Multiple sequence alignment - TraesCS5A01G285600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G285600 chr5A 100.000 5619 0 0 1 5619 493608728 493603110 0.000000e+00 10377.0
1 TraesCS5A01G285600 chr5D 87.518 3461 221 79 1 3325 390364666 390361281 0.000000e+00 3803.0
2 TraesCS5A01G285600 chr5D 93.346 1037 44 13 4009 5029 390360676 390359649 0.000000e+00 1509.0
3 TraesCS5A01G285600 chr5D 91.297 563 39 5 3387 3948 390361254 390360701 0.000000e+00 760.0
4 TraesCS5A01G285600 chr5D 96.284 296 9 1 5013 5306 390359705 390359410 8.460000e-133 484.0
5 TraesCS5A01G285600 chr5B 86.747 2656 202 64 770 3325 470406297 470403692 0.000000e+00 2817.0
6 TraesCS5A01G285600 chr5B 93.079 968 32 10 4052 5016 470403045 470402110 0.000000e+00 1384.0
7 TraesCS5A01G285600 chr5B 91.176 578 44 4 3372 3948 470403680 470403109 0.000000e+00 778.0
8 TraesCS5A01G285600 chr5B 92.925 523 20 5 5112 5619 470401837 470401317 0.000000e+00 745.0
9 TraesCS5A01G285600 chr5B 82.121 330 43 5 5304 5619 474974177 474974504 9.280000e-68 268.0
10 TraesCS5A01G285600 chr2A 93.598 328 7 4 5304 5619 689625175 689625500 1.420000e-130 477.0
11 TraesCS5A01G285600 chr2A 79.570 93 17 2 5128 5218 706767516 706767424 1.310000e-06 65.8
12 TraesCS5A01G285600 chr1A 91.489 329 13 3 5304 5619 60361497 60361171 6.680000e-119 438.0
13 TraesCS5A01G285600 chr1A 87.121 264 25 7 5298 5558 36597675 36597418 1.980000e-74 291.0
14 TraesCS5A01G285600 chr1A 83.386 319 36 7 5315 5619 104392239 104392554 4.290000e-71 279.0
15 TraesCS5A01G285600 chr1A 84.459 148 10 7 208 347 548739170 548739028 3.530000e-27 134.0
16 TraesCS5A01G285600 chr1A 81.319 91 17 0 5029 5119 124822 124732 2.170000e-09 75.0
17 TraesCS5A01G285600 chr1A 80.220 91 18 0 5029 5119 186636 186546 1.010000e-07 69.4
18 TraesCS5A01G285600 chr1A 81.013 79 15 0 5041 5119 341125 341047 4.700000e-06 63.9
19 TraesCS5A01G285600 chr1D 89.264 326 18 6 5304 5617 456595 456915 5.280000e-105 392.0
20 TraesCS5A01G285600 chr1D 87.273 330 20 9 5304 5619 321505878 321506199 1.930000e-94 357.0
21 TraesCS5A01G285600 chr1D 88.430 121 10 3 220 339 119295350 119295233 5.870000e-30 143.0
22 TraesCS5A01G285600 chr3A 83.988 331 33 8 5304 5619 1917927 1918252 3.290000e-77 300.0
23 TraesCS5A01G285600 chr3A 89.431 123 6 4 227 344 130848168 130848288 1.260000e-31 148.0
24 TraesCS5A01G285600 chr2D 86.842 266 27 7 5290 5554 628165646 628165388 1.980000e-74 291.0
25 TraesCS5A01G285600 chr2D 82.371 329 41 7 5304 5619 342554061 342554385 2.580000e-68 270.0
26 TraesCS5A01G285600 chr2D 81.899 337 43 7 5297 5619 49888118 49887786 9.280000e-68 268.0
27 TraesCS5A01G285600 chr2D 86.316 95 12 1 574 668 78307343 78307436 9.960000e-18 102.0
28 TraesCS5A01G285600 chr7D 83.384 331 36 7 5304 5619 193990667 193990993 7.120000e-74 289.0
29 TraesCS5A01G285600 chr4A 83.284 335 31 11 5304 5619 590350028 590349700 9.210000e-73 285.0
30 TraesCS5A01G285600 chr4A 89.256 121 7 2 220 336 524708048 524708166 4.540000e-31 147.0
31 TraesCS5A01G285600 chr4A 81.915 94 17 0 574 667 419678677 419678584 4.670000e-11 80.5
32 TraesCS5A01G285600 chr4A 84.286 70 11 0 597 666 38727640 38727571 1.010000e-07 69.4
33 TraesCS5A01G285600 chr2B 91.597 119 8 1 220 338 353764723 353764839 4.500000e-36 163.0
34 TraesCS5A01G285600 chr2B 86.667 135 8 6 220 347 457367593 457367462 2.110000e-29 141.0
35 TraesCS5A01G285600 chr3B 90.000 120 10 1 220 339 764363020 764362903 2.710000e-33 154.0
36 TraesCS5A01G285600 chr1B 88.430 121 8 5 220 340 417975169 417975055 2.110000e-29 141.0
37 TraesCS5A01G285600 chr1B 88.542 96 11 0 573 668 669773378 669773283 3.560000e-22 117.0
38 TraesCS5A01G285600 chr1B 82.222 90 16 0 5030 5119 80734906 80734995 1.680000e-10 78.7
39 TraesCS5A01G285600 chr4D 83.721 129 17 3 569 696 303051890 303051765 9.890000e-23 119.0
40 TraesCS5A01G285600 chr3D 87.097 93 12 0 574 666 137129356 137129264 7.700000e-19 106.0
41 TraesCS5A01G285600 chr6A 92.857 56 3 1 568 622 30200487 30200542 4.670000e-11 80.5
42 TraesCS5A01G285600 chrUn 80.220 91 16 2 5030 5119 406003211 406003300 3.630000e-07 67.6
43 TraesCS5A01G285600 chr6B 76.613 124 26 3 573 695 634912646 634912767 1.310000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G285600 chr5A 493603110 493608728 5618 True 10377 10377 100.00000 1 5619 1 chr5A.!!$R1 5618
1 TraesCS5A01G285600 chr5D 390359410 390364666 5256 True 1639 3803 92.11125 1 5306 4 chr5D.!!$R1 5305
2 TraesCS5A01G285600 chr5B 470401317 470406297 4980 True 1431 2817 90.98175 770 5619 4 chr5B.!!$R1 4849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 35 0.180171 CTTGATACCCCCGCACATCA 59.820 55.0 0.00 0.0 0.00 3.07 F
1556 1593 0.249073 CAGCGTGCTTCCTATAGCGT 60.249 55.0 0.00 0.0 44.18 5.07 F
1905 1944 0.035820 GGGATTGGTCTGCCGTAACA 60.036 55.0 0.00 0.0 37.67 2.41 F
2163 2242 0.038892 CACCCTTGCTGTTGTGATGC 60.039 55.0 0.00 0.0 0.00 3.91 F
3400 3539 0.249953 TTGCCTGGCAATGCAACAAG 60.250 50.0 29.24 0.0 43.99 3.16 F
4230 4369 0.249676 GTTTCCCTCTCTCGGTTCCC 59.750 60.0 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1850 0.250901 ACTTTCTGAATGCCGCCAGT 60.251 50.0 3.45 0.0 0.00 4.00 R
3355 3494 0.032813 TACTCCCTACCCGTCCCAAG 60.033 60.0 0.00 0.0 0.00 3.61 R
3356 3495 0.324645 GTACTCCCTACCCGTCCCAA 60.325 60.0 0.00 0.0 0.00 4.12 R
3449 3588 0.804989 GCAGTGCATTCCAGGTGTAC 59.195 55.0 11.09 0.0 33.15 2.90 R
4339 4478 0.248336 CGATGTACTCGCGCCTTGTA 60.248 55.0 0.00 0.0 41.14 2.41 R
5313 5654 0.463295 AGATGCCCATGCGTTCAGAG 60.463 55.0 0.00 0.0 41.78 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 0.180406 ACTTGATACCCCCGCACATC 59.820 55.000 0.00 0.00 0.00 3.06
32 35 0.180171 CTTGATACCCCCGCACATCA 59.820 55.000 0.00 0.00 0.00 3.07
33 36 0.843309 TTGATACCCCCGCACATCAT 59.157 50.000 0.00 0.00 0.00 2.45
206 220 7.749126 CGGTTAAAAGGATGTCATTTCTAACAC 59.251 37.037 16.85 10.84 0.00 3.32
207 221 8.573035 GGTTAAAAGGATGTCATTTCTAACACA 58.427 33.333 16.85 0.00 0.00 3.72
285 299 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
287 301 3.686726 AGATTCACTCATTTTGCTCCGTC 59.313 43.478 0.00 0.00 0.00 4.79
288 302 2.542020 TCACTCATTTTGCTCCGTCA 57.458 45.000 0.00 0.00 0.00 4.35
289 303 3.057969 TCACTCATTTTGCTCCGTCAT 57.942 42.857 0.00 0.00 0.00 3.06
291 305 3.820467 TCACTCATTTTGCTCCGTCATTT 59.180 39.130 0.00 0.00 0.00 2.32
300 321 4.159377 TGCTCCGTCATTTGTTGAAATC 57.841 40.909 0.00 0.00 35.70 2.17
310 331 7.959651 CGTCATTTGTTGAAATCTCTAGAAAGG 59.040 37.037 0.00 0.00 35.70 3.11
347 368 4.519730 ACGAAGAGAGTACATAGGTATGCC 59.480 45.833 0.00 0.00 37.19 4.40
360 381 2.244769 AGGTATGCCCCAAGTGCTTAAT 59.755 45.455 0.00 0.00 34.57 1.40
431 452 3.555527 ATGACTCACATCCATGGACTG 57.444 47.619 18.99 18.07 33.46 3.51
437 458 5.618236 ACTCACATCCATGGACTGATTATG 58.382 41.667 18.99 12.23 0.00 1.90
452 473 4.525996 TGATTATGTGGCAGCTACATGTT 58.474 39.130 29.42 18.33 39.03 2.71
455 476 6.772233 TGATTATGTGGCAGCTACATGTTTAT 59.228 34.615 29.42 18.14 39.03 1.40
457 478 2.423185 TGTGGCAGCTACATGTTTATGC 59.577 45.455 7.65 11.74 37.85 3.14
458 479 2.423185 GTGGCAGCTACATGTTTATGCA 59.577 45.455 22.42 11.36 37.85 3.96
460 481 3.129113 TGGCAGCTACATGTTTATGCAAG 59.871 43.478 22.42 7.86 37.85 4.01
520 548 9.810231 GACATGGTTGCATTGTTTTAAAAATAG 57.190 29.630 1.31 0.00 0.00 1.73
575 603 9.125026 AGGATAGTATTGGCTTACATTTTTCAG 57.875 33.333 1.97 0.00 0.00 3.02
586 614 8.884726 GGCTTACATTTTTCAGTTTTGGTAAAA 58.115 29.630 0.00 0.00 0.00 1.52
629 657 6.749216 AATATTGTACATCTAAGTCGTGCG 57.251 37.500 0.00 0.00 0.00 5.34
638 666 1.258982 CTAAGTCGTGCGCCATTGATC 59.741 52.381 4.18 0.00 0.00 2.92
663 691 3.259064 CGTGAAGATTCGTGTGGGTATT 58.741 45.455 0.00 0.00 0.00 1.89
699 728 5.794687 TTAAGTCATTAAGATGTGCCGTG 57.205 39.130 0.00 0.00 34.77 4.94
738 768 7.619512 AAGGAAGGAGAAACTATCGGATTAT 57.380 36.000 0.00 0.00 0.00 1.28
741 771 9.327731 AGGAAGGAGAAACTATCGGATTATATT 57.672 33.333 0.00 0.00 0.00 1.28
765 795 8.625023 TTATAACACAAAACGAAACGTATTCG 57.375 30.769 22.43 22.43 46.36 3.34
766 796 4.775440 ACACAAAACGAAACGTATTCGA 57.225 36.364 27.46 0.00 43.97 3.71
767 797 4.754332 ACACAAAACGAAACGTATTCGAG 58.246 39.130 27.46 19.04 43.97 4.04
768 798 4.503734 ACACAAAACGAAACGTATTCGAGA 59.496 37.500 27.46 0.00 43.97 4.04
769 799 5.005586 ACACAAAACGAAACGTATTCGAGAA 59.994 36.000 27.46 0.00 43.97 2.87
770 800 5.897518 CACAAAACGAAACGTATTCGAGAAA 59.102 36.000 27.46 0.00 43.97 2.52
771 801 6.408611 CACAAAACGAAACGTATTCGAGAAAA 59.591 34.615 27.46 0.00 43.97 2.29
772 802 6.960431 ACAAAACGAAACGTATTCGAGAAAAA 59.040 30.769 27.46 0.00 43.97 1.94
773 803 7.163032 ACAAAACGAAACGTATTCGAGAAAAAG 59.837 33.333 27.46 16.73 43.97 2.27
827 857 2.032620 TCAGACCCGATAGAAAGCCTC 58.967 52.381 0.00 0.00 39.76 4.70
851 881 2.412847 GCTTGTCGCGCATAAAGAAAGT 60.413 45.455 8.75 0.00 0.00 2.66
978 1008 1.739562 CACTGCTCCACTTCGCCTC 60.740 63.158 0.00 0.00 0.00 4.70
981 1011 2.177594 CTGCTCCACTTCGCCTCCTT 62.178 60.000 0.00 0.00 0.00 3.36
1038 1069 3.785859 CAAGCAGCCCGCCCTCTA 61.786 66.667 0.00 0.00 44.04 2.43
1110 1141 3.354472 TAAGCGCCCTCCCTCTCGA 62.354 63.158 2.29 0.00 0.00 4.04
1170 1206 0.808755 CATAACGAGGGCCGCTTTTT 59.191 50.000 4.03 0.00 43.32 1.94
1303 1339 2.857152 CAAGATCTGCGAGCTGTAAGTC 59.143 50.000 0.00 0.00 35.30 3.01
1353 1389 2.732619 CGCCTGGGGACTAGGGTTC 61.733 68.421 4.46 0.00 35.80 3.62
1385 1421 2.108976 CGTGTGGCTCTGTGGTGT 59.891 61.111 0.00 0.00 0.00 4.16
1413 1449 3.555966 GATTTGGATACCTTGGTGGAGG 58.444 50.000 2.03 0.00 42.75 4.30
1475 1511 2.266055 GTGCTTGGAGGTCTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
1548 1585 2.743928 CTGTCCCAGCGTGCTTCC 60.744 66.667 0.00 0.00 0.00 3.46
1549 1586 3.241530 TGTCCCAGCGTGCTTCCT 61.242 61.111 0.00 0.00 0.00 3.36
1550 1587 1.888436 CTGTCCCAGCGTGCTTCCTA 61.888 60.000 0.00 0.00 0.00 2.94
1551 1588 1.264749 TGTCCCAGCGTGCTTCCTAT 61.265 55.000 0.00 0.00 0.00 2.57
1552 1589 0.750850 GTCCCAGCGTGCTTCCTATA 59.249 55.000 0.00 0.00 0.00 1.31
1553 1590 1.040646 TCCCAGCGTGCTTCCTATAG 58.959 55.000 0.00 0.00 0.00 1.31
1554 1591 0.601311 CCCAGCGTGCTTCCTATAGC 60.601 60.000 0.00 0.00 41.59 2.97
1555 1592 0.941463 CCAGCGTGCTTCCTATAGCG 60.941 60.000 0.00 0.00 44.18 4.26
1556 1593 0.249073 CAGCGTGCTTCCTATAGCGT 60.249 55.000 0.00 0.00 44.18 5.07
1557 1594 0.460311 AGCGTGCTTCCTATAGCGTT 59.540 50.000 0.00 0.00 44.18 4.84
1558 1595 1.679680 AGCGTGCTTCCTATAGCGTTA 59.320 47.619 0.00 0.00 44.18 3.18
1559 1596 2.296471 AGCGTGCTTCCTATAGCGTTAT 59.704 45.455 0.00 0.00 44.18 1.89
1560 1597 3.504906 AGCGTGCTTCCTATAGCGTTATA 59.495 43.478 0.00 0.00 44.18 0.98
1561 1598 3.852536 GCGTGCTTCCTATAGCGTTATAG 59.147 47.826 16.88 16.88 44.18 1.31
1580 1617 1.135689 AGTTTGATGCGATTTGCCGAC 60.136 47.619 0.00 0.00 45.60 4.79
1581 1618 0.877743 TTTGATGCGATTTGCCGACA 59.122 45.000 0.00 0.00 45.60 4.35
1601 1638 5.163903 CGACATCTATGGAGAGACGACATAG 60.164 48.000 0.00 0.00 43.28 2.23
1722 1759 1.279271 AGAGGATTGGTTTGGGAGACG 59.721 52.381 0.00 0.00 0.00 4.18
1797 1835 9.807649 AACAGATAAAATTTGTAAGATGCCATC 57.192 29.630 0.00 0.00 0.00 3.51
1812 1850 4.502105 TGCCATCAGGTTTGCTTCTATA 57.498 40.909 0.00 0.00 37.19 1.31
1818 1856 2.609459 CAGGTTTGCTTCTATACTGGCG 59.391 50.000 0.00 0.00 0.00 5.69
1819 1857 1.940613 GGTTTGCTTCTATACTGGCGG 59.059 52.381 0.00 0.00 0.00 6.13
1820 1858 1.330829 GTTTGCTTCTATACTGGCGGC 59.669 52.381 0.00 0.00 0.00 6.53
1832 1870 0.169672 CTGGCGGCATTCAGAAAGTG 59.830 55.000 13.85 0.00 33.11 3.16
1837 1875 2.159653 GCGGCATTCAGAAAGTGTACAG 60.160 50.000 0.00 0.00 0.00 2.74
1841 1879 4.083802 GGCATTCAGAAAGTGTACAGTGAC 60.084 45.833 3.39 1.81 0.00 3.67
1845 1883 4.945246 TCAGAAAGTGTACAGTGACCTTC 58.055 43.478 3.39 4.46 0.00 3.46
1850 1888 5.552870 AAGTGTACAGTGACCTTCATCTT 57.447 39.130 3.39 0.00 0.00 2.40
1851 1889 4.887748 AGTGTACAGTGACCTTCATCTTG 58.112 43.478 1.37 0.00 0.00 3.02
1854 1892 5.758296 GTGTACAGTGACCTTCATCTTGAAA 59.242 40.000 0.00 0.00 35.73 2.69
1856 1894 6.998074 TGTACAGTGACCTTCATCTTGAAATT 59.002 34.615 0.00 0.00 35.73 1.82
1857 1895 6.566197 ACAGTGACCTTCATCTTGAAATTC 57.434 37.500 0.00 0.00 35.73 2.17
1860 1898 7.040823 ACAGTGACCTTCATCTTGAAATTCTTC 60.041 37.037 0.00 0.00 35.73 2.87
1861 1899 7.174599 CAGTGACCTTCATCTTGAAATTCTTCT 59.825 37.037 0.00 0.00 35.73 2.85
1862 1900 8.378565 AGTGACCTTCATCTTGAAATTCTTCTA 58.621 33.333 0.00 0.00 35.73 2.10
1863 1901 9.171877 GTGACCTTCATCTTGAAATTCTTCTAT 57.828 33.333 0.00 0.00 35.73 1.98
1888 1927 2.026915 TCCATGATGTGTGTCTTCTGGG 60.027 50.000 0.00 0.00 0.00 4.45
1898 1937 1.003580 TGTCTTCTGGGATTGGTCTGC 59.996 52.381 0.00 0.00 0.00 4.26
1905 1944 0.035820 GGGATTGGTCTGCCGTAACA 60.036 55.000 0.00 0.00 37.67 2.41
1907 1946 1.670811 GGATTGGTCTGCCGTAACATG 59.329 52.381 0.00 0.00 37.67 3.21
1908 1947 2.627945 GATTGGTCTGCCGTAACATGA 58.372 47.619 0.00 0.00 37.67 3.07
1909 1948 1.803334 TTGGTCTGCCGTAACATGAC 58.197 50.000 0.00 0.00 37.67 3.06
1910 1949 0.682292 TGGTCTGCCGTAACATGACA 59.318 50.000 0.00 0.00 37.67 3.58
1911 1950 1.070914 TGGTCTGCCGTAACATGACAA 59.929 47.619 0.00 0.00 37.67 3.18
1912 1951 2.147958 GGTCTGCCGTAACATGACAAA 58.852 47.619 0.00 0.00 0.00 2.83
1914 1953 3.364964 GGTCTGCCGTAACATGACAAAAG 60.365 47.826 0.00 0.00 0.00 2.27
1915 1954 3.250040 GTCTGCCGTAACATGACAAAAGT 59.750 43.478 0.00 0.00 0.00 2.66
1916 1955 4.449743 GTCTGCCGTAACATGACAAAAGTA 59.550 41.667 0.00 0.00 0.00 2.24
1917 1956 5.049954 GTCTGCCGTAACATGACAAAAGTAA 60.050 40.000 0.00 0.00 0.00 2.24
1937 1988 9.981114 AAAGTAATTGGTTCTATTTTGGTTCTG 57.019 29.630 0.00 0.00 0.00 3.02
1942 1993 6.195600 TGGTTCTATTTTGGTTCTGTAGGT 57.804 37.500 0.00 0.00 0.00 3.08
1946 1997 7.662669 GGTTCTATTTTGGTTCTGTAGGTGTTA 59.337 37.037 0.00 0.00 0.00 2.41
1957 2008 7.362315 GGTTCTGTAGGTGTTAAAACTGTTTGT 60.362 37.037 6.53 0.48 0.00 2.83
1968 2019 8.018520 TGTTAAAACTGTTTGTTATGGATAGCG 58.981 33.333 6.53 0.00 38.03 4.26
1971 2022 3.054655 ACTGTTTGTTATGGATAGCGGGT 60.055 43.478 0.00 0.00 0.00 5.28
1973 2024 5.100344 TGTTTGTTATGGATAGCGGGTAA 57.900 39.130 0.00 0.00 0.00 2.85
1975 2026 6.123651 TGTTTGTTATGGATAGCGGGTAATT 58.876 36.000 0.00 0.00 0.00 1.40
1979 2030 7.247456 TGTTATGGATAGCGGGTAATTGATA 57.753 36.000 0.00 0.00 0.00 2.15
1983 2034 9.826574 TTATGGATAGCGGGTAATTGATAATAC 57.173 33.333 0.00 0.00 0.00 1.89
1989 2040 6.231211 AGCGGGTAATTGATAATACCTCTTG 58.769 40.000 2.34 0.00 33.33 3.02
2008 2059 4.658435 TCTTGCCTATAGGTTTGCTCCATA 59.342 41.667 20.10 0.00 37.57 2.74
2012 2063 4.202367 GCCTATAGGTTTGCTCCATACTGT 60.202 45.833 20.10 0.00 37.57 3.55
2032 2084 7.703298 ACTGTTGTTGATGTGAAAATTGATG 57.297 32.000 0.00 0.00 0.00 3.07
2034 2086 7.436080 ACTGTTGTTGATGTGAAAATTGATGAC 59.564 33.333 0.00 0.00 0.00 3.06
2042 2094 7.711772 TGATGTGAAAATTGATGACAAGCTTTT 59.288 29.630 0.00 0.00 39.46 2.27
2058 2110 2.359848 GCTTTTGGGTTTACACCGTCTT 59.640 45.455 0.00 0.00 45.39 3.01
2069 2121 1.612463 ACACCGTCTTGAGTAGGACAC 59.388 52.381 0.00 0.00 33.19 3.67
2076 2128 5.394224 CCGTCTTGAGTAGGACACATAACAT 60.394 44.000 0.00 0.00 33.19 2.71
2079 2131 7.921214 CGTCTTGAGTAGGACACATAACATAAT 59.079 37.037 0.00 0.00 33.19 1.28
2089 2141 9.006839 AGGACACATAACATAATATGATGCAAG 57.993 33.333 7.33 0.00 36.87 4.01
2090 2142 7.752239 GGACACATAACATAATATGATGCAAGC 59.248 37.037 7.33 0.00 36.87 4.01
2091 2143 7.300320 ACACATAACATAATATGATGCAAGCG 58.700 34.615 7.33 0.00 36.87 4.68
2096 2152 6.174451 ACATAATATGATGCAAGCGATGAC 57.826 37.500 7.33 0.00 0.00 3.06
2100 2156 2.507339 TGATGCAAGCGATGACGATA 57.493 45.000 0.00 0.00 42.66 2.92
2105 2161 2.935849 TGCAAGCGATGACGATACAATT 59.064 40.909 0.00 0.00 42.66 2.32
2109 2165 5.107491 GCAAGCGATGACGATACAATTGATA 60.107 40.000 13.59 1.30 42.66 2.15
2126 2205 7.093640 ACAATTGATATCTTCATTGGTTGTGCT 60.094 33.333 13.59 3.06 33.34 4.40
2146 2225 7.757526 TGTGCTGTAATTATGTTCCAATACAC 58.242 34.615 0.00 0.00 0.00 2.90
2154 2233 2.513753 TGTTCCAATACACCCTTGCTG 58.486 47.619 0.00 0.00 0.00 4.41
2163 2242 0.038892 CACCCTTGCTGTTGTGATGC 60.039 55.000 0.00 0.00 0.00 3.91
2189 2268 2.620242 GCATTTGGTTATGCCCACAAG 58.380 47.619 0.00 0.00 44.01 3.16
2195 2274 0.683179 GTTATGCCCACAAGTCCCCC 60.683 60.000 0.00 0.00 0.00 5.40
2201 2280 1.728323 CCCACAAGTCCCCCAATTTT 58.272 50.000 0.00 0.00 0.00 1.82
2202 2281 2.054021 CCCACAAGTCCCCCAATTTTT 58.946 47.619 0.00 0.00 0.00 1.94
2203 2282 2.224499 CCCACAAGTCCCCCAATTTTTG 60.224 50.000 0.00 0.00 0.00 2.44
2204 2283 2.493035 CACAAGTCCCCCAATTTTTGC 58.507 47.619 0.00 0.00 0.00 3.68
2208 2287 4.410555 ACAAGTCCCCCAATTTTTGCTTTA 59.589 37.500 0.00 0.00 0.00 1.85
2209 2288 4.890158 AGTCCCCCAATTTTTGCTTTAG 57.110 40.909 0.00 0.00 0.00 1.85
2228 2312 6.486253 TTTAGTAGAGCATGTTCAGCAAAG 57.514 37.500 12.41 0.00 0.00 2.77
2237 2321 4.328169 GCATGTTCAGCAAAGCTATTTTCC 59.672 41.667 0.00 0.00 36.40 3.13
2250 2334 9.807649 CAAAGCTATTTTCCTGCTTAATGTTAT 57.192 29.630 0.00 0.00 44.94 1.89
2336 2421 9.884636 TGCAGTAATATCTTGTTGTATTAGTGT 57.115 29.630 15.70 0.00 41.67 3.55
2350 2435 6.651308 TGTATTAGTGTAAGCAAACGTTGTG 58.349 36.000 0.00 3.81 0.00 3.33
2359 2444 2.488545 AGCAAACGTTGTGGTGTTGTAA 59.511 40.909 0.00 0.00 0.00 2.41
2376 2461 4.545208 TGTAAGCACACATTAGCAGGTA 57.455 40.909 0.00 0.00 0.00 3.08
2377 2462 5.097742 TGTAAGCACACATTAGCAGGTAT 57.902 39.130 0.00 0.00 0.00 2.73
2404 2489 9.467258 AAGTTATTATCATGCAATTGGATTTCG 57.533 29.630 10.07 0.00 0.00 3.46
2406 2491 9.248291 GTTATTATCATGCAATTGGATTTCGTT 57.752 29.630 10.07 0.00 0.00 3.85
2407 2492 7.935338 ATTATCATGCAATTGGATTTCGTTC 57.065 32.000 10.07 0.00 0.00 3.95
2420 2519 7.033530 TGGATTTCGTTCTTGTTAACAATGT 57.966 32.000 20.83 2.36 35.02 2.71
2441 2540 4.192317 GTCTCTTTATCCCGCTTTGTGAT 58.808 43.478 0.00 0.00 0.00 3.06
2442 2541 4.034510 GTCTCTTTATCCCGCTTTGTGATG 59.965 45.833 0.00 0.00 0.00 3.07
2450 2549 1.159285 CGCTTTGTGATGAAGCTGGA 58.841 50.000 7.18 0.00 45.58 3.86
2453 2552 3.562973 CGCTTTGTGATGAAGCTGGATAT 59.437 43.478 7.18 0.00 45.58 1.63
2458 2557 5.378230 TGTGATGAAGCTGGATATTTCCT 57.622 39.130 3.72 0.00 43.07 3.36
2459 2558 6.499106 TGTGATGAAGCTGGATATTTCCTA 57.501 37.500 3.72 0.00 43.07 2.94
2472 2571 9.342308 CTGGATATTTCCTAAGCTGACAATTTA 57.658 33.333 3.72 0.00 43.07 1.40
2512 2611 1.836802 TATGTGGCTCATTGCTTGCA 58.163 45.000 7.43 0.00 42.39 4.08
2648 2755 6.418057 AAGTTGCAAAACCTCATTTATCCA 57.582 33.333 0.00 0.00 0.00 3.41
2649 2756 5.783111 AGTTGCAAAACCTCATTTATCCAC 58.217 37.500 0.00 0.00 0.00 4.02
2652 2759 4.165779 GCAAAACCTCATTTATCCACGTG 58.834 43.478 9.08 9.08 0.00 4.49
2667 2774 6.599356 ATCCACGTGTTGCCTATATACATA 57.401 37.500 15.65 0.00 0.00 2.29
2681 2788 8.094548 GCCTATATACATACATTCACACCTTCA 58.905 37.037 0.00 0.00 0.00 3.02
2705 2812 6.529125 CAGTGTTGATACCAAATGATTCTTGC 59.471 38.462 0.00 0.00 33.49 4.01
2710 2817 5.657745 TGATACCAAATGATTCTTGCATGGT 59.342 36.000 7.87 7.87 0.00 3.55
2711 2818 4.895668 ACCAAATGATTCTTGCATGGTT 57.104 36.364 0.00 0.00 0.00 3.67
2712 2819 5.231702 ACCAAATGATTCTTGCATGGTTT 57.768 34.783 0.00 0.00 0.00 3.27
2713 2820 5.240121 ACCAAATGATTCTTGCATGGTTTC 58.760 37.500 0.00 0.00 0.00 2.78
2714 2821 5.221682 ACCAAATGATTCTTGCATGGTTTCA 60.222 36.000 0.00 1.89 0.00 2.69
2728 2835 4.717233 TGGTTTCATTTCATCCCAATCG 57.283 40.909 0.00 0.00 0.00 3.34
2735 2842 6.624352 TCATTTCATCCCAATCGAATTCTC 57.376 37.500 3.52 0.00 0.00 2.87
2754 2861 8.682936 AATTCTCTATAGCTATGTGTTTTGGG 57.317 34.615 16.77 0.00 0.00 4.12
2780 2887 3.459598 TCCTTGGGGAGTATTTGATCTGG 59.540 47.826 0.00 0.00 36.57 3.86
2781 2888 3.217626 CTTGGGGAGTATTTGATCTGGC 58.782 50.000 0.00 0.00 0.00 4.85
2790 2897 0.400213 TTTGATCTGGCGGTGGTCTT 59.600 50.000 0.00 0.00 0.00 3.01
2794 2901 1.207329 GATCTGGCGGTGGTCTTAAGT 59.793 52.381 1.63 0.00 0.00 2.24
2839 2949 6.346477 TGTCAGTTAGCAGTTACTCTGATT 57.654 37.500 4.44 0.00 46.27 2.57
2883 2993 3.685139 TCTTCATCACAGTTCCAGACC 57.315 47.619 0.00 0.00 0.00 3.85
2887 2997 4.371624 TCATCACAGTTCCAGACCAAAT 57.628 40.909 0.00 0.00 0.00 2.32
2888 2998 5.497464 TCATCACAGTTCCAGACCAAATA 57.503 39.130 0.00 0.00 0.00 1.40
2895 3005 4.697352 CAGTTCCAGACCAAATACCAGAAG 59.303 45.833 0.00 0.00 0.00 2.85
2968 3078 5.558818 TGTTTATTGCAATGCCTGGAAATT 58.441 33.333 22.27 0.00 39.03 1.82
2985 3095 6.991938 TGGAAATTTGATGTTAGGTCCAAAG 58.008 36.000 0.00 0.00 32.87 2.77
2987 3097 7.726291 TGGAAATTTGATGTTAGGTCCAAAGTA 59.274 33.333 0.00 0.00 32.87 2.24
3000 3110 6.958767 AGGTCCAAAGTATAAACTGTAGCAT 58.041 36.000 0.00 0.00 35.62 3.79
3005 3115 8.318412 TCCAAAGTATAAACTGTAGCATTCTGA 58.682 33.333 0.00 0.00 35.62 3.27
3069 3179 2.319136 ACGTGCTTGTGGTACAAAGA 57.681 45.000 0.00 0.00 44.16 2.52
3072 3182 3.440872 ACGTGCTTGTGGTACAAAGAAAA 59.559 39.130 0.00 0.00 44.16 2.29
3078 3188 5.590530 TTGTGGTACAAAGAAAACTGCAT 57.409 34.783 0.00 0.00 44.16 3.96
3082 3192 5.629435 GTGGTACAAAGAAAACTGCATTAGC 59.371 40.000 0.00 0.00 44.16 3.09
3112 3246 3.519510 TGCTAGTACCATCAGCCTCTTTT 59.480 43.478 0.00 0.00 34.31 2.27
3151 3285 8.173542 TGTTTAGGGAAGATTTTAACAACTCC 57.826 34.615 0.00 0.00 0.00 3.85
3156 3290 7.952671 AGGGAAGATTTTAACAACTCCTTTTC 58.047 34.615 0.00 0.00 0.00 2.29
3158 3292 8.421784 GGGAAGATTTTAACAACTCCTTTTCTT 58.578 33.333 0.00 0.00 0.00 2.52
3184 3318 4.142160 CCTTATTTTGGGGCTTAAGCTCAC 60.142 45.833 28.01 18.46 45.20 3.51
3196 3330 6.238759 GGGCTTAAGCTCACCATAATGTTTAG 60.239 42.308 25.88 0.00 42.27 1.85
3199 3333 4.137116 AGCTCACCATAATGTTTAGCGA 57.863 40.909 0.00 0.00 32.51 4.93
3214 3348 6.599437 TGTTTAGCGAAGATTTTAGCAACTC 58.401 36.000 3.99 0.00 37.39 3.01
3216 3350 4.935885 AGCGAAGATTTTAGCAACTCTG 57.064 40.909 3.99 0.00 37.39 3.35
3247 3386 8.448008 TCCATTTGAGGCTTAATCTAACCATAT 58.552 33.333 0.00 0.00 0.00 1.78
3248 3387 8.517878 CCATTTGAGGCTTAATCTAACCATATG 58.482 37.037 0.00 0.00 0.00 1.78
3256 3395 7.420800 GCTTAATCTAACCATATGGCATATGC 58.579 38.462 32.59 19.79 40.96 3.14
3257 3396 7.552458 TTAATCTAACCATATGGCATATGCG 57.448 36.000 32.59 27.37 40.96 4.73
3259 3398 2.205022 AACCATATGGCATATGCGCT 57.795 45.000 32.59 19.86 40.96 5.92
3279 3418 5.237344 GCGCTACTTCATCATATTTCCTTGT 59.763 40.000 0.00 0.00 0.00 3.16
3283 3422 8.462016 GCTACTTCATCATATTTCCTTGTGTTT 58.538 33.333 0.00 0.00 0.00 2.83
3325 3464 4.088634 ACATGCTCTCTGTTCTCTTCTCT 58.911 43.478 0.00 0.00 0.00 3.10
3327 3466 4.782019 TGCTCTCTGTTCTCTTCTCTTC 57.218 45.455 0.00 0.00 0.00 2.87
3328 3467 4.406456 TGCTCTCTGTTCTCTTCTCTTCT 58.594 43.478 0.00 0.00 0.00 2.85
3329 3468 4.458989 TGCTCTCTGTTCTCTTCTCTTCTC 59.541 45.833 0.00 0.00 0.00 2.87
3331 3470 5.255397 TCTCTGTTCTCTTCTCTTCTCCT 57.745 43.478 0.00 0.00 0.00 3.69
3332 3471 5.640147 TCTCTGTTCTCTTCTCTTCTCCTT 58.360 41.667 0.00 0.00 0.00 3.36
3333 3472 5.476599 TCTCTGTTCTCTTCTCTTCTCCTTG 59.523 44.000 0.00 0.00 0.00 3.61
3336 3475 5.394738 TGTTCTCTTCTCTTCTCCTTGGTA 58.605 41.667 0.00 0.00 0.00 3.25
3337 3476 5.839063 TGTTCTCTTCTCTTCTCCTTGGTAA 59.161 40.000 0.00 0.00 0.00 2.85
3338 3477 6.498651 TGTTCTCTTCTCTTCTCCTTGGTAAT 59.501 38.462 0.00 0.00 0.00 1.89
3339 3478 7.674348 TGTTCTCTTCTCTTCTCCTTGGTAATA 59.326 37.037 0.00 0.00 0.00 0.98
3340 3479 8.532819 GTTCTCTTCTCTTCTCCTTGGTAATAA 58.467 37.037 0.00 0.00 0.00 1.40
3341 3480 8.068892 TCTCTTCTCTTCTCCTTGGTAATAAC 57.931 38.462 0.00 0.00 0.00 1.89
3342 3481 7.896496 TCTCTTCTCTTCTCCTTGGTAATAACT 59.104 37.037 0.00 0.00 0.00 2.24
3343 3482 9.191479 CTCTTCTCTTCTCCTTGGTAATAACTA 57.809 37.037 0.00 0.00 0.00 2.24
3344 3483 9.543231 TCTTCTCTTCTCCTTGGTAATAACTAA 57.457 33.333 0.00 0.00 0.00 2.24
3347 3486 9.939802 TCTCTTCTCCTTGGTAATAACTAAAAC 57.060 33.333 0.00 0.00 0.00 2.43
3348 3487 9.163899 CTCTTCTCCTTGGTAATAACTAAAACC 57.836 37.037 0.00 0.00 0.00 3.27
3349 3488 8.662255 TCTTCTCCTTGGTAATAACTAAAACCA 58.338 33.333 0.00 0.00 40.19 3.67
3350 3489 8.625786 TTCTCCTTGGTAATAACTAAAACCAC 57.374 34.615 0.00 0.00 41.58 4.16
3351 3490 6.875195 TCTCCTTGGTAATAACTAAAACCACG 59.125 38.462 0.00 0.00 41.58 4.94
3352 3491 6.532826 TCCTTGGTAATAACTAAAACCACGT 58.467 36.000 0.00 0.00 41.58 4.49
3353 3492 6.650390 TCCTTGGTAATAACTAAAACCACGTC 59.350 38.462 0.00 0.00 41.58 4.34
3354 3493 6.427547 CCTTGGTAATAACTAAAACCACGTCA 59.572 38.462 0.00 0.00 41.58 4.35
3355 3494 6.783892 TGGTAATAACTAAAACCACGTCAC 57.216 37.500 0.00 0.00 37.09 3.67
3356 3495 6.523840 TGGTAATAACTAAAACCACGTCACT 58.476 36.000 0.00 0.00 37.09 3.41
3357 3496 6.991531 TGGTAATAACTAAAACCACGTCACTT 59.008 34.615 0.00 0.00 37.09 3.16
3358 3497 7.041916 TGGTAATAACTAAAACCACGTCACTTG 60.042 37.037 0.00 0.00 37.09 3.16
3359 3498 5.934935 ATAACTAAAACCACGTCACTTGG 57.065 39.130 0.00 0.00 40.32 3.61
3360 3499 2.567985 ACTAAAACCACGTCACTTGGG 58.432 47.619 5.13 0.00 38.59 4.12
3361 3500 2.171027 ACTAAAACCACGTCACTTGGGA 59.829 45.455 5.13 0.00 38.59 4.37
3362 3501 1.385528 AAAACCACGTCACTTGGGAC 58.614 50.000 5.13 0.00 38.59 4.46
3369 3508 1.595357 GTCACTTGGGACGGGTAGG 59.405 63.158 0.00 0.00 0.00 3.18
3370 3509 1.611261 TCACTTGGGACGGGTAGGG 60.611 63.158 0.00 0.00 0.00 3.53
3379 3518 2.302260 GGACGGGTAGGGAGTACTAAC 58.698 57.143 0.00 0.00 0.00 2.34
3380 3519 2.092158 GGACGGGTAGGGAGTACTAACT 60.092 54.545 0.00 0.00 39.21 2.24
3384 3523 3.429960 CGGGTAGGGAGTACTAACTTTGC 60.430 52.174 0.00 0.00 35.56 3.68
3385 3524 3.118482 GGGTAGGGAGTACTAACTTTGCC 60.118 52.174 0.00 1.33 35.56 4.52
3400 3539 0.249953 TTGCCTGGCAATGCAACAAG 60.250 50.000 29.24 0.00 43.99 3.16
3443 3582 7.458409 ACAAAAGTGATGATAGTTCATTGCT 57.542 32.000 0.00 0.00 42.73 3.91
3449 3588 8.206325 AGTGATGATAGTTCATTGCTACTTTG 57.794 34.615 0.00 0.00 42.73 2.77
3472 3611 0.692476 ACCTGGAATGCACTGCAGTA 59.308 50.000 21.20 5.19 43.65 2.74
3473 3612 1.089920 CCTGGAATGCACTGCAGTAC 58.910 55.000 21.20 15.47 43.65 2.73
3481 3620 4.753516 ATGCACTGCAGTACCAGTATTA 57.246 40.909 21.20 0.00 43.85 0.98
3506 3645 1.335872 GCATTTGTGCAGCGTACCTTT 60.336 47.619 0.00 0.00 34.41 3.11
3524 3663 8.540492 CGTACCTTTAATCTGTTCATGATGTAC 58.460 37.037 0.00 0.00 0.00 2.90
3525 3664 9.378551 GTACCTTTAATCTGTTCATGATGTACA 57.621 33.333 4.82 4.82 0.00 2.90
3526 3665 8.498054 ACCTTTAATCTGTTCATGATGTACAG 57.502 34.615 21.59 21.59 44.06 2.74
3560 3699 8.778358 GGTAGCTAAATGATTAATGTCCTTCTG 58.222 37.037 0.00 0.00 0.00 3.02
3671 3810 5.552870 ACTACAAGCGATTCTTCCCATAT 57.447 39.130 0.00 0.00 31.27 1.78
3714 3853 1.071699 GGCTTGACAGTGAAGGTACCA 59.928 52.381 15.94 0.00 0.00 3.25
3734 3873 3.057104 CCAACTTCCGTATTTGGTTTCCC 60.057 47.826 0.00 0.00 35.91 3.97
3740 3879 2.490509 CCGTATTTGGTTTCCCCAGTTC 59.509 50.000 0.00 0.00 46.31 3.01
3745 3884 1.904287 TGGTTTCCCCAGTTCGATTG 58.096 50.000 0.00 0.00 38.72 2.67
3761 3900 2.092211 CGATTGTCCTGTTTAGCGTGTC 59.908 50.000 0.00 0.00 0.00 3.67
3762 3901 2.902705 TTGTCCTGTTTAGCGTGTCT 57.097 45.000 0.00 0.00 0.00 3.41
3763 3902 2.148916 TGTCCTGTTTAGCGTGTCTG 57.851 50.000 0.00 0.00 0.00 3.51
3764 3903 1.684450 TGTCCTGTTTAGCGTGTCTGA 59.316 47.619 0.00 0.00 0.00 3.27
3797 3936 0.529378 CTTGTGCAGGGAAAGGATGC 59.471 55.000 0.00 0.00 40.40 3.91
3800 3939 1.675310 TGCAGGGAAAGGATGCGTG 60.675 57.895 0.00 0.00 42.92 5.34
3806 3945 1.278238 GGAAAGGATGCGTGTACTCG 58.722 55.000 12.77 12.77 0.00 4.18
3866 4005 2.178764 TGCTCAGGGATCAGGATCTACT 59.821 50.000 9.01 5.48 37.92 2.57
3882 4021 4.558226 TCTACTTTGATCATGCCAGTGT 57.442 40.909 0.00 0.00 0.00 3.55
3974 4113 4.065088 GTGCTCAGGAGTATTTGTTGTCA 58.935 43.478 0.00 0.00 0.00 3.58
3980 4119 6.108687 TCAGGAGTATTTGTTGTCAGCTATG 58.891 40.000 0.00 0.00 0.00 2.23
3983 4122 6.820656 AGGAGTATTTGTTGTCAGCTATGAAG 59.179 38.462 0.00 0.00 37.14 3.02
3985 4124 7.119846 GGAGTATTTGTTGTCAGCTATGAAGTT 59.880 37.037 0.00 0.00 37.14 2.66
3986 4125 7.810658 AGTATTTGTTGTCAGCTATGAAGTTG 58.189 34.615 0.00 0.00 37.14 3.16
3992 4131 4.582869 TGTCAGCTATGAAGTTGCAGATT 58.417 39.130 0.00 0.00 37.14 2.40
3993 4132 4.393990 TGTCAGCTATGAAGTTGCAGATTG 59.606 41.667 0.00 0.00 37.14 2.67
3994 4133 3.943381 TCAGCTATGAAGTTGCAGATTGG 59.057 43.478 0.00 0.00 34.19 3.16
3995 4134 3.693085 CAGCTATGAAGTTGCAGATTGGT 59.307 43.478 0.00 0.00 0.00 3.67
3996 4135 4.157289 CAGCTATGAAGTTGCAGATTGGTT 59.843 41.667 0.00 0.00 0.00 3.67
3997 4136 4.157289 AGCTATGAAGTTGCAGATTGGTTG 59.843 41.667 0.00 0.00 0.00 3.77
3998 4137 4.156556 GCTATGAAGTTGCAGATTGGTTGA 59.843 41.667 0.00 0.00 0.00 3.18
3999 4138 5.163581 GCTATGAAGTTGCAGATTGGTTGAT 60.164 40.000 0.00 0.00 0.00 2.57
4000 4139 4.771590 TGAAGTTGCAGATTGGTTGATC 57.228 40.909 0.00 0.00 0.00 2.92
4001 4140 4.143543 TGAAGTTGCAGATTGGTTGATCA 58.856 39.130 0.00 0.00 0.00 2.92
4002 4141 4.768448 TGAAGTTGCAGATTGGTTGATCAT 59.232 37.500 0.00 0.00 0.00 2.45
4003 4142 4.713824 AGTTGCAGATTGGTTGATCATG 57.286 40.909 0.00 0.00 0.00 3.07
4004 4143 4.084287 AGTTGCAGATTGGTTGATCATGT 58.916 39.130 0.00 0.00 0.00 3.21
4005 4144 4.157289 AGTTGCAGATTGGTTGATCATGTC 59.843 41.667 0.00 0.00 0.00 3.06
4006 4145 3.959293 TGCAGATTGGTTGATCATGTCT 58.041 40.909 0.00 0.00 0.00 3.41
4007 4146 3.692593 TGCAGATTGGTTGATCATGTCTG 59.307 43.478 0.00 7.47 35.11 3.51
4008 4147 3.943381 GCAGATTGGTTGATCATGTCTGA 59.057 43.478 19.08 0.00 34.50 3.27
4009 4148 4.201891 GCAGATTGGTTGATCATGTCTGAC 60.202 45.833 19.08 0.00 34.50 3.51
4010 4149 4.939439 CAGATTGGTTGATCATGTCTGACA 59.061 41.667 13.60 13.60 34.50 3.58
4011 4150 5.589050 CAGATTGGTTGATCATGTCTGACAT 59.411 40.000 17.24 17.24 39.91 3.06
4012 4151 6.764560 CAGATTGGTTGATCATGTCTGACATA 59.235 38.462 21.88 11.57 36.53 2.29
4013 4152 7.444487 CAGATTGGTTGATCATGTCTGACATAT 59.556 37.037 21.88 15.22 36.53 1.78
4028 4167 7.877612 TGTCTGACATATTCTTGCTGACTAAAA 59.122 33.333 6.36 0.00 0.00 1.52
4035 4174 5.772825 TTCTTGCTGACTAAAACAAGCAT 57.227 34.783 0.00 0.00 39.45 3.79
4036 4175 5.112220 TCTTGCTGACTAAAACAAGCATG 57.888 39.130 0.00 0.44 39.45 4.06
4093 4232 1.896465 AGTGCCTCAGAGGTCACTAAC 59.104 52.381 30.24 15.87 44.80 2.34
4096 4235 2.906389 TGCCTCAGAGGTCACTAACAAT 59.094 45.455 18.37 0.00 37.80 2.71
4097 4236 3.055819 TGCCTCAGAGGTCACTAACAATC 60.056 47.826 18.37 0.00 37.80 2.67
4098 4237 3.196685 GCCTCAGAGGTCACTAACAATCT 59.803 47.826 18.37 0.00 37.80 2.40
4230 4369 0.249676 GTTTCCCTCTCTCGGTTCCC 59.750 60.000 0.00 0.00 0.00 3.97
4253 4392 3.681897 AGAGATCATCGTTTGTTGCTGTC 59.318 43.478 0.00 0.00 0.00 3.51
4339 4478 4.085357 TGTAGTCATCAACAAAGCTGGT 57.915 40.909 0.00 0.00 0.00 4.00
4342 4481 4.085357 AGTCATCAACAAAGCTGGTACA 57.915 40.909 0.00 0.00 0.00 2.90
4503 4642 2.514824 GGATCGACCCAGCTTGCC 60.515 66.667 0.00 0.00 0.00 4.52
4642 4781 5.105997 GCATCTTCAACTGCCAGACTAAAAT 60.106 40.000 0.00 0.00 32.15 1.82
4643 4782 6.571150 GCATCTTCAACTGCCAGACTAAAATT 60.571 38.462 0.00 0.00 32.15 1.82
4644 4783 6.959639 TCTTCAACTGCCAGACTAAAATTT 57.040 33.333 0.00 0.00 0.00 1.82
4928 5073 2.766263 CTGCCTAGTCCTAATCACACCA 59.234 50.000 0.00 0.00 0.00 4.17
4987 5132 3.343617 TCTTTTATGTTTCCCGAGCCAG 58.656 45.455 0.00 0.00 0.00 4.85
5003 5148 3.692406 AGGTTCGGCTGTCGGGTC 61.692 66.667 0.30 0.00 39.77 4.46
5011 5156 0.322546 GGCTGTCGGGTCAGGATTTT 60.323 55.000 0.00 0.00 36.12 1.82
5018 5163 1.807742 CGGGTCAGGATTTTGCGTTAA 59.192 47.619 0.00 0.00 0.00 2.01
5034 5179 3.739494 CGTTAAACATACAAGGTTCGGC 58.261 45.455 0.00 0.00 0.00 5.54
5039 5184 1.346395 ACATACAAGGTTCGGCTGTCA 59.654 47.619 0.00 0.00 0.00 3.58
5052 5197 1.363744 GCTGTCAGGTCAGGATTTCG 58.636 55.000 1.14 0.00 36.12 3.46
5181 5522 1.412710 GGGACTGCCAGAATCGACATA 59.587 52.381 0.00 0.00 35.15 2.29
5279 5620 6.463614 GGTGTCACAGAATATAGGATGCTCTT 60.464 42.308 5.12 0.00 0.00 2.85
5313 5654 3.877508 GGTACATATTGAAGTGGGCACTC 59.122 47.826 0.00 0.00 41.58 3.51
5317 5658 2.486472 ATTGAAGTGGGCACTCTCTG 57.514 50.000 0.00 0.00 41.58 3.35
5414 5756 8.915871 ACAGAAAATTGTATGCATACATGTTC 57.084 30.769 33.93 30.86 42.32 3.18
5448 5790 2.470999 GCACACGGCATAAAGTTTTGTG 59.529 45.455 10.24 10.24 43.97 3.33
5589 5943 3.310774 GCACGCACATAGAACATGAAGAT 59.689 43.478 0.00 0.00 0.00 2.40
5603 5957 4.094887 ACATGAAGATGTATCCGTGCAAAC 59.905 41.667 0.00 0.00 41.27 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 1.619654 TTGACAGGGCTTCCACAATG 58.380 50.000 0.00 0.00 0.00 2.82
32 35 2.380064 TTTGACAGGGCTTCCACAAT 57.620 45.000 0.00 0.00 0.00 2.71
33 36 2.031120 CTTTTGACAGGGCTTCCACAA 58.969 47.619 0.00 0.00 0.00 3.33
181 195 8.573035 TGTGTTAGAAATGACATCCTTTTAACC 58.427 33.333 9.25 4.40 0.00 2.85
285 299 7.752686 GCCTTTCTAGAGATTTCAACAAATGAC 59.247 37.037 0.00 0.00 37.92 3.06
287 301 7.596494 TGCCTTTCTAGAGATTTCAACAAATG 58.404 34.615 0.00 0.00 31.94 2.32
288 302 7.765695 TGCCTTTCTAGAGATTTCAACAAAT 57.234 32.000 0.00 0.00 34.70 2.32
289 303 7.581213 TTGCCTTTCTAGAGATTTCAACAAA 57.419 32.000 0.00 0.00 0.00 2.83
291 305 7.765695 ATTTGCCTTTCTAGAGATTTCAACA 57.234 32.000 0.00 0.00 0.00 3.33
300 321 7.519008 CGTGCCTAAATATTTGCCTTTCTAGAG 60.519 40.741 11.05 0.00 0.00 2.43
310 331 5.294552 ACTCTCTTCGTGCCTAAATATTTGC 59.705 40.000 11.05 7.21 0.00 3.68
347 368 3.950397 TCCAGTGTATTAAGCACTTGGG 58.050 45.455 19.12 15.28 43.87 4.12
360 381 8.141298 TCTGTTGTTAAGGATAATCCAGTGTA 57.859 34.615 0.00 0.00 39.61 2.90
431 452 5.505173 AAACATGTAGCTGCCACATAATC 57.495 39.130 13.17 0.00 34.88 1.75
437 458 2.423185 TGCATAAACATGTAGCTGCCAC 59.577 45.455 18.32 0.00 0.00 5.01
455 476 8.551205 GTGAGTCATCGATTATATTTTCTTGCA 58.449 33.333 0.00 0.00 0.00 4.08
457 478 9.855361 GTGTGAGTCATCGATTATATTTTCTTG 57.145 33.333 0.00 0.00 0.00 3.02
458 479 9.823647 AGTGTGAGTCATCGATTATATTTTCTT 57.176 29.630 0.00 0.00 0.00 2.52
460 481 9.855361 CAAGTGTGAGTCATCGATTATATTTTC 57.145 33.333 0.00 0.00 0.00 2.29
472 500 3.124806 CACATCTGCAAGTGTGAGTCATC 59.875 47.826 20.72 0.00 43.73 2.92
543 571 9.646522 AATGTAAGCCAATACTATCCTCATTTT 57.353 29.630 0.00 0.00 0.00 1.82
556 584 8.207545 ACCAAAACTGAAAAATGTAAGCCAATA 58.792 29.630 0.00 0.00 0.00 1.90
559 587 5.983540 ACCAAAACTGAAAAATGTAAGCCA 58.016 33.333 0.00 0.00 0.00 4.75
607 635 4.680110 GCGCACGACTTAGATGTACAATAT 59.320 41.667 0.30 0.00 0.00 1.28
618 646 1.258982 GATCAATGGCGCACGACTTAG 59.741 52.381 10.83 0.00 0.00 2.18
624 652 0.043053 CGTAAGATCAATGGCGCACG 60.043 55.000 10.83 1.85 43.02 5.34
628 656 3.186909 TCTTCACGTAAGATCAATGGCG 58.813 45.455 0.00 0.00 39.36 5.69
638 666 2.666508 CCCACACGAATCTTCACGTAAG 59.333 50.000 0.00 0.00 40.76 2.34
663 691 9.921637 CTTAATGACTTAATTAGCACCCAAAAA 57.078 29.630 0.00 0.00 0.00 1.94
668 696 8.345565 CACATCTTAATGACTTAATTAGCACCC 58.654 37.037 0.00 0.00 36.67 4.61
669 697 7.857885 GCACATCTTAATGACTTAATTAGCACC 59.142 37.037 0.00 0.00 36.67 5.01
685 714 2.829720 AGTAGTCCACGGCACATCTTAA 59.170 45.455 0.00 0.00 0.00 1.85
713 743 8.722622 ATAATCCGATAGTTTCTCCTTCCTTA 57.277 34.615 0.00 0.00 0.00 2.69
741 771 8.001358 TCGAATACGTTTCGTTTTGTGTTATA 57.999 30.769 22.75 5.93 41.54 0.98
743 773 6.198029 TCTCGAATACGTTTCGTTTTGTGTTA 59.802 34.615 22.75 8.04 41.54 2.41
745 775 4.503734 TCTCGAATACGTTTCGTTTTGTGT 59.496 37.500 22.75 0.00 41.54 3.72
746 776 4.997107 TCTCGAATACGTTTCGTTTTGTG 58.003 39.130 22.75 12.67 41.54 3.33
747 777 5.640218 TTCTCGAATACGTTTCGTTTTGT 57.360 34.783 22.75 0.00 41.54 2.83
748 778 6.939953 TTTTCTCGAATACGTTTCGTTTTG 57.060 33.333 22.75 15.28 41.54 2.44
750 780 5.618395 GCTTTTTCTCGAATACGTTTCGTTT 59.382 36.000 22.75 1.37 41.54 3.60
753 783 3.766913 CGCTTTTTCTCGAATACGTTTCG 59.233 43.478 19.81 19.81 42.74 3.46
754 784 4.938129 TCGCTTTTTCTCGAATACGTTTC 58.062 39.130 0.00 0.00 40.69 2.78
758 788 8.529756 AAATATTTCGCTTTTTCTCGAATACG 57.470 30.769 0.00 0.00 43.09 3.06
761 791 9.065871 CAGAAAATATTTCGCTTTTTCTCGAAT 57.934 29.630 0.10 0.00 43.97 3.34
762 792 8.073768 ACAGAAAATATTTCGCTTTTTCTCGAA 58.926 29.630 0.10 0.00 43.97 3.71
763 793 7.581476 ACAGAAAATATTTCGCTTTTTCTCGA 58.419 30.769 0.10 0.00 43.97 4.04
764 794 7.252671 CGACAGAAAATATTTCGCTTTTTCTCG 60.253 37.037 0.10 6.00 43.97 4.04
765 795 7.007456 CCGACAGAAAATATTTCGCTTTTTCTC 59.993 37.037 0.10 0.00 43.97 2.87
766 796 6.801862 CCGACAGAAAATATTTCGCTTTTTCT 59.198 34.615 0.10 4.51 45.68 2.52
767 797 6.033513 CCCGACAGAAAATATTTCGCTTTTTC 59.966 38.462 0.10 0.00 38.84 2.29
768 798 5.861787 CCCGACAGAAAATATTTCGCTTTTT 59.138 36.000 0.10 0.00 0.00 1.94
769 799 5.399013 CCCGACAGAAAATATTTCGCTTTT 58.601 37.500 0.10 0.00 0.00 2.27
770 800 4.142469 CCCCGACAGAAAATATTTCGCTTT 60.142 41.667 0.10 0.00 0.00 3.51
771 801 3.377172 CCCCGACAGAAAATATTTCGCTT 59.623 43.478 0.10 0.00 0.00 4.68
772 802 2.943033 CCCCGACAGAAAATATTTCGCT 59.057 45.455 0.10 0.00 0.00 4.93
773 803 2.940410 TCCCCGACAGAAAATATTTCGC 59.060 45.455 0.10 0.00 0.00 4.70
898 928 0.528684 CTTCGTGGCCTTCTCGATCC 60.529 60.000 3.32 0.00 40.40 3.36
978 1008 0.035458 AGTTCGTGGCTTGGAGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
981 1011 1.671742 GGAGTTCGTGGCTTGGAGA 59.328 57.895 0.00 0.00 0.00 3.71
1022 1052 3.787001 GTAGAGGGCGGGCTGCTT 61.787 66.667 19.30 6.93 45.43 3.91
1038 1069 4.735132 CGACATGGCGGTGGTCGT 62.735 66.667 14.85 0.00 46.68 4.34
1170 1206 0.827089 CCTGCACATCCACCAACCAA 60.827 55.000 0.00 0.00 0.00 3.67
1171 1207 1.228521 CCTGCACATCCACCAACCA 60.229 57.895 0.00 0.00 0.00 3.67
1385 1421 4.981647 ACCAAGGTATCCAAATCCCTATCA 59.018 41.667 0.00 0.00 0.00 2.15
1413 1449 1.485066 TGAGGCTCTAAAATCCGACCC 59.515 52.381 16.72 0.00 0.00 4.46
1475 1511 5.538849 TTAGGTGTTTCCCCAAATTCAAC 57.461 39.130 0.00 0.00 36.75 3.18
1546 1583 6.072342 TCGCATCAAACTATAACGCTATAGGA 60.072 38.462 15.44 5.59 40.94 2.94
1547 1584 6.090783 TCGCATCAAACTATAACGCTATAGG 58.909 40.000 15.44 0.91 40.94 2.57
1548 1585 7.742019 ATCGCATCAAACTATAACGCTATAG 57.258 36.000 10.62 10.62 41.95 1.31
1549 1586 8.432359 CAAATCGCATCAAACTATAACGCTATA 58.568 33.333 0.00 0.00 0.00 1.31
1550 1587 7.290842 CAAATCGCATCAAACTATAACGCTAT 58.709 34.615 0.00 0.00 0.00 2.97
1551 1588 6.645705 CAAATCGCATCAAACTATAACGCTA 58.354 36.000 0.00 0.00 0.00 4.26
1552 1589 5.501715 CAAATCGCATCAAACTATAACGCT 58.498 37.500 0.00 0.00 0.00 5.07
1553 1590 4.144731 GCAAATCGCATCAAACTATAACGC 59.855 41.667 0.00 0.00 41.79 4.84
1554 1591 4.670621 GGCAAATCGCATCAAACTATAACG 59.329 41.667 0.00 0.00 45.17 3.18
1555 1592 4.670621 CGGCAAATCGCATCAAACTATAAC 59.329 41.667 0.00 0.00 45.17 1.89
1556 1593 4.572795 TCGGCAAATCGCATCAAACTATAA 59.427 37.500 0.00 0.00 45.17 0.98
1557 1594 4.025229 GTCGGCAAATCGCATCAAACTATA 60.025 41.667 0.00 0.00 45.17 1.31
1558 1595 2.942376 TCGGCAAATCGCATCAAACTAT 59.058 40.909 0.00 0.00 45.17 2.12
1559 1596 2.095213 GTCGGCAAATCGCATCAAACTA 59.905 45.455 0.00 0.00 45.17 2.24
1560 1597 1.135689 GTCGGCAAATCGCATCAAACT 60.136 47.619 0.00 0.00 45.17 2.66
1561 1598 1.259316 GTCGGCAAATCGCATCAAAC 58.741 50.000 0.00 0.00 45.17 2.93
1580 1617 5.703130 TGTCTATGTCGTCTCTCCATAGATG 59.297 44.000 10.70 0.00 45.13 2.90
1581 1618 5.870706 TGTCTATGTCGTCTCTCCATAGAT 58.129 41.667 10.70 0.00 45.13 1.98
1601 1638 4.510038 AAGACAAGGCATGTTTCATGTC 57.490 40.909 6.26 6.26 44.12 3.06
1797 1835 2.609459 CGCCAGTATAGAAGCAAACCTG 59.391 50.000 0.00 0.00 0.00 4.00
1812 1850 0.250901 ACTTTCTGAATGCCGCCAGT 60.251 50.000 3.45 0.00 0.00 4.00
1818 1856 4.065088 TCACTGTACACTTTCTGAATGCC 58.935 43.478 0.00 0.00 0.00 4.40
1819 1857 4.083802 GGTCACTGTACACTTTCTGAATGC 60.084 45.833 0.00 0.00 0.00 3.56
1820 1858 5.300752 AGGTCACTGTACACTTTCTGAATG 58.699 41.667 0.00 2.09 0.00 2.67
1832 1870 7.389053 AGAATTTCAAGATGAAGGTCACTGTAC 59.611 37.037 0.00 0.00 37.70 2.90
1837 1875 7.446001 AGAAGAATTTCAAGATGAAGGTCAC 57.554 36.000 0.00 3.22 37.70 3.67
1854 1892 8.878211 ACACACATCATGGATCTATAGAAGAAT 58.122 33.333 6.52 0.00 37.89 2.40
1856 1894 7.727634 AGACACACATCATGGATCTATAGAAGA 59.272 37.037 6.52 1.12 39.02 2.87
1857 1895 7.894708 AGACACACATCATGGATCTATAGAAG 58.105 38.462 6.52 0.00 0.00 2.85
1860 1898 7.813627 CAGAAGACACACATCATGGATCTATAG 59.186 40.741 0.00 0.00 0.00 1.31
1861 1899 7.256083 CCAGAAGACACACATCATGGATCTATA 60.256 40.741 0.00 0.00 0.00 1.31
1862 1900 6.464039 CCAGAAGACACACATCATGGATCTAT 60.464 42.308 0.00 0.00 0.00 1.98
1863 1901 5.163374 CCAGAAGACACACATCATGGATCTA 60.163 44.000 0.00 0.00 0.00 1.98
1864 1902 4.383880 CCAGAAGACACACATCATGGATCT 60.384 45.833 0.00 0.00 0.00 2.75
1865 1903 3.875727 CCAGAAGACACACATCATGGATC 59.124 47.826 0.00 0.00 0.00 3.36
1866 1904 3.371273 CCCAGAAGACACACATCATGGAT 60.371 47.826 0.00 0.00 0.00 3.41
1867 1905 2.026915 CCCAGAAGACACACATCATGGA 60.027 50.000 0.00 0.00 0.00 3.41
1868 1906 2.026915 TCCCAGAAGACACACATCATGG 60.027 50.000 0.00 0.00 0.00 3.66
1869 1907 3.339253 TCCCAGAAGACACACATCATG 57.661 47.619 0.00 0.00 0.00 3.07
1870 1908 4.267536 CAATCCCAGAAGACACACATCAT 58.732 43.478 0.00 0.00 0.00 2.45
1872 1910 3.012518 CCAATCCCAGAAGACACACATC 58.987 50.000 0.00 0.00 0.00 3.06
1878 1917 1.003580 GCAGACCAATCCCAGAAGACA 59.996 52.381 0.00 0.00 0.00 3.41
1888 1927 2.351726 GTCATGTTACGGCAGACCAATC 59.648 50.000 0.00 0.00 34.57 2.67
1898 1937 6.674066 ACCAATTACTTTTGTCATGTTACGG 58.326 36.000 0.00 0.00 0.00 4.02
1907 1946 9.758651 ACCAAAATAGAACCAATTACTTTTGTC 57.241 29.630 0.00 0.00 32.82 3.18
1911 1950 9.981114 CAGAACCAAAATAGAACCAATTACTTT 57.019 29.630 0.00 0.00 0.00 2.66
1912 1951 9.143155 ACAGAACCAAAATAGAACCAATTACTT 57.857 29.630 0.00 0.00 0.00 2.24
1915 1954 9.238368 CCTACAGAACCAAAATAGAACCAATTA 57.762 33.333 0.00 0.00 0.00 1.40
1916 1955 7.728532 ACCTACAGAACCAAAATAGAACCAATT 59.271 33.333 0.00 0.00 0.00 2.32
1917 1956 7.176690 CACCTACAGAACCAAAATAGAACCAAT 59.823 37.037 0.00 0.00 0.00 3.16
1931 1982 6.688637 AACAGTTTTAACACCTACAGAACC 57.311 37.500 0.00 0.00 0.00 3.62
1936 1987 8.407064 CCATAACAAACAGTTTTAACACCTACA 58.593 33.333 0.00 0.00 41.64 2.74
1937 1988 8.623030 TCCATAACAAACAGTTTTAACACCTAC 58.377 33.333 0.00 0.00 41.64 3.18
1942 1993 8.018520 CGCTATCCATAACAAACAGTTTTAACA 58.981 33.333 0.00 0.00 41.64 2.41
1946 1997 5.105917 CCCGCTATCCATAACAAACAGTTTT 60.106 40.000 0.00 0.00 41.64 2.43
1957 2008 9.826574 GTATTATCAATTACCCGCTATCCATAA 57.173 33.333 0.00 0.00 0.00 1.90
1968 2019 6.543735 AGGCAAGAGGTATTATCAATTACCC 58.456 40.000 0.00 0.00 33.23 3.69
1973 2024 8.686739 ACCTATAGGCAAGAGGTATTATCAAT 57.313 34.615 19.25 0.00 41.91 2.57
1975 2026 8.375506 CAAACCTATAGGCAAGAGGTATTATCA 58.624 37.037 19.25 0.00 42.93 2.15
1979 2030 5.132816 AGCAAACCTATAGGCAAGAGGTATT 59.867 40.000 19.25 0.00 42.93 1.89
1983 2034 3.471680 GAGCAAACCTATAGGCAAGAGG 58.528 50.000 19.25 4.13 39.32 3.69
1989 2040 4.202367 ACAGTATGGAGCAAACCTATAGGC 60.202 45.833 19.25 4.63 43.62 3.93
2008 2059 7.436080 GTCATCAATTTTCACATCAACAACAGT 59.564 33.333 0.00 0.00 0.00 3.55
2012 2063 7.042590 GCTTGTCATCAATTTTCACATCAACAA 60.043 33.333 0.00 0.00 32.82 2.83
2032 2084 3.713288 GGTGTAAACCCAAAAGCTTGTC 58.287 45.455 0.00 0.00 0.00 3.18
2034 2086 2.100087 ACGGTGTAAACCCAAAAGCTTG 59.900 45.455 0.00 0.00 0.00 4.01
2042 2094 1.764134 ACTCAAGACGGTGTAAACCCA 59.236 47.619 0.00 0.00 0.00 4.51
2069 2121 8.392612 TCATCGCTTGCATCATATTATGTTATG 58.607 33.333 3.67 2.99 0.00 1.90
2076 2128 4.555262 TCGTCATCGCTTGCATCATATTA 58.445 39.130 0.00 0.00 36.96 0.98
2079 2131 2.507339 TCGTCATCGCTTGCATCATA 57.493 45.000 0.00 0.00 36.96 2.15
2089 2141 6.877556 AGATATCAATTGTATCGTCATCGC 57.122 37.500 5.13 0.00 34.51 4.58
2090 2142 8.452989 TGAAGATATCAATTGTATCGTCATCG 57.547 34.615 24.67 0.00 40.01 3.84
2096 2152 9.603298 CAACCAATGAAGATATCAATTGTATCG 57.397 33.333 17.52 9.57 42.54 2.92
2100 2156 7.037438 GCACAACCAATGAAGATATCAATTGT 58.963 34.615 17.52 8.79 42.54 2.71
2105 2161 5.255687 ACAGCACAACCAATGAAGATATCA 58.744 37.500 5.32 0.00 43.67 2.15
2109 2165 6.594788 AATTACAGCACAACCAATGAAGAT 57.405 33.333 0.00 0.00 0.00 2.40
2118 2174 5.637006 TGGAACATAATTACAGCACAACC 57.363 39.130 0.00 0.00 0.00 3.77
2126 2205 7.147983 GCAAGGGTGTATTGGAACATAATTACA 60.148 37.037 0.00 0.00 39.30 2.41
2146 2225 1.470098 GTAGCATCACAACAGCAAGGG 59.530 52.381 0.00 0.00 0.00 3.95
2181 2260 0.835971 AAATTGGGGGACTTGTGGGC 60.836 55.000 0.00 0.00 0.00 5.36
2185 2264 2.407562 AGCAAAAATTGGGGGACTTGT 58.592 42.857 0.00 0.00 0.00 3.16
2189 2268 4.617253 ACTAAAGCAAAAATTGGGGGAC 57.383 40.909 0.00 0.00 0.00 4.46
2203 2282 3.935203 TGCTGAACATGCTCTACTAAAGC 59.065 43.478 0.00 0.00 40.26 3.51
2204 2283 6.486253 TTTGCTGAACATGCTCTACTAAAG 57.514 37.500 0.00 0.00 0.00 1.85
2208 2287 2.746362 GCTTTGCTGAACATGCTCTACT 59.254 45.455 0.00 0.00 0.00 2.57
2209 2288 2.746362 AGCTTTGCTGAACATGCTCTAC 59.254 45.455 0.00 0.00 37.57 2.59
2222 2306 5.982890 TTAAGCAGGAAAATAGCTTTGCT 57.017 34.783 4.11 0.00 45.57 3.91
2237 2321 8.822855 TGATTACCGTGTAATAACATTAAGCAG 58.177 33.333 8.64 0.00 38.08 4.24
2303 2388 8.792830 ACAACAAGATATTACTGCATTGTACT 57.207 30.769 0.00 0.00 31.09 2.73
2331 2416 3.310227 CACCACAACGTTTGCTTACACTA 59.690 43.478 0.00 0.00 0.00 2.74
2336 2421 2.488545 ACAACACCACAACGTTTGCTTA 59.511 40.909 0.00 0.00 0.00 3.09
2344 2429 1.398739 TGTGCTTACAACACCACAACG 59.601 47.619 0.00 0.00 37.22 4.10
2350 2435 3.252215 TGCTAATGTGTGCTTACAACACC 59.748 43.478 4.40 0.00 37.22 4.16
2359 2444 5.359194 ACTTATACCTGCTAATGTGTGCT 57.641 39.130 0.00 0.00 0.00 4.40
2399 2484 8.154649 AGAGACATTGTTAACAAGAACGAAAT 57.845 30.769 24.22 4.27 39.47 2.17
2402 2487 7.548196 AAAGAGACATTGTTAACAAGAACGA 57.452 32.000 24.22 2.56 39.47 3.85
2403 2488 9.530129 GATAAAGAGACATTGTTAACAAGAACG 57.470 33.333 24.22 15.16 39.47 3.95
2404 2489 9.827411 GGATAAAGAGACATTGTTAACAAGAAC 57.173 33.333 24.22 16.83 39.47 3.01
2406 2491 7.333423 CGGGATAAAGAGACATTGTTAACAAGA 59.667 37.037 24.22 4.81 39.47 3.02
2407 2492 7.464358 CGGGATAAAGAGACATTGTTAACAAG 58.536 38.462 24.22 17.98 39.47 3.16
2420 2519 3.973206 TCACAAAGCGGGATAAAGAGA 57.027 42.857 0.00 0.00 0.00 3.10
2453 2552 8.623903 CAGCATATAAATTGTCAGCTTAGGAAA 58.376 33.333 0.00 0.00 0.00 3.13
2459 2558 9.177608 TCTTAACAGCATATAAATTGTCAGCTT 57.822 29.630 0.00 0.00 0.00 3.74
2476 2575 7.260603 AGCCACATATTGAAATTCTTAACAGC 58.739 34.615 0.00 0.00 0.00 4.40
2477 2576 8.461222 TGAGCCACATATTGAAATTCTTAACAG 58.539 33.333 0.00 0.00 0.00 3.16
2636 2743 2.097466 GGCAACACGTGGATAAATGAGG 59.903 50.000 21.57 0.00 0.00 3.86
2648 2755 7.384115 GTGAATGTATGTATATAGGCAACACGT 59.616 37.037 0.00 0.00 41.41 4.49
2649 2756 7.383843 TGTGAATGTATGTATATAGGCAACACG 59.616 37.037 0.00 0.00 41.41 4.49
2652 2759 7.878127 AGGTGTGAATGTATGTATATAGGCAAC 59.122 37.037 0.00 0.00 0.00 4.17
2681 2788 6.209192 TGCAAGAATCATTTGGTATCAACACT 59.791 34.615 0.00 0.00 31.78 3.55
2686 2793 5.657745 ACCATGCAAGAATCATTTGGTATCA 59.342 36.000 1.04 0.00 0.00 2.15
2705 2812 5.045215 CGATTGGGATGAAATGAAACCATG 58.955 41.667 0.00 0.00 0.00 3.66
2710 2817 7.340232 AGAGAATTCGATTGGGATGAAATGAAA 59.660 33.333 0.00 0.00 0.00 2.69
2711 2818 6.830324 AGAGAATTCGATTGGGATGAAATGAA 59.170 34.615 0.00 0.00 0.00 2.57
2712 2819 6.359804 AGAGAATTCGATTGGGATGAAATGA 58.640 36.000 0.00 0.00 0.00 2.57
2713 2820 6.630444 AGAGAATTCGATTGGGATGAAATG 57.370 37.500 0.00 0.00 0.00 2.32
2714 2821 9.664332 CTATAGAGAATTCGATTGGGATGAAAT 57.336 33.333 0.00 0.00 0.00 2.17
2728 2835 8.778358 CCCAAAACACATAGCTATAGAGAATTC 58.222 37.037 5.77 0.00 0.00 2.17
2735 2842 7.721399 AGGAAATCCCAAAACACATAGCTATAG 59.279 37.037 5.77 4.90 37.41 1.31
2754 2861 6.264067 CAGATCAAATACTCCCCAAGGAAATC 59.736 42.308 0.00 0.00 43.40 2.17
2780 2887 5.180680 AGTTCAAATAACTTAAGACCACCGC 59.819 40.000 10.09 0.00 0.00 5.68
2781 2888 6.796705 AGTTCAAATAACTTAAGACCACCG 57.203 37.500 10.09 0.00 0.00 4.94
2817 2924 6.390721 TCAATCAGAGTAACTGCTAACTGAC 58.609 40.000 0.00 0.00 45.38 3.51
2818 2925 6.590234 TCAATCAGAGTAACTGCTAACTGA 57.410 37.500 0.00 0.00 45.38 3.41
2871 2981 3.650942 TCTGGTATTTGGTCTGGAACTGT 59.349 43.478 0.00 0.00 0.00 3.55
2895 3005 2.290323 ACCAGTAATGGTGGAGCAGTTC 60.290 50.000 15.32 0.00 41.33 3.01
2940 3050 6.002704 TCCAGGCATTGCAATAAACAAAAAT 58.997 32.000 12.53 0.00 0.00 1.82
2941 3051 5.371526 TCCAGGCATTGCAATAAACAAAAA 58.628 33.333 12.53 0.00 0.00 1.94
2968 3078 9.226606 CAGTTTATACTTTGGACCTAACATCAA 57.773 33.333 0.00 0.00 30.26 2.57
2985 3095 7.905493 GCAGTTTCAGAATGCTACAGTTTATAC 59.095 37.037 1.99 0.00 37.00 1.47
2987 3097 6.846350 GCAGTTTCAGAATGCTACAGTTTAT 58.154 36.000 1.99 0.00 37.00 1.40
2989 3099 5.113502 GCAGTTTCAGAATGCTACAGTTT 57.886 39.130 1.99 0.00 37.00 2.66
2990 3100 4.756084 GCAGTTTCAGAATGCTACAGTT 57.244 40.909 1.99 0.00 37.00 3.16
3049 3159 3.455990 TCTTTGTACCACAAGCACGTA 57.544 42.857 0.00 0.00 39.53 3.57
3055 3165 4.992688 TGCAGTTTTCTTTGTACCACAAG 58.007 39.130 0.00 0.00 39.53 3.16
3150 3284 4.494484 CCCAAAATAAGGCGAAGAAAAGG 58.506 43.478 0.00 0.00 0.00 3.11
3151 3285 4.494484 CCCCAAAATAAGGCGAAGAAAAG 58.506 43.478 0.00 0.00 0.00 2.27
3184 3318 8.128582 TGCTAAAATCTTCGCTAAACATTATGG 58.871 33.333 0.00 0.00 0.00 2.74
3196 3330 4.398247 CACAGAGTTGCTAAAATCTTCGC 58.602 43.478 0.00 0.00 38.63 4.70
3214 3348 1.542492 AGCCTCAAATGGAAGCACAG 58.458 50.000 0.00 0.00 35.31 3.66
3216 3350 4.400567 AGATTAAGCCTCAAATGGAAGCAC 59.599 41.667 0.00 0.00 35.31 4.40
3224 3363 7.177392 GCCATATGGTTAGATTAAGCCTCAAAT 59.823 37.037 22.79 0.00 37.57 2.32
3247 3386 2.224257 TGATGAAGTAGCGCATATGCCA 60.224 45.455 21.77 12.04 37.91 4.92
3248 3387 2.416747 TGATGAAGTAGCGCATATGCC 58.583 47.619 21.77 14.15 37.91 4.40
3256 3395 6.258727 ACACAAGGAAATATGATGAAGTAGCG 59.741 38.462 0.00 0.00 0.00 4.26
3257 3396 7.559590 ACACAAGGAAATATGATGAAGTAGC 57.440 36.000 0.00 0.00 0.00 3.58
3259 3398 9.739276 AGAAACACAAGGAAATATGATGAAGTA 57.261 29.630 0.00 0.00 0.00 2.24
3279 3418 3.523157 TGAGGAGGCAATGGATAGAAACA 59.477 43.478 0.00 0.00 0.00 2.83
3283 3422 3.523157 TGTTTGAGGAGGCAATGGATAGA 59.477 43.478 0.00 0.00 0.00 1.98
3325 3464 7.388500 CGTGGTTTTAGTTATTACCAAGGAGAA 59.612 37.037 0.00 0.00 41.95 2.87
3327 3466 6.652062 ACGTGGTTTTAGTTATTACCAAGGAG 59.348 38.462 0.00 0.00 42.17 3.69
3328 3467 6.532826 ACGTGGTTTTAGTTATTACCAAGGA 58.467 36.000 0.00 0.00 42.17 3.36
3329 3468 6.427547 TGACGTGGTTTTAGTTATTACCAAGG 59.572 38.462 0.00 0.00 42.17 3.61
3331 3470 6.991531 AGTGACGTGGTTTTAGTTATTACCAA 59.008 34.615 0.00 0.00 41.95 3.67
3332 3471 6.523840 AGTGACGTGGTTTTAGTTATTACCA 58.476 36.000 0.00 0.00 38.29 3.25
3333 3472 7.293018 CAAGTGACGTGGTTTTAGTTATTACC 58.707 38.462 0.00 0.00 0.00 2.85
3336 3475 5.239963 CCCAAGTGACGTGGTTTTAGTTATT 59.760 40.000 16.12 0.00 34.01 1.40
3337 3476 4.758165 CCCAAGTGACGTGGTTTTAGTTAT 59.242 41.667 16.12 0.00 34.01 1.89
3338 3477 4.128643 CCCAAGTGACGTGGTTTTAGTTA 58.871 43.478 16.12 0.00 34.01 2.24
3339 3478 2.946990 CCCAAGTGACGTGGTTTTAGTT 59.053 45.455 16.12 0.00 34.01 2.24
3340 3479 2.171027 TCCCAAGTGACGTGGTTTTAGT 59.829 45.455 16.12 0.00 34.01 2.24
3341 3480 2.546789 GTCCCAAGTGACGTGGTTTTAG 59.453 50.000 16.12 0.93 34.01 1.85
3342 3481 2.563702 GTCCCAAGTGACGTGGTTTTA 58.436 47.619 16.12 0.00 34.01 1.52
3343 3482 1.385528 GTCCCAAGTGACGTGGTTTT 58.614 50.000 16.12 0.00 34.01 2.43
3344 3483 3.089788 GTCCCAAGTGACGTGGTTT 57.910 52.632 16.12 0.00 34.01 3.27
3345 3484 4.870190 GTCCCAAGTGACGTGGTT 57.130 55.556 16.12 0.00 34.01 3.67
3351 3490 1.595357 CCTACCCGTCCCAAGTGAC 59.405 63.158 0.00 0.00 0.00 3.67
3352 3491 1.611261 CCCTACCCGTCCCAAGTGA 60.611 63.158 0.00 0.00 0.00 3.41
3353 3492 1.611261 TCCCTACCCGTCCCAAGTG 60.611 63.158 0.00 0.00 0.00 3.16
3354 3493 1.305887 CTCCCTACCCGTCCCAAGT 60.306 63.158 0.00 0.00 0.00 3.16
3355 3494 0.032813 TACTCCCTACCCGTCCCAAG 60.033 60.000 0.00 0.00 0.00 3.61
3356 3495 0.324645 GTACTCCCTACCCGTCCCAA 60.325 60.000 0.00 0.00 0.00 4.12
3357 3496 1.217057 AGTACTCCCTACCCGTCCCA 61.217 60.000 0.00 0.00 0.00 4.37
3358 3497 0.846693 TAGTACTCCCTACCCGTCCC 59.153 60.000 0.00 0.00 0.00 4.46
3359 3498 2.092158 AGTTAGTACTCCCTACCCGTCC 60.092 54.545 0.00 0.00 0.00 4.79
3360 3499 3.289407 AGTTAGTACTCCCTACCCGTC 57.711 52.381 0.00 0.00 0.00 4.79
3361 3500 3.746792 AAGTTAGTACTCCCTACCCGT 57.253 47.619 0.00 0.00 31.99 5.28
3362 3501 3.429960 GCAAAGTTAGTACTCCCTACCCG 60.430 52.174 0.00 0.00 31.99 5.28
3363 3502 3.118482 GGCAAAGTTAGTACTCCCTACCC 60.118 52.174 0.00 0.00 31.99 3.69
3364 3503 3.773667 AGGCAAAGTTAGTACTCCCTACC 59.226 47.826 0.00 0.05 31.99 3.18
3365 3504 4.382793 CCAGGCAAAGTTAGTACTCCCTAC 60.383 50.000 0.00 0.00 31.99 3.18
3366 3505 3.773119 CCAGGCAAAGTTAGTACTCCCTA 59.227 47.826 0.00 0.00 31.99 3.53
3367 3506 2.572104 CCAGGCAAAGTTAGTACTCCCT 59.428 50.000 0.00 0.00 31.99 4.20
3368 3507 2.940083 GCCAGGCAAAGTTAGTACTCCC 60.940 54.545 6.55 0.00 31.99 4.30
3369 3508 2.290071 TGCCAGGCAAAGTTAGTACTCC 60.290 50.000 13.33 0.00 34.76 3.85
3370 3509 3.053831 TGCCAGGCAAAGTTAGTACTC 57.946 47.619 13.33 0.00 34.76 2.59
3384 3523 3.204505 CACTTGTTGCATTGCCAGG 57.795 52.632 6.12 0.93 0.00 4.45
3416 3555 8.236586 GCAATGAACTATCATCACTTTTGTACA 58.763 33.333 0.00 0.00 45.60 2.90
3417 3556 8.454106 AGCAATGAACTATCATCACTTTTGTAC 58.546 33.333 0.00 0.00 45.60 2.90
3418 3557 8.565896 AGCAATGAACTATCATCACTTTTGTA 57.434 30.769 0.00 0.00 45.60 2.41
3420 3559 8.671921 AGTAGCAATGAACTATCATCACTTTTG 58.328 33.333 0.00 0.00 45.60 2.44
3424 3563 7.826252 ACAAAGTAGCAATGAACTATCATCACT 59.174 33.333 0.00 0.00 45.60 3.41
3426 3565 9.098355 GTACAAAGTAGCAATGAACTATCATCA 57.902 33.333 0.00 0.00 45.60 3.07
3427 3566 9.098355 TGTACAAAGTAGCAATGAACTATCATC 57.902 33.333 0.00 0.00 45.60 2.92
3443 3582 4.069304 GTGCATTCCAGGTGTACAAAGTA 58.931 43.478 0.00 0.00 33.20 2.24
3449 3588 0.804989 GCAGTGCATTCCAGGTGTAC 59.195 55.000 11.09 0.00 33.15 2.90
3472 3611 5.314923 CACAAATGCAGCTTAATACTGGT 57.685 39.130 0.00 0.00 35.62 4.00
3498 3637 7.539712 ACATCATGAACAGATTAAAGGTACG 57.460 36.000 0.00 0.00 0.00 3.67
3641 3780 6.183360 GGAAGAATCGCTTGTAGTACAGAGTA 60.183 42.308 2.68 0.00 36.83 2.59
3644 3783 4.142227 GGGAAGAATCGCTTGTAGTACAGA 60.142 45.833 2.68 0.00 36.83 3.41
3671 3810 2.621055 ACCAAGCACGTTGAAAGCATAA 59.379 40.909 0.00 0.00 38.60 1.90
3734 3873 3.125316 GCTAAACAGGACAATCGAACTGG 59.875 47.826 0.00 0.00 35.34 4.00
3740 3879 2.066262 ACACGCTAAACAGGACAATCG 58.934 47.619 0.00 0.00 0.00 3.34
3745 3884 2.433868 TCAGACACGCTAAACAGGAC 57.566 50.000 0.00 0.00 0.00 3.85
3761 3900 5.295045 TGCACAAGTATGATACATGCTTCAG 59.705 40.000 19.96 8.44 36.14 3.02
3762 3901 5.184711 TGCACAAGTATGATACATGCTTCA 58.815 37.500 19.96 9.29 36.14 3.02
3763 3902 5.277683 CCTGCACAAGTATGATACATGCTTC 60.278 44.000 19.96 7.44 36.14 3.86
3764 3903 4.577693 CCTGCACAAGTATGATACATGCTT 59.422 41.667 19.96 8.73 36.14 3.91
3797 3936 3.066369 ACAGCATCATACGAGTACACG 57.934 47.619 11.29 11.29 39.31 4.49
3800 3939 3.123804 CCCAACAGCATCATACGAGTAC 58.876 50.000 0.00 0.00 0.00 2.73
3806 3945 2.717639 AGGACCCAACAGCATCATAC 57.282 50.000 0.00 0.00 0.00 2.39
3866 4005 2.557924 GTCCAACACTGGCATGATCAAA 59.442 45.455 0.00 0.00 43.17 2.69
3882 4021 2.622942 GTGATTTCAGCTGGTTGTCCAA 59.377 45.455 15.13 0.00 43.81 3.53
3948 4087 5.221641 ACAACAAATACTCCTGAGCACTGTA 60.222 40.000 0.00 0.00 0.00 2.74
3949 4088 4.067896 CAACAAATACTCCTGAGCACTGT 58.932 43.478 0.00 0.00 0.00 3.55
3950 4089 4.067896 ACAACAAATACTCCTGAGCACTG 58.932 43.478 0.00 0.00 0.00 3.66
3951 4090 4.202357 TGACAACAAATACTCCTGAGCACT 60.202 41.667 0.00 0.00 0.00 4.40
3952 4091 4.065088 TGACAACAAATACTCCTGAGCAC 58.935 43.478 0.00 0.00 0.00 4.40
3953 4092 4.318332 CTGACAACAAATACTCCTGAGCA 58.682 43.478 0.00 0.00 0.00 4.26
3954 4093 3.126000 GCTGACAACAAATACTCCTGAGC 59.874 47.826 0.00 0.00 0.00 4.26
3955 4094 4.573900 AGCTGACAACAAATACTCCTGAG 58.426 43.478 0.00 0.00 0.00 3.35
3956 4095 4.623932 AGCTGACAACAAATACTCCTGA 57.376 40.909 0.00 0.00 0.00 3.86
3957 4096 6.108687 TCATAGCTGACAACAAATACTCCTG 58.891 40.000 0.00 0.00 0.00 3.86
3958 4097 6.299805 TCATAGCTGACAACAAATACTCCT 57.700 37.500 0.00 0.00 0.00 3.69
3959 4098 6.595716 ACTTCATAGCTGACAACAAATACTCC 59.404 38.462 0.00 0.00 0.00 3.85
3960 4099 7.602517 ACTTCATAGCTGACAACAAATACTC 57.397 36.000 0.00 0.00 0.00 2.59
3961 4100 7.573843 GCAACTTCATAGCTGACAACAAATACT 60.574 37.037 0.00 0.00 0.00 2.12
3962 4101 6.524586 GCAACTTCATAGCTGACAACAAATAC 59.475 38.462 0.00 0.00 0.00 1.89
3974 4113 3.960571 ACCAATCTGCAACTTCATAGCT 58.039 40.909 0.00 0.00 0.00 3.32
3980 4119 4.771590 TGATCAACCAATCTGCAACTTC 57.228 40.909 0.00 0.00 0.00 3.01
3983 4122 4.157289 AGACATGATCAACCAATCTGCAAC 59.843 41.667 0.00 0.00 0.00 4.17
3985 4124 3.692593 CAGACATGATCAACCAATCTGCA 59.307 43.478 0.00 0.00 31.24 4.41
3986 4125 3.943381 TCAGACATGATCAACCAATCTGC 59.057 43.478 0.00 0.00 35.25 4.26
3992 4131 6.892485 AGAATATGTCAGACATGATCAACCA 58.108 36.000 24.15 3.72 39.53 3.67
3993 4132 7.637229 CAAGAATATGTCAGACATGATCAACC 58.363 38.462 24.15 7.73 39.53 3.77
3994 4133 7.012138 AGCAAGAATATGTCAGACATGATCAAC 59.988 37.037 24.15 14.26 39.53 3.18
3995 4134 7.012044 CAGCAAGAATATGTCAGACATGATCAA 59.988 37.037 24.15 5.89 39.53 2.57
3996 4135 6.482308 CAGCAAGAATATGTCAGACATGATCA 59.518 38.462 24.15 6.27 39.53 2.92
3997 4136 6.704937 TCAGCAAGAATATGTCAGACATGATC 59.295 38.462 24.15 20.00 39.53 2.92
3998 4137 6.482641 GTCAGCAAGAATATGTCAGACATGAT 59.517 38.462 24.15 13.38 39.53 2.45
3999 4138 5.814188 GTCAGCAAGAATATGTCAGACATGA 59.186 40.000 24.15 9.57 39.53 3.07
4000 4139 5.816258 AGTCAGCAAGAATATGTCAGACATG 59.184 40.000 24.15 10.34 39.53 3.21
4001 4140 5.987098 AGTCAGCAAGAATATGTCAGACAT 58.013 37.500 20.04 20.04 42.35 3.06
4002 4141 5.411831 AGTCAGCAAGAATATGTCAGACA 57.588 39.130 5.50 5.50 0.00 3.41
4003 4142 7.834068 TTTAGTCAGCAAGAATATGTCAGAC 57.166 36.000 0.00 0.00 0.00 3.51
4004 4143 7.877612 TGTTTTAGTCAGCAAGAATATGTCAGA 59.122 33.333 0.00 0.00 0.00 3.27
4005 4144 8.032952 TGTTTTAGTCAGCAAGAATATGTCAG 57.967 34.615 0.00 0.00 0.00 3.51
4006 4145 7.977789 TGTTTTAGTCAGCAAGAATATGTCA 57.022 32.000 0.00 0.00 0.00 3.58
4007 4146 7.483059 GCTTGTTTTAGTCAGCAAGAATATGTC 59.517 37.037 7.24 0.00 40.30 3.06
4008 4147 7.040478 TGCTTGTTTTAGTCAGCAAGAATATGT 60.040 33.333 7.24 0.00 40.30 2.29
4009 4148 7.307694 TGCTTGTTTTAGTCAGCAAGAATATG 58.692 34.615 7.24 0.00 40.30 1.78
4010 4149 7.452880 TGCTTGTTTTAGTCAGCAAGAATAT 57.547 32.000 7.24 0.00 40.30 1.28
4011 4150 6.875948 TGCTTGTTTTAGTCAGCAAGAATA 57.124 33.333 7.24 0.00 40.30 1.75
4012 4151 5.772825 TGCTTGTTTTAGTCAGCAAGAAT 57.227 34.783 7.24 0.00 40.30 2.40
4013 4152 5.067674 ACATGCTTGTTTTAGTCAGCAAGAA 59.932 36.000 0.00 0.00 40.30 2.52
4028 4167 8.623903 CAATATGACCTACATAAACATGCTTGT 58.376 33.333 0.00 0.00 43.47 3.16
4041 4180 9.996554 AATCGTCATTTATCAATATGACCTACA 57.003 29.630 9.01 0.00 44.89 2.74
4043 4182 9.435688 CCAATCGTCATTTATCAATATGACCTA 57.564 33.333 9.01 0.29 44.89 3.08
4045 4184 8.322906 TCCAATCGTCATTTATCAATATGACC 57.677 34.615 9.01 0.00 44.89 4.02
4057 4196 4.526970 AGGCACTATTCCAATCGTCATTT 58.473 39.130 0.00 0.00 36.02 2.32
4068 4207 2.111384 TGACCTCTGAGGCACTATTCC 58.889 52.381 23.43 3.82 41.55 3.01
4069 4208 2.763448 AGTGACCTCTGAGGCACTATTC 59.237 50.000 33.11 20.79 44.80 1.75
4093 4232 7.988737 TGCACACATTATAAGGAAGAAGATTG 58.011 34.615 3.76 0.00 0.00 2.67
4096 4235 6.070251 TCCTGCACACATTATAAGGAAGAAGA 60.070 38.462 3.76 0.00 30.97 2.87
4097 4236 6.115446 TCCTGCACACATTATAAGGAAGAAG 58.885 40.000 3.76 0.00 30.97 2.85
4098 4237 6.061022 TCCTGCACACATTATAAGGAAGAA 57.939 37.500 3.76 0.00 30.97 2.52
4230 4369 3.434641 ACAGCAACAAACGATGATCTCTG 59.565 43.478 0.00 0.00 0.00 3.35
4253 4392 8.982685 CAGATTAGTACAGTGGCAAATGTATAG 58.017 37.037 4.44 0.00 34.60 1.31
4339 4478 0.248336 CGATGTACTCGCGCCTTGTA 60.248 55.000 0.00 0.00 41.14 2.41
4734 4873 5.293324 CCGTCGGATCTTCATGTTTCATTTA 59.707 40.000 4.91 0.00 0.00 1.40
4834 4973 1.078567 CTTCCAGTGAGCTCAGCCC 60.079 63.158 18.89 5.58 0.00 5.19
4835 4974 1.744741 GCTTCCAGTGAGCTCAGCC 60.745 63.158 18.89 6.42 37.18 4.85
4928 5073 1.533731 CCGACGGTAAACAGTTGCAAT 59.466 47.619 5.48 0.00 0.00 3.56
4987 5132 3.934391 CTGACCCGACAGCCGAACC 62.934 68.421 0.00 0.00 41.76 3.62
5003 5148 6.307800 CCTTGTATGTTTAACGCAAAATCCTG 59.692 38.462 0.00 0.00 0.00 3.86
5011 5156 3.186817 CCGAACCTTGTATGTTTAACGCA 59.813 43.478 0.00 0.00 0.00 5.24
5018 5163 2.224426 TGACAGCCGAACCTTGTATGTT 60.224 45.455 0.00 0.00 0.00 2.71
5034 5179 1.363744 GCGAAATCCTGACCTGACAG 58.636 55.000 0.00 0.00 37.61 3.51
5039 5184 1.822990 TCTAACGCGAAATCCTGACCT 59.177 47.619 15.93 0.00 0.00 3.85
5052 5197 3.489785 CCGATTCCTTGTATGTCTAACGC 59.510 47.826 0.00 0.00 0.00 4.84
5166 5507 3.494924 CCCTGATTATGTCGATTCTGGCA 60.495 47.826 0.00 0.00 0.00 4.92
5313 5654 0.463295 AGATGCCCATGCGTTCAGAG 60.463 55.000 0.00 0.00 41.78 3.35
5317 5658 2.409055 TGCAGATGCCCATGCGTTC 61.409 57.895 1.72 0.00 45.54 3.95
5387 5729 8.915871 ACATGTATGCATACAATTTTCTGTTC 57.084 30.769 36.12 9.05 45.40 3.18
5458 5800 2.178912 TACGGAGGCAAACCAGAAAG 57.821 50.000 0.00 0.00 39.06 2.62
5556 5898 6.007936 TCTATGTGCGTGCATAAAGTTTTT 57.992 33.333 0.00 0.00 31.76 1.94
5557 5899 5.621197 TCTATGTGCGTGCATAAAGTTTT 57.379 34.783 0.00 0.00 31.76 2.43
5589 5943 4.576873 TCTGAAAAAGTTTGCACGGATACA 59.423 37.500 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.