Multiple sequence alignment - TraesCS5A01G285400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G285400 chr5A 100.000 5711 0 0 1 5711 493475574 493469864 0.000000e+00 10547.0
1 TraesCS5A01G285400 chr5A 95.652 115 5 0 1691 1805 383832121 383832235 9.770000e-43 185.0
2 TraesCS5A01G285400 chr5A 92.308 65 2 1 1559 1623 372958234 372958295 7.880000e-14 89.8
3 TraesCS5A01G285400 chr5A 89.552 67 3 2 1557 1622 700885877 700885940 1.320000e-11 82.4
4 TraesCS5A01G285400 chr5D 96.710 1702 34 8 1 1700 390275455 390273774 0.000000e+00 2813.0
5 TraesCS5A01G285400 chr5D 95.441 1711 65 7 1804 3503 390273775 390272067 0.000000e+00 2715.0
6 TraesCS5A01G285400 chr5D 91.585 1319 48 13 3853 5157 390271791 390270522 0.000000e+00 1762.0
7 TraesCS5A01G285400 chr5D 84.848 297 22 13 5422 5709 390269752 390269470 1.570000e-70 278.0
8 TraesCS5A01G285400 chr5D 94.167 120 7 0 1696 1815 29168201 29168320 3.510000e-42 183.0
9 TraesCS5A01G285400 chr5B 96.030 1713 48 7 1804 3503 470214735 470213030 0.000000e+00 2769.0
10 TraesCS5A01G285400 chr5B 88.727 1712 75 41 3707 5346 470212982 470211317 0.000000e+00 1984.0
11 TraesCS5A01G285400 chr5B 93.166 995 26 11 727 1700 470215707 470214734 0.000000e+00 1423.0
12 TraesCS5A01G285400 chr5B 84.049 489 69 7 7 487 470264805 470264318 4.030000e-126 462.0
13 TraesCS5A01G285400 chr5B 87.147 319 7 15 5422 5709 470211018 470210703 1.190000e-86 331.0
14 TraesCS5A01G285400 chr5B 93.056 72 5 0 669 740 470215793 470215722 7.830000e-19 106.0
15 TraesCS5A01G285400 chr4D 98.802 167 2 0 3498 3664 357312000 357312166 1.200000e-76 298.0
16 TraesCS5A01G285400 chr3A 99.390 164 1 0 3501 3664 556457473 556457310 1.200000e-76 298.0
17 TraesCS5A01G285400 chr3A 97.647 170 4 0 3498 3667 51751088 51750919 5.600000e-75 292.0
18 TraesCS5A01G285400 chr3A 95.763 118 3 2 1698 1814 651627756 651627872 7.550000e-44 189.0
19 TraesCS5A01G285400 chr3A 95.690 116 3 2 1698 1812 233523254 233523140 9.770000e-43 185.0
20 TraesCS5A01G285400 chr3A 94.167 120 7 0 1686 1805 399421669 399421550 3.510000e-42 183.0
21 TraesCS5A01G285400 chrUn 98.204 167 3 0 3501 3667 115400892 115400726 5.600000e-75 292.0
22 TraesCS5A01G285400 chrUn 95.455 66 0 1 1557 1622 27374773 27374835 1.010000e-17 102.0
23 TraesCS5A01G285400 chr7A 98.171 164 3 0 3501 3664 604387343 604387506 2.600000e-73 287.0
24 TraesCS5A01G285400 chr7A 98.165 109 2 0 1699 1807 25411110 25411002 2.100000e-44 191.0
25 TraesCS5A01G285400 chr7A 87.931 58 7 0 5640 5697 251145657 251145714 1.030000e-07 69.4
26 TraesCS5A01G285400 chr1D 95.055 182 8 1 3489 3669 360358212 360358393 9.370000e-73 285.0
27 TraesCS5A01G285400 chr1D 83.704 135 20 2 517 650 47945927 47946060 6.010000e-25 126.0
28 TraesCS5A01G285400 chr6D 94.565 184 7 3 3501 3681 389700705 389700522 1.210000e-71 281.0
29 TraesCS5A01G285400 chr2D 92.118 203 11 4 3480 3678 18207162 18206961 1.210000e-71 281.0
30 TraesCS5A01G285400 chr7D 94.444 180 10 0 3501 3680 201748209 201748030 1.570000e-70 278.0
31 TraesCS5A01G285400 chr7D 94.872 117 6 0 1698 1814 4020105 4020221 3.510000e-42 183.0
32 TraesCS5A01G285400 chr7D 86.207 58 8 0 5640 5697 235980531 235980588 4.780000e-06 63.9
33 TraesCS5A01G285400 chr2A 98.165 109 2 0 1699 1807 763687569 763687461 2.100000e-44 191.0
34 TraesCS5A01G285400 chr6A 95.652 115 5 0 1692 1806 150231941 150232055 9.770000e-43 185.0
35 TraesCS5A01G285400 chr2B 89.333 75 2 4 1557 1629 771188347 771188277 7.880000e-14 89.8
36 TraesCS5A01G285400 chr4A 90.164 61 2 2 1563 1623 647942107 647942163 6.140000e-10 76.8
37 TraesCS5A01G285400 chr7B 89.091 55 6 0 5643 5697 212407830 212407884 1.030000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G285400 chr5A 493469864 493475574 5710 True 10547.0 10547 100.0000 1 5711 1 chr5A.!!$R1 5710
1 TraesCS5A01G285400 chr5D 390269470 390275455 5985 True 1892.0 2813 92.1460 1 5709 4 chr5D.!!$R1 5708
2 TraesCS5A01G285400 chr5B 470210703 470215793 5090 True 1322.6 2769 91.6252 669 5709 5 chr5B.!!$R2 5040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 989 0.393077 CCCACCTTCGACACTCAACT 59.607 55.0 0.0 0.0 0.00 3.16 F
1714 1774 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.0 0.0 0.0 0.00 4.55 F
1715 1775 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.0 0.0 0.0 0.00 4.30 F
1726 1786 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.0 0.0 0.0 46.65 5.19 F
3514 3594 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.0 0.0 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1836 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.0 0.00 5.19 R
3387 3467 1.738830 CCGCATGCCCTTTGCTTTG 60.739 57.895 13.15 0.0 42.00 2.77 R
3450 3530 1.824852 GCAAATGAAGTTACCAGGGGG 59.175 52.381 0.00 0.0 41.29 5.40 R
3648 3728 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.0 0.00 3.36 R
5009 5228 0.179156 TCCGTTCCTATCGACAACGC 60.179 55.000 12.76 0.0 41.23 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.124570 CCTCCTCATGCCCAACCG 60.125 66.667 0.00 0.00 0.00 4.44
38 39 4.418401 CAACCGGCCATTGCGGTG 62.418 66.667 0.00 0.00 41.41 4.94
119 120 1.153449 CGCAAGGCCCATCGTTCTA 60.153 57.895 0.00 0.00 0.00 2.10
292 293 4.021456 CCAACCCCCTTTACTCAAAATCAC 60.021 45.833 0.00 0.00 0.00 3.06
329 330 9.211485 CTAAAATCCATTGATAATGCCATTTCC 57.789 33.333 0.00 0.00 37.57 3.13
381 382 1.002242 TCCCTCCACCCCCTTGTTTT 61.002 55.000 0.00 0.00 0.00 2.43
387 388 1.146152 CCACCCCCTTGTTTTAGTCCA 59.854 52.381 0.00 0.00 0.00 4.02
497 498 2.639327 AAAGTCCTGCCATTGCCGC 61.639 57.895 0.00 0.00 36.33 6.53
542 543 2.688214 CGGAGAAAGGGGAGAGAGATCA 60.688 54.545 0.00 0.00 0.00 2.92
548 549 6.209026 AGAAAGGGGAGAGAGATCAGTAAAT 58.791 40.000 0.00 0.00 0.00 1.40
564 565 6.484288 TCAGTAAATGAATGTGAGGGTGATT 58.516 36.000 0.00 0.00 34.02 2.57
565 566 7.629157 TCAGTAAATGAATGTGAGGGTGATTA 58.371 34.615 0.00 0.00 34.02 1.75
566 567 8.274322 TCAGTAAATGAATGTGAGGGTGATTAT 58.726 33.333 0.00 0.00 34.02 1.28
567 568 8.347771 CAGTAAATGAATGTGAGGGTGATTATG 58.652 37.037 0.00 0.00 0.00 1.90
568 569 6.720112 AAATGAATGTGAGGGTGATTATGG 57.280 37.500 0.00 0.00 0.00 2.74
569 570 3.554934 TGAATGTGAGGGTGATTATGGC 58.445 45.455 0.00 0.00 0.00 4.40
570 571 2.260844 ATGTGAGGGTGATTATGGCG 57.739 50.000 0.00 0.00 0.00 5.69
571 572 0.463654 TGTGAGGGTGATTATGGCGC 60.464 55.000 0.00 0.00 0.00 6.53
572 573 1.148273 TGAGGGTGATTATGGCGCC 59.852 57.895 22.73 22.73 35.19 6.53
579 580 1.954146 GATTATGGCGCCGCTTCGA 60.954 57.895 23.90 2.33 0.00 3.71
611 612 1.430228 GTCTCGAGAACGCCTCCTC 59.570 63.158 18.55 0.00 38.71 3.71
756 786 4.394920 TCAACAAATAATTCGTCTGAGCCC 59.605 41.667 0.00 0.00 0.00 5.19
781 816 5.948742 AACCAAGGGTTGATGAAAGAAAA 57.051 34.783 0.00 0.00 45.07 2.29
782 817 5.948742 ACCAAGGGTTGATGAAAGAAAAA 57.051 34.783 0.00 0.00 27.29 1.94
783 818 5.917462 ACCAAGGGTTGATGAAAGAAAAAG 58.083 37.500 0.00 0.00 27.29 2.27
952 987 0.761323 TCCCCACCTTCGACACTCAA 60.761 55.000 0.00 0.00 0.00 3.02
953 988 0.602905 CCCCACCTTCGACACTCAAC 60.603 60.000 0.00 0.00 0.00 3.18
954 989 0.393077 CCCACCTTCGACACTCAACT 59.607 55.000 0.00 0.00 0.00 3.16
1144 1200 3.756783 CCCTCCCGTCCCCTCTCT 61.757 72.222 0.00 0.00 0.00 3.10
1149 1205 4.862823 CCGTCCCCTCTCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
1355 1411 3.119495 ACTTCTTGTTTCTGCACACAACC 60.119 43.478 0.00 0.00 0.00 3.77
1700 1760 3.769844 TCCTCTCAGGGAATGTGTTCTAC 59.230 47.826 0.00 0.00 35.59 2.59
1701 1761 3.772025 CCTCTCAGGGAATGTGTTCTACT 59.228 47.826 0.00 0.00 34.68 2.57
1702 1762 4.142049 CCTCTCAGGGAATGTGTTCTACTC 60.142 50.000 0.00 0.00 34.68 2.59
1703 1763 3.769844 TCTCAGGGAATGTGTTCTACTCC 59.230 47.826 0.00 0.00 34.68 3.85
1704 1764 2.838202 TCAGGGAATGTGTTCTACTCCC 59.162 50.000 0.00 0.00 34.68 4.30
1705 1765 2.840651 CAGGGAATGTGTTCTACTCCCT 59.159 50.000 1.97 1.97 46.26 4.20
1706 1766 3.108376 AGGGAATGTGTTCTACTCCCTC 58.892 50.000 1.97 0.00 42.08 4.30
1707 1767 2.170817 GGGAATGTGTTCTACTCCCTCC 59.829 54.545 0.00 0.00 34.68 4.30
1708 1768 2.159085 GGAATGTGTTCTACTCCCTCCG 60.159 54.545 0.00 0.00 34.68 4.63
1709 1769 2.233305 ATGTGTTCTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
1710 1770 2.005370 TGTGTTCTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
1711 1771 1.891150 TGTGTTCTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
1712 1772 1.204231 GTGTTCTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
1713 1773 0.455005 GTTCTACTCCCTCCGTTCCG 59.545 60.000 0.00 0.00 0.00 4.30
1714 1774 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
1715 1775 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
1716 1776 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
1717 1777 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1718 1778 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1719 1779 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1720 1780 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1721 1781 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
1723 1783 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
1724 1784 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
1725 1785 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
1726 1786 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
1727 1787 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
1728 1788 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
1729 1789 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
1730 1790 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
1731 1791 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
1732 1792 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
1733 1793 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
1734 1794 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
1735 1795 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1736 1796 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1737 1797 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1738 1798 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1739 1799 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1740 1800 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
1741 1801 4.037565 ACTCGTCGCAGAAATGGATGTATA 59.962 41.667 0.00 0.00 39.69 1.47
1742 1802 5.134202 TCGTCGCAGAAATGGATGTATAT 57.866 39.130 0.00 0.00 39.69 0.86
1743 1803 6.072119 ACTCGTCGCAGAAATGGATGTATATA 60.072 38.462 0.00 0.00 39.69 0.86
1744 1804 6.322491 TCGTCGCAGAAATGGATGTATATAG 58.678 40.000 0.00 0.00 39.69 1.31
1745 1805 6.150474 TCGTCGCAGAAATGGATGTATATAGA 59.850 38.462 0.00 0.00 39.69 1.98
1746 1806 6.975197 CGTCGCAGAAATGGATGTATATAGAT 59.025 38.462 0.00 0.00 39.69 1.98
1747 1807 7.043788 CGTCGCAGAAATGGATGTATATAGATG 60.044 40.741 0.00 0.00 39.69 2.90
1748 1808 7.761704 GTCGCAGAAATGGATGTATATAGATGT 59.238 37.037 0.00 0.00 39.69 3.06
1749 1809 8.966868 TCGCAGAAATGGATGTATATAGATGTA 58.033 33.333 0.00 0.00 0.00 2.29
1750 1810 9.755804 CGCAGAAATGGATGTATATAGATGTAT 57.244 33.333 0.00 0.00 0.00 2.29
1778 1838 7.251704 AGTTCTAGATACATCCATTTTTGCG 57.748 36.000 0.00 0.00 0.00 4.85
1779 1839 7.047891 AGTTCTAGATACATCCATTTTTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
1780 1840 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
1781 1841 4.536364 AGATACATCCATTTTTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
1782 1842 4.188462 AGATACATCCATTTTTGCGACGA 58.812 39.130 0.00 0.00 0.00 4.20
1783 1843 2.900122 ACATCCATTTTTGCGACGAG 57.100 45.000 0.00 0.00 0.00 4.18
1784 1844 2.151202 ACATCCATTTTTGCGACGAGT 58.849 42.857 0.00 0.00 0.00 4.18
1785 1845 3.331150 ACATCCATTTTTGCGACGAGTA 58.669 40.909 0.00 0.00 0.00 2.59
1786 1846 3.749088 ACATCCATTTTTGCGACGAGTAA 59.251 39.130 0.00 0.00 0.00 2.24
1787 1847 4.394920 ACATCCATTTTTGCGACGAGTAAT 59.605 37.500 0.00 0.00 0.00 1.89
1788 1848 5.106317 ACATCCATTTTTGCGACGAGTAATT 60.106 36.000 0.00 0.00 0.00 1.40
1789 1849 5.365403 TCCATTTTTGCGACGAGTAATTT 57.635 34.783 0.00 0.00 0.00 1.82
1790 1850 5.150683 TCCATTTTTGCGACGAGTAATTTG 58.849 37.500 0.00 0.00 0.00 2.32
1791 1851 4.323336 CCATTTTTGCGACGAGTAATTTGG 59.677 41.667 0.00 0.00 0.00 3.28
1792 1852 4.815040 TTTTTGCGACGAGTAATTTGGA 57.185 36.364 0.00 0.00 0.00 3.53
1793 1853 4.815040 TTTTGCGACGAGTAATTTGGAA 57.185 36.364 0.00 0.00 0.00 3.53
1794 1854 3.799137 TTGCGACGAGTAATTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
1795 1855 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1796 1856 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
1797 1857 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1798 1858 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1799 1859 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1800 1860 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1801 1861 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1802 1862 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1803 1863 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1804 1864 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2094 2154 8.225416 TCCTTATCTCTTAGTATGTAGGCAGAA 58.775 37.037 0.00 0.00 0.00 3.02
2265 2325 7.978982 TGATTTTTGTTTTTAACCCACACATG 58.021 30.769 0.00 0.00 0.00 3.21
2302 2362 2.354805 GCTGTTCGACCTATGGACCTTT 60.355 50.000 0.00 0.00 0.00 3.11
2305 2365 4.346730 TGTTCGACCTATGGACCTTTCTA 58.653 43.478 0.00 0.00 0.00 2.10
2338 2398 7.408756 TTGGCTACTTTCGTTAGATACCTTA 57.591 36.000 0.00 0.00 0.00 2.69
2458 2524 3.561725 GCCTGATAGCCATGTGACTAAAC 59.438 47.826 0.00 0.00 0.00 2.01
2522 2588 7.872483 CACATTTTGCCTACTTAAAGGAATGTT 59.128 33.333 8.17 0.00 38.53 2.71
2622 2689 3.498661 GGAGATGGTGTTCCCTCTGTTTT 60.499 47.826 0.00 0.00 38.50 2.43
2653 2720 3.866651 AGATCACACACCTTGAGCATAC 58.133 45.455 0.00 0.00 31.56 2.39
2669 2736 5.203060 AGCATACGGGAGAGAAATTAGAC 57.797 43.478 0.00 0.00 0.00 2.59
2682 2749 6.652900 AGAGAAATTAGACACCTTCTTCAAGC 59.347 38.462 0.00 0.00 35.55 4.01
3134 3213 9.471702 AATATTCACTTTGATGGATTCTGTTCT 57.528 29.630 0.00 0.00 0.00 3.01
3216 3295 3.955471 TCTCATGGTCACAAATCCTTCC 58.045 45.455 0.00 0.00 0.00 3.46
3279 3358 7.276658 GGATTCACATTCCATATAGAAGTAGCG 59.723 40.741 0.00 0.00 33.21 4.26
3356 3436 2.171003 GCCTTATGGAAAGCTTGGTGT 58.829 47.619 0.00 0.00 34.57 4.16
3377 3457 5.808030 GTGTAGATAACTGGAAAGAGCTCAC 59.192 44.000 17.77 6.76 0.00 3.51
3387 3467 1.831580 AAGAGCTCACCCAAAGCATC 58.168 50.000 17.77 0.00 42.35 3.91
3471 3551 1.824852 CCCCTGGTAACTTCATTTGCC 59.175 52.381 0.00 0.00 37.61 4.52
3506 3586 7.865706 ATTCTTGTTATCATGTTGTACTCCC 57.134 36.000 0.00 0.00 0.00 4.30
3507 3587 6.620877 TCTTGTTATCATGTTGTACTCCCT 57.379 37.500 0.00 0.00 0.00 4.20
3508 3588 6.640518 TCTTGTTATCATGTTGTACTCCCTC 58.359 40.000 0.00 0.00 0.00 4.30
3509 3589 5.353394 TGTTATCATGTTGTACTCCCTCC 57.647 43.478 0.00 0.00 0.00 4.30
3510 3590 4.142026 TGTTATCATGTTGTACTCCCTCCG 60.142 45.833 0.00 0.00 0.00 4.63
3511 3591 1.933021 TCATGTTGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
3512 3592 2.253610 TCATGTTGTACTCCCTCCGTT 58.746 47.619 0.00 0.00 0.00 4.44
3513 3593 2.232941 TCATGTTGTACTCCCTCCGTTC 59.767 50.000 0.00 0.00 0.00 3.95
3514 3594 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
3515 3595 1.264295 GTTGTACTCCCTCCGTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
3516 3596 2.225091 TGTTGTACTCCCTCCGTTCCTA 60.225 50.000 0.00 0.00 0.00 2.94
3517 3597 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
3518 3598 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3519 3599 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3520 3600 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3521 3601 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3522 3602 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3523 3603 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3524 3604 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3525 3605 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3526 3606 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3527 3607 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3528 3608 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3529 3609 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3530 3610 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3531 3611 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3532 3612 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3533 3613 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3534 3614 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3547 3627 8.924511 TTGTCTTTCTAGAGATTTCAAATGGT 57.075 30.769 0.00 0.00 0.00 3.55
3548 3628 8.924511 TGTCTTTCTAGAGATTTCAAATGGTT 57.075 30.769 0.00 0.00 0.00 3.67
3551 3631 9.449719 TCTTTCTAGAGATTTCAAATGGTTACC 57.550 33.333 0.00 0.00 0.00 2.85
3552 3632 9.231297 CTTTCTAGAGATTTCAAATGGTTACCA 57.769 33.333 6.53 6.53 38.19 3.25
3553 3633 8.561738 TTCTAGAGATTTCAAATGGTTACCAC 57.438 34.615 6.10 0.00 35.80 4.16
3554 3634 7.685481 TCTAGAGATTTCAAATGGTTACCACA 58.315 34.615 6.10 0.00 35.80 4.17
3555 3635 8.328758 TCTAGAGATTTCAAATGGTTACCACAT 58.671 33.333 6.10 0.00 35.80 3.21
3556 3636 9.613428 CTAGAGATTTCAAATGGTTACCACATA 57.387 33.333 6.10 0.00 35.80 2.29
3557 3637 8.281212 AGAGATTTCAAATGGTTACCACATAC 57.719 34.615 6.10 0.00 35.80 2.39
3558 3638 7.065803 AGAGATTTCAAATGGTTACCACATACG 59.934 37.037 6.10 0.00 35.80 3.06
3559 3639 5.630661 TTTCAAATGGTTACCACATACGG 57.369 39.130 6.10 0.00 35.80 4.02
3560 3640 4.554960 TCAAATGGTTACCACATACGGA 57.445 40.909 6.10 0.00 35.80 4.69
3561 3641 5.105567 TCAAATGGTTACCACATACGGAT 57.894 39.130 6.10 0.00 35.80 4.18
3562 3642 4.878971 TCAAATGGTTACCACATACGGATG 59.121 41.667 6.10 5.94 35.80 3.51
3564 3644 5.617528 AATGGTTACCACATACGGATGTA 57.382 39.130 14.23 0.00 44.82 2.29
3565 3645 5.818678 ATGGTTACCACATACGGATGTAT 57.181 39.130 14.23 7.46 44.82 2.29
3566 3646 6.921486 ATGGTTACCACATACGGATGTATA 57.079 37.500 14.23 6.38 44.82 1.47
3567 3647 6.921486 TGGTTACCACATACGGATGTATAT 57.079 37.500 14.23 4.37 44.82 0.86
3568 3648 8.598202 ATGGTTACCACATACGGATGTATATA 57.402 34.615 14.23 3.33 44.82 0.86
3569 3649 8.058667 TGGTTACCACATACGGATGTATATAG 57.941 38.462 14.23 0.00 44.82 1.31
3570 3650 7.889600 TGGTTACCACATACGGATGTATATAGA 59.110 37.037 14.23 0.00 44.82 1.98
3571 3651 8.186821 GGTTACCACATACGGATGTATATAGAC 58.813 40.741 14.23 7.65 44.82 2.59
3572 3652 8.733458 GTTACCACATACGGATGTATATAGACA 58.267 37.037 14.23 2.07 44.82 3.41
3573 3653 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3575 3655 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3604 3684 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3605 3685 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3606 3686 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3607 3687 3.942829 AGATTCACTCATTTTGCTCCGA 58.057 40.909 0.00 0.00 0.00 4.55
3608 3688 4.326826 AGATTCACTCATTTTGCTCCGAA 58.673 39.130 0.00 0.00 0.00 4.30
3609 3689 4.946157 AGATTCACTCATTTTGCTCCGAAT 59.054 37.500 0.00 0.00 0.00 3.34
3610 3690 4.424061 TTCACTCATTTTGCTCCGAATG 57.576 40.909 0.00 0.00 35.18 2.67
3611 3691 3.411446 TCACTCATTTTGCTCCGAATGT 58.589 40.909 0.00 0.00 35.35 2.71
3612 3692 4.574892 TCACTCATTTTGCTCCGAATGTA 58.425 39.130 0.00 0.00 35.35 2.29
3613 3693 4.631377 TCACTCATTTTGCTCCGAATGTAG 59.369 41.667 0.00 0.00 35.35 2.74
3614 3694 4.393062 CACTCATTTTGCTCCGAATGTAGT 59.607 41.667 0.00 0.00 35.35 2.73
3615 3695 4.631813 ACTCATTTTGCTCCGAATGTAGTC 59.368 41.667 0.00 0.00 35.35 2.59
3616 3696 4.574892 TCATTTTGCTCCGAATGTAGTCA 58.425 39.130 0.00 0.00 35.35 3.41
3617 3697 4.391830 TCATTTTGCTCCGAATGTAGTCAC 59.608 41.667 0.00 0.00 35.35 3.67
3618 3698 3.678056 TTTGCTCCGAATGTAGTCACT 57.322 42.857 0.00 0.00 0.00 3.41
3619 3699 3.678056 TTGCTCCGAATGTAGTCACTT 57.322 42.857 0.00 0.00 0.00 3.16
3620 3700 2.959516 TGCTCCGAATGTAGTCACTTG 58.040 47.619 0.00 0.00 0.00 3.16
3621 3701 2.299013 TGCTCCGAATGTAGTCACTTGT 59.701 45.455 0.00 0.00 0.00 3.16
3622 3702 3.244078 TGCTCCGAATGTAGTCACTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
3623 3703 3.123621 GCTCCGAATGTAGTCACTTGTTG 59.876 47.826 0.00 0.00 0.00 3.33
3624 3704 4.556233 CTCCGAATGTAGTCACTTGTTGA 58.444 43.478 0.00 0.00 0.00 3.18
3625 3705 4.951254 TCCGAATGTAGTCACTTGTTGAA 58.049 39.130 0.00 0.00 35.39 2.69
3626 3706 5.361427 TCCGAATGTAGTCACTTGTTGAAA 58.639 37.500 0.00 0.00 35.39 2.69
3627 3707 5.235616 TCCGAATGTAGTCACTTGTTGAAAC 59.764 40.000 0.00 0.00 35.39 2.78
3628 3708 5.440685 CGAATGTAGTCACTTGTTGAAACC 58.559 41.667 0.00 0.00 35.39 3.27
3629 3709 5.236478 CGAATGTAGTCACTTGTTGAAACCT 59.764 40.000 0.00 0.00 35.39 3.50
3630 3710 6.564125 CGAATGTAGTCACTTGTTGAAACCTC 60.564 42.308 0.00 0.00 35.39 3.85
3631 3711 5.353394 TGTAGTCACTTGTTGAAACCTCT 57.647 39.130 0.00 0.00 35.39 3.69
3632 3712 6.474140 TGTAGTCACTTGTTGAAACCTCTA 57.526 37.500 0.00 0.00 35.39 2.43
3633 3713 6.880484 TGTAGTCACTTGTTGAAACCTCTAA 58.120 36.000 0.00 0.00 35.39 2.10
3634 3714 7.332557 TGTAGTCACTTGTTGAAACCTCTAAA 58.667 34.615 0.00 0.00 35.39 1.85
3635 3715 7.825270 TGTAGTCACTTGTTGAAACCTCTAAAA 59.175 33.333 0.00 0.00 35.39 1.52
3636 3716 7.696992 AGTCACTTGTTGAAACCTCTAAAAA 57.303 32.000 0.00 0.00 35.39 1.94
3637 3717 7.762382 AGTCACTTGTTGAAACCTCTAAAAAG 58.238 34.615 0.00 0.00 35.39 2.27
3638 3718 7.610305 AGTCACTTGTTGAAACCTCTAAAAAGA 59.390 33.333 0.00 0.00 35.39 2.52
3639 3719 7.696872 GTCACTTGTTGAAACCTCTAAAAAGAC 59.303 37.037 0.00 0.00 35.39 3.01
3640 3720 7.392113 TCACTTGTTGAAACCTCTAAAAAGACA 59.608 33.333 0.00 0.00 0.00 3.41
3641 3721 8.026607 CACTTGTTGAAACCTCTAAAAAGACAA 58.973 33.333 0.00 0.00 0.00 3.18
3642 3722 8.581578 ACTTGTTGAAACCTCTAAAAAGACAAA 58.418 29.630 0.00 0.00 0.00 2.83
3643 3723 9.586435 CTTGTTGAAACCTCTAAAAAGACAAAT 57.414 29.630 0.00 0.00 0.00 2.32
3658 3738 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3659 3739 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3660 3740 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3661 3741 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3664 3744 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3669 3749 3.924922 AGGAACGGAGGGAGTACATTAT 58.075 45.455 0.00 0.00 0.00 1.28
3760 3846 5.509972 TCGTATGCATTTATTTTCAACGTGC 59.490 36.000 3.54 0.00 0.00 5.34
3806 3892 5.183904 GCATAAAGTTCATTGTGTCCTCCTT 59.816 40.000 0.00 0.00 0.00 3.36
3808 3894 7.661040 CATAAAGTTCATTGTGTCCTCCTTTT 58.339 34.615 0.00 0.00 0.00 2.27
3829 3915 0.107831 TGTCCAGAACTGAAACCCCG 59.892 55.000 3.19 0.00 0.00 5.73
3912 4077 3.773119 ACTCGTATACTGGACCATTGGTT 59.227 43.478 10.29 0.00 35.25 3.67
3923 4088 3.768757 GGACCATTGGTTCATTGATCCAA 59.231 43.478 24.45 24.45 42.96 3.53
4024 4189 0.313672 TTGTTCAGGCGCATTTCACC 59.686 50.000 10.83 0.00 0.00 4.02
4097 4264 1.927487 TGCAGATGAATGGCCTTTGT 58.073 45.000 8.91 0.00 0.00 2.83
4098 4265 2.250031 TGCAGATGAATGGCCTTTGTT 58.750 42.857 8.91 0.00 0.00 2.83
4099 4266 3.429492 TGCAGATGAATGGCCTTTGTTA 58.571 40.909 8.91 0.00 0.00 2.41
4100 4267 4.025360 TGCAGATGAATGGCCTTTGTTAT 58.975 39.130 8.91 0.68 0.00 1.89
4101 4268 4.142116 TGCAGATGAATGGCCTTTGTTATG 60.142 41.667 8.91 4.75 0.00 1.90
4102 4269 4.098349 GCAGATGAATGGCCTTTGTTATGA 59.902 41.667 8.91 0.00 0.00 2.15
4103 4270 5.394443 GCAGATGAATGGCCTTTGTTATGAA 60.394 40.000 8.91 0.00 0.00 2.57
4104 4271 6.038356 CAGATGAATGGCCTTTGTTATGAAC 58.962 40.000 8.91 0.00 0.00 3.18
4293 4464 5.738619 GGTATCCACCCATTTTGTTTTCT 57.261 39.130 0.00 0.00 39.11 2.52
4341 4515 8.282982 TCTTATCTAGGATAGTTCTGACCACTT 58.717 37.037 0.00 0.00 40.38 3.16
4342 4516 8.840200 TTATCTAGGATAGTTCTGACCACTTT 57.160 34.615 0.00 0.00 40.38 2.66
4343 4517 7.741554 ATCTAGGATAGTTCTGACCACTTTT 57.258 36.000 0.00 0.00 40.38 2.27
4344 4518 7.554959 TCTAGGATAGTTCTGACCACTTTTT 57.445 36.000 0.00 0.00 40.38 1.94
4386 4561 4.956700 CACTTCCTCTCTGTAACCTGGATA 59.043 45.833 0.00 0.00 0.00 2.59
4466 4643 4.574421 CAGTTACAATGCCGATCCATGTTA 59.426 41.667 0.00 0.00 0.00 2.41
4563 4758 1.102809 TGTGTGTGTAGGTCGACGGT 61.103 55.000 9.92 1.52 0.00 4.83
4883 5095 7.571786 TGGTAACAGTGACATGAATGGCATAC 61.572 42.308 0.00 1.02 46.28 2.39
4884 5096 9.641135 TGGTAACAGTGACATGAATGGCATACT 62.641 40.741 0.00 0.00 46.28 2.12
4899 5111 6.419484 TGGCATACTACTACTACTACCGTA 57.581 41.667 0.00 0.00 0.00 4.02
4900 5112 7.009179 TGGCATACTACTACTACTACCGTAT 57.991 40.000 0.00 0.00 0.00 3.06
4958 5170 3.543680 TTGGATCTGATTCCTCGTTCC 57.456 47.619 0.00 0.00 36.68 3.62
4959 5171 1.762957 TGGATCTGATTCCTCGTTCCC 59.237 52.381 0.00 0.00 36.68 3.97
4960 5172 2.043227 GGATCTGATTCCTCGTTCCCT 58.957 52.381 0.00 0.00 32.68 4.20
4961 5173 2.036604 GGATCTGATTCCTCGTTCCCTC 59.963 54.545 0.00 0.00 32.68 4.30
5024 5243 1.074319 GCACGCGTTGTCGATAGGAA 61.074 55.000 10.22 0.00 39.71 3.36
5039 5258 4.501571 CGATAGGAACGGAATCAGATTGGT 60.502 45.833 0.00 0.00 0.00 3.67
5049 5268 2.630889 TCAGATTGGTCCTGGTCTCT 57.369 50.000 0.00 0.00 32.73 3.10
5146 5389 1.086696 CCTAAACTGGGTCACGCATG 58.913 55.000 0.00 0.00 0.00 4.06
5164 5407 1.660167 TGCTCATGCTACTGATGCAC 58.340 50.000 0.00 0.00 43.59 4.57
5183 5640 4.701651 TGCACCCGTATTATATACGCTACT 59.298 41.667 12.43 0.00 39.38 2.57
5184 5641 5.879777 TGCACCCGTATTATATACGCTACTA 59.120 40.000 12.43 0.00 39.38 1.82
5185 5642 6.183360 TGCACCCGTATTATATACGCTACTAC 60.183 42.308 12.43 2.52 39.38 2.73
5186 5643 6.037610 GCACCCGTATTATATACGCTACTACT 59.962 42.308 12.43 0.00 39.38 2.57
5204 5662 3.495670 ACTTGCTGATAGACGACAGAC 57.504 47.619 0.00 0.00 36.38 3.51
5205 5663 3.085533 ACTTGCTGATAGACGACAGACT 58.914 45.455 0.00 0.00 36.38 3.24
5351 5821 4.681978 GAGGTGTTCCTGCGCCGT 62.682 66.667 4.18 0.00 45.24 5.68
5352 5822 4.988598 AGGTGTTCCTGCGCCGTG 62.989 66.667 4.18 0.00 43.33 4.94
5353 5823 4.980805 GGTGTTCCTGCGCCGTGA 62.981 66.667 4.18 0.00 0.00 4.35
5354 5824 3.712881 GTGTTCCTGCGCCGTGAC 61.713 66.667 4.18 0.00 0.00 3.67
5355 5825 3.923864 TGTTCCTGCGCCGTGACT 61.924 61.111 4.18 0.00 0.00 3.41
5356 5826 3.112709 GTTCCTGCGCCGTGACTC 61.113 66.667 4.18 0.00 0.00 3.36
5357 5827 4.373116 TTCCTGCGCCGTGACTCC 62.373 66.667 4.18 0.00 0.00 3.85
5360 5830 4.457496 CTGCGCCGTGACTCCCAT 62.457 66.667 4.18 0.00 0.00 4.00
5361 5831 4.451150 TGCGCCGTGACTCCCATC 62.451 66.667 4.18 0.00 0.00 3.51
5363 5833 4.530857 CGCCGTGACTCCCATCCC 62.531 72.222 0.00 0.00 0.00 3.85
5364 5834 4.176752 GCCGTGACTCCCATCCCC 62.177 72.222 0.00 0.00 0.00 4.81
5365 5835 3.849951 CCGTGACTCCCATCCCCG 61.850 72.222 0.00 0.00 0.00 5.73
5366 5836 3.075005 CGTGACTCCCATCCCCGT 61.075 66.667 0.00 0.00 0.00 5.28
5367 5837 2.901042 GTGACTCCCATCCCCGTC 59.099 66.667 0.00 0.00 0.00 4.79
5368 5838 2.758327 TGACTCCCATCCCCGTCG 60.758 66.667 0.00 0.00 0.00 5.12
5369 5839 3.537874 GACTCCCATCCCCGTCGG 61.538 72.222 3.60 3.60 0.00 4.79
5398 5868 4.035102 GCCACTCCCCCAGTCCAC 62.035 72.222 0.00 0.00 30.26 4.02
5399 5869 3.706373 CCACTCCCCCAGTCCACG 61.706 72.222 0.00 0.00 30.26 4.94
5400 5870 3.706373 CACTCCCCCAGTCCACGG 61.706 72.222 0.00 0.00 30.26 4.94
5420 6182 2.516930 CACGCACCCATCCCATCC 60.517 66.667 0.00 0.00 0.00 3.51
5544 6306 1.079543 CGGGGAGAACAGTCAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
5545 6307 1.298014 GGGGAGAACAGTCAGCAGG 59.702 63.158 0.00 0.00 0.00 4.85
5546 6308 1.194781 GGGGAGAACAGTCAGCAGGA 61.195 60.000 0.00 0.00 0.00 3.86
5571 6367 2.071844 GAGCGACCGAATCCCGATCA 62.072 60.000 0.00 0.00 41.76 2.92
5620 6426 4.477975 GACGACCGGAGTCCGCTG 62.478 72.222 26.60 18.59 46.86 5.18
5622 6428 4.477975 CGACCGGAGTCCGCTGAC 62.478 72.222 26.60 12.56 46.86 3.51
5623 6429 3.371063 GACCGGAGTCCGCTGACA 61.371 66.667 26.60 0.00 46.86 3.58
5624 6430 3.628280 GACCGGAGTCCGCTGACAC 62.628 68.421 26.60 8.78 46.86 3.67
5625 6431 4.436998 CCGGAGTCCGCTGACACC 62.437 72.222 26.60 13.51 46.86 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.458163 TGGTCATCCTCCGACGCC 61.458 66.667 0.00 0.00 34.04 5.68
101 102 1.153449 TAGAACGATGGGCCTTGCG 60.153 57.895 4.53 8.43 0.00 4.85
119 120 5.042463 TCTCCTCTACATCATCTTCGTCT 57.958 43.478 0.00 0.00 0.00 4.18
128 129 4.222366 GCATCCATCATCTCCTCTACATCA 59.778 45.833 0.00 0.00 0.00 3.07
133 134 2.566279 GCAGCATCCATCATCTCCTCTA 59.434 50.000 0.00 0.00 0.00 2.43
134 135 1.348366 GCAGCATCCATCATCTCCTCT 59.652 52.381 0.00 0.00 0.00 3.69
292 293 5.825679 TCAATGGATTTTAGGGTTCATACGG 59.174 40.000 0.00 0.00 0.00 4.02
329 330 8.556517 TTCACATTCGATTATGTAGTAGTTCG 57.443 34.615 2.50 0.00 36.64 3.95
381 382 3.101437 TCAAGCGTTAGGGATTGGACTA 58.899 45.455 0.00 0.00 34.24 2.59
387 388 5.418840 ACATTTGATTCAAGCGTTAGGGATT 59.581 36.000 0.00 0.00 0.00 3.01
455 456 0.614697 ATGGTTGTAAGCCCTTGCCC 60.615 55.000 0.00 0.00 38.69 5.36
477 478 1.243342 CGGCAATGGCAGGACTTTGA 61.243 55.000 7.75 0.00 43.71 2.69
505 506 3.222855 CGCTCTCCCCGCTCTCAT 61.223 66.667 0.00 0.00 0.00 2.90
542 543 7.503566 CCATAATCACCCTCACATTCATTTACT 59.496 37.037 0.00 0.00 0.00 2.24
548 549 3.554934 GCCATAATCACCCTCACATTCA 58.445 45.455 0.00 0.00 0.00 2.57
564 565 2.566057 TTTCTCGAAGCGGCGCCATA 62.566 55.000 30.40 11.02 0.00 2.74
565 566 3.950794 TTTCTCGAAGCGGCGCCAT 62.951 57.895 30.40 18.82 0.00 4.40
566 567 4.673298 TTTCTCGAAGCGGCGCCA 62.673 61.111 30.40 9.36 0.00 5.69
567 568 4.148645 GTTTCTCGAAGCGGCGCC 62.149 66.667 30.40 19.07 0.00 6.53
568 569 2.950172 TTGTTTCTCGAAGCGGCGC 61.950 57.895 26.86 26.86 0.00 6.53
569 570 1.154654 GTTGTTTCTCGAAGCGGCG 60.155 57.895 0.51 0.51 0.00 6.46
570 571 1.154654 CGTTGTTTCTCGAAGCGGC 60.155 57.895 0.00 0.00 0.00 6.53
571 572 0.111266 CACGTTGTTTCTCGAAGCGG 60.111 55.000 0.00 0.00 0.00 5.52
572 573 0.850217 TCACGTTGTTTCTCGAAGCG 59.150 50.000 0.00 0.00 0.00 4.68
579 580 1.064505 TCGAGACGTCACGTTGTTTCT 59.935 47.619 29.58 0.00 41.37 2.52
666 667 3.997021 GGGGAAATACATATGAGCACTCG 59.003 47.826 10.38 0.00 0.00 4.18
674 675 7.822161 TGTGAAATGAGGGGAAATACATATG 57.178 36.000 0.00 0.00 0.00 1.78
677 678 5.422012 GGTTGTGAAATGAGGGGAAATACAT 59.578 40.000 0.00 0.00 0.00 2.29
952 987 1.341679 TGGTCGCTGGATGGTAGTAGT 60.342 52.381 0.00 0.00 0.00 2.73
953 988 1.067212 GTGGTCGCTGGATGGTAGTAG 59.933 57.143 0.00 0.00 0.00 2.57
954 989 1.108776 GTGGTCGCTGGATGGTAGTA 58.891 55.000 0.00 0.00 0.00 1.82
1149 1205 2.446435 CAGGGTTAGGAAACATGGTGG 58.554 52.381 0.00 0.00 37.34 4.61
1150 1206 1.818674 GCAGGGTTAGGAAACATGGTG 59.181 52.381 0.00 0.00 37.34 4.17
1205 1261 1.776662 CGGTCCAATCCTACTCCTGA 58.223 55.000 0.00 0.00 0.00 3.86
1713 1773 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
1714 1774 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1715 1775 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1716 1776 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1717 1777 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1718 1778 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1719 1779 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1720 1780 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1721 1781 6.322491 TCTATATACATCCATTTCTGCGACG 58.678 40.000 0.00 0.00 0.00 5.12
1722 1782 7.761704 ACATCTATATACATCCATTTCTGCGAC 59.238 37.037 0.00 0.00 0.00 5.19
1723 1783 7.840931 ACATCTATATACATCCATTTCTGCGA 58.159 34.615 0.00 0.00 0.00 5.10
1724 1784 9.755804 ATACATCTATATACATCCATTTCTGCG 57.244 33.333 0.00 0.00 0.00 5.18
1752 1812 8.826710 CGCAAAAATGGATGTATCTAGAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
1753 1813 8.201464 TCGCAAAAATGGATGTATCTAGAACTA 58.799 33.333 0.00 0.00 0.00 2.24
1754 1814 7.011482 GTCGCAAAAATGGATGTATCTAGAACT 59.989 37.037 0.00 0.00 0.00 3.01
1755 1815 7.126398 GTCGCAAAAATGGATGTATCTAGAAC 58.874 38.462 0.00 0.00 0.00 3.01
1756 1816 6.019075 CGTCGCAAAAATGGATGTATCTAGAA 60.019 38.462 0.00 0.00 0.00 2.10
1757 1817 5.462068 CGTCGCAAAAATGGATGTATCTAGA 59.538 40.000 0.00 0.00 0.00 2.43
1758 1818 5.462068 TCGTCGCAAAAATGGATGTATCTAG 59.538 40.000 0.00 0.00 0.00 2.43
1759 1819 5.353111 TCGTCGCAAAAATGGATGTATCTA 58.647 37.500 0.00 0.00 0.00 1.98
1760 1820 4.188462 TCGTCGCAAAAATGGATGTATCT 58.812 39.130 0.00 0.00 0.00 1.98
1761 1821 4.034048 ACTCGTCGCAAAAATGGATGTATC 59.966 41.667 0.00 0.00 0.00 2.24
1762 1822 3.938963 ACTCGTCGCAAAAATGGATGTAT 59.061 39.130 0.00 0.00 0.00 2.29
1763 1823 3.331150 ACTCGTCGCAAAAATGGATGTA 58.669 40.909 0.00 0.00 0.00 2.29
1764 1824 2.151202 ACTCGTCGCAAAAATGGATGT 58.849 42.857 0.00 0.00 0.00 3.06
1765 1825 2.900122 ACTCGTCGCAAAAATGGATG 57.100 45.000 0.00 0.00 0.00 3.51
1766 1826 5.560966 AATTACTCGTCGCAAAAATGGAT 57.439 34.783 0.00 0.00 0.00 3.41
1767 1827 5.150683 CAAATTACTCGTCGCAAAAATGGA 58.849 37.500 0.00 0.00 0.00 3.41
1768 1828 4.323336 CCAAATTACTCGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
1769 1829 5.150683 TCCAAATTACTCGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
1770 1830 5.365403 TCCAAATTACTCGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
1771 1831 4.815040 TCCAAATTACTCGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
1772 1832 4.529446 GTTCCAAATTACTCGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
1773 1833 3.363182 CGTTCCAAATTACTCGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
1774 1834 2.156117 CGTTCCAAATTACTCGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
1775 1835 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1776 1836 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1777 1837 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1778 1838 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1779 1839 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1780 1840 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1781 1841 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1782 1842 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1783 1843 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1784 1844 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1785 1845 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1786 1846 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1787 1847 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1788 1848 2.042162 ACTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
1789 1849 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
1790 1850 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
1791 1851 6.462552 AATTAACTACTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 0.00 3.95
1792 1852 6.864151 AAATTAACTACTACTCCCTCCGTT 57.136 37.500 0.00 0.00 0.00 4.44
1793 1853 6.212187 ACAAAATTAACTACTACTCCCTCCGT 59.788 38.462 0.00 0.00 0.00 4.69
1794 1854 6.637657 ACAAAATTAACTACTACTCCCTCCG 58.362 40.000 0.00 0.00 0.00 4.63
1795 1855 7.551974 GGAACAAAATTAACTACTACTCCCTCC 59.448 40.741 0.00 0.00 0.00 4.30
1796 1856 8.319881 AGGAACAAAATTAACTACTACTCCCTC 58.680 37.037 0.00 0.00 0.00 4.30
1797 1857 8.215954 AGGAACAAAATTAACTACTACTCCCT 57.784 34.615 0.00 0.00 0.00 4.20
1798 1858 7.551974 GGAGGAACAAAATTAACTACTACTCCC 59.448 40.741 0.00 0.00 33.86 4.30
1799 1859 7.551974 GGGAGGAACAAAATTAACTACTACTCC 59.448 40.741 0.00 0.00 37.97 3.85
1800 1860 8.098912 TGGGAGGAACAAAATTAACTACTACTC 58.901 37.037 0.00 0.00 0.00 2.59
1801 1861 7.981142 TGGGAGGAACAAAATTAACTACTACT 58.019 34.615 0.00 0.00 0.00 2.57
1802 1862 8.509690 GTTGGGAGGAACAAAATTAACTACTAC 58.490 37.037 0.00 0.00 0.00 2.73
1803 1863 7.388500 CGTTGGGAGGAACAAAATTAACTACTA 59.612 37.037 0.00 0.00 0.00 1.82
1804 1864 6.206048 CGTTGGGAGGAACAAAATTAACTACT 59.794 38.462 0.00 0.00 0.00 2.57
2094 2154 5.106157 CCATTATTTGAACGAAAGGCAGAGT 60.106 40.000 0.00 0.00 0.00 3.24
2265 2325 5.862323 TCGAACAGCAACTAAGAGAACATAC 59.138 40.000 0.00 0.00 0.00 2.39
2458 2524 8.909671 CATAGTTTAAGCTGCTTCTTTTTCAAG 58.090 33.333 19.62 0.00 0.00 3.02
2486 2552 8.635765 AAGTAGGCAAAATGTGAAAGAATAGA 57.364 30.769 0.00 0.00 0.00 1.98
2561 2627 8.894768 ATACCTCTTGTTTCATCATTAGCTAC 57.105 34.615 0.00 0.00 0.00 3.58
2562 2628 8.928448 AGATACCTCTTGTTTCATCATTAGCTA 58.072 33.333 0.00 0.00 0.00 3.32
2563 2629 7.714377 CAGATACCTCTTGTTTCATCATTAGCT 59.286 37.037 0.00 0.00 0.00 3.32
2622 2689 4.667573 AGGTGTGTGATCTCTGTCTAAGA 58.332 43.478 0.00 0.00 0.00 2.10
2653 2720 4.160626 AGAAGGTGTCTAATTTCTCTCCCG 59.839 45.833 0.00 0.00 33.56 5.14
2682 2749 4.217118 AGCAAGCATTCTACTTTTCACCAG 59.783 41.667 0.00 0.00 0.00 4.00
2972 3051 8.795786 TTCAAAATTGATAGTTCTTTTGGTCG 57.204 30.769 0.00 0.00 38.50 4.79
3134 3213 7.611770 CAGTATTAGGTGCATACAGCCTATAA 58.388 38.462 1.18 0.00 45.66 0.98
3216 3295 6.618287 TTTCCAAATGCCTCTACATAATCG 57.382 37.500 0.00 0.00 0.00 3.34
3279 3358 3.126343 CAGCACGTGTTTATTTACCCCTC 59.874 47.826 18.38 0.00 0.00 4.30
3356 3436 4.406003 GGGTGAGCTCTTTCCAGTTATCTA 59.594 45.833 16.19 0.00 0.00 1.98
3377 3457 2.419667 CCTTTGCTTTGATGCTTTGGG 58.580 47.619 0.00 0.00 0.00 4.12
3387 3467 1.738830 CCGCATGCCCTTTGCTTTG 60.739 57.895 13.15 0.00 42.00 2.77
3450 3530 1.824852 GCAAATGAAGTTACCAGGGGG 59.175 52.381 0.00 0.00 41.29 5.40
3503 3583 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3504 3584 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3505 3585 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3506 3586 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3507 3587 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3508 3588 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3521 3601 9.354673 ACCATTTGAAATCTCTAGAAAGACAAA 57.645 29.630 0.00 4.41 0.00 2.83
3522 3602 8.924511 ACCATTTGAAATCTCTAGAAAGACAA 57.075 30.769 0.00 0.00 0.00 3.18
3523 3603 8.924511 AACCATTTGAAATCTCTAGAAAGACA 57.075 30.769 0.00 0.00 0.00 3.41
3525 3605 9.449719 GGTAACCATTTGAAATCTCTAGAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
3526 3606 9.231297 TGGTAACCATTTGAAATCTCTAGAAAG 57.769 33.333 0.00 0.00 0.00 2.62
3527 3607 9.010029 GTGGTAACCATTTGAAATCTCTAGAAA 57.990 33.333 0.00 0.00 35.28 2.52
3528 3608 8.160765 TGTGGTAACCATTTGAAATCTCTAGAA 58.839 33.333 0.00 0.00 35.28 2.10
3529 3609 7.685481 TGTGGTAACCATTTGAAATCTCTAGA 58.315 34.615 0.00 0.00 35.28 2.43
3530 3610 7.921786 TGTGGTAACCATTTGAAATCTCTAG 57.078 36.000 0.00 0.00 35.28 2.43
3531 3611 9.391006 GTATGTGGTAACCATTTGAAATCTCTA 57.609 33.333 0.00 0.00 35.28 2.43
3532 3612 7.065803 CGTATGTGGTAACCATTTGAAATCTCT 59.934 37.037 0.00 0.00 35.28 3.10
3533 3613 7.186804 CGTATGTGGTAACCATTTGAAATCTC 58.813 38.462 0.00 0.00 35.28 2.75
3534 3614 6.094881 CCGTATGTGGTAACCATTTGAAATCT 59.905 38.462 0.00 0.00 35.28 2.40
3535 3615 6.094325 TCCGTATGTGGTAACCATTTGAAATC 59.906 38.462 0.00 0.00 35.28 2.17
3536 3616 5.946972 TCCGTATGTGGTAACCATTTGAAAT 59.053 36.000 0.00 0.00 35.28 2.17
3537 3617 5.314529 TCCGTATGTGGTAACCATTTGAAA 58.685 37.500 0.00 0.00 35.28 2.69
3538 3618 4.907809 TCCGTATGTGGTAACCATTTGAA 58.092 39.130 0.00 0.00 35.28 2.69
3539 3619 4.554960 TCCGTATGTGGTAACCATTTGA 57.445 40.909 0.00 0.00 35.28 2.69
3540 3620 4.638421 ACATCCGTATGTGGTAACCATTTG 59.362 41.667 0.00 0.00 44.79 2.32
3541 3621 4.850680 ACATCCGTATGTGGTAACCATTT 58.149 39.130 0.00 0.00 44.79 2.32
3542 3622 4.497291 ACATCCGTATGTGGTAACCATT 57.503 40.909 0.00 0.00 44.79 3.16
3543 3623 5.818678 ATACATCCGTATGTGGTAACCAT 57.181 39.130 3.56 0.00 45.99 3.55
3544 3624 6.921486 ATATACATCCGTATGTGGTAACCA 57.079 37.500 3.56 0.00 45.99 3.67
3545 3625 8.186821 GTCTATATACATCCGTATGTGGTAACC 58.813 40.741 3.56 0.00 45.99 2.85
3546 3626 8.733458 TGTCTATATACATCCGTATGTGGTAAC 58.267 37.037 3.56 0.00 45.99 2.50
3547 3627 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
3549 3629 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3582 3662 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3583 3663 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3584 3664 4.870426 TCGGAGCAAAATGAGTGAATCTAC 59.130 41.667 0.00 0.00 0.00 2.59
3585 3665 5.084818 TCGGAGCAAAATGAGTGAATCTA 57.915 39.130 0.00 0.00 0.00 1.98
3586 3666 3.942829 TCGGAGCAAAATGAGTGAATCT 58.057 40.909 0.00 0.00 0.00 2.40
3587 3667 4.685169 TTCGGAGCAAAATGAGTGAATC 57.315 40.909 0.00 0.00 0.00 2.52
3588 3668 4.460382 ACATTCGGAGCAAAATGAGTGAAT 59.540 37.500 2.36 0.00 36.57 2.57
3589 3669 3.820467 ACATTCGGAGCAAAATGAGTGAA 59.180 39.130 2.36 0.00 36.57 3.18
3590 3670 3.411446 ACATTCGGAGCAAAATGAGTGA 58.589 40.909 2.36 0.00 36.57 3.41
3591 3671 3.837213 ACATTCGGAGCAAAATGAGTG 57.163 42.857 2.36 0.00 36.57 3.51
3592 3672 4.579869 ACTACATTCGGAGCAAAATGAGT 58.420 39.130 2.36 0.09 36.57 3.41
3593 3673 4.631377 TGACTACATTCGGAGCAAAATGAG 59.369 41.667 2.36 0.00 36.57 2.90
3594 3674 4.391830 GTGACTACATTCGGAGCAAAATGA 59.608 41.667 2.36 0.00 36.57 2.57
3595 3675 4.393062 AGTGACTACATTCGGAGCAAAATG 59.607 41.667 0.00 0.00 38.54 2.32
3596 3676 4.579869 AGTGACTACATTCGGAGCAAAAT 58.420 39.130 0.00 0.00 0.00 1.82
3597 3677 4.002906 AGTGACTACATTCGGAGCAAAA 57.997 40.909 0.00 0.00 0.00 2.44
3598 3678 3.678056 AGTGACTACATTCGGAGCAAA 57.322 42.857 0.00 0.00 0.00 3.68
3599 3679 3.244078 ACAAGTGACTACATTCGGAGCAA 60.244 43.478 0.00 0.00 0.00 3.91
3600 3680 2.299013 ACAAGTGACTACATTCGGAGCA 59.701 45.455 0.00 0.00 0.00 4.26
3601 3681 2.960819 ACAAGTGACTACATTCGGAGC 58.039 47.619 0.00 0.00 0.00 4.70
3602 3682 4.556233 TCAACAAGTGACTACATTCGGAG 58.444 43.478 0.00 0.00 0.00 4.63
3603 3683 4.594123 TCAACAAGTGACTACATTCGGA 57.406 40.909 0.00 0.00 0.00 4.55
3604 3684 5.440685 GTTTCAACAAGTGACTACATTCGG 58.559 41.667 0.00 0.00 35.39 4.30
3605 3685 5.236478 AGGTTTCAACAAGTGACTACATTCG 59.764 40.000 0.00 0.00 35.39 3.34
3606 3686 6.483640 AGAGGTTTCAACAAGTGACTACATTC 59.516 38.462 0.00 0.00 35.39 2.67
3607 3687 6.357367 AGAGGTTTCAACAAGTGACTACATT 58.643 36.000 0.00 0.00 35.39 2.71
3608 3688 5.930135 AGAGGTTTCAACAAGTGACTACAT 58.070 37.500 0.00 0.00 35.39 2.29
3609 3689 5.353394 AGAGGTTTCAACAAGTGACTACA 57.647 39.130 0.00 0.00 35.39 2.74
3610 3690 7.781548 TTTAGAGGTTTCAACAAGTGACTAC 57.218 36.000 0.00 0.00 35.39 2.73
3611 3691 8.795842 TTTTTAGAGGTTTCAACAAGTGACTA 57.204 30.769 0.00 0.00 35.39 2.59
3612 3692 7.610305 TCTTTTTAGAGGTTTCAACAAGTGACT 59.390 33.333 0.00 0.00 35.39 3.41
3613 3693 7.696872 GTCTTTTTAGAGGTTTCAACAAGTGAC 59.303 37.037 0.00 0.00 35.39 3.67
3614 3694 7.392113 TGTCTTTTTAGAGGTTTCAACAAGTGA 59.608 33.333 0.00 0.00 0.00 3.41
3615 3695 7.535139 TGTCTTTTTAGAGGTTTCAACAAGTG 58.465 34.615 0.00 0.00 0.00 3.16
3616 3696 7.696992 TGTCTTTTTAGAGGTTTCAACAAGT 57.303 32.000 0.00 0.00 0.00 3.16
3617 3697 8.980143 TTTGTCTTTTTAGAGGTTTCAACAAG 57.020 30.769 0.00 0.00 0.00 3.16
3632 3712 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3633 3713 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3634 3714 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3635 3715 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3636 3716 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3637 3717 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3638 3718 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3639 3719 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3640 3720 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3641 3721 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3642 3722 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3643 3723 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3644 3724 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3645 3725 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3646 3726 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3647 3727 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
3648 3728 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
3649 3729 5.075493 TCTATAATGTACTCCCTCCGTTCC 58.925 45.833 0.00 0.00 0.00 3.62
3650 3730 6.645790 TTCTATAATGTACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
3651 3731 7.427989 TTTTCTATAATGTACTCCCTCCGTT 57.572 36.000 0.00 0.00 0.00 4.44
3652 3732 7.270779 GTTTTTCTATAATGTACTCCCTCCGT 58.729 38.462 0.00 0.00 0.00 4.69
3653 3733 6.704937 GGTTTTTCTATAATGTACTCCCTCCG 59.295 42.308 0.00 0.00 0.00 4.63
3654 3734 7.498239 GTGGTTTTTCTATAATGTACTCCCTCC 59.502 40.741 0.00 0.00 0.00 4.30
3655 3735 8.265764 AGTGGTTTTTCTATAATGTACTCCCTC 58.734 37.037 0.00 0.00 0.00 4.30
3656 3736 8.047310 CAGTGGTTTTTCTATAATGTACTCCCT 58.953 37.037 0.00 0.00 0.00 4.20
3657 3737 7.282450 CCAGTGGTTTTTCTATAATGTACTCCC 59.718 40.741 0.00 0.00 0.00 4.30
3658 3738 8.044908 TCCAGTGGTTTTTCTATAATGTACTCC 58.955 37.037 9.54 0.00 0.00 3.85
3659 3739 9.444600 TTCCAGTGGTTTTTCTATAATGTACTC 57.555 33.333 9.54 0.00 0.00 2.59
3660 3740 9.975218 ATTCCAGTGGTTTTTCTATAATGTACT 57.025 29.630 9.54 0.00 0.00 2.73
3669 3749 8.581578 GGAAAATGTATTCCAGTGGTTTTTCTA 58.418 33.333 9.54 0.00 46.70 2.10
3715 3801 4.201960 CGAGCTCACTTCTCATGTTAGCTA 60.202 45.833 15.40 0.00 42.73 3.32
3789 3875 4.097892 ACACAAAAGGAGGACACAATGAAC 59.902 41.667 0.00 0.00 0.00 3.18
3791 3877 3.882888 GACACAAAAGGAGGACACAATGA 59.117 43.478 0.00 0.00 0.00 2.57
3794 3880 2.025793 TGGACACAAAAGGAGGACACAA 60.026 45.455 0.00 0.00 0.00 3.33
3806 3892 3.020984 GGGTTTCAGTTCTGGACACAAA 58.979 45.455 0.00 0.00 0.00 2.83
3808 3894 1.133915 GGGGTTTCAGTTCTGGACACA 60.134 52.381 10.01 0.00 0.00 3.72
3829 3915 5.537300 TCCTACATAAATCAGCTCTGGAC 57.463 43.478 0.00 0.00 0.00 4.02
3923 4088 9.840427 GTTAAACATAACACATTGCTACTTGAT 57.160 29.630 0.00 0.00 0.00 2.57
4024 4189 5.104776 TCAGTGATGATTGTAAGAAGGGGAG 60.105 44.000 0.00 0.00 0.00 4.30
4098 4265 9.817809 GTTTAGACAGGTCATCATAAGTTCATA 57.182 33.333 1.84 0.00 0.00 2.15
4099 4266 8.543774 AGTTTAGACAGGTCATCATAAGTTCAT 58.456 33.333 1.84 0.00 0.00 2.57
4100 4267 7.907389 AGTTTAGACAGGTCATCATAAGTTCA 58.093 34.615 1.84 0.00 0.00 3.18
4101 4268 8.779354 AAGTTTAGACAGGTCATCATAAGTTC 57.221 34.615 1.84 0.00 0.00 3.01
4293 4464 1.064463 ACGGTAAGAGTATCGACCCCA 60.064 52.381 0.00 0.00 41.32 4.96
4343 4517 7.012989 GGAAGTGGTCAGAACTAAGCTTAAAAA 59.987 37.037 7.74 0.00 0.00 1.94
4344 4518 6.485648 GGAAGTGGTCAGAACTAAGCTTAAAA 59.514 38.462 7.74 0.00 0.00 1.52
4345 4519 5.995897 GGAAGTGGTCAGAACTAAGCTTAAA 59.004 40.000 7.74 0.00 0.00 1.52
4346 4520 5.307196 AGGAAGTGGTCAGAACTAAGCTTAA 59.693 40.000 7.74 0.00 0.00 1.85
4347 4521 4.838986 AGGAAGTGGTCAGAACTAAGCTTA 59.161 41.667 5.94 5.94 0.00 3.09
4348 4522 3.648545 AGGAAGTGGTCAGAACTAAGCTT 59.351 43.478 3.48 3.48 0.00 3.74
4349 4523 3.243724 AGGAAGTGGTCAGAACTAAGCT 58.756 45.455 0.00 0.00 0.00 3.74
4350 4524 3.259625 AGAGGAAGTGGTCAGAACTAAGC 59.740 47.826 0.00 0.00 0.00 3.09
4351 4525 4.770010 AGAGAGGAAGTGGTCAGAACTAAG 59.230 45.833 0.00 0.00 0.00 2.18
4352 4526 4.524714 CAGAGAGGAAGTGGTCAGAACTAA 59.475 45.833 0.00 0.00 0.00 2.24
4353 4527 4.082845 CAGAGAGGAAGTGGTCAGAACTA 58.917 47.826 0.00 0.00 0.00 2.24
4354 4528 2.896685 CAGAGAGGAAGTGGTCAGAACT 59.103 50.000 0.00 0.00 0.00 3.01
4355 4529 2.630580 ACAGAGAGGAAGTGGTCAGAAC 59.369 50.000 0.00 0.00 0.00 3.01
4356 4530 2.964209 ACAGAGAGGAAGTGGTCAGAA 58.036 47.619 0.00 0.00 0.00 3.02
4357 4531 2.685106 ACAGAGAGGAAGTGGTCAGA 57.315 50.000 0.00 0.00 0.00 3.27
4358 4532 3.056465 GGTTACAGAGAGGAAGTGGTCAG 60.056 52.174 0.00 0.00 0.00 3.51
4359 4533 2.897969 GGTTACAGAGAGGAAGTGGTCA 59.102 50.000 0.00 0.00 0.00 4.02
4360 4534 3.056465 CAGGTTACAGAGAGGAAGTGGTC 60.056 52.174 0.00 0.00 0.00 4.02
4361 4535 2.900546 CAGGTTACAGAGAGGAAGTGGT 59.099 50.000 0.00 0.00 0.00 4.16
4362 4536 2.234908 CCAGGTTACAGAGAGGAAGTGG 59.765 54.545 0.00 0.00 0.00 4.00
4363 4537 3.165875 TCCAGGTTACAGAGAGGAAGTG 58.834 50.000 0.00 0.00 0.00 3.16
4364 4538 3.544698 TCCAGGTTACAGAGAGGAAGT 57.455 47.619 0.00 0.00 0.00 3.01
4365 4539 5.600484 ACATATCCAGGTTACAGAGAGGAAG 59.400 44.000 0.00 0.00 0.00 3.46
4366 4540 5.529289 ACATATCCAGGTTACAGAGAGGAA 58.471 41.667 0.00 0.00 0.00 3.36
4386 4561 1.671850 CGTACGCACCTGGAGAAACAT 60.672 52.381 0.52 0.00 0.00 2.71
4466 4643 2.366916 GGCTGTGATGTGATACTAGCCT 59.633 50.000 0.00 0.00 44.33 4.58
4563 4758 3.256960 GTGGAAGGACCCAGGCCA 61.257 66.667 5.01 0.00 36.78 5.36
4742 4937 6.204688 TGGTTCTAGTTTACAGCAGAAACATG 59.795 38.462 9.80 0.00 39.24 3.21
4787 4987 1.401539 GGAATCGCAAAACTGCTGACC 60.402 52.381 0.00 0.00 0.00 4.02
4876 5088 5.296151 ACGGTAGTAGTAGTAGTATGCCA 57.704 43.478 0.00 0.00 0.00 4.92
4885 5097 9.228949 CCAGAAATATCATACGGTAGTAGTAGT 57.771 37.037 0.00 0.00 36.12 2.73
4886 5098 9.228949 ACCAGAAATATCATACGGTAGTAGTAG 57.771 37.037 0.00 0.00 36.12 2.57
4899 5111 4.333649 CGCACAGTGAACCAGAAATATCAT 59.666 41.667 4.15 0.00 0.00 2.45
4900 5112 3.684305 CGCACAGTGAACCAGAAATATCA 59.316 43.478 4.15 0.00 0.00 2.15
4958 5170 4.767255 GGCAGCGTGACAGGGAGG 62.767 72.222 0.00 0.00 0.00 4.30
4959 5171 2.809861 AATGGCAGCGTGACAGGGAG 62.810 60.000 0.00 0.00 39.76 4.30
4960 5172 1.549243 TAATGGCAGCGTGACAGGGA 61.549 55.000 0.00 0.00 39.76 4.20
4961 5173 1.078497 TAATGGCAGCGTGACAGGG 60.078 57.895 0.00 0.00 39.76 4.45
5009 5228 0.179156 TCCGTTCCTATCGACAACGC 60.179 55.000 12.76 0.00 41.23 4.84
5024 5243 1.210478 CCAGGACCAATCTGATTCCGT 59.790 52.381 0.00 0.00 34.36 4.69
5101 5325 2.487934 GATGGATGGACAACTGATCGG 58.512 52.381 0.00 0.00 0.00 4.18
5146 5389 0.942962 GGTGCATCAGTAGCATGAGC 59.057 55.000 0.00 0.00 44.79 4.26
5164 5407 6.909357 GCAAGTAGTAGCGTATATAATACGGG 59.091 42.308 18.11 0.00 40.86 5.28
5183 5640 4.262617 AGTCTGTCGTCTATCAGCAAGTA 58.737 43.478 0.00 0.00 0.00 2.24
5184 5641 3.085533 AGTCTGTCGTCTATCAGCAAGT 58.914 45.455 0.00 0.00 0.00 3.16
5185 5642 3.690422 GAGTCTGTCGTCTATCAGCAAG 58.310 50.000 0.00 0.00 0.00 4.01
5186 5643 2.096013 CGAGTCTGTCGTCTATCAGCAA 59.904 50.000 0.00 0.00 44.20 3.91
5204 5662 1.645034 AGCATGTTGATCCGTTCGAG 58.355 50.000 0.00 0.00 0.00 4.04
5205 5663 1.999735 GAAGCATGTTGATCCGTTCGA 59.000 47.619 0.00 0.00 0.00 3.71
5346 5816 4.530857 GGGATGGGAGTCACGGCG 62.531 72.222 4.80 4.80 0.00 6.46
5347 5817 4.176752 GGGGATGGGAGTCACGGC 62.177 72.222 0.00 0.00 0.00 5.68
5348 5818 3.849951 CGGGGATGGGAGTCACGG 61.850 72.222 0.00 0.00 0.00 4.94
5349 5819 3.075005 ACGGGGATGGGAGTCACG 61.075 66.667 0.00 0.00 0.00 4.35
5350 5820 2.901042 GACGGGGATGGGAGTCAC 59.099 66.667 0.00 0.00 34.09 3.67
5351 5821 2.758327 CGACGGGGATGGGAGTCA 60.758 66.667 0.00 0.00 33.56 3.41
5352 5822 3.537874 CCGACGGGGATGGGAGTC 61.538 72.222 5.81 0.00 38.47 3.36
5381 5851 4.035102 GTGGACTGGGGGAGTGGC 62.035 72.222 0.00 0.00 33.83 5.01
5382 5852 3.706373 CGTGGACTGGGGGAGTGG 61.706 72.222 0.00 0.00 33.83 4.00
5383 5853 3.706373 CCGTGGACTGGGGGAGTG 61.706 72.222 0.00 0.00 33.83 3.51
5402 5872 3.211963 GATGGGATGGGTGCGTGC 61.212 66.667 0.00 0.00 0.00 5.34
5403 5873 2.516930 GGATGGGATGGGTGCGTG 60.517 66.667 0.00 0.00 0.00 5.34
5404 5874 3.809013 GGGATGGGATGGGTGCGT 61.809 66.667 0.00 0.00 0.00 5.24
5405 5875 4.586235 GGGGATGGGATGGGTGCG 62.586 72.222 0.00 0.00 0.00 5.34
5406 5876 3.105928 AGGGGATGGGATGGGTGC 61.106 66.667 0.00 0.00 0.00 5.01
5407 5877 2.464403 GGAGGGGATGGGATGGGTG 61.464 68.421 0.00 0.00 0.00 4.61
5408 5878 2.038330 GGAGGGGATGGGATGGGT 60.038 66.667 0.00 0.00 0.00 4.51
5409 5879 2.038438 TGGAGGGGATGGGATGGG 60.038 66.667 0.00 0.00 0.00 4.00
5410 5880 2.822637 CGTGGAGGGGATGGGATGG 61.823 68.421 0.00 0.00 0.00 3.51
5411 5881 1.762522 CTCGTGGAGGGGATGGGATG 61.763 65.000 0.00 0.00 0.00 3.51
5412 5882 1.460305 CTCGTGGAGGGGATGGGAT 60.460 63.158 0.00 0.00 0.00 3.85
5413 5883 2.041922 CTCGTGGAGGGGATGGGA 60.042 66.667 0.00 0.00 0.00 4.37
5414 5884 3.866582 GCTCGTGGAGGGGATGGG 61.867 72.222 0.00 0.00 0.00 4.00
5415 5885 2.196997 TTTGCTCGTGGAGGGGATGG 62.197 60.000 0.00 0.00 0.00 3.51
5416 5886 0.322456 TTTTGCTCGTGGAGGGGATG 60.322 55.000 0.00 0.00 0.00 3.51
5417 5887 0.322546 GTTTTGCTCGTGGAGGGGAT 60.323 55.000 0.00 0.00 0.00 3.85
5420 6182 2.325082 CGGTTTTGCTCGTGGAGGG 61.325 63.158 0.00 0.00 0.00 4.30
5466 6228 6.092533 TGAACCGACGGGAAAATAATTAGTTC 59.907 38.462 20.00 8.32 36.97 3.01
5611 6417 2.103042 GCATGGTGTCAGCGGACTC 61.103 63.158 17.94 13.92 44.61 3.36
5612 6418 2.046892 GCATGGTGTCAGCGGACT 60.047 61.111 17.94 0.00 44.61 3.85
5613 6419 3.127533 GGCATGGTGTCAGCGGAC 61.128 66.667 10.32 10.32 44.57 4.79
5614 6420 4.758251 CGGCATGGTGTCAGCGGA 62.758 66.667 0.00 0.00 0.00 5.54
5616 6422 4.758251 TCCGGCATGGTGTCAGCG 62.758 66.667 0.00 0.00 39.52 5.18
5617 6423 3.127533 GTCCGGCATGGTGTCAGC 61.128 66.667 0.00 0.00 39.52 4.26
5618 6424 1.300971 CTTGTCCGGCATGGTGTCAG 61.301 60.000 0.00 0.00 39.52 3.51
5619 6425 1.302431 CTTGTCCGGCATGGTGTCA 60.302 57.895 0.00 0.00 39.52 3.58
5620 6426 2.040544 CCTTGTCCGGCATGGTGTC 61.041 63.158 17.26 0.00 37.56 3.67
5621 6427 2.034066 CCTTGTCCGGCATGGTGT 59.966 61.111 17.26 0.00 37.56 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.