.00 0.00 1.40
704 749 4.102524 TGCAAATCCGACCTCCTATGTATT 59.897 41.667 0.00 0.00 0.00 1.89
705 750 3.646162 TGCAAATCCGACCTCCTATGTAT 59.354 43.478 0.00 0.00 0.00 2.29
706 751 3.035363 TGCAAATCCGACCTCCTATGTA 58.965 45.455 0.00 0.00 0.00 2.29
707 752 1.837439 TGCAAATCCGACCTCCTATGT 59.163 47.619 0.00 0.00 0.00 2.29
708 753 2.620251 TGCAAATCCGACCTCCTATG 57.380 50.000 0.00 0.00 0.00 2.23
709 754 3.054361 ACTTTGCAAATCCGACCTCCTAT 60.054 43.478 13.23 0.00 0.00 2.57
710 755 2.304761 ACTTTGCAAATCCGACCTCCTA 59.695 45.455 13.23 0.00 0.00 2.94
711 756 1.073923 ACTTTGCAAATCCGACCTCCT 59.926 47.619 13.23 0.00 0.00 3.69
712 757 1.200020 CACTTTGCAAATCCGACCTCC 59.800 52.381 13.23 0.00 0.00 4.30
713 758 1.401539 GCACTTTGCAAATCCGACCTC 60.402 52.381 13.23 0.00 44.26 3.85
730 775 0.321671 TGTCAAGAGGGCTACTGCAC 59.678 55.000 0.00 0.00 44.43 4.57
731 776 1.055849 TTGTCAAGAGGGCTACTGCA 58.944 50.000 0.00 0.00 41.91 4.41
732 777 2.093235 AGATTGTCAAGAGGGCTACTGC 60.093 50.000 0.00 0.00 38.76 4.40
733 778 3.450457 AGAGATTGTCAAGAGGGCTACTG 59.550 47.826 0.00 0.00 0.00 2.74
734 779 3.450457 CAGAGATTGTCAAGAGGGCTACT 59.550 47.826 0.00 0.00 0.00 2.57
735 780 3.431486 CCAGAGATTGTCAAGAGGGCTAC 60.431 52.174 0.00 0.00 0.00 3.58
744 789 2.172505 ACCACACACCAGAGATTGTCAA 59.827 45.455 0.00 0.00 0.00 3.18
748 793 1.875514 CACACCACACACCAGAGATTG 59.124 52.381 0.00 0.00 0.00 2.67
756 801 3.276846 GCGTCCACACCACACACC 61.277 66.667 0.00 0.00 0.00 4.16
780 825 1.880340 CGGAGCAGAGGACATTCGC 60.880 63.158 0.00 0.00 0.00 4.70
789 834 8.826710 TGTGTATTTAATTTAATCGGAGCAGAG 58.173 33.333 0.00 0.00 0.00 3.35
793 838 9.434559 GTCTTGTGTATTTAATTTAATCGGAGC 57.565 33.333 0.00 0.00 0.00 4.70
807 852 3.009695 TGGATTCCCCGTCTTGTGTATTT 59.990 43.478 0.00 0.00 37.93 1.40
810 855 1.276989 GTGGATTCCCCGTCTTGTGTA 59.723 52.381 0.00 0.00 37.93 2.90
812 857 1.019278 CGTGGATTCCCCGTCTTGTG 61.019 60.000 0.00 0.00 37.93 3.33
818 863 0.463116 GCAATACGTGGATTCCCCGT 60.463 55.000 17.26 17.26 40.61 5.28
819 864 0.462937 TGCAATACGTGGATTCCCCG 60.463 55.000 6.00 6.00 37.93 5.73
825 870 3.262420 GTTGACTCTGCAATACGTGGAT 58.738 45.455 0.00 0.00 0.00 3.41
826 871 2.036604 TGTTGACTCTGCAATACGTGGA 59.963 45.455 0.00 0.00 0.00 4.02
828 873 2.157668 GGTGTTGACTCTGCAATACGTG 59.842 50.000 0.00 0.00 39.76 4.49
829 874 2.224185 TGGTGTTGACTCTGCAATACGT 60.224 45.455 0.00 0.00 39.76 3.57
831 876 3.753272 ACATGGTGTTGACTCTGCAATAC 59.247 43.478 0.00 0.00 38.62 1.89
886 2708 4.803426 CAGGAGACACGGCGAGGC 62.803 72.222 16.62 8.47 0.00 4.70
887 2709 3.343788 GACAGGAGACACGGCGAGG 62.344 68.421 16.62 7.98 0.00 4.63
888 2710 2.179517 GACAGGAGACACGGCGAG 59.820 66.667 16.62 8.85 0.00 5.03
889 2711 3.733960 CGACAGGAGACACGGCGA 61.734 66.667 16.62 0.00 38.68 5.54
892 2714 4.039357 ACGCGACAGGAGACACGG 62.039 66.667 15.93 0.00 0.00 4.94
893 2715 2.801162 CACGCGACAGGAGACACG 60.801 66.667 15.93 0.00 0.00 4.49
894 2716 3.106407 GCACGCGACAGGAGACAC 61.106 66.667 15.93 0.00 0.00 3.67
895 2717 3.268965 GAGCACGCGACAGGAGACA 62.269 63.158 15.93 0.00 0.00 3.41
896 2718 2.505118 GAGCACGCGACAGGAGAC 60.505 66.667 15.93 0.00 0.00 3.36
909 2731 0.620556 GTGGATGGAAGGAAGGAGCA 59.379 55.000 0.00 0.00 0.00 4.26
910 2732 0.620556 TGTGGATGGAAGGAAGGAGC 59.379 55.000 0.00 0.00 0.00 4.70
911 2733 3.439857 TTTGTGGATGGAAGGAAGGAG 57.560 47.619 0.00 0.00 0.00 3.69
912 2734 3.397618 TCTTTTGTGGATGGAAGGAAGGA 59.602 43.478 0.00 0.00 0.00 3.36
913 2735 3.766545 TCTTTTGTGGATGGAAGGAAGG 58.233 45.455 0.00 0.00 0.00 3.46
914 2736 5.279156 CCTTTCTTTTGTGGATGGAAGGAAG 60.279 44.000 0.00 0.00 35.45 3.46
915 2737 4.588528 CCTTTCTTTTGTGGATGGAAGGAA 59.411 41.667 0.00 0.00 0.00 3.36
923 2752 3.005791 CGGCTTTCCTTTCTTTTGTGGAT 59.994 43.478 0.00 0.00 0.00 3.41
928 2757 1.605457 GGCCGGCTTTCCTTTCTTTTG 60.605 52.381 28.56 0.00 0.00 2.44
979 2822 1.080705 CTGCCTGCTTTGCTTGCTC 60.081 57.895 0.00 0.00 0.00 4.26
988 2831 0.252479 CCTCTCATGTCTGCCTGCTT 59.748 55.000 0.00 0.00 0.00 3.91
989 2832 0.616964 TCCTCTCATGTCTGCCTGCT 60.617 55.000 0.00 0.00 0.00 4.24
990 2833 0.179078 CTCCTCTCATGTCTGCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
991 2834 0.464870 CCTCCTCTCATGTCTGCCTG 59.535 60.000 0.00 0.00 0.00 4.85
992 2835 0.337773 TCCTCCTCTCATGTCTGCCT 59.662 55.000 0.00 0.00 0.00 4.75
993 2836 0.752054 CTCCTCCTCTCATGTCTGCC 59.248 60.000 0.00 0.00 0.00 4.85
994 2837 0.752054 CCTCCTCCTCTCATGTCTGC 59.248 60.000 0.00 0.00 0.00 4.26
995 2838 0.752054 GCCTCCTCCTCTCATGTCTG 59.248 60.000 0.00 0.00 0.00 3.51
996 2839 0.337773 TGCCTCCTCCTCTCATGTCT 59.662 55.000 0.00 0.00 0.00 3.41
1030 2873 4.135153 GAGAAGGAGCAGGCGCGA 62.135 66.667 12.10 0.00 45.49 5.87
1211 3067 2.110721 AGGCCAATGGAAAGGAAAGTCT 59.889 45.455 5.01 0.00 0.00 3.24
1265 3139 1.805945 GAGCTTGGTCCGTGCTACG 60.806 63.158 8.21 2.27 42.11 3.51
1266 3140 1.805945 CGAGCTTGGTCCGTGCTAC 60.806 63.158 8.21 3.05 37.16 3.58
1273 3147 2.435059 GAGGTGCGAGCTTGGTCC 60.435 66.667 2.37 0.00 0.00 4.46
1276 3150 0.392193 AATCAGAGGTGCGAGCTTGG 60.392 55.000 2.37 0.00 0.00 3.61
1282 3156 1.672854 CGGGGTAATCAGAGGTGCGA 61.673 60.000 0.00 0.00 0.00 5.10
1283 3157 1.227263 CGGGGTAATCAGAGGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
1288 3162 1.051812 ATGGAGCGGGGTAATCAGAG 58.948 55.000 0.00 0.00 0.00 3.35
1289 3163 0.758734 CATGGAGCGGGGTAATCAGA 59.241 55.000 0.00 0.00 0.00 3.27
1290 3164 0.758734 TCATGGAGCGGGGTAATCAG 59.241 55.000 0.00 0.00 0.00 2.90
1292 3166 1.048601 TCTCATGGAGCGGGGTAATC 58.951 55.000 0.00 0.00 0.00 1.75
1293 3167 1.349026 CATCTCATGGAGCGGGGTAAT 59.651 52.381 0.00 0.00 0.00 1.89
1295 3169 1.758440 GCATCTCATGGAGCGGGGTA 61.758 60.000 0.00 0.00 0.00 3.69
1296 3170 3.112205 GCATCTCATGGAGCGGGGT 62.112 63.158 0.00 0.00 0.00 4.95
1298 3172 1.597302 CTGCATCTCATGGAGCGGG 60.597 63.158 0.00 0.00 41.79 6.13
1299 3173 0.879400 GTCTGCATCTCATGGAGCGG 60.879 60.000 0.36 0.00 46.81 5.52
1300 3174 0.179092 TGTCTGCATCTCATGGAGCG 60.179 55.000 0.36 0.00 46.81 5.03
1301 3175 2.257691 ATGTCTGCATCTCATGGAGC 57.742 50.000 0.36 0.00 46.81 4.70
1313 3187 5.409826 ACTTTTAGAACTGCACTATGTCTGC 59.590 40.000 0.00 0.00 35.03 4.26
1322 3196 6.423042 GTCTGAAGAACTTTTAGAACTGCAC 58.577 40.000 0.00 0.00 0.00 4.57
1324 3198 5.333416 CGGTCTGAAGAACTTTTAGAACTGC 60.333 44.000 12.37 0.00 0.00 4.40
1326 3200 5.298347 CCGGTCTGAAGAACTTTTAGAACT 58.702 41.667 0.00 0.00 0.00 3.01
1327 3201 4.083961 GCCGGTCTGAAGAACTTTTAGAAC 60.084 45.833 1.90 0.00 0.00 3.01
1328 3202 4.062991 GCCGGTCTGAAGAACTTTTAGAA 58.937 43.478 1.90 0.00 0.00 2.10
1329 3203 3.070446 TGCCGGTCTGAAGAACTTTTAGA 59.930 43.478 1.90 0.00 0.00 2.10
1332 3206 2.222027 CTGCCGGTCTGAAGAACTTTT 58.778 47.619 1.90 0.00 0.00 2.27
1333 3207 1.543429 CCTGCCGGTCTGAAGAACTTT 60.543 52.381 1.90 0.00 0.00 2.66
1419 3302 1.435577 AGTGAACCAAATACGCGGAC 58.564 50.000 12.47 0.00 0.00 4.79
1420 3303 2.231964 AGTAGTGAACCAAATACGCGGA 59.768 45.455 12.47 0.00 0.00 5.54
1421 3304 2.347452 CAGTAGTGAACCAAATACGCGG 59.653 50.000 12.47 0.00 0.00 6.46
1422 3305 3.247442 TCAGTAGTGAACCAAATACGCG 58.753 45.455 3.53 3.53 0.00 6.01
1439 3323 5.738909 AGTTTTCTCAATGATCGGATCAGT 58.261 37.500 23.59 19.37 43.53 3.41
1460 3345 1.523758 GTGAAATTCACTGGCGGAGT 58.476 50.000 18.03 0.00 43.73 3.85
1468 3353 4.992769 GGGAGTTTCAGGGTGAAATTCACT 60.993 45.833 23.30 4.17 46.48 3.41
1477 3362 2.887151 ATTCTGGGAGTTTCAGGGTG 57.113 50.000 0.00 0.00 33.36 4.61
1493 3378 1.287425 CGGCGAGGGTTGAGTTATTC 58.713 55.000 0.00 0.00 0.00 1.75
1610 3658 3.047877 AACTGGCCGCTTGTACGC 61.048 61.111 0.00 0.00 0.00 4.42
1613 3661 0.602638 CTGACAACTGGCCGCTTGTA 60.603 55.000 15.88 6.23 30.59 2.41
1645 3698 1.152333 AAAGCAAGAACCCCACCCC 60.152 57.895 0.00 0.00 0.00 4.95
1646 3699 2.049435 CAAAGCAAGAACCCCACCC 58.951 57.895 0.00 0.00 0.00 4.61
1647 3700 1.367471 GCAAAGCAAGAACCCCACC 59.633 57.895 0.00 0.00 0.00 4.61
1653 3706 2.049156 GGCCGGCAAAGCAAGAAC 60.049 61.111 30.85 1.84 0.00 3.01
1703 3756 2.487532 GGAGGATGCATGCACCTGC 61.488 63.158 32.83 31.35 42.62 4.85
1772 3837 0.530650 TCGATCTTCCGCTGGAATGC 60.531 55.000 9.88 3.48 41.23 3.56
1941 4087 5.291128 GCGCATATTCCATGGTATGTACTAC 59.709 44.000 18.70 5.87 32.27 2.73
1942 4088 5.416083 GCGCATATTCCATGGTATGTACTA 58.584 41.667 18.70 0.00 32.27 1.82
1943 4089 4.253685 GCGCATATTCCATGGTATGTACT 58.746 43.478 18.70 0.00 32.27 2.73
1950 4096 2.606961 CGCGCGCATATTCCATGGT 61.607 57.895 32.61 0.00 0.00 3.55
1973 4119 2.817901 ACGGGAATCATACTGCGTAAC 58.182 47.619 0.00 0.00 0.00 2.50
1974 4120 3.119065 TCAACGGGAATCATACTGCGTAA 60.119 43.478 0.00 0.00 0.00 3.18
2060 4610 2.048597 TGTCGTCCACACCATCGC 60.049 61.111 0.00 0.00 0.00 4.58
2189 4805 8.882415 TTCAGAAAACGAAAATGTACTAGAGT 57.118 30.769 0.00 0.00 0.00 3.24
2258 4877 0.673985 TAATCAGATCAGGGACGCCG 59.326 55.000 0.00 0.00 0.00 6.46
2261 4880 4.927978 AGAAGTAATCAGATCAGGGACG 57.072 45.455 0.00 0.00 0.00 4.79
2369 4998 4.082463 TCTGCTCAATGTATGTGTCACGTA 60.082 41.667 0.49 0.49 0.00 3.57
2370 4999 2.995939 CTGCTCAATGTATGTGTCACGT 59.004 45.455 2.65 2.65 0.00 4.49
2372 5001 3.063180 GCTCTGCTCAATGTATGTGTCAC 59.937 47.826 0.00 0.00 0.00 3.67
2373 5002 3.264947 GCTCTGCTCAATGTATGTGTCA 58.735 45.455 0.00 0.00 0.00 3.58
2374 5003 3.264947 TGCTCTGCTCAATGTATGTGTC 58.735 45.455 0.00 0.00 0.00 3.67
2375 5004 3.339253 TGCTCTGCTCAATGTATGTGT 57.661 42.857 0.00 0.00 0.00 3.72
2376 5005 4.575236 AGATTGCTCTGCTCAATGTATGTG 59.425 41.667 0.00 0.00 34.59 3.21
2377 5006 4.778579 AGATTGCTCTGCTCAATGTATGT 58.221 39.130 0.00 0.00 34.59 2.29
2378 5007 5.296035 TGAAGATTGCTCTGCTCAATGTATG 59.704 40.000 0.00 0.00 34.59 2.39
2503 5213 2.607750 GAGCCCCTGTCCCTGACA 60.608 66.667 0.00 0.00 40.50 3.58
2576 5286 2.989840 GTGACTGACATTTGAGAGTCCG 59.010 50.000 0.00 0.00 35.03 4.79
2591 5301 3.802139 ACGTGATGTGTTGTTAGTGACTG 59.198 43.478 0.00 0.00 0.00 3.51
2595 5305 4.761745 CAAGACGTGATGTGTTGTTAGTG 58.238 43.478 6.52 0.00 44.52 2.74
2623 5338 8.938883 AGTAATGGACAGATACAAAGTGGATAT 58.061 33.333 0.00 0.00 0.00 1.63
2634 5349 7.865385 GTGATTCTCTGAGTAATGGACAGATAC 59.135 40.741 4.32 0.00 39.42 2.24
2646 5361 5.770162 TGAAGTCAGTGTGATTCTCTGAGTA 59.230 40.000 4.32 0.00 44.47 2.59
2648 5363 5.131594 TGAAGTCAGTGTGATTCTCTGAG 57.868 43.478 0.00 0.00 44.04 3.35
2695 5411 3.041940 CTGTTGGACACCGCGACC 61.042 66.667 8.23 6.15 0.00 4.79
2707 5423 0.456142 TCGCGAAGACGATCCTGTTG 60.456 55.000 6.20 0.00 42.66 3.33
2828 5549 2.094575 CGTTTCAGTGAACCGTCAACAA 59.905 45.455 14.03 0.00 34.87 2.83
2835 5556 2.549282 CGCCGTTTCAGTGAACCG 59.451 61.111 15.16 15.16 0.00 4.44
2863 5588 1.913778 ACAGTCATCTGGCATTGCAA 58.086 45.000 11.39 0.00 45.14 4.08
2925 5650 1.207811 CCTTTCATGCCCCATTCAACC 59.792 52.381 0.00 0.00 0.00 3.77
3093 5822 4.842531 CATGGCCTCATGGGTATACATA 57.157 45.455 3.32 0.00 45.19 2.29
3123 5862 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3125 5864 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3161 5900 9.990360 TCATTTTGCTTCGTATATAGTCCATAA 57.010 29.630 0.00 0.00 0.00 1.90
3162 5901 9.639601 CTCATTTTGCTTCGTATATAGTCCATA 57.360 33.333 0.00 0.00 0.00 2.74
3163 5902 8.150945 ACTCATTTTGCTTCGTATATAGTCCAT 58.849 33.333 0.00 0.00 0.00 3.41
3164 5903 7.438160 CACTCATTTTGCTTCGTATATAGTCCA 59.562 37.037 0.00 0.00 0.00 4.02
3165 5904 7.652105 TCACTCATTTTGCTTCGTATATAGTCC 59.348 37.037 0.00 0.00 0.00 3.85
3166 5905 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
3167 5906 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
3169 5908 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
3170 5909 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
3171 5910 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
3172 5911 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3173 5912 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
3174 5913 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
3175 5914 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
3176 5915 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3216 5955 9.747898 TTCAATACAAAGTACAAAGGGATGTAT 57.252 29.630 0.00 0.00 38.03 2.29
3217 5956 9.575868 TTTCAATACAAAGTACAAAGGGATGTA 57.424 29.630 0.00 0.00 34.75 2.29
3218 5957 8.472007 TTTCAATACAAAGTACAAAGGGATGT 57.528 30.769 0.00 0.00 37.32 3.06
3234 5973 8.250332 GCCTGTCTTTTTGGATATTTCAATACA 58.750 33.333 0.00 0.00 0.00 2.29
3235 5974 7.706607 GGCCTGTCTTTTTGGATATTTCAATAC 59.293 37.037 0.00 0.00 0.00 1.89
3236 5975 7.619302 AGGCCTGTCTTTTTGGATATTTCAATA 59.381 33.333 3.11 0.00 0.00 1.90
3237 5976 6.441604 AGGCCTGTCTTTTTGGATATTTCAAT 59.558 34.615 3.11 0.00 0.00 2.57
3238 5977 5.779771 AGGCCTGTCTTTTTGGATATTTCAA 59.220 36.000 3.11 0.00 0.00 2.69
3239 5978 5.332743 AGGCCTGTCTTTTTGGATATTTCA 58.667 37.500 3.11 0.00 0.00 2.69
3240 5979 5.921962 AGGCCTGTCTTTTTGGATATTTC 57.078 39.130 3.11 0.00 0.00 2.17
3241 5980 6.019108 AGAAGGCCTGTCTTTTTGGATATTT 58.981 36.000 5.69 0.00 0.00 1.40
3242 5981 5.583932 AGAAGGCCTGTCTTTTTGGATATT 58.416 37.500 5.69 0.00 0.00 1.28
3243 5982 5.198602 AGAAGGCCTGTCTTTTTGGATAT 57.801 39.130 5.69 0.00 0.00 1.63
3244 5983 4.657814 AGAAGGCCTGTCTTTTTGGATA 57.342 40.909 5.69 0.00 0.00 2.59
3245 5984 3.532641 AGAAGGCCTGTCTTTTTGGAT 57.467 42.857 5.69 0.00 0.00 3.41
3246 5985 3.312736 AAGAAGGCCTGTCTTTTTGGA 57.687 42.857 18.80 0.00 31.10 3.53
3247 5986 3.493176 CCAAAGAAGGCCTGTCTTTTTGG 60.493 47.826 26.83 23.03 41.47 3.28
3248 5987 3.132824 ACCAAAGAAGGCCTGTCTTTTTG 59.867 43.478 26.83 23.43 41.47 2.44
3249 5988 3.374764 ACCAAAGAAGGCCTGTCTTTTT 58.625 40.909 26.83 18.96 41.47 1.94
3250 5989 3.032265 ACCAAAGAAGGCCTGTCTTTT 57.968 42.857 26.83 17.52 41.47 2.27
3251 5990 2.755952 ACCAAAGAAGGCCTGTCTTT 57.244 45.000 25.08 25.08 44.30 2.52
3252 5991 2.755952 AACCAAAGAAGGCCTGTCTT 57.244 45.000 18.80 18.80 36.90 3.01
3253 5992 2.755952 AAACCAAAGAAGGCCTGTCT 57.244 45.000 5.69 8.95 0.00 3.41
3254 5993 4.640647 CCTATAAACCAAAGAAGGCCTGTC 59.359 45.833 5.69 6.41 0.00 3.51
3255 5994 4.569865 CCCTATAAACCAAAGAAGGCCTGT 60.570 45.833 5.69 0.00 0.00 4.00
3256 5995 3.954258 CCCTATAAACCAAAGAAGGCCTG 59.046 47.826 5.69 0.00 0.00 4.85
3257 5996 3.596500 ACCCTATAAACCAAAGAAGGCCT 59.403 43.478 0.00 0.00 0.00 5.19
3258 5997 3.977312 ACCCTATAAACCAAAGAAGGCC 58.023 45.455 0.00 0.00 0.00 5.19
3259 5998 5.131067 CCTACCCTATAAACCAAAGAAGGC 58.869 45.833 0.00 0.00 0.00 4.35
3260 5999 5.430745 TCCCTACCCTATAAACCAAAGAAGG 59.569 44.000 0.00 0.00 0.00 3.46
3261 6000 6.570654 TCCCTACCCTATAAACCAAAGAAG 57.429 41.667 0.00 0.00 0.00 2.85
3262 6001 6.973700 TTCCCTACCCTATAAACCAAAGAA 57.026 37.500 0.00 0.00 0.00 2.52
3263 6002 6.973700 TTTCCCTACCCTATAAACCAAAGA 57.026 37.500 0.00 0.00 0.00 2.52
3264 6003 7.351166 TGATTTCCCTACCCTATAAACCAAAG 58.649 38.462 0.00 0.00 0.00 2.77
3265 6004 7.286667 TGATTTCCCTACCCTATAAACCAAA 57.713 36.000 0.00 0.00 0.00 3.28
3266 6005 6.911993 TGATTTCCCTACCCTATAAACCAA 57.088 37.500 0.00 0.00 0.00 3.67
3267 6006 7.238933 CCTATGATTTCCCTACCCTATAAACCA 59.761 40.741 0.00 0.00 0.00 3.67
3268 6007 7.460082 TCCTATGATTTCCCTACCCTATAAACC 59.540 40.741 0.00 0.00 0.00 3.27
3269 6008 8.445361 TCCTATGATTTCCCTACCCTATAAAC 57.555 38.462 0.00 0.00 0.00 2.01
3270 6009 9.643778 ATTCCTATGATTTCCCTACCCTATAAA 57.356 33.333 0.00 0.00 0.00 1.40
3272 6011 9.953429 CTATTCCTATGATTTCCCTACCCTATA 57.047 37.037 0.00 0.00 0.00 1.31
3273 6012 7.851968 CCTATTCCTATGATTTCCCTACCCTAT 59.148 40.741 0.00 0.00 0.00 2.57
3274 6013 7.021295 TCCTATTCCTATGATTTCCCTACCCTA 59.979 40.741 0.00 0.00 0.00 3.53
3275 6014 6.032693 CCTATTCCTATGATTTCCCTACCCT 58.967 44.000 0.00 0.00 0.00 4.34
3276 6015 6.030082 TCCTATTCCTATGATTTCCCTACCC 58.970 44.000 0.00 0.00 0.00 3.69
3277 6016 7.569599 TTCCTATTCCTATGATTTCCCTACC 57.430 40.000 0.00 0.00 0.00 3.18
3278 6017 8.661345 ACTTTCCTATTCCTATGATTTCCCTAC 58.339 37.037 0.00 0.00 0.00 3.18
3279 6018 8.814448 ACTTTCCTATTCCTATGATTTCCCTA 57.186 34.615 0.00 0.00 0.00 3.53
3280 6019 7.350921 TGACTTTCCTATTCCTATGATTTCCCT 59.649 37.037 0.00 0.00 0.00 4.20
3281 6020 7.518188 TGACTTTCCTATTCCTATGATTTCCC 58.482 38.462 0.00 0.00 0.00 3.97
3285 6024 9.621239 TCCTATGACTTTCCTATTCCTATGATT 57.379 33.333 0.00 0.00 0.00 2.57
3286 6025 9.621239 TTCCTATGACTTTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
3287 6026 9.447279 TTTCCTATGACTTTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
3290 6029 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3291 6030 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3292 6031 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3294 6033 9.790344 CATCTCATTTCCTATGACTTTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3295 6034 9.163894 TCATCTCATTTCCTATGACTTTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3296 6035 8.553085 TCATCTCATTTCCTATGACTTTCCTA 57.447 34.615 0.00 0.00 0.00 2.94
3297 6036 7.346698 TCTCATCTCATTTCCTATGACTTTCCT 59.653 37.037 0.00 0.00 0.00 3.36
3298 6037 7.504403 TCTCATCTCATTTCCTATGACTTTCC 58.496 38.462 0.00 0.00 0.00 3.13
3299 6038 8.991026 CATCTCATCTCATTTCCTATGACTTTC 58.009 37.037 0.00 0.00 0.00 2.62
3300 6039 7.444792 GCATCTCATCTCATTTCCTATGACTTT 59.555 37.037 0.00 0.00 0.00 2.66
3301 6040 6.935771 GCATCTCATCTCATTTCCTATGACTT 59.064 38.462 0.00 0.00 0.00 3.01
3302 6041 6.042897 TGCATCTCATCTCATTTCCTATGACT 59.957 38.462 0.00 0.00 0.00 3.41
3303 6042 6.228995 TGCATCTCATCTCATTTCCTATGAC 58.771 40.000 0.00 0.00 0.00 3.06
3304 6043 6.429521 TGCATCTCATCTCATTTCCTATGA 57.570 37.500 0.00 0.00 0.00 2.15
3305 6044 7.310072 GATGCATCTCATCTCATTTCCTATG 57.690 40.000 19.70 0.00 46.29 2.23
3321 6060 6.436738 ACTCATAGGATTTGAGATGCATCT 57.563 37.500 29.09 29.09 42.63 2.90
3322 6061 7.830940 CTACTCATAGGATTTGAGATGCATC 57.169 40.000 19.37 19.37 42.63 3.91
3338 6077 8.589338 GCATCTTCTTTCCTATTCCTACTCATA 58.411 37.037 0.00 0.00 0.00 2.15
3339 6078 7.449247 GCATCTTCTTTCCTATTCCTACTCAT 58.551 38.462 0.00 0.00 0.00 2.90
3340 6079 6.183361 GGCATCTTCTTTCCTATTCCTACTCA 60.183 42.308 0.00 0.00 0.00 3.41
3341 6080 6.227522 GGCATCTTCTTTCCTATTCCTACTC 58.772 44.000 0.00 0.00 0.00 2.59
3342 6081 5.072464 GGGCATCTTCTTTCCTATTCCTACT 59.928 44.000 0.00 0.00 0.00 2.57
3343 6082 5.072464 AGGGCATCTTCTTTCCTATTCCTAC 59.928 44.000 0.00 0.00 0.00 3.18
3344 6083 5.227593 AGGGCATCTTCTTTCCTATTCCTA 58.772 41.667 0.00 0.00 0.00 2.94
3345 6084 4.050757 AGGGCATCTTCTTTCCTATTCCT 58.949 43.478 0.00 0.00 0.00 3.36
3346 6085 4.445557 AGGGCATCTTCTTTCCTATTCC 57.554 45.455 0.00 0.00 0.00 3.01
3347 6086 5.888161 TCAAAGGGCATCTTCTTTCCTATTC 59.112 40.000 0.00 0.00 33.94 1.75
3348 6087 5.831103 TCAAAGGGCATCTTCTTTCCTATT 58.169 37.500 0.00 0.00 33.94 1.73
3349 6088 5.456921 TCAAAGGGCATCTTCTTTCCTAT 57.543 39.130 0.00 0.00 33.94 2.57
3350 6089 4.927267 TCAAAGGGCATCTTCTTTCCTA 57.073 40.909 0.00 0.00 33.94 2.94
3351 6090 3.814504 TCAAAGGGCATCTTCTTTCCT 57.185 42.857 0.00 0.00 33.94 3.36
3352 6091 4.463891 TGAATCAAAGGGCATCTTCTTTCC 59.536 41.667 0.00 0.00 33.94 3.13
3353 6092 5.184671 AGTGAATCAAAGGGCATCTTCTTTC 59.815 40.000 0.00 0.00 33.94 2.62
3354 6093 5.082425 AGTGAATCAAAGGGCATCTTCTTT 58.918 37.500 0.00 0.00 33.94 2.52
3355 6094 4.670765 AGTGAATCAAAGGGCATCTTCTT 58.329 39.130 0.00 0.00 33.94 2.52
3356 6095 4.313020 AGTGAATCAAAGGGCATCTTCT 57.687 40.909 0.00 0.00 33.94 2.85
3357 6096 4.460382 TGAAGTGAATCAAAGGGCATCTTC 59.540 41.667 0.00 0.00 33.94 2.87
3358 6097 4.410099 TGAAGTGAATCAAAGGGCATCTT 58.590 39.130 0.00 0.00 37.28 2.40
3359 6098 4.038271 TGAAGTGAATCAAAGGGCATCT 57.962 40.909 0.00 0.00 0.00 2.90
3360 6099 4.996788 ATGAAGTGAATCAAAGGGCATC 57.003 40.909 0.00 0.00 32.06 3.91
3361 6100 4.891756 CCTATGAAGTGAATCAAAGGGCAT 59.108 41.667 0.00 0.00 32.06 4.40
3362 6101 4.263905 ACCTATGAAGTGAATCAAAGGGCA 60.264 41.667 0.00 0.00 32.06 5.36
3363 6102 4.273318 ACCTATGAAGTGAATCAAAGGGC 58.727 43.478 0.00 0.00 32.06 5.19
3364 6103 6.840780 AAACCTATGAAGTGAATCAAAGGG 57.159 37.500 0.00 0.00 32.06 3.95
3387 6126 7.175104 ACATTAGGCTAGACTCAATGGAAAAA 58.825 34.615 21.71 4.12 32.20 1.94
3388 6127 6.721318 ACATTAGGCTAGACTCAATGGAAAA 58.279 36.000 21.71 4.71 32.20 2.29
3389 6128 6.313519 ACATTAGGCTAGACTCAATGGAAA 57.686 37.500 21.71 5.31 32.20 3.13
3390 6129 5.957771 ACATTAGGCTAGACTCAATGGAA 57.042 39.130 21.71 5.90 32.20 3.53
3391 6130 5.957771 AACATTAGGCTAGACTCAATGGA 57.042 39.130 21.71 0.00 32.20 3.41
3392 6131 8.682936 AATAAACATTAGGCTAGACTCAATGG 57.317 34.615 21.71 6.84 32.20 3.16
3395 6134 9.174166 GGAAAATAAACATTAGGCTAGACTCAA 57.826 33.333 0.00 0.00 0.00 3.02
3396 6135 8.548877 AGGAAAATAAACATTAGGCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
3397 6136 8.966069 AGGAAAATAAACATTAGGCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
3410 6149 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
3411 6150 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
3412 6151 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
3415 6154 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
3416 6155 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3417 6156 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3418 6157 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3419 6158 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3420 6159 6.270927 TCTTCCTATCCTCCACATTTCATAGG 59.729 42.308 0.00 0.00 35.93 2.57
3421 6160 7.308450 TCTTCCTATCCTCCACATTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
3422 6161 7.690454 TTCTTCCTATCCTCCACATTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
3423 6162 6.581388 TTCTTCCTATCCTCCACATTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
3424 6163 6.581388 ATTCTTCCTATCCTCCACATTTCA 57.419 37.500 0.00 0.00 0.00 2.69
3425 6164 6.488344 GGAATTCTTCCTATCCTCCACATTTC 59.512 42.308 5.23 0.00 46.57 2.17
3426 6165 6.368805 GGAATTCTTCCTATCCTCCACATTT 58.631 40.000 5.23 0.00 46.57 2.32
3427 6166 5.946486 GGAATTCTTCCTATCCTCCACATT 58.054 41.667 5.23 0.00 46.57 2.71
3428 6167 5.574970 GGAATTCTTCCTATCCTCCACAT 57.425 43.478 5.23 0.00 46.57 3.21
3443 6182 9.860898 GTTTTATGCAATTTACTCAGGAATTCT 57.139 29.630 5.23 0.00 0.00 2.40
3444 6183 9.087424 GGTTTTATGCAATTTACTCAGGAATTC 57.913 33.333 0.00 0.00 0.00 2.17
3445 6184 8.592809 TGGTTTTATGCAATTTACTCAGGAATT 58.407 29.630 0.00 0.00 0.00 2.17
3446 6185 8.034804 GTGGTTTTATGCAATTTACTCAGGAAT 58.965 33.333 0.00 0.00 0.00 3.01
3447 6186 7.375053 GTGGTTTTATGCAATTTACTCAGGAA 58.625 34.615 0.00 0.00 0.00 3.36
3448 6187 6.071616 GGTGGTTTTATGCAATTTACTCAGGA 60.072 38.462 0.00 0.00 0.00 3.86
3449 6188 6.099341 GGTGGTTTTATGCAATTTACTCAGG 58.901 40.000 0.00 0.00 0.00 3.86
3450 6189 6.686630 TGGTGGTTTTATGCAATTTACTCAG 58.313 36.000 0.00 0.00 0.00 3.35
3451 6190 6.266558 ACTGGTGGTTTTATGCAATTTACTCA 59.733 34.615 0.00 0.00 0.00 3.41
3464 6203 3.637769 AGCCTTCAAACTGGTGGTTTTA 58.362 40.909 0.00 0.00 44.77 1.52
3648 6394 0.725117 CGTCCCAAACATCGCCTAAC 59.275 55.000 0.00 0.00 0.00 2.34
3650 6396 0.322322 AACGTCCCAAACATCGCCTA 59.678 50.000 0.00 0.00 0.00 3.93
3651 6397 0.322322 TAACGTCCCAAACATCGCCT 59.678 50.000 0.00 0.00 0.00 5.52
4057 6826 2.527624 TGGTGCCTCTGCCTCTGT 60.528 61.111 0.00 0.00 36.33 3.41
4192 6963 2.747855 CAGCGTCCTTTGCCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
4354 7406 0.527565 CAAGAATCAAGTTGCCCCCG 59.472 55.000 0.00 0.00 0.00 5.73
4361 7413 4.015084 CCAGATCTGGCAAGAATCAAGTT 58.985 43.478 28.45 0.00 44.73 2.66
4376 7428 0.344790 ACCATCCCTCACCCAGATCT 59.655 55.000 0.00 0.00 0.00 2.75
4391 7443 1.828979 AATTCACCGCCGTTAACCAT 58.171 45.000 0.00 0.00 0.00 3.55
4570 7626 1.112113 GATGGGGTTCGCTAGTCAGA 58.888 55.000 0.00 0.00 0.00 3.27
4581 7637 3.343617 CACGTTTATGACAGATGGGGTT 58.656 45.455 0.00 0.00 0.00 4.11
4701 7760 4.394729 CACCAGTTTGAAGGCTAGGTTTA 58.605 43.478 0.00 0.00 0.00 2.01
4747 7806 9.745018 GGAATGAAATCATATTTCTATGGAGGA 57.255 33.333 12.25 0.00 36.23 3.71
4748 7807 9.750783 AGGAATGAAATCATATTTCTATGGAGG 57.249 33.333 12.25 0.00 36.23 4.30
4761 7820 9.880157 CCTTTTGATTTGTAGGAATGAAATCAT 57.120 29.630 0.00 0.00 42.65 2.45
4762 7821 7.818930 GCCTTTTGATTTGTAGGAATGAAATCA 59.181 33.333 0.00 0.00 41.88 2.57
4763 7822 8.037166 AGCCTTTTGATTTGTAGGAATGAAATC 58.963 33.333 0.00 0.00 36.86 2.17
4764 7823 7.910584 AGCCTTTTGATTTGTAGGAATGAAAT 58.089 30.769 0.00 0.00 0.00 2.17
4765 7824 7.233348 AGAGCCTTTTGATTTGTAGGAATGAAA 59.767 33.333 0.00 0.00 0.00 2.69
4766 7825 6.721208 AGAGCCTTTTGATTTGTAGGAATGAA 59.279 34.615 0.00 0.00 0.00 2.57
4767 7826 6.248433 AGAGCCTTTTGATTTGTAGGAATGA 58.752 36.000 0.00 0.00 0.00 2.57
4768 7827 6.521151 AGAGCCTTTTGATTTGTAGGAATG 57.479 37.500 0.00 0.00 0.00 2.67
4769 7828 8.650143 TTTAGAGCCTTTTGATTTGTAGGAAT 57.350 30.769 0.00 0.00 0.00 3.01
4770 7829 7.942341 TCTTTAGAGCCTTTTGATTTGTAGGAA 59.058 33.333 0.00 0.00 0.00 3.36
4771 7830 7.458397 TCTTTAGAGCCTTTTGATTTGTAGGA 58.542 34.615 0.00 0.00 0.00 2.94
4772 7831 7.687941 TCTTTAGAGCCTTTTGATTTGTAGG 57.312 36.000 0.00 0.00 0.00 3.18
4775 7834 9.836864 AAATTTCTTTAGAGCCTTTTGATTTGT 57.163 25.926 0.00 0.00 0.00 2.83
4779 7838 9.494271 GGAAAAATTTCTTTAGAGCCTTTTGAT 57.506 29.630 5.91 0.00 37.35 2.57
4780 7839 8.704668 AGGAAAAATTTCTTTAGAGCCTTTTGA 58.295 29.630 5.91 0.00 37.35 2.69
4781 7840 8.893219 AGGAAAAATTTCTTTAGAGCCTTTTG 57.107 30.769 5.91 0.00 37.35 2.44
4782 7841 9.982651 GTAGGAAAAATTTCTTTAGAGCCTTTT 57.017 29.630 5.91 0.00 37.35 2.27
4783 7842 9.143155 TGTAGGAAAAATTTCTTTAGAGCCTTT 57.857 29.630 5.91 0.00 37.35 3.11
4784 7843 8.706322 TGTAGGAAAAATTTCTTTAGAGCCTT 57.294 30.769 5.91 0.00 37.35 4.35
4785 7844 8.706322 TTGTAGGAAAAATTTCTTTAGAGCCT 57.294 30.769 5.91 0.00 37.35 4.58
4786 7845 9.758651 TTTTGTAGGAAAAATTTCTTTAGAGCC 57.241 29.630 5.91 0.00 37.35 4.70
4818 7877 9.942526 AGGATTTTTGTAGAAATTCCATAGGAT 57.057 29.630 13.86 0.00 29.75 3.24
4819 7878 9.768215 AAGGATTTTTGTAGAAATTCCATAGGA 57.232 29.630 13.86 0.00 29.75 2.94
4834 7893 8.615211 GCTTTCTTTGATTTGAAGGATTTTTGT 58.385 29.630 0.00 0.00 0.00 2.83
4835 7894 8.071967 GGCTTTCTTTGATTTGAAGGATTTTTG 58.928 33.333 0.00 0.00 0.00 2.44
4836 7895 7.994911 AGGCTTTCTTTGATTTGAAGGATTTTT 59.005 29.630 0.00 0.00 0.00 1.94
4837 7896 7.512130 AGGCTTTCTTTGATTTGAAGGATTTT 58.488 30.769 0.00 0.00 0.00 1.82
4838 7897 7.071069 AGGCTTTCTTTGATTTGAAGGATTT 57.929 32.000 0.00 0.00 0.00 2.17
4839 7898 6.676990 AGGCTTTCTTTGATTTGAAGGATT 57.323 33.333 0.00 0.00 0.00 3.01
4840 7899 6.676990 AAGGCTTTCTTTGATTTGAAGGAT 57.323 33.333 0.00 0.00 29.99 3.24
4841 7900 7.781324 ATAAGGCTTTCTTTGATTTGAAGGA 57.219 32.000 4.45 0.00 36.93 3.36
4850 7909 8.889717 CGTTCCTAAATATAAGGCTTTCTTTGA 58.110 33.333 4.45 0.00 36.93 2.69
4851 7910 8.129211 CCGTTCCTAAATATAAGGCTTTCTTTG 58.871 37.037 4.45 0.00 36.93 2.77
4852 7911 8.050930 TCCGTTCCTAAATATAAGGCTTTCTTT 58.949 33.333 4.45 5.89 36.93 2.52
4853 7912 7.571025 TCCGTTCCTAAATATAAGGCTTTCTT 58.429 34.615 4.45 0.00 39.40 2.52
4854 7913 7.133133 TCCGTTCCTAAATATAAGGCTTTCT 57.867 36.000 4.45 0.00 33.84 2.52
4855 7914 6.427242 CCTCCGTTCCTAAATATAAGGCTTTC 59.573 42.308 4.45 0.00 33.84 2.62
4856 7915 6.296803 CCTCCGTTCCTAAATATAAGGCTTT 58.703 40.000 4.45 0.00 33.84 3.51
4857 7916 5.221864 CCCTCCGTTCCTAAATATAAGGCTT 60.222 44.000 4.58 4.58 33.84 4.35
4858 7917 4.286291 CCCTCCGTTCCTAAATATAAGGCT 59.714 45.833 0.01 0.00 33.84 4.58
4859 7918 4.285260 TCCCTCCGTTCCTAAATATAAGGC 59.715 45.833 0.01 0.00 33.84 4.35
4860 7919 5.543020 ACTCCCTCCGTTCCTAAATATAAGG 59.457 44.000 0.00 0.00 35.26 2.69
4861 7920 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4862 7921 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4863 7922 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4864 7923 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4865 7924 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4866 7925 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4867 7926 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4868 7927 3.372025 GGTAGTACTCCCTCCGTTCCTAA 60.372 52.174 0.00 0.00 0.00 2.69
4869 7928 2.173569 GGTAGTACTCCCTCCGTTCCTA 59.826 54.545 0.00 0.00 0.00 2.94
4870 7929 1.064091 GGTAGTACTCCCTCCGTTCCT 60.064 57.143 0.00 0.00 0.00 3.36
4871 7930 1.341383 TGGTAGTACTCCCTCCGTTCC 60.341 57.143 6.02 0.00 0.00 3.62
4872 7931 2.134789 TGGTAGTACTCCCTCCGTTC 57.865 55.000 6.02 0.00 0.00 3.95
4873 7932 2.385803 CATGGTAGTACTCCCTCCGTT 58.614 52.381 6.02 0.00 0.00 4.44
4874 7933 1.411216 CCATGGTAGTACTCCCTCCGT 60.411 57.143 2.57 1.33 0.00 4.69
4875 7934 1.329256 CCATGGTAGTACTCCCTCCG 58.671 60.000 2.57 0.00 0.00 4.63
4876 7935 1.062352 ACCCATGGTAGTACTCCCTCC 60.062 57.143 11.73 3.17 32.11 4.30
4877 7936 2.040178 CACCCATGGTAGTACTCCCTC 58.960 57.143 11.73 0.00 32.11 4.30
4878 7937 1.970226 GCACCCATGGTAGTACTCCCT 60.970 57.143 11.73 0.00 32.11 4.20
4879 7938 0.468648 GCACCCATGGTAGTACTCCC 59.531 60.000 11.73 0.00 32.11 4.30
4880 7939 1.200519 TGCACCCATGGTAGTACTCC 58.799 55.000 11.73 1.20 32.11 3.85
4881 7940 2.838736 CATGCACCCATGGTAGTACTC 58.161 52.381 11.73 0.00 44.07 2.59
4903 7962 5.574055 TGATCGATACAGGTAAACGTCAAAC 59.426 40.000 0.00 0.00 0.00 2.93
4908 7967 3.444742 TGGTGATCGATACAGGTAAACGT 59.555 43.478 0.00 0.00 0.00 3.99
4916 7975 4.053983 CAGAACCATGGTGATCGATACAG 58.946 47.826 20.60 0.00 0.00 2.74
4923 7982 5.649782 AACATTTCAGAACCATGGTGATC 57.350 39.130 20.60 13.64 0.00 2.92
4926 7985 4.947645 ACAAACATTTCAGAACCATGGTG 58.052 39.130 20.60 6.29 0.00 4.17
4941 8000 4.949121 AGAGTAGAGGGAGGTACAAACAT 58.051 43.478 0.00 0.00 0.00 2.71
4942 8001 4.399483 AGAGTAGAGGGAGGTACAAACA 57.601 45.455 0.00 0.00 0.00 2.83
4943 8002 4.081586 CCAAGAGTAGAGGGAGGTACAAAC 60.082 50.000 0.00 0.00 0.00 2.93
4947 8006 3.385314 ACCAAGAGTAGAGGGAGGTAC 57.615 52.381 0.00 0.00 0.00 3.34
4949 8008 2.158143 ACAACCAAGAGTAGAGGGAGGT 60.158 50.000 0.00 0.00 0.00 3.85
4950 8009 2.234908 CACAACCAAGAGTAGAGGGAGG 59.765 54.545 0.00 0.00 0.00 4.30
4957 8181 2.300152 TCTCCTGCACAACCAAGAGTAG 59.700 50.000 0.00 0.00 0.00 2.57
4962 8187 1.239968 GGCTCTCCTGCACAACCAAG 61.240 60.000 0.00 0.00 34.04 3.61
5072 8297 1.199327 CAGTCGCTCTTCGTAGGACAA 59.801 52.381 1.18 0.00 39.67 3.18
5081 8306 3.122613 CACAATTGAGACAGTCGCTCTTC 59.877 47.826 13.59 0.00 33.57 2.87
5124 8357 5.843421 AGTATCTGCAAGGGAGATAGATTGT 59.157 40.000 7.58 0.00 33.91 2.71
5129 8362 6.943146 TGTAGTAGTATCTGCAAGGGAGATAG 59.057 42.308 7.58 0.00 33.91 2.08
5130 8363 6.849151 TGTAGTAGTATCTGCAAGGGAGATA 58.151 40.000 3.69 3.69 32.32 1.98
5131 8364 5.706447 TGTAGTAGTATCTGCAAGGGAGAT 58.294 41.667 5.58 5.58 34.47 2.75
5174 8407 4.141287 TGCCCCATATAACTTTTCCATCG 58.859 43.478 0.00 0.00 0.00 3.84
5236 8469 1.901591 AACAACCCTCTGCAGTGATG 58.098 50.000 17.19 14.01 0.00 3.07
5392 8668 2.936202 ACCAGGGCAGCATGTTATTAG 58.064 47.619 0.00 0.00 39.31 1.73
5393 8669 3.380471 AACCAGGGCAGCATGTTATTA 57.620 42.857 0.00 0.00 39.31 0.98
5395 8671 1.826720 CAAACCAGGGCAGCATGTTAT 59.173 47.619 0.00 0.00 39.31 1.89
5571 8856 1.446792 CTCGACCTGCTGCGTGAAT 60.447 57.895 0.00 0.00 0.00 2.57
5680 8974 6.984474 CCAAGTTATTACCAGAGAGCGAATTA 59.016 38.462 0.00 0.00 0.00 1.40
5686 8980 5.755861 GTCATCCAAGTTATTACCAGAGAGC 59.244 44.000 0.00 0.00 0.00 4.09
5694 9155 7.168302 CGATCACAGAGTCATCCAAGTTATTAC 59.832 40.741 0.00 0.00 0.00 1.89
5895 9487 1.799181 CGAGGTTAGCTGTGACCATCG 60.799 57.143 15.41 15.50 38.42 3.84
5902 9494 4.996976 AGCACGAGGTTAGCTGTG 57.003 55.556 0.00 0.00 37.20 3.66
5905 9497 2.982130 CCCAGCACGAGGTTAGCT 59.018 61.111 0.00 0.00 39.63 3.32
5906 9498 2.820037 GCCCAGCACGAGGTTAGC 60.820 66.667 0.00 0.00 0.00 3.09
5907 9499 2.509336 CGCCCAGCACGAGGTTAG 60.509 66.667 0.00 0.00 0.00 2.34
6004 9599 2.288886 GGTCGAGAAACCTGTACTGCTT 60.289 50.000 0.00 0.00 36.32 3.91
6208 9808 3.379445 CCGCTCGTACTGGTGGGT 61.379 66.667 6.63 0.00 0.00 4.51
6209 9809 3.066190 TCCGCTCGTACTGGTGGG 61.066 66.667 12.43 0.00 34.24 4.61
6480 10088 3.105959 TCATGTGGTCAGAGATCAGGA 57.894 47.619 0.00 0.00 0.00 3.86
6481 10089 3.729966 CATCATGTGGTCAGAGATCAGG 58.270 50.000 0.00 0.00 0.00 3.86
6485 10093 2.770232 TCTGCATCATGTGGTCAGAGAT 59.230 45.455 0.00 0.00 31.07 2.75
6486 10094 2.181975 TCTGCATCATGTGGTCAGAGA 58.818 47.619 0.00 0.00 31.07 3.10
6658 10279 5.178797 CCACCTTGACAGTTAATGAGTAGG 58.821 45.833 0.00 0.00 32.75 3.18
6680 10301 5.063880 ACATCTTCTGGTGTTCTTTGTACC 58.936 41.667 0.00 0.00 35.05 3.34
6784 10405 5.220434 GCATCTATCATTGCTATCTTGAGCG 60.220 44.000 0.00 0.00 45.99 5.03
6812 10433 6.852853 GCATCATATACATCTTTTGGTGTTCG 59.147 38.462 0.00 0.00 0.00 3.95
6951 10586 0.318955 CTTTGCCTTTCACCTTGCCG 60.319 55.000 0.00 0.00 0.00 5.69
6996 10631 4.159135 CCTACTTCGTCAAGGCTAAAGGTA 59.841 45.833 0.00 0.00 33.37 3.08
7085 11041 0.250295 CAACCACCACGTCCATGACT 60.250 55.000 0.00 0.00 0.00 3.41
7088 11044 1.565156 CGACAACCACCACGTCCATG 61.565 60.000 0.00 0.00 0.00 3.66
7157 11123 2.025887 ACCTCCACCAACCATTGATCTC 60.026 50.000 0.00 0.00 0.00 2.75
7194 11160 3.552890 GGCCAACAAACATTCAGAGGAAC 60.553 47.826 0.00 0.00 35.46 3.62
7201 11168 1.751351 TCGTTGGCCAACAAACATTCA 59.249 42.857 39.91 15.55 41.58 2.57
7268 11235 3.256558 CGATTGTGTGCTCTTCATCTCA 58.743 45.455 0.00 0.00 0.00 3.27
7279 11246 2.941453 TCTAGACTCCGATTGTGTGC 57.059 50.000 0.00 0.00 0.00 4.57
7296 11264 5.877012 CGCTTTAGCCATACCATTCATATCT 59.123 40.000 0.00 0.00 37.91 1.98
7307 11275 2.745281 TGTTTCACCGCTTTAGCCATAC 59.255 45.455 0.00 0.00 37.91 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.