Multiple sequence alignment - TraesCS5A01G285200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G285200 chr5A 100.000 2177 0 0 1 2177 493200480 493202656 0.000000e+00 4021
1 TraesCS5A01G285200 chr5A 87.512 1033 87 23 685 1689 676354120 676355138 0.000000e+00 1155
2 TraesCS5A01G285200 chr5A 95.481 686 30 1 2 687 676351988 676352672 0.000000e+00 1094
3 TraesCS5A01G285200 chr3A 92.991 1013 57 5 685 1685 561400287 561401297 0.000000e+00 1465
4 TraesCS5A01G285200 chr3A 90.852 317 18 3 1379 1685 561393924 561394239 4.320000e-112 414
5 TraesCS5A01G285200 chr2D 88.533 1029 82 19 685 1685 518250447 518251467 0.000000e+00 1214
6 TraesCS5A01G285200 chr2D 95.481 686 29 2 2 687 518214480 518215163 0.000000e+00 1094
7 TraesCS5A01G285200 chr2D 95.975 472 19 0 1706 2177 142799335 142798864 0.000000e+00 767
8 TraesCS5A01G285200 chr2D 93.737 495 28 3 1685 2177 78790416 78789923 0.000000e+00 739
9 TraesCS5A01G285200 chr2D 93.915 493 25 1 1685 2177 126932470 126932957 0.000000e+00 739
10 TraesCS5A01G285200 chr6B 87.476 1022 101 21 685 1690 671129496 671130506 0.000000e+00 1153
11 TraesCS5A01G285200 chr6B 94.752 686 35 1 2 687 118024473 118025157 0.000000e+00 1066
12 TraesCS5A01G285200 chr6B 96.727 611 19 1 82 692 671128176 671128785 0.000000e+00 1016
13 TraesCS5A01G285200 chr6B 96.700 606 18 2 82 687 708219772 708220375 0.000000e+00 1007
14 TraesCS5A01G285200 chr6B 91.772 632 47 3 685 1315 708221279 708221906 0.000000e+00 874
15 TraesCS5A01G285200 chr6B 91.496 635 49 5 685 1318 118026600 118027230 0.000000e+00 869
16 TraesCS5A01G285200 chr6B 85.088 456 44 15 1233 1684 118027179 118027614 5.510000e-121 444
17 TraesCS5A01G285200 chr3B 95.627 686 29 1 2 687 283637612 283638296 0.000000e+00 1099
18 TraesCS5A01G285200 chr3B 92.247 632 45 4 685 1315 283639198 283639826 0.000000e+00 893
19 TraesCS5A01G285200 chr3B 88.444 450 42 9 1239 1684 283639784 283640227 3.180000e-148 534
20 TraesCS5A01G285200 chr7A 97.209 609 16 1 82 690 674511346 674510739 0.000000e+00 1029
21 TraesCS5A01G285200 chr7A 88.391 379 38 5 1307 1685 123048478 123048106 3.300000e-123 451
22 TraesCS5A01G285200 chrUn 97.030 606 16 2 82 687 50576225 50576828 0.000000e+00 1018
23 TraesCS5A01G285200 chrUn 90.979 521 34 3 1178 1685 50976407 50975887 0.000000e+00 689
24 TraesCS5A01G285200 chrUn 90.979 521 34 3 1178 1685 466483063 466482543 0.000000e+00 689
25 TraesCS5A01G285200 chr1B 96.393 610 19 3 82 690 638557445 638556838 0.000000e+00 1002
26 TraesCS5A01G285200 chr7D 94.505 637 30 4 685 1318 58621135 58621769 0.000000e+00 977
27 TraesCS5A01G285200 chr7D 90.938 629 50 4 692 1318 118902790 118902167 0.000000e+00 839
28 TraesCS5A01G285200 chr7D 91.026 390 21 3 1308 1684 58621792 58622180 4.140000e-142 514
29 TraesCS5A01G285200 chr7D 87.798 377 38 7 1307 1681 118902144 118901774 3.320000e-118 435
30 TraesCS5A01G285200 chr7D 92.000 125 10 0 1 125 58509238 58509362 2.220000e-40 176
31 TraesCS5A01G285200 chr5B 92.126 635 46 2 685 1318 382535752 382536383 0.000000e+00 893
32 TraesCS5A01G285200 chr4A 91.930 632 47 2 685 1315 690357218 690357846 0.000000e+00 881
33 TraesCS5A01G285200 chr1D 94.705 491 24 2 1685 2173 378147028 378147518 0.000000e+00 761
34 TraesCS5A01G285200 chr6D 94.141 495 27 2 1685 2177 216754590 216754096 0.000000e+00 752
35 TraesCS5A01G285200 chr6D 93.712 493 31 0 1685 2177 450757959 450758451 0.000000e+00 739
36 TraesCS5A01G285200 chr4D 93.927 494 29 1 1685 2177 346543376 346543869 0.000000e+00 745
37 TraesCS5A01G285200 chr4D 93.915 493 27 3 1686 2177 100115944 100115454 0.000000e+00 741
38 TraesCS5A01G285200 chr5D 93.725 494 30 1 1685 2177 351561934 351562427 0.000000e+00 739


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G285200 chr5A 493200480 493202656 2176 False 4021.0 4021 100.000000 1 2177 1 chr5A.!!$F1 2176
1 TraesCS5A01G285200 chr5A 676351988 676355138 3150 False 1124.5 1155 91.496500 2 1689 2 chr5A.!!$F2 1687
2 TraesCS5A01G285200 chr3A 561400287 561401297 1010 False 1465.0 1465 92.991000 685 1685 1 chr3A.!!$F2 1000
3 TraesCS5A01G285200 chr2D 518250447 518251467 1020 False 1214.0 1214 88.533000 685 1685 1 chr2D.!!$F3 1000
4 TraesCS5A01G285200 chr2D 518214480 518215163 683 False 1094.0 1094 95.481000 2 687 1 chr2D.!!$F2 685
5 TraesCS5A01G285200 chr6B 671128176 671130506 2330 False 1084.5 1153 92.101500 82 1690 2 chr6B.!!$F2 1608
6 TraesCS5A01G285200 chr6B 708219772 708221906 2134 False 940.5 1007 94.236000 82 1315 2 chr6B.!!$F3 1233
7 TraesCS5A01G285200 chr6B 118024473 118027614 3141 False 793.0 1066 90.445333 2 1684 3 chr6B.!!$F1 1682
8 TraesCS5A01G285200 chr3B 283637612 283640227 2615 False 842.0 1099 92.106000 2 1684 3 chr3B.!!$F1 1682
9 TraesCS5A01G285200 chr7A 674510739 674511346 607 True 1029.0 1029 97.209000 82 690 1 chr7A.!!$R2 608
10 TraesCS5A01G285200 chrUn 50576225 50576828 603 False 1018.0 1018 97.030000 82 687 1 chrUn.!!$F1 605
11 TraesCS5A01G285200 chrUn 50975887 50976407 520 True 689.0 689 90.979000 1178 1685 1 chrUn.!!$R1 507
12 TraesCS5A01G285200 chrUn 466482543 466483063 520 True 689.0 689 90.979000 1178 1685 1 chrUn.!!$R2 507
13 TraesCS5A01G285200 chr1B 638556838 638557445 607 True 1002.0 1002 96.393000 82 690 1 chr1B.!!$R1 608
14 TraesCS5A01G285200 chr7D 58621135 58622180 1045 False 745.5 977 92.765500 685 1684 2 chr7D.!!$F2 999
15 TraesCS5A01G285200 chr7D 118901774 118902790 1016 True 637.0 839 89.368000 692 1681 2 chr7D.!!$R1 989
16 TraesCS5A01G285200 chr5B 382535752 382536383 631 False 893.0 893 92.126000 685 1318 1 chr5B.!!$F1 633
17 TraesCS5A01G285200 chr4A 690357218 690357846 628 False 881.0 881 91.930000 685 1315 1 chr4A.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 2199 0.028242 TTGCGTGTTTTGTGTAGGCG 59.972 50.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 3380 0.106708 TTATCATGTCGGGCTGCTCC 59.893 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.873719 TTTGGTGGTGTCAAGGTATATTATG 57.126 36.000 0.00 0.00 0.00 1.90
37 38 8.418662 GTGGTGTCAAGGTATATTATGTACTCA 58.581 37.037 0.00 0.00 0.00 3.41
61 62 8.935844 TCATACTTCATGTTTGTACTGTGATTC 58.064 33.333 0.00 0.00 35.96 2.52
62 63 6.560253 ACTTCATGTTTGTACTGTGATTCC 57.440 37.500 0.00 0.00 0.00 3.01
583 584 6.326375 CAGCGTTCTTTAGAGACTATCAGTT 58.674 40.000 0.00 0.00 0.00 3.16
687 688 4.503910 CCGATGATTACAAGTGGAAGTGA 58.496 43.478 0.00 0.00 0.00 3.41
738 2199 0.028242 TTGCGTGTTTTGTGTAGGCG 59.972 50.000 0.00 0.00 0.00 5.52
777 2238 4.740934 GCCTATAGGAACAAGGTAGTGCTG 60.741 50.000 23.61 0.00 37.39 4.41
841 2302 0.892755 CGGTGTAGGTGCTAGGACAA 59.107 55.000 16.81 0.42 0.00 3.18
871 2332 3.950397 TGTGTTCAAGAACCACAAGACT 58.050 40.909 10.19 0.00 40.46 3.24
893 2354 3.118261 TCACCTGTTGTTGAAGAAGCTCT 60.118 43.478 0.00 0.00 0.00 4.09
922 2383 0.749818 TCAAAAGAGGCAACGCACCA 60.750 50.000 0.00 0.00 46.39 4.17
949 2410 2.812591 GCTATCTTGTGCATGATGGGAG 59.187 50.000 0.00 2.82 0.00 4.30
987 2448 3.466836 TGATGACGCTTTGAAGACAACT 58.533 40.909 0.00 0.00 35.63 3.16
1296 2758 4.324669 CACTTGTGCTATGTGTAAGAGACG 59.675 45.833 0.00 0.00 31.66 4.18
1487 3022 9.562408 TGTACAGAAGTTTATATTGTCCAAACA 57.438 29.630 0.00 0.00 35.17 2.83
1524 3059 4.682563 TCCCATGGTTTGTACATCCAAAT 58.317 39.130 19.42 6.26 36.75 2.32
1665 3200 7.592164 GTCCAATTCAATTCCAAGCAATTTTTG 59.408 33.333 0.00 0.00 0.00 2.44
1692 3227 3.184736 AAACACAGCGTTTGGGTCT 57.815 47.368 0.00 0.00 44.58 3.85
1693 3228 0.738389 AAACACAGCGTTTGGGTCTG 59.262 50.000 0.00 0.00 44.58 3.51
1694 3229 0.393808 AACACAGCGTTTGGGTCTGT 60.394 50.000 0.00 0.00 44.58 3.41
1695 3230 0.466543 ACACAGCGTTTGGGTCTGTA 59.533 50.000 0.00 0.00 40.09 2.74
1696 3231 1.148310 CACAGCGTTTGGGTCTGTAG 58.852 55.000 0.00 0.00 38.85 2.74
1697 3232 0.034896 ACAGCGTTTGGGTCTGTAGG 59.965 55.000 0.00 0.00 39.08 3.18
1698 3233 0.034896 CAGCGTTTGGGTCTGTAGGT 59.965 55.000 0.00 0.00 0.00 3.08
1699 3234 0.034896 AGCGTTTGGGTCTGTAGGTG 59.965 55.000 0.00 0.00 0.00 4.00
1700 3235 0.250166 GCGTTTGGGTCTGTAGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
1701 3236 1.812708 GCGTTTGGGTCTGTAGGTGTT 60.813 52.381 0.00 0.00 0.00 3.32
1702 3237 2.567985 CGTTTGGGTCTGTAGGTGTTT 58.432 47.619 0.00 0.00 0.00 2.83
1703 3238 2.289547 CGTTTGGGTCTGTAGGTGTTTG 59.710 50.000 0.00 0.00 0.00 2.93
1704 3239 1.975660 TTGGGTCTGTAGGTGTTTGC 58.024 50.000 0.00 0.00 0.00 3.68
1705 3240 0.250124 TGGGTCTGTAGGTGTTTGCG 60.250 55.000 0.00 0.00 0.00 4.85
1706 3241 0.250166 GGGTCTGTAGGTGTTTGCGT 60.250 55.000 0.00 0.00 0.00 5.24
1707 3242 1.589803 GGTCTGTAGGTGTTTGCGTT 58.410 50.000 0.00 0.00 0.00 4.84
1708 3243 1.944709 GGTCTGTAGGTGTTTGCGTTT 59.055 47.619 0.00 0.00 0.00 3.60
1709 3244 2.286772 GGTCTGTAGGTGTTTGCGTTTG 60.287 50.000 0.00 0.00 0.00 2.93
1710 3245 1.944024 TCTGTAGGTGTTTGCGTTTGG 59.056 47.619 0.00 0.00 0.00 3.28
1711 3246 1.001815 CTGTAGGTGTTTGCGTTTGGG 60.002 52.381 0.00 0.00 0.00 4.12
1712 3247 1.026584 GTAGGTGTTTGCGTTTGGGT 58.973 50.000 0.00 0.00 0.00 4.51
1713 3248 1.406180 GTAGGTGTTTGCGTTTGGGTT 59.594 47.619 0.00 0.00 0.00 4.11
1714 3249 0.899019 AGGTGTTTGCGTTTGGGTTT 59.101 45.000 0.00 0.00 0.00 3.27
1715 3250 1.276705 AGGTGTTTGCGTTTGGGTTTT 59.723 42.857 0.00 0.00 0.00 2.43
1716 3251 1.395262 GGTGTTTGCGTTTGGGTTTTG 59.605 47.619 0.00 0.00 0.00 2.44
1717 3252 1.395262 GTGTTTGCGTTTGGGTTTTGG 59.605 47.619 0.00 0.00 0.00 3.28
1718 3253 1.002087 TGTTTGCGTTTGGGTTTTGGT 59.998 42.857 0.00 0.00 0.00 3.67
1719 3254 2.077627 GTTTGCGTTTGGGTTTTGGTT 58.922 42.857 0.00 0.00 0.00 3.67
1720 3255 2.474410 TTGCGTTTGGGTTTTGGTTT 57.526 40.000 0.00 0.00 0.00 3.27
1721 3256 2.474410 TGCGTTTGGGTTTTGGTTTT 57.526 40.000 0.00 0.00 0.00 2.43
1722 3257 2.347731 TGCGTTTGGGTTTTGGTTTTC 58.652 42.857 0.00 0.00 0.00 2.29
1723 3258 1.666700 GCGTTTGGGTTTTGGTTTTCC 59.333 47.619 0.00 0.00 41.14 3.13
1724 3259 2.678479 GCGTTTGGGTTTTGGTTTTCCT 60.678 45.455 0.00 0.00 41.38 3.36
1725 3260 3.191669 CGTTTGGGTTTTGGTTTTCCTC 58.808 45.455 0.00 0.00 41.38 3.71
1726 3261 3.368531 CGTTTGGGTTTTGGTTTTCCTCA 60.369 43.478 0.00 0.00 41.38 3.86
1727 3262 3.897141 TTGGGTTTTGGTTTTCCTCAC 57.103 42.857 0.00 0.00 41.38 3.51
1728 3263 3.108847 TGGGTTTTGGTTTTCCTCACT 57.891 42.857 0.00 0.00 41.38 3.41
1729 3264 3.445987 TGGGTTTTGGTTTTCCTCACTT 58.554 40.909 0.00 0.00 41.38 3.16
1730 3265 3.196685 TGGGTTTTGGTTTTCCTCACTTG 59.803 43.478 0.00 0.00 41.38 3.16
1731 3266 3.449377 GGGTTTTGGTTTTCCTCACTTGA 59.551 43.478 0.00 0.00 41.38 3.02
1732 3267 4.100963 GGGTTTTGGTTTTCCTCACTTGAT 59.899 41.667 0.00 0.00 41.38 2.57
1733 3268 5.049828 GGTTTTGGTTTTCCTCACTTGATG 58.950 41.667 0.00 0.00 41.38 3.07
1734 3269 5.163457 GGTTTTGGTTTTCCTCACTTGATGA 60.163 40.000 0.00 0.00 41.38 2.92
1735 3270 6.462909 GGTTTTGGTTTTCCTCACTTGATGAT 60.463 38.462 0.00 0.00 41.38 2.45
1736 3271 6.729690 TTTGGTTTTCCTCACTTGATGATT 57.270 33.333 0.00 0.00 41.38 2.57
1737 3272 6.729690 TTGGTTTTCCTCACTTGATGATTT 57.270 33.333 0.00 0.00 41.38 2.17
1738 3273 6.729690 TGGTTTTCCTCACTTGATGATTTT 57.270 33.333 0.00 0.00 41.38 1.82
1739 3274 7.123355 TGGTTTTCCTCACTTGATGATTTTT 57.877 32.000 0.00 0.00 41.38 1.94
1740 3275 6.985645 TGGTTTTCCTCACTTGATGATTTTTG 59.014 34.615 0.00 0.00 41.38 2.44
1741 3276 7.147759 TGGTTTTCCTCACTTGATGATTTTTGA 60.148 33.333 0.00 0.00 41.38 2.69
1742 3277 7.874528 GGTTTTCCTCACTTGATGATTTTTGAT 59.125 33.333 0.00 0.00 36.48 2.57
1743 3278 8.919661 GTTTTCCTCACTTGATGATTTTTGATC 58.080 33.333 0.00 0.00 36.48 2.92
1744 3279 7.764141 TTCCTCACTTGATGATTTTTGATCA 57.236 32.000 0.00 0.00 36.48 2.92
1745 3280 7.764141 TCCTCACTTGATGATTTTTGATCAA 57.236 32.000 3.38 3.38 36.48 2.57
1746 3281 8.180706 TCCTCACTTGATGATTTTTGATCAAA 57.819 30.769 16.91 16.91 37.96 2.69
1747 3282 8.301720 TCCTCACTTGATGATTTTTGATCAAAG 58.698 33.333 19.64 8.45 37.96 2.77
1748 3283 8.086522 CCTCACTTGATGATTTTTGATCAAAGT 58.913 33.333 19.64 13.24 37.96 2.66
1749 3284 9.125906 CTCACTTGATGATTTTTGATCAAAGTC 57.874 33.333 19.64 20.05 37.96 3.01
1750 3285 8.084073 TCACTTGATGATTTTTGATCAAAGTCC 58.916 33.333 19.64 13.03 37.96 3.85
1751 3286 8.086522 CACTTGATGATTTTTGATCAAAGTCCT 58.913 33.333 19.64 14.50 37.96 3.85
1752 3287 8.302438 ACTTGATGATTTTTGATCAAAGTCCTC 58.698 33.333 19.64 20.51 37.96 3.71
1753 3288 6.845302 TGATGATTTTTGATCAAAGTCCTCG 58.155 36.000 19.64 0.00 32.01 4.63
1754 3289 5.627499 TGATTTTTGATCAAAGTCCTCGG 57.373 39.130 19.64 0.00 31.50 4.63
1755 3290 5.312895 TGATTTTTGATCAAAGTCCTCGGA 58.687 37.500 19.64 1.14 31.50 4.55
1756 3291 5.412594 TGATTTTTGATCAAAGTCCTCGGAG 59.587 40.000 19.64 0.00 31.50 4.63
1757 3292 3.334583 TTTGATCAAAGTCCTCGGAGG 57.665 47.619 18.25 18.25 36.46 4.30
1758 3293 2.231716 TGATCAAAGTCCTCGGAGGA 57.768 50.000 22.70 22.70 43.43 3.71
1765 3300 4.627394 TCCTCGGAGGATGGGATG 57.373 61.111 22.70 0.00 40.06 3.51
1766 3301 1.838846 TCCTCGGAGGATGGGATGC 60.839 63.158 22.70 0.00 40.06 3.91
1767 3302 1.840650 CCTCGGAGGATGGGATGCT 60.841 63.158 19.57 0.00 37.67 3.79
1768 3303 1.670590 CTCGGAGGATGGGATGCTC 59.329 63.158 0.00 0.00 45.77 4.26
1769 3304 0.831288 CTCGGAGGATGGGATGCTCT 60.831 60.000 5.25 0.00 45.78 4.09
1770 3305 0.829602 TCGGAGGATGGGATGCTCTC 60.830 60.000 5.25 0.00 45.78 3.20
1771 3306 1.117749 CGGAGGATGGGATGCTCTCA 61.118 60.000 5.25 0.00 45.78 3.27
1772 3307 1.135094 GGAGGATGGGATGCTCTCAA 58.865 55.000 5.25 0.00 45.78 3.02
1773 3308 1.492176 GGAGGATGGGATGCTCTCAAA 59.508 52.381 5.25 0.00 45.78 2.69
1774 3309 2.107901 GGAGGATGGGATGCTCTCAAAT 59.892 50.000 5.25 0.00 45.78 2.32
1775 3310 3.147629 GAGGATGGGATGCTCTCAAATG 58.852 50.000 0.00 0.00 43.50 2.32
1776 3311 2.781757 AGGATGGGATGCTCTCAAATGA 59.218 45.455 0.00 0.00 26.19 2.57
1777 3312 2.883386 GGATGGGATGCTCTCAAATGAC 59.117 50.000 0.00 0.00 26.19 3.06
1778 3313 3.548770 GATGGGATGCTCTCAAATGACA 58.451 45.455 0.00 0.00 26.19 3.58
1779 3314 3.438216 TGGGATGCTCTCAAATGACAA 57.562 42.857 0.00 0.00 0.00 3.18
1780 3315 3.349927 TGGGATGCTCTCAAATGACAAG 58.650 45.455 0.00 0.00 0.00 3.16
1781 3316 3.245016 TGGGATGCTCTCAAATGACAAGT 60.245 43.478 0.00 0.00 0.00 3.16
1782 3317 3.128242 GGGATGCTCTCAAATGACAAGTG 59.872 47.826 0.00 0.00 0.00 3.16
1783 3318 3.755378 GGATGCTCTCAAATGACAAGTGT 59.245 43.478 0.00 0.00 0.00 3.55
1784 3319 4.142730 GGATGCTCTCAAATGACAAGTGTC 60.143 45.833 4.43 4.43 44.97 3.67
1796 3331 3.053455 GACAAGTGTCAGTTTCTCTCGG 58.947 50.000 6.57 0.00 44.18 4.63
1797 3332 2.693591 ACAAGTGTCAGTTTCTCTCGGA 59.306 45.455 0.00 0.00 0.00 4.55
1798 3333 3.243569 ACAAGTGTCAGTTTCTCTCGGAG 60.244 47.826 0.00 0.00 0.00 4.63
1799 3334 1.271102 AGTGTCAGTTTCTCTCGGAGC 59.729 52.381 0.00 0.00 0.00 4.70
1800 3335 1.000163 GTGTCAGTTTCTCTCGGAGCA 60.000 52.381 0.00 0.00 0.00 4.26
1801 3336 1.270826 TGTCAGTTTCTCTCGGAGCAG 59.729 52.381 0.00 0.00 0.00 4.24
1802 3337 0.244994 TCAGTTTCTCTCGGAGCAGC 59.755 55.000 0.00 0.00 0.00 5.25
1803 3338 0.739112 CAGTTTCTCTCGGAGCAGCC 60.739 60.000 0.00 0.00 0.00 4.85
1804 3339 1.188219 AGTTTCTCTCGGAGCAGCCA 61.188 55.000 0.00 0.00 35.94 4.75
1805 3340 0.320771 GTTTCTCTCGGAGCAGCCAA 60.321 55.000 0.00 0.00 35.94 4.52
1806 3341 0.320771 TTTCTCTCGGAGCAGCCAAC 60.321 55.000 0.00 0.00 35.94 3.77
1807 3342 2.125350 CTCTCGGAGCAGCCAACC 60.125 66.667 0.00 0.00 35.94 3.77
1808 3343 2.922503 TCTCGGAGCAGCCAACCA 60.923 61.111 0.00 0.00 35.94 3.67
1809 3344 2.435586 CTCGGAGCAGCCAACCAG 60.436 66.667 0.00 0.00 35.94 4.00
1810 3345 4.704833 TCGGAGCAGCCAACCAGC 62.705 66.667 0.00 0.00 35.94 4.85
1811 3346 4.711949 CGGAGCAGCCAACCAGCT 62.712 66.667 0.00 0.00 46.45 4.24
1812 3347 2.671070 GGAGCAGCCAACCAGCTA 59.329 61.111 0.00 0.00 42.61 3.32
1813 3348 1.451028 GGAGCAGCCAACCAGCTAG 60.451 63.158 0.00 0.00 42.61 3.42
1814 3349 1.298014 GAGCAGCCAACCAGCTAGT 59.702 57.895 0.00 0.00 42.61 2.57
1815 3350 1.002868 AGCAGCCAACCAGCTAGTG 60.003 57.895 0.00 0.00 42.61 2.74
1816 3351 1.003355 GCAGCCAACCAGCTAGTGA 60.003 57.895 0.00 0.00 42.61 3.41
1817 3352 0.393537 GCAGCCAACCAGCTAGTGAT 60.394 55.000 0.00 0.00 42.61 3.06
1818 3353 1.952367 GCAGCCAACCAGCTAGTGATT 60.952 52.381 0.00 0.00 42.61 2.57
1819 3354 1.741706 CAGCCAACCAGCTAGTGATTG 59.258 52.381 0.00 0.00 42.61 2.67
1820 3355 1.352352 AGCCAACCAGCTAGTGATTGT 59.648 47.619 0.00 0.00 42.70 2.71
1821 3356 2.571653 AGCCAACCAGCTAGTGATTGTA 59.428 45.455 0.00 0.00 42.70 2.41
1822 3357 2.939103 GCCAACCAGCTAGTGATTGTAG 59.061 50.000 0.00 0.00 0.00 2.74
1823 3358 3.535561 CCAACCAGCTAGTGATTGTAGG 58.464 50.000 0.00 0.00 0.00 3.18
1824 3359 3.535561 CAACCAGCTAGTGATTGTAGGG 58.464 50.000 0.00 0.00 0.00 3.53
1825 3360 2.119495 ACCAGCTAGTGATTGTAGGGG 58.881 52.381 0.00 0.00 0.00 4.79
1826 3361 1.417890 CCAGCTAGTGATTGTAGGGGG 59.582 57.143 0.00 0.00 0.00 5.40
1827 3362 1.132500 AGCTAGTGATTGTAGGGGGC 58.868 55.000 0.00 0.00 0.00 5.80
1828 3363 0.249911 GCTAGTGATTGTAGGGGGCG 60.250 60.000 0.00 0.00 0.00 6.13
1829 3364 0.393077 CTAGTGATTGTAGGGGGCGG 59.607 60.000 0.00 0.00 0.00 6.13
1830 3365 1.692173 TAGTGATTGTAGGGGGCGGC 61.692 60.000 0.00 0.00 0.00 6.53
1831 3366 2.690881 TGATTGTAGGGGGCGGCT 60.691 61.111 9.56 0.00 0.00 5.52
1832 3367 1.383386 TGATTGTAGGGGGCGGCTA 60.383 57.895 9.56 0.00 0.00 3.93
1833 3368 0.766674 TGATTGTAGGGGGCGGCTAT 60.767 55.000 9.56 0.00 0.00 2.97
1834 3369 0.400594 GATTGTAGGGGGCGGCTATT 59.599 55.000 9.56 0.00 0.00 1.73
1835 3370 0.850784 ATTGTAGGGGGCGGCTATTT 59.149 50.000 9.56 0.00 0.00 1.40
1836 3371 1.509373 TTGTAGGGGGCGGCTATTTA 58.491 50.000 9.56 0.00 0.00 1.40
1837 3372 1.737199 TGTAGGGGGCGGCTATTTAT 58.263 50.000 9.56 0.00 0.00 1.40
1838 3373 2.905246 TGTAGGGGGCGGCTATTTATA 58.095 47.619 9.56 0.00 0.00 0.98
1839 3374 2.835764 TGTAGGGGGCGGCTATTTATAG 59.164 50.000 9.56 0.00 0.00 1.31
1852 3387 3.990959 ATTTATAGCCTAGGGAGCAGC 57.009 47.619 11.72 0.00 0.00 5.25
1853 3388 1.645710 TTATAGCCTAGGGAGCAGCC 58.354 55.000 11.72 0.00 0.00 4.85
1862 3397 2.507944 GGAGCAGCCCGACATGAT 59.492 61.111 0.00 0.00 0.00 2.45
1863 3398 1.748403 GGAGCAGCCCGACATGATA 59.252 57.895 0.00 0.00 0.00 2.15
1864 3399 0.106708 GGAGCAGCCCGACATGATAA 59.893 55.000 0.00 0.00 0.00 1.75
1865 3400 1.506493 GAGCAGCCCGACATGATAAG 58.494 55.000 0.00 0.00 0.00 1.73
1866 3401 1.069204 GAGCAGCCCGACATGATAAGA 59.931 52.381 0.00 0.00 0.00 2.10
1867 3402 1.202580 AGCAGCCCGACATGATAAGAC 60.203 52.381 0.00 0.00 0.00 3.01
1868 3403 1.473257 GCAGCCCGACATGATAAGACA 60.473 52.381 0.00 0.00 0.00 3.41
1869 3404 2.808202 GCAGCCCGACATGATAAGACAT 60.808 50.000 0.00 0.00 0.00 3.06
1870 3405 3.554960 GCAGCCCGACATGATAAGACATA 60.555 47.826 0.00 0.00 0.00 2.29
1871 3406 4.631131 CAGCCCGACATGATAAGACATAA 58.369 43.478 0.00 0.00 0.00 1.90
1872 3407 5.056480 CAGCCCGACATGATAAGACATAAA 58.944 41.667 0.00 0.00 0.00 1.40
1873 3408 5.702670 CAGCCCGACATGATAAGACATAAAT 59.297 40.000 0.00 0.00 0.00 1.40
1874 3409 5.702670 AGCCCGACATGATAAGACATAAATG 59.297 40.000 0.00 0.00 0.00 2.32
1875 3410 5.617751 GCCCGACATGATAAGACATAAATGC 60.618 44.000 0.00 0.00 0.00 3.56
1876 3411 5.106555 CCCGACATGATAAGACATAAATGCC 60.107 44.000 0.00 0.00 0.00 4.40
1877 3412 5.106555 CCGACATGATAAGACATAAATGCCC 60.107 44.000 0.00 0.00 0.00 5.36
1878 3413 5.702670 CGACATGATAAGACATAAATGCCCT 59.297 40.000 0.00 0.00 0.00 5.19
1879 3414 6.205464 CGACATGATAAGACATAAATGCCCTT 59.795 38.462 0.00 0.00 0.00 3.95
1880 3415 7.255242 CGACATGATAAGACATAAATGCCCTTT 60.255 37.037 0.00 0.00 0.00 3.11
1881 3416 8.995027 ACATGATAAGACATAAATGCCCTTTA 57.005 30.769 0.00 0.00 33.92 1.85
1882 3417 9.420118 ACATGATAAGACATAAATGCCCTTTAA 57.580 29.630 0.00 0.00 33.15 1.52
1885 3420 9.639563 TGATAAGACATAAATGCCCTTTAATGA 57.360 29.630 4.29 0.00 33.15 2.57
1890 3425 9.812347 AGACATAAATGCCCTTTAATGATATGA 57.188 29.630 0.00 0.00 33.15 2.15
1891 3426 9.846248 GACATAAATGCCCTTTAATGATATGAC 57.154 33.333 0.00 0.00 33.15 3.06
1892 3427 8.806146 ACATAAATGCCCTTTAATGATATGACC 58.194 33.333 0.00 0.00 33.15 4.02
1893 3428 5.964958 AATGCCCTTTAATGATATGACCG 57.035 39.130 0.00 0.00 0.00 4.79
1894 3429 4.431416 TGCCCTTTAATGATATGACCGT 57.569 40.909 0.00 0.00 0.00 4.83
1895 3430 4.787551 TGCCCTTTAATGATATGACCGTT 58.212 39.130 0.00 0.00 0.00 4.44
1896 3431 5.931294 TGCCCTTTAATGATATGACCGTTA 58.069 37.500 0.00 0.00 0.00 3.18
1897 3432 5.995282 TGCCCTTTAATGATATGACCGTTAG 59.005 40.000 0.00 0.00 0.00 2.34
1898 3433 5.411669 GCCCTTTAATGATATGACCGTTAGG 59.588 44.000 0.00 0.00 45.13 2.69
1914 3449 5.061179 CCGTTAGGTGGGTAGATATTTTGG 58.939 45.833 0.00 0.00 0.00 3.28
1915 3450 5.061179 CGTTAGGTGGGTAGATATTTTGGG 58.939 45.833 0.00 0.00 0.00 4.12
1916 3451 5.163280 CGTTAGGTGGGTAGATATTTTGGGA 60.163 44.000 0.00 0.00 0.00 4.37
1917 3452 4.790718 AGGTGGGTAGATATTTTGGGAC 57.209 45.455 0.00 0.00 0.00 4.46
1918 3453 4.116113 AGGTGGGTAGATATTTTGGGACA 58.884 43.478 0.00 0.00 0.00 4.02
1919 3454 4.166144 AGGTGGGTAGATATTTTGGGACAG 59.834 45.833 0.00 0.00 42.39 3.51
1920 3455 3.883489 GTGGGTAGATATTTTGGGACAGC 59.117 47.826 0.00 0.00 42.39 4.40
1921 3456 3.785887 TGGGTAGATATTTTGGGACAGCT 59.214 43.478 0.00 0.00 42.39 4.24
1922 3457 4.137543 GGGTAGATATTTTGGGACAGCTG 58.862 47.826 13.48 13.48 42.39 4.24
1923 3458 4.137543 GGTAGATATTTTGGGACAGCTGG 58.862 47.826 19.93 0.00 42.39 4.85
1924 3459 2.659428 AGATATTTTGGGACAGCTGGC 58.341 47.619 19.93 16.59 42.39 4.85
1925 3460 1.334869 GATATTTTGGGACAGCTGGCG 59.665 52.381 19.93 0.00 42.39 5.69
1926 3461 1.312371 TATTTTGGGACAGCTGGCGC 61.312 55.000 28.83 28.83 42.39 6.53
1943 3478 3.156334 CGTAGCACAGCAACGGTC 58.844 61.111 0.00 0.00 33.13 4.79
1944 3479 1.663388 CGTAGCACAGCAACGGTCA 60.663 57.895 0.00 0.00 33.13 4.02
1945 3480 1.617755 CGTAGCACAGCAACGGTCAG 61.618 60.000 0.00 0.00 33.13 3.51
1946 3481 0.319555 GTAGCACAGCAACGGTCAGA 60.320 55.000 0.00 0.00 0.00 3.27
1947 3482 0.391228 TAGCACAGCAACGGTCAGAA 59.609 50.000 0.00 0.00 0.00 3.02
1948 3483 0.463654 AGCACAGCAACGGTCAGAAA 60.464 50.000 0.00 0.00 0.00 2.52
1949 3484 0.593128 GCACAGCAACGGTCAGAAAT 59.407 50.000 0.00 0.00 0.00 2.17
1950 3485 1.001378 GCACAGCAACGGTCAGAAATT 60.001 47.619 0.00 0.00 0.00 1.82
1951 3486 2.543653 GCACAGCAACGGTCAGAAATTT 60.544 45.455 0.00 0.00 0.00 1.82
1952 3487 3.044986 CACAGCAACGGTCAGAAATTTG 58.955 45.455 0.00 0.00 0.00 2.32
1953 3488 2.948979 ACAGCAACGGTCAGAAATTTGA 59.051 40.909 0.00 0.00 0.00 2.69
1954 3489 3.243068 ACAGCAACGGTCAGAAATTTGAC 60.243 43.478 0.00 0.00 45.28 3.18
1955 3490 3.003689 CAGCAACGGTCAGAAATTTGACT 59.996 43.478 9.54 0.00 45.32 3.41
1956 3491 4.213270 CAGCAACGGTCAGAAATTTGACTA 59.787 41.667 9.54 0.00 45.32 2.59
1957 3492 5.003804 AGCAACGGTCAGAAATTTGACTAT 58.996 37.500 9.54 0.00 45.32 2.12
1958 3493 5.122396 AGCAACGGTCAGAAATTTGACTATC 59.878 40.000 9.54 0.00 45.32 2.08
1959 3494 5.106712 GCAACGGTCAGAAATTTGACTATCA 60.107 40.000 9.54 0.00 45.32 2.15
1960 3495 6.567701 GCAACGGTCAGAAATTTGACTATCAA 60.568 38.462 9.54 0.00 45.32 2.57
1972 3507 4.778213 TGACTATCAAATTCCTCAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
1973 3508 4.111577 TGACTATCAAATTCCTCAGGGGT 58.888 43.478 0.00 0.00 36.25 4.95
1974 3509 5.285401 TGACTATCAAATTCCTCAGGGGTA 58.715 41.667 0.00 0.00 36.25 3.69
1975 3510 5.911178 TGACTATCAAATTCCTCAGGGGTAT 59.089 40.000 0.00 0.00 36.25 2.73
1976 3511 6.043243 TGACTATCAAATTCCTCAGGGGTATC 59.957 42.308 0.00 0.00 36.25 2.24
1977 3512 5.911178 ACTATCAAATTCCTCAGGGGTATCA 59.089 40.000 0.00 0.00 36.25 2.15
1978 3513 5.937492 ATCAAATTCCTCAGGGGTATCAT 57.063 39.130 0.00 0.00 36.25 2.45
1979 3514 5.052693 TCAAATTCCTCAGGGGTATCATG 57.947 43.478 0.00 0.00 36.25 3.07
1980 3515 4.478317 TCAAATTCCTCAGGGGTATCATGT 59.522 41.667 0.00 0.00 36.25 3.21
1981 3516 5.044179 TCAAATTCCTCAGGGGTATCATGTT 60.044 40.000 0.00 0.00 36.25 2.71
1982 3517 4.713792 ATTCCTCAGGGGTATCATGTTC 57.286 45.455 0.00 0.00 36.25 3.18
1983 3518 2.408565 TCCTCAGGGGTATCATGTTCC 58.591 52.381 0.00 0.00 36.25 3.62
1984 3519 2.022035 TCCTCAGGGGTATCATGTTCCT 60.022 50.000 0.00 0.00 36.25 3.36
1985 3520 2.370189 CCTCAGGGGTATCATGTTCCTC 59.630 54.545 0.00 0.00 0.00 3.71
1986 3521 3.041211 CTCAGGGGTATCATGTTCCTCA 58.959 50.000 0.00 0.00 0.00 3.86
1987 3522 2.771943 TCAGGGGTATCATGTTCCTCAC 59.228 50.000 0.00 0.00 0.00 3.51
1988 3523 2.774234 CAGGGGTATCATGTTCCTCACT 59.226 50.000 0.00 0.00 0.00 3.41
1989 3524 3.200825 CAGGGGTATCATGTTCCTCACTT 59.799 47.826 0.00 0.00 0.00 3.16
1990 3525 3.456277 AGGGGTATCATGTTCCTCACTTC 59.544 47.826 0.00 0.00 0.00 3.01
1991 3526 3.456277 GGGGTATCATGTTCCTCACTTCT 59.544 47.826 0.00 0.00 0.00 2.85
1992 3527 4.654262 GGGGTATCATGTTCCTCACTTCTA 59.346 45.833 0.00 0.00 0.00 2.10
1993 3528 5.221541 GGGGTATCATGTTCCTCACTTCTAG 60.222 48.000 0.00 0.00 0.00 2.43
1994 3529 5.221541 GGGTATCATGTTCCTCACTTCTAGG 60.222 48.000 0.00 0.00 35.26 3.02
1995 3530 3.895232 TCATGTTCCTCACTTCTAGGC 57.105 47.619 0.00 0.00 33.84 3.93
1996 3531 3.173151 TCATGTTCCTCACTTCTAGGCA 58.827 45.455 0.00 0.00 33.84 4.75
1997 3532 3.582647 TCATGTTCCTCACTTCTAGGCAA 59.417 43.478 0.00 0.00 33.84 4.52
1998 3533 4.225942 TCATGTTCCTCACTTCTAGGCAAT 59.774 41.667 0.00 0.00 33.84 3.56
1999 3534 4.207891 TGTTCCTCACTTCTAGGCAATC 57.792 45.455 0.00 0.00 33.84 2.67
2000 3535 3.055094 TGTTCCTCACTTCTAGGCAATCC 60.055 47.826 0.00 0.00 33.84 3.01
2001 3536 1.757118 TCCTCACTTCTAGGCAATCCG 59.243 52.381 0.00 0.00 37.47 4.18
2002 3537 1.576356 CTCACTTCTAGGCAATCCGC 58.424 55.000 0.00 0.00 41.28 5.54
2003 3538 0.901827 TCACTTCTAGGCAATCCGCA 59.098 50.000 0.00 0.00 45.17 5.69
2004 3539 1.009829 CACTTCTAGGCAATCCGCAC 58.990 55.000 0.00 0.00 45.17 5.34
2005 3540 0.905357 ACTTCTAGGCAATCCGCACT 59.095 50.000 0.00 0.00 45.17 4.40
2006 3541 1.134670 ACTTCTAGGCAATCCGCACTC 60.135 52.381 0.00 0.00 45.17 3.51
2007 3542 0.179111 TTCTAGGCAATCCGCACTCG 60.179 55.000 0.00 0.00 45.17 4.18
2008 3543 1.141881 CTAGGCAATCCGCACTCGT 59.858 57.895 0.00 0.00 45.17 4.18
2009 3544 1.148157 CTAGGCAATCCGCACTCGTG 61.148 60.000 0.00 0.00 45.17 4.35
2010 3545 1.600511 TAGGCAATCCGCACTCGTGA 61.601 55.000 0.39 0.00 45.17 4.35
2011 3546 2.032634 GGCAATCCGCACTCGTGAA 61.033 57.895 0.39 0.00 45.17 3.18
2012 3547 1.369091 GGCAATCCGCACTCGTGAAT 61.369 55.000 0.39 0.00 45.17 2.57
2013 3548 0.447801 GCAATCCGCACTCGTGAATT 59.552 50.000 0.39 0.00 41.79 2.17
2014 3549 1.135689 GCAATCCGCACTCGTGAATTT 60.136 47.619 0.39 0.00 41.79 1.82
2015 3550 2.774007 CAATCCGCACTCGTGAATTTC 58.226 47.619 0.39 0.00 0.00 2.17
2016 3551 2.386661 ATCCGCACTCGTGAATTTCT 57.613 45.000 0.39 0.00 0.00 2.52
2017 3552 3.520290 ATCCGCACTCGTGAATTTCTA 57.480 42.857 0.39 0.00 0.00 2.10
2018 3553 3.306917 TCCGCACTCGTGAATTTCTAA 57.693 42.857 0.39 0.00 0.00 2.10
2019 3554 2.991190 TCCGCACTCGTGAATTTCTAAC 59.009 45.455 0.39 0.00 0.00 2.34
2020 3555 2.993899 CCGCACTCGTGAATTTCTAACT 59.006 45.455 0.39 0.00 0.00 2.24
2021 3556 3.060895 CCGCACTCGTGAATTTCTAACTC 59.939 47.826 0.39 0.00 0.00 3.01
2022 3557 3.060895 CGCACTCGTGAATTTCTAACTCC 59.939 47.826 0.39 0.00 0.00 3.85
2023 3558 4.246458 GCACTCGTGAATTTCTAACTCCT 58.754 43.478 0.39 0.00 0.00 3.69
2024 3559 4.327627 GCACTCGTGAATTTCTAACTCCTC 59.672 45.833 0.39 0.00 0.00 3.71
2025 3560 5.470368 CACTCGTGAATTTCTAACTCCTCA 58.530 41.667 0.00 0.00 0.00 3.86
2026 3561 5.574830 CACTCGTGAATTTCTAACTCCTCAG 59.425 44.000 0.00 0.00 0.00 3.35
2027 3562 5.244178 ACTCGTGAATTTCTAACTCCTCAGT 59.756 40.000 0.00 0.00 0.00 3.41
2028 3563 6.097915 TCGTGAATTTCTAACTCCTCAGTT 57.902 37.500 0.00 0.00 45.39 3.16
2029 3564 7.039923 ACTCGTGAATTTCTAACTCCTCAGTTA 60.040 37.037 0.00 0.00 41.39 2.24
2041 3576 6.441088 ACTCCTCAGTTAGAACAAATTCCT 57.559 37.500 0.00 0.00 35.18 3.36
2042 3577 6.468543 ACTCCTCAGTTAGAACAAATTCCTC 58.531 40.000 0.00 0.00 35.18 3.71
2043 3578 6.043243 ACTCCTCAGTTAGAACAAATTCCTCA 59.957 38.462 0.00 0.00 35.18 3.86
2044 3579 6.467677 TCCTCAGTTAGAACAAATTCCTCAG 58.532 40.000 0.00 0.00 35.18 3.35
2045 3580 6.270000 TCCTCAGTTAGAACAAATTCCTCAGA 59.730 38.462 0.00 0.00 35.18 3.27
2046 3581 6.593382 CCTCAGTTAGAACAAATTCCTCAGAG 59.407 42.308 0.00 0.00 35.18 3.35
2047 3582 7.303182 TCAGTTAGAACAAATTCCTCAGAGA 57.697 36.000 0.00 0.00 35.18 3.10
2048 3583 7.155328 TCAGTTAGAACAAATTCCTCAGAGAC 58.845 38.462 0.00 0.00 35.18 3.36
2049 3584 7.015682 TCAGTTAGAACAAATTCCTCAGAGACT 59.984 37.037 0.00 0.00 35.18 3.24
2050 3585 8.307483 CAGTTAGAACAAATTCCTCAGAGACTA 58.693 37.037 0.00 0.00 35.18 2.59
2051 3586 8.527810 AGTTAGAACAAATTCCTCAGAGACTAG 58.472 37.037 0.00 0.00 35.18 2.57
2052 3587 8.524487 GTTAGAACAAATTCCTCAGAGACTAGA 58.476 37.037 0.00 0.00 35.18 2.43
2053 3588 7.546250 AGAACAAATTCCTCAGAGACTAGAA 57.454 36.000 0.00 0.00 35.18 2.10
2054 3589 7.610865 AGAACAAATTCCTCAGAGACTAGAAG 58.389 38.462 0.00 0.00 35.18 2.85
2055 3590 7.453126 AGAACAAATTCCTCAGAGACTAGAAGA 59.547 37.037 0.00 0.00 35.18 2.87
2056 3591 7.169158 ACAAATTCCTCAGAGACTAGAAGAG 57.831 40.000 0.00 0.00 0.00 2.85
2057 3592 5.852282 AATTCCTCAGAGACTAGAAGAGC 57.148 43.478 0.00 0.00 0.00 4.09
2058 3593 4.584638 TTCCTCAGAGACTAGAAGAGCT 57.415 45.455 0.00 0.00 0.00 4.09
2059 3594 4.584638 TCCTCAGAGACTAGAAGAGCTT 57.415 45.455 0.00 0.00 0.00 3.74
2060 3595 4.523083 TCCTCAGAGACTAGAAGAGCTTC 58.477 47.826 0.00 2.03 39.78 3.86
2061 3596 3.312421 CCTCAGAGACTAGAAGAGCTTCG 59.688 52.174 0.00 0.00 43.97 3.79
2062 3597 3.938963 CTCAGAGACTAGAAGAGCTTCGT 59.061 47.826 0.00 0.00 43.97 3.85
2063 3598 3.936453 TCAGAGACTAGAAGAGCTTCGTC 59.064 47.826 0.00 7.22 43.97 4.20
2064 3599 3.938963 CAGAGACTAGAAGAGCTTCGTCT 59.061 47.826 15.82 15.82 43.97 4.18
2065 3600 4.034048 CAGAGACTAGAAGAGCTTCGTCTC 59.966 50.000 24.94 24.94 46.11 3.36
2066 3601 4.189231 GAGACTAGAAGAGCTTCGTCTCT 58.811 47.826 24.99 16.76 44.47 3.10
2067 3602 3.938963 AGACTAGAAGAGCTTCGTCTCTG 59.061 47.826 12.20 3.99 42.25 3.35
2068 3603 3.681593 ACTAGAAGAGCTTCGTCTCTGT 58.318 45.455 0.00 4.44 42.25 3.41
2069 3604 3.687698 ACTAGAAGAGCTTCGTCTCTGTC 59.312 47.826 0.00 6.08 42.25 3.51
2070 3605 2.509569 AGAAGAGCTTCGTCTCTGTCA 58.490 47.619 4.71 0.00 42.25 3.58
2071 3606 2.227865 AGAAGAGCTTCGTCTCTGTCAC 59.772 50.000 4.71 0.90 42.25 3.67
2072 3607 1.904287 AGAGCTTCGTCTCTGTCACT 58.096 50.000 0.00 0.00 41.57 3.41
2073 3608 3.060736 AGAGCTTCGTCTCTGTCACTA 57.939 47.619 0.00 0.00 41.57 2.74
2074 3609 3.413327 AGAGCTTCGTCTCTGTCACTAA 58.587 45.455 0.00 0.00 41.57 2.24
2075 3610 3.821600 AGAGCTTCGTCTCTGTCACTAAA 59.178 43.478 0.00 0.00 41.57 1.85
2076 3611 4.461081 AGAGCTTCGTCTCTGTCACTAAAT 59.539 41.667 0.00 0.00 41.57 1.40
2077 3612 5.648526 AGAGCTTCGTCTCTGTCACTAAATA 59.351 40.000 0.00 0.00 41.57 1.40
2078 3613 6.151312 AGAGCTTCGTCTCTGTCACTAAATAA 59.849 38.462 0.00 0.00 41.57 1.40
2079 3614 6.688578 AGCTTCGTCTCTGTCACTAAATAAA 58.311 36.000 0.00 0.00 0.00 1.40
2080 3615 7.324178 AGCTTCGTCTCTGTCACTAAATAAAT 58.676 34.615 0.00 0.00 0.00 1.40
2081 3616 7.819900 AGCTTCGTCTCTGTCACTAAATAAATT 59.180 33.333 0.00 0.00 0.00 1.82
2082 3617 7.900352 GCTTCGTCTCTGTCACTAAATAAATTG 59.100 37.037 0.00 0.00 0.00 2.32
2083 3618 9.140286 CTTCGTCTCTGTCACTAAATAAATTGA 57.860 33.333 0.00 0.00 0.00 2.57
2084 3619 8.462143 TCGTCTCTGTCACTAAATAAATTGAC 57.538 34.615 0.00 0.00 39.09 3.18
2085 3620 8.304596 TCGTCTCTGTCACTAAATAAATTGACT 58.695 33.333 0.00 0.00 39.33 3.41
2086 3621 8.376203 CGTCTCTGTCACTAAATAAATTGACTG 58.624 37.037 0.00 0.00 39.33 3.51
2087 3622 9.424319 GTCTCTGTCACTAAATAAATTGACTGA 57.576 33.333 9.05 9.05 41.71 3.41
2088 3623 9.996554 TCTCTGTCACTAAATAAATTGACTGAA 57.003 29.630 10.21 2.10 42.66 3.02
2090 3625 9.778741 TCTGTCACTAAATAAATTGACTGAACT 57.221 29.630 7.45 0.00 41.30 3.01
2103 3638 7.856145 ATTGACTGAACTACATGAGATTTCC 57.144 36.000 0.00 0.00 0.00 3.13
2104 3639 6.358974 TGACTGAACTACATGAGATTTCCA 57.641 37.500 0.00 0.00 0.00 3.53
2105 3640 6.768483 TGACTGAACTACATGAGATTTCCAA 58.232 36.000 0.00 0.00 0.00 3.53
2106 3641 7.397221 TGACTGAACTACATGAGATTTCCAAT 58.603 34.615 0.00 0.00 0.00 3.16
2107 3642 7.335171 TGACTGAACTACATGAGATTTCCAATG 59.665 37.037 0.00 0.00 0.00 2.82
2108 3643 6.600822 ACTGAACTACATGAGATTTCCAATGG 59.399 38.462 0.00 0.00 0.00 3.16
2109 3644 5.357878 TGAACTACATGAGATTTCCAATGGC 59.642 40.000 0.00 0.00 0.00 4.40
2110 3645 5.121380 ACTACATGAGATTTCCAATGGCT 57.879 39.130 0.00 0.00 0.00 4.75
2111 3646 5.513233 ACTACATGAGATTTCCAATGGCTT 58.487 37.500 0.00 0.00 0.00 4.35
2112 3647 4.996788 ACATGAGATTTCCAATGGCTTC 57.003 40.909 0.00 0.00 0.00 3.86
2113 3648 4.346730 ACATGAGATTTCCAATGGCTTCA 58.653 39.130 0.00 0.00 0.00 3.02
2114 3649 4.159135 ACATGAGATTTCCAATGGCTTCAC 59.841 41.667 0.00 0.00 0.00 3.18
2115 3650 4.038271 TGAGATTTCCAATGGCTTCACT 57.962 40.909 0.00 0.00 0.00 3.41
2116 3651 4.012374 TGAGATTTCCAATGGCTTCACTC 58.988 43.478 0.00 0.79 0.00 3.51
2117 3652 3.012518 AGATTTCCAATGGCTTCACTCG 58.987 45.455 0.00 0.00 0.00 4.18
2118 3653 2.559698 TTTCCAATGGCTTCACTCGA 57.440 45.000 0.00 0.00 0.00 4.04
2119 3654 2.559698 TTCCAATGGCTTCACTCGAA 57.440 45.000 0.00 0.00 0.00 3.71
2128 3663 2.770164 CTTCACTCGAAGGGATTGGT 57.230 50.000 0.00 0.00 44.25 3.67
2129 3664 3.887621 CTTCACTCGAAGGGATTGGTA 57.112 47.619 0.00 0.00 44.25 3.25
2130 3665 3.786635 CTTCACTCGAAGGGATTGGTAG 58.213 50.000 0.00 0.00 44.25 3.18
2131 3666 2.108168 TCACTCGAAGGGATTGGTAGG 58.892 52.381 0.00 0.00 0.00 3.18
2132 3667 1.831736 CACTCGAAGGGATTGGTAGGT 59.168 52.381 0.00 0.00 0.00 3.08
2133 3668 1.831736 ACTCGAAGGGATTGGTAGGTG 59.168 52.381 0.00 0.00 0.00 4.00
2134 3669 1.831736 CTCGAAGGGATTGGTAGGTGT 59.168 52.381 0.00 0.00 0.00 4.16
2135 3670 3.028850 CTCGAAGGGATTGGTAGGTGTA 58.971 50.000 0.00 0.00 0.00 2.90
2136 3671 3.028850 TCGAAGGGATTGGTAGGTGTAG 58.971 50.000 0.00 0.00 0.00 2.74
2137 3672 2.102588 CGAAGGGATTGGTAGGTGTAGG 59.897 54.545 0.00 0.00 0.00 3.18
2138 3673 3.381335 GAAGGGATTGGTAGGTGTAGGA 58.619 50.000 0.00 0.00 0.00 2.94
2139 3674 3.726837 AGGGATTGGTAGGTGTAGGAT 57.273 47.619 0.00 0.00 0.00 3.24
2140 3675 4.022359 AGGGATTGGTAGGTGTAGGATT 57.978 45.455 0.00 0.00 0.00 3.01
2141 3676 4.380791 AGGGATTGGTAGGTGTAGGATTT 58.619 43.478 0.00 0.00 0.00 2.17
2142 3677 4.794067 AGGGATTGGTAGGTGTAGGATTTT 59.206 41.667 0.00 0.00 0.00 1.82
2143 3678 4.887655 GGGATTGGTAGGTGTAGGATTTTG 59.112 45.833 0.00 0.00 0.00 2.44
2144 3679 5.339695 GGGATTGGTAGGTGTAGGATTTTGA 60.340 44.000 0.00 0.00 0.00 2.69
2145 3680 5.823045 GGATTGGTAGGTGTAGGATTTTGAG 59.177 44.000 0.00 0.00 0.00 3.02
2146 3681 5.836024 TTGGTAGGTGTAGGATTTTGAGT 57.164 39.130 0.00 0.00 0.00 3.41
2147 3682 5.836024 TGGTAGGTGTAGGATTTTGAGTT 57.164 39.130 0.00 0.00 0.00 3.01
2148 3683 5.556915 TGGTAGGTGTAGGATTTTGAGTTG 58.443 41.667 0.00 0.00 0.00 3.16
2149 3684 5.308497 TGGTAGGTGTAGGATTTTGAGTTGA 59.692 40.000 0.00 0.00 0.00 3.18
2150 3685 5.875359 GGTAGGTGTAGGATTTTGAGTTGAG 59.125 44.000 0.00 0.00 0.00 3.02
2151 3686 4.327680 AGGTGTAGGATTTTGAGTTGAGC 58.672 43.478 0.00 0.00 0.00 4.26
2152 3687 4.072131 GGTGTAGGATTTTGAGTTGAGCA 58.928 43.478 0.00 0.00 0.00 4.26
2153 3688 4.702131 GGTGTAGGATTTTGAGTTGAGCAT 59.298 41.667 0.00 0.00 0.00 3.79
2154 3689 5.163713 GGTGTAGGATTTTGAGTTGAGCATC 60.164 44.000 0.00 0.00 0.00 3.91
2169 3704 5.186996 TGAGCATCACTTGGAAACTTTTC 57.813 39.130 0.00 0.00 42.56 2.29
2170 3705 4.550422 GAGCATCACTTGGAAACTTTTCC 58.450 43.478 13.05 13.05 45.78 3.13
2171 3706 4.279420 GAGCATCACTTGGAAACTTTTCCT 59.721 41.667 19.23 0.00 45.77 3.36
2172 3707 5.221322 GAGCATCACTTGGAAACTTTTCCTT 60.221 40.000 19.23 3.91 45.77 3.36
2173 3708 7.227087 GAGCATCACTTGGAAACTTTTCCTTG 61.227 42.308 19.23 14.20 45.77 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.141959 ACCTTGACACCACCAAAATTTGAG 60.142 41.667 7.37 0.20 0.00 3.02
8 9 6.964464 ACATAATATACCTTGACACCACCAA 58.036 36.000 0.00 0.00 0.00 3.67
9 10 6.569127 ACATAATATACCTTGACACCACCA 57.431 37.500 0.00 0.00 0.00 4.17
10 11 7.732996 AGTACATAATATACCTTGACACCACC 58.267 38.462 0.00 0.00 0.00 4.61
31 32 8.648097 CACAGTACAAACATGAAGTATGAGTAC 58.352 37.037 0.00 0.00 39.87 2.73
37 38 7.064609 CGGAATCACAGTACAAACATGAAGTAT 59.935 37.037 0.00 0.00 29.77 2.12
48 49 4.876679 TGACAAAACGGAATCACAGTACAA 59.123 37.500 0.00 0.00 0.00 2.41
61 62 7.593273 ACAACATGTGTATAAATGACAAAACGG 59.407 33.333 0.00 0.00 39.29 4.44
62 63 8.500837 ACAACATGTGTATAAATGACAAAACG 57.499 30.769 0.00 0.00 39.29 3.60
514 515 7.353414 TCATTTTAAGTCCATGTCCAACAAA 57.647 32.000 0.00 0.00 0.00 2.83
583 584 6.048732 TGATAACACAGTAGAGAAATGCCA 57.951 37.500 0.00 0.00 0.00 4.92
722 2183 1.328069 TGTTCGCCTACACAAAACACG 59.672 47.619 0.00 0.00 0.00 4.49
738 2199 1.210155 GGCACGTGCATCCTTGTTC 59.790 57.895 38.60 16.62 44.36 3.18
841 2302 3.817647 GGTTCTTGAACACATTCAGCTCT 59.182 43.478 14.38 0.00 45.54 4.09
871 2332 3.118261 AGAGCTTCTTCAACAACAGGTGA 60.118 43.478 0.00 0.00 0.00 4.02
949 2410 6.703857 CGTCATCAAAAGACATCTTCATCTC 58.296 40.000 0.00 0.00 34.61 2.75
987 2448 0.991146 TTGGCATAGGAAGTGGCTCA 59.009 50.000 0.00 0.00 42.13 4.26
1320 2816 9.563748 AAATAAATATGGAAAATGGAAGCATGG 57.436 29.630 0.00 0.00 0.00 3.66
1357 2855 8.655651 TGTTCCAAATAAGGTCAAAACAATTC 57.344 30.769 0.00 0.00 0.00 2.17
1498 3033 3.181476 GGATGTACAAACCATGGGATTGC 60.181 47.826 24.55 14.25 38.74 3.56
1503 3038 5.451798 GCTATTTGGATGTACAAACCATGGG 60.452 44.000 18.09 13.86 42.51 4.00
1524 3059 4.640201 GGTAGCACTCAATTCCAATTGCTA 59.360 41.667 7.10 3.83 44.15 3.49
1600 3135 2.584498 AGATGGAAAGGAAATGGGCTCT 59.416 45.455 0.00 0.00 0.00 4.09
1636 3171 3.256558 GCTTGGAATTGAATTGGACTGC 58.743 45.455 0.00 0.00 0.00 4.40
1665 3200 1.156736 ACGCTGTGTTTGGATGTAGC 58.843 50.000 0.00 0.00 0.00 3.58
1686 3221 0.250124 CGCAAACACCTACAGACCCA 60.250 55.000 0.00 0.00 0.00 4.51
1690 3225 1.944024 CCAAACGCAAACACCTACAGA 59.056 47.619 0.00 0.00 0.00 3.41
1691 3226 1.001815 CCCAAACGCAAACACCTACAG 60.002 52.381 0.00 0.00 0.00 2.74
1692 3227 1.025812 CCCAAACGCAAACACCTACA 58.974 50.000 0.00 0.00 0.00 2.74
1693 3228 1.026584 ACCCAAACGCAAACACCTAC 58.973 50.000 0.00 0.00 0.00 3.18
1694 3229 1.765230 AACCCAAACGCAAACACCTA 58.235 45.000 0.00 0.00 0.00 3.08
1695 3230 0.899019 AAACCCAAACGCAAACACCT 59.101 45.000 0.00 0.00 0.00 4.00
1696 3231 1.395262 CAAAACCCAAACGCAAACACC 59.605 47.619 0.00 0.00 0.00 4.16
1697 3232 1.395262 CCAAAACCCAAACGCAAACAC 59.605 47.619 0.00 0.00 0.00 3.32
1698 3233 1.002087 ACCAAAACCCAAACGCAAACA 59.998 42.857 0.00 0.00 0.00 2.83
1699 3234 1.728068 ACCAAAACCCAAACGCAAAC 58.272 45.000 0.00 0.00 0.00 2.93
1700 3235 2.474410 AACCAAAACCCAAACGCAAA 57.526 40.000 0.00 0.00 0.00 3.68
1701 3236 2.474410 AAACCAAAACCCAAACGCAA 57.526 40.000 0.00 0.00 0.00 4.85
1702 3237 2.347731 GAAAACCAAAACCCAAACGCA 58.652 42.857 0.00 0.00 0.00 5.24
1703 3238 1.666700 GGAAAACCAAAACCCAAACGC 59.333 47.619 0.00 0.00 0.00 4.84
1704 3239 3.191669 GAGGAAAACCAAAACCCAAACG 58.808 45.455 0.00 0.00 0.00 3.60
1705 3240 3.936453 GTGAGGAAAACCAAAACCCAAAC 59.064 43.478 0.00 0.00 0.00 2.93
1706 3241 3.841255 AGTGAGGAAAACCAAAACCCAAA 59.159 39.130 0.00 0.00 0.00 3.28
1707 3242 3.445987 AGTGAGGAAAACCAAAACCCAA 58.554 40.909 0.00 0.00 0.00 4.12
1708 3243 3.108847 AGTGAGGAAAACCAAAACCCA 57.891 42.857 0.00 0.00 0.00 4.51
1709 3244 3.449377 TCAAGTGAGGAAAACCAAAACCC 59.551 43.478 0.00 0.00 0.00 4.11
1710 3245 4.729227 TCAAGTGAGGAAAACCAAAACC 57.271 40.909 0.00 0.00 0.00 3.27
1711 3246 5.901552 TCATCAAGTGAGGAAAACCAAAAC 58.098 37.500 0.00 0.00 31.35 2.43
1712 3247 6.729690 ATCATCAAGTGAGGAAAACCAAAA 57.270 33.333 0.00 0.00 40.92 2.44
1713 3248 6.729690 AATCATCAAGTGAGGAAAACCAAA 57.270 33.333 0.00 0.00 40.92 3.28
1714 3249 6.729690 AAATCATCAAGTGAGGAAAACCAA 57.270 33.333 0.00 0.00 40.92 3.67
1715 3250 6.729690 AAAATCATCAAGTGAGGAAAACCA 57.270 33.333 0.00 0.00 40.92 3.67
1716 3251 7.209475 TCAAAAATCATCAAGTGAGGAAAACC 58.791 34.615 0.00 0.00 40.92 3.27
1717 3252 8.822652 ATCAAAAATCATCAAGTGAGGAAAAC 57.177 30.769 0.00 0.00 40.92 2.43
1718 3253 8.640651 TGATCAAAAATCATCAAGTGAGGAAAA 58.359 29.630 0.00 0.00 40.92 2.29
1719 3254 8.180706 TGATCAAAAATCATCAAGTGAGGAAA 57.819 30.769 0.00 0.00 40.92 3.13
1720 3255 7.764141 TGATCAAAAATCATCAAGTGAGGAA 57.236 32.000 0.00 0.00 40.92 3.36
1721 3256 7.764141 TTGATCAAAAATCATCAAGTGAGGA 57.236 32.000 5.45 0.00 40.92 3.71
1722 3257 8.086522 ACTTTGATCAAAAATCATCAAGTGAGG 58.913 33.333 20.82 6.82 39.58 3.86
1723 3258 9.125906 GACTTTGATCAAAAATCATCAAGTGAG 57.874 33.333 20.82 7.30 39.58 3.51
1724 3259 8.084073 GGACTTTGATCAAAAATCATCAAGTGA 58.916 33.333 20.82 0.00 39.58 3.41
1725 3260 8.086522 AGGACTTTGATCAAAAATCATCAAGTG 58.913 33.333 20.82 7.97 39.58 3.16
1726 3261 8.186709 AGGACTTTGATCAAAAATCATCAAGT 57.813 30.769 20.82 12.04 39.58 3.16
1727 3262 7.484007 CGAGGACTTTGATCAAAAATCATCAAG 59.516 37.037 28.33 18.12 39.58 3.02
1728 3263 7.307694 CGAGGACTTTGATCAAAAATCATCAA 58.692 34.615 28.33 8.35 37.26 2.57
1729 3264 6.127925 CCGAGGACTTTGATCAAAAATCATCA 60.128 38.462 28.33 8.90 31.36 3.07
1730 3265 6.094048 TCCGAGGACTTTGATCAAAAATCATC 59.906 38.462 23.84 23.84 0.00 2.92
1731 3266 5.945784 TCCGAGGACTTTGATCAAAAATCAT 59.054 36.000 20.82 17.79 0.00 2.45
1732 3267 5.312895 TCCGAGGACTTTGATCAAAAATCA 58.687 37.500 20.82 0.00 0.00 2.57
1733 3268 5.163713 CCTCCGAGGACTTTGATCAAAAATC 60.164 44.000 20.82 19.15 37.67 2.17
1734 3269 4.702131 CCTCCGAGGACTTTGATCAAAAAT 59.298 41.667 20.82 12.52 37.67 1.82
1735 3270 4.072131 CCTCCGAGGACTTTGATCAAAAA 58.928 43.478 20.82 0.94 37.67 1.94
1736 3271 3.326588 TCCTCCGAGGACTTTGATCAAAA 59.673 43.478 20.82 6.29 40.06 2.44
1737 3272 2.903784 TCCTCCGAGGACTTTGATCAAA 59.096 45.455 19.45 19.45 40.06 2.69
1738 3273 2.536066 TCCTCCGAGGACTTTGATCAA 58.464 47.619 13.54 3.38 40.06 2.57
1739 3274 2.231716 TCCTCCGAGGACTTTGATCA 57.768 50.000 13.54 0.00 40.06 2.92
1749 3284 1.825281 GAGCATCCCATCCTCCGAGG 61.825 65.000 8.30 8.30 36.46 4.63
1750 3285 0.831288 AGAGCATCCCATCCTCCGAG 60.831 60.000 0.00 0.00 33.66 4.63
1751 3286 0.829602 GAGAGCATCCCATCCTCCGA 60.830 60.000 0.00 0.00 33.66 4.55
1752 3287 1.117749 TGAGAGCATCCCATCCTCCG 61.118 60.000 0.00 0.00 33.66 4.63
1753 3288 1.135094 TTGAGAGCATCCCATCCTCC 58.865 55.000 0.00 0.00 33.66 4.30
1754 3289 3.147629 CATTTGAGAGCATCCCATCCTC 58.852 50.000 0.00 0.00 33.66 3.71
1755 3290 2.781757 TCATTTGAGAGCATCCCATCCT 59.218 45.455 0.00 0.00 33.66 3.24
1756 3291 2.883386 GTCATTTGAGAGCATCCCATCC 59.117 50.000 0.00 0.00 33.66 3.51
1757 3292 3.548770 TGTCATTTGAGAGCATCCCATC 58.451 45.455 0.00 0.00 33.66 3.51
1758 3293 3.657398 TGTCATTTGAGAGCATCCCAT 57.343 42.857 0.00 0.00 33.66 4.00
1759 3294 3.245016 ACTTGTCATTTGAGAGCATCCCA 60.245 43.478 0.00 0.00 33.66 4.37
1760 3295 3.128242 CACTTGTCATTTGAGAGCATCCC 59.872 47.826 0.00 0.00 33.66 3.85
1761 3296 3.755378 ACACTTGTCATTTGAGAGCATCC 59.245 43.478 0.00 0.00 33.66 3.51
1762 3297 4.967437 GACACTTGTCATTTGAGAGCATC 58.033 43.478 4.43 0.00 44.18 3.91
1775 3310 3.053455 CCGAGAGAAACTGACACTTGTC 58.947 50.000 2.19 2.19 44.97 3.18
1776 3311 2.693591 TCCGAGAGAAACTGACACTTGT 59.306 45.455 0.00 0.00 0.00 3.16
1777 3312 3.312828 CTCCGAGAGAAACTGACACTTG 58.687 50.000 0.00 0.00 0.00 3.16
1778 3313 2.288518 GCTCCGAGAGAAACTGACACTT 60.289 50.000 0.00 0.00 0.00 3.16
1779 3314 1.271102 GCTCCGAGAGAAACTGACACT 59.729 52.381 0.00 0.00 0.00 3.55
1780 3315 1.000163 TGCTCCGAGAGAAACTGACAC 60.000 52.381 0.00 0.00 0.00 3.67
1781 3316 1.270826 CTGCTCCGAGAGAAACTGACA 59.729 52.381 0.00 0.00 0.00 3.58
1782 3317 1.989430 CTGCTCCGAGAGAAACTGAC 58.011 55.000 0.00 0.00 0.00 3.51
1783 3318 0.244994 GCTGCTCCGAGAGAAACTGA 59.755 55.000 0.00 0.00 0.00 3.41
1784 3319 0.739112 GGCTGCTCCGAGAGAAACTG 60.739 60.000 0.00 0.00 0.00 3.16
1785 3320 1.188219 TGGCTGCTCCGAGAGAAACT 61.188 55.000 0.00 0.00 37.80 2.66
1786 3321 0.320771 TTGGCTGCTCCGAGAGAAAC 60.321 55.000 0.00 0.00 37.80 2.78
1787 3322 0.320771 GTTGGCTGCTCCGAGAGAAA 60.321 55.000 0.00 0.00 37.80 2.52
1788 3323 1.293498 GTTGGCTGCTCCGAGAGAA 59.707 57.895 0.00 0.00 37.80 2.87
1789 3324 2.650116 GGTTGGCTGCTCCGAGAGA 61.650 63.158 0.00 0.00 37.80 3.10
1790 3325 2.125350 GGTTGGCTGCTCCGAGAG 60.125 66.667 0.00 0.00 37.80 3.20
1791 3326 2.922503 TGGTTGGCTGCTCCGAGA 60.923 61.111 0.00 0.00 37.80 4.04
1792 3327 2.435586 CTGGTTGGCTGCTCCGAG 60.436 66.667 0.00 0.00 37.80 4.63
1793 3328 4.704833 GCTGGTTGGCTGCTCCGA 62.705 66.667 0.00 0.00 37.80 4.55
1794 3329 3.315142 TAGCTGGTTGGCTGCTCCG 62.315 63.158 0.00 0.00 43.01 4.63
1795 3330 1.451028 CTAGCTGGTTGGCTGCTCC 60.451 63.158 0.00 0.92 43.01 4.70
1796 3331 1.023513 CACTAGCTGGTTGGCTGCTC 61.024 60.000 0.00 0.00 43.01 4.26
1797 3332 1.002868 CACTAGCTGGTTGGCTGCT 60.003 57.895 0.00 0.00 43.01 4.24
1798 3333 0.393537 ATCACTAGCTGGTTGGCTGC 60.394 55.000 0.00 0.00 43.01 5.25
1799 3334 1.741706 CAATCACTAGCTGGTTGGCTG 59.258 52.381 0.00 0.00 43.01 4.85
1800 3335 1.352352 ACAATCACTAGCTGGTTGGCT 59.648 47.619 17.18 0.00 44.37 4.75
1801 3336 1.826385 ACAATCACTAGCTGGTTGGC 58.174 50.000 17.18 0.00 44.37 4.52
1802 3337 3.535561 CCTACAATCACTAGCTGGTTGG 58.464 50.000 17.18 0.00 44.37 3.77
1803 3338 3.535561 CCCTACAATCACTAGCTGGTTG 58.464 50.000 0.00 13.47 45.43 3.77
1804 3339 2.505819 CCCCTACAATCACTAGCTGGTT 59.494 50.000 0.00 0.00 0.00 3.67
1805 3340 2.119495 CCCCTACAATCACTAGCTGGT 58.881 52.381 0.00 0.00 0.00 4.00
1806 3341 1.417890 CCCCCTACAATCACTAGCTGG 59.582 57.143 0.00 0.00 0.00 4.85
1807 3342 1.202698 GCCCCCTACAATCACTAGCTG 60.203 57.143 0.00 0.00 0.00 4.24
1808 3343 1.132500 GCCCCCTACAATCACTAGCT 58.868 55.000 0.00 0.00 0.00 3.32
1809 3344 0.249911 CGCCCCCTACAATCACTAGC 60.250 60.000 0.00 0.00 0.00 3.42
1810 3345 0.393077 CCGCCCCCTACAATCACTAG 59.607 60.000 0.00 0.00 0.00 2.57
1811 3346 1.692173 GCCGCCCCCTACAATCACTA 61.692 60.000 0.00 0.00 0.00 2.74
1812 3347 3.043999 GCCGCCCCCTACAATCACT 62.044 63.158 0.00 0.00 0.00 3.41
1813 3348 1.692173 TAGCCGCCCCCTACAATCAC 61.692 60.000 0.00 0.00 0.00 3.06
1814 3349 0.766674 ATAGCCGCCCCCTACAATCA 60.767 55.000 0.00 0.00 0.00 2.57
1815 3350 0.400594 AATAGCCGCCCCCTACAATC 59.599 55.000 0.00 0.00 0.00 2.67
1816 3351 0.850784 AAATAGCCGCCCCCTACAAT 59.149 50.000 0.00 0.00 0.00 2.71
1817 3352 1.509373 TAAATAGCCGCCCCCTACAA 58.491 50.000 0.00 0.00 0.00 2.41
1818 3353 1.737199 ATAAATAGCCGCCCCCTACA 58.263 50.000 0.00 0.00 0.00 2.74
1819 3354 3.538634 CTATAAATAGCCGCCCCCTAC 57.461 52.381 0.00 0.00 0.00 3.18
1830 3365 4.141824 GGCTGCTCCCTAGGCTATAAATAG 60.142 50.000 2.05 0.00 37.70 1.73
1831 3366 3.775316 GGCTGCTCCCTAGGCTATAAATA 59.225 47.826 2.05 0.00 37.70 1.40
1832 3367 2.573915 GGCTGCTCCCTAGGCTATAAAT 59.426 50.000 2.05 0.00 37.70 1.40
1833 3368 1.978580 GGCTGCTCCCTAGGCTATAAA 59.021 52.381 2.05 0.00 37.70 1.40
1834 3369 1.645710 GGCTGCTCCCTAGGCTATAA 58.354 55.000 2.05 0.00 37.70 0.98
1835 3370 3.383162 GGCTGCTCCCTAGGCTATA 57.617 57.895 2.05 0.00 37.70 1.31
1836 3371 4.224105 GGCTGCTCCCTAGGCTAT 57.776 61.111 2.05 0.00 37.70 2.97
1845 3380 0.106708 TTATCATGTCGGGCTGCTCC 59.893 55.000 0.00 0.00 0.00 4.70
1846 3381 1.069204 TCTTATCATGTCGGGCTGCTC 59.931 52.381 0.00 0.00 0.00 4.26
1847 3382 1.123077 TCTTATCATGTCGGGCTGCT 58.877 50.000 0.00 0.00 0.00 4.24
1848 3383 1.221414 GTCTTATCATGTCGGGCTGC 58.779 55.000 0.00 0.00 0.00 5.25
1849 3384 2.602257 TGTCTTATCATGTCGGGCTG 57.398 50.000 0.00 0.00 0.00 4.85
1850 3385 4.955811 TTATGTCTTATCATGTCGGGCT 57.044 40.909 0.00 0.00 0.00 5.19
1851 3386 5.617751 GCATTTATGTCTTATCATGTCGGGC 60.618 44.000 0.00 0.00 0.00 6.13
1852 3387 5.106555 GGCATTTATGTCTTATCATGTCGGG 60.107 44.000 0.00 0.00 0.00 5.14
1853 3388 5.106555 GGGCATTTATGTCTTATCATGTCGG 60.107 44.000 0.00 0.00 31.84 4.79
1854 3389 5.702670 AGGGCATTTATGTCTTATCATGTCG 59.297 40.000 0.00 0.00 31.84 4.35
1855 3390 7.516198 AAGGGCATTTATGTCTTATCATGTC 57.484 36.000 0.00 0.00 31.84 3.06
1856 3391 7.902920 AAAGGGCATTTATGTCTTATCATGT 57.097 32.000 0.00 0.00 31.84 3.21
1859 3394 9.639563 TCATTAAAGGGCATTTATGTCTTATCA 57.360 29.630 5.07 0.00 33.40 2.15
1864 3399 9.812347 TCATATCATTAAAGGGCATTTATGTCT 57.188 29.630 5.07 2.71 33.40 3.41
1865 3400 9.846248 GTCATATCATTAAAGGGCATTTATGTC 57.154 33.333 5.07 0.00 33.40 3.06
1866 3401 8.806146 GGTCATATCATTAAAGGGCATTTATGT 58.194 33.333 5.07 0.00 33.40 2.29
1867 3402 7.970061 CGGTCATATCATTAAAGGGCATTTATG 59.030 37.037 5.07 6.49 33.40 1.90
1868 3403 7.669722 ACGGTCATATCATTAAAGGGCATTTAT 59.330 33.333 5.07 0.00 33.40 1.40
1869 3404 7.001674 ACGGTCATATCATTAAAGGGCATTTA 58.998 34.615 0.00 0.00 32.01 1.40
1870 3405 5.833131 ACGGTCATATCATTAAAGGGCATTT 59.167 36.000 1.66 1.66 34.72 2.32
1871 3406 5.385198 ACGGTCATATCATTAAAGGGCATT 58.615 37.500 0.00 0.00 0.00 3.56
1872 3407 4.985538 ACGGTCATATCATTAAAGGGCAT 58.014 39.130 0.00 0.00 0.00 4.40
1873 3408 4.431416 ACGGTCATATCATTAAAGGGCA 57.569 40.909 0.00 0.00 0.00 5.36
1874 3409 5.411669 CCTAACGGTCATATCATTAAAGGGC 59.588 44.000 0.00 0.00 0.00 5.19
1875 3410 6.426937 CACCTAACGGTCATATCATTAAAGGG 59.573 42.308 0.00 0.00 43.24 3.95
1876 3411 6.426937 CCACCTAACGGTCATATCATTAAAGG 59.573 42.308 0.00 0.00 43.24 3.11
1877 3412 6.426937 CCCACCTAACGGTCATATCATTAAAG 59.573 42.308 0.00 0.00 43.24 1.85
1878 3413 6.126710 ACCCACCTAACGGTCATATCATTAAA 60.127 38.462 0.00 0.00 43.24 1.52
1879 3414 5.367352 ACCCACCTAACGGTCATATCATTAA 59.633 40.000 0.00 0.00 43.24 1.40
1880 3415 4.903049 ACCCACCTAACGGTCATATCATTA 59.097 41.667 0.00 0.00 43.24 1.90
1881 3416 3.714798 ACCCACCTAACGGTCATATCATT 59.285 43.478 0.00 0.00 43.24 2.57
1882 3417 3.314693 ACCCACCTAACGGTCATATCAT 58.685 45.455 0.00 0.00 43.24 2.45
1883 3418 2.754465 ACCCACCTAACGGTCATATCA 58.246 47.619 0.00 0.00 43.24 2.15
1884 3419 4.147321 TCTACCCACCTAACGGTCATATC 58.853 47.826 0.00 0.00 43.24 1.63
1885 3420 4.188937 TCTACCCACCTAACGGTCATAT 57.811 45.455 0.00 0.00 43.24 1.78
1886 3421 3.668141 TCTACCCACCTAACGGTCATA 57.332 47.619 0.00 0.00 43.24 2.15
1887 3422 2.537633 TCTACCCACCTAACGGTCAT 57.462 50.000 0.00 0.00 43.24 3.06
1888 3423 2.537633 ATCTACCCACCTAACGGTCA 57.462 50.000 0.00 0.00 43.24 4.02
1889 3424 5.541953 AAATATCTACCCACCTAACGGTC 57.458 43.478 0.00 0.00 43.24 4.79
1891 3426 5.061179 CCAAAATATCTACCCACCTAACGG 58.939 45.833 0.00 0.00 0.00 4.44
1892 3427 5.061179 CCCAAAATATCTACCCACCTAACG 58.939 45.833 0.00 0.00 0.00 3.18
1893 3428 6.060136 GTCCCAAAATATCTACCCACCTAAC 58.940 44.000 0.00 0.00 0.00 2.34
1894 3429 5.732170 TGTCCCAAAATATCTACCCACCTAA 59.268 40.000 0.00 0.00 0.00 2.69
1895 3430 5.290335 TGTCCCAAAATATCTACCCACCTA 58.710 41.667 0.00 0.00 0.00 3.08
1896 3431 4.116113 TGTCCCAAAATATCTACCCACCT 58.884 43.478 0.00 0.00 0.00 4.00
1897 3432 4.461198 CTGTCCCAAAATATCTACCCACC 58.539 47.826 0.00 0.00 0.00 4.61
1898 3433 3.883489 GCTGTCCCAAAATATCTACCCAC 59.117 47.826 0.00 0.00 0.00 4.61
1899 3434 3.785887 AGCTGTCCCAAAATATCTACCCA 59.214 43.478 0.00 0.00 0.00 4.51
1900 3435 4.137543 CAGCTGTCCCAAAATATCTACCC 58.862 47.826 5.25 0.00 0.00 3.69
1901 3436 4.137543 CCAGCTGTCCCAAAATATCTACC 58.862 47.826 13.81 0.00 0.00 3.18
1902 3437 3.565902 GCCAGCTGTCCCAAAATATCTAC 59.434 47.826 13.81 0.00 0.00 2.59
1903 3438 3.744214 CGCCAGCTGTCCCAAAATATCTA 60.744 47.826 13.81 0.00 0.00 1.98
1904 3439 2.659428 GCCAGCTGTCCCAAAATATCT 58.341 47.619 13.81 0.00 0.00 1.98
1905 3440 1.334869 CGCCAGCTGTCCCAAAATATC 59.665 52.381 13.81 0.00 0.00 1.63
1906 3441 1.392589 CGCCAGCTGTCCCAAAATAT 58.607 50.000 13.81 0.00 0.00 1.28
1907 3442 1.312371 GCGCCAGCTGTCCCAAAATA 61.312 55.000 13.81 0.00 41.01 1.40
1908 3443 2.639327 GCGCCAGCTGTCCCAAAAT 61.639 57.895 13.81 0.00 41.01 1.82
1909 3444 3.294493 GCGCCAGCTGTCCCAAAA 61.294 61.111 13.81 0.00 41.01 2.44
1921 3456 4.978863 TTGCTGTGCTACGCGCCA 62.979 61.111 5.73 0.00 38.39 5.69
1922 3457 4.445545 GTTGCTGTGCTACGCGCC 62.446 66.667 5.73 0.00 38.39 6.53
1927 3462 0.319555 TCTGACCGTTGCTGTGCTAC 60.320 55.000 0.00 0.00 0.00 3.58
1928 3463 0.391228 TTCTGACCGTTGCTGTGCTA 59.609 50.000 0.00 0.00 0.00 3.49
1929 3464 0.463654 TTTCTGACCGTTGCTGTGCT 60.464 50.000 0.00 0.00 0.00 4.40
1930 3465 0.593128 ATTTCTGACCGTTGCTGTGC 59.407 50.000 0.00 0.00 0.00 4.57
1931 3466 3.044986 CAAATTTCTGACCGTTGCTGTG 58.955 45.455 0.00 0.00 0.00 3.66
1932 3467 2.948979 TCAAATTTCTGACCGTTGCTGT 59.051 40.909 0.00 0.00 0.00 4.40
1933 3468 3.003689 AGTCAAATTTCTGACCGTTGCTG 59.996 43.478 6.65 0.00 45.77 4.41
1934 3469 3.214328 AGTCAAATTTCTGACCGTTGCT 58.786 40.909 6.65 0.00 45.77 3.91
1935 3470 3.626028 AGTCAAATTTCTGACCGTTGC 57.374 42.857 6.65 0.00 45.77 4.17
1936 3471 6.480524 TGATAGTCAAATTTCTGACCGTTG 57.519 37.500 6.65 0.00 45.77 4.10
1937 3472 7.504924 TTTGATAGTCAAATTTCTGACCGTT 57.495 32.000 6.65 0.00 45.77 4.44
1949 3484 5.015178 ACCCCTGAGGAATTTGATAGTCAAA 59.985 40.000 0.00 7.49 44.00 2.69
1950 3485 4.540099 ACCCCTGAGGAATTTGATAGTCAA 59.460 41.667 0.00 0.00 39.89 3.18
1951 3486 4.111577 ACCCCTGAGGAATTTGATAGTCA 58.888 43.478 0.00 0.00 39.89 3.41
1952 3487 4.779993 ACCCCTGAGGAATTTGATAGTC 57.220 45.455 0.00 0.00 39.89 2.59
1953 3488 5.911178 TGATACCCCTGAGGAATTTGATAGT 59.089 40.000 0.00 0.00 39.89 2.12
1954 3489 6.439636 TGATACCCCTGAGGAATTTGATAG 57.560 41.667 0.00 0.00 39.89 2.08
1955 3490 6.332635 ACATGATACCCCTGAGGAATTTGATA 59.667 38.462 0.00 0.00 39.89 2.15
1956 3491 5.135020 ACATGATACCCCTGAGGAATTTGAT 59.865 40.000 0.00 0.00 39.89 2.57
1957 3492 4.478317 ACATGATACCCCTGAGGAATTTGA 59.522 41.667 0.00 0.00 39.89 2.69
1958 3493 4.796606 ACATGATACCCCTGAGGAATTTG 58.203 43.478 0.00 0.00 39.89 2.32
1959 3494 5.449553 GAACATGATACCCCTGAGGAATTT 58.550 41.667 0.00 0.00 39.89 1.82
1960 3495 4.141158 GGAACATGATACCCCTGAGGAATT 60.141 45.833 0.00 0.00 39.89 2.17
1961 3496 3.395941 GGAACATGATACCCCTGAGGAAT 59.604 47.826 0.00 0.00 39.89 3.01
1962 3497 2.777692 GGAACATGATACCCCTGAGGAA 59.222 50.000 0.00 0.00 39.89 3.36
1963 3498 2.022035 AGGAACATGATACCCCTGAGGA 60.022 50.000 0.00 0.00 39.89 3.71
1964 3499 2.370189 GAGGAACATGATACCCCTGAGG 59.630 54.545 0.00 0.00 43.78 3.86
1965 3500 3.041211 TGAGGAACATGATACCCCTGAG 58.959 50.000 0.00 0.00 0.00 3.35
1966 3501 2.771943 GTGAGGAACATGATACCCCTGA 59.228 50.000 0.00 0.00 0.00 3.86
1967 3502 2.774234 AGTGAGGAACATGATACCCCTG 59.226 50.000 0.00 0.00 0.00 4.45
1968 3503 3.136641 AGTGAGGAACATGATACCCCT 57.863 47.619 0.00 0.00 0.00 4.79
1969 3504 3.456277 AGAAGTGAGGAACATGATACCCC 59.544 47.826 0.00 0.00 0.00 4.95
1970 3505 4.762289 AGAAGTGAGGAACATGATACCC 57.238 45.455 0.00 0.00 0.00 3.69
1971 3506 5.740513 GCCTAGAAGTGAGGAACATGATACC 60.741 48.000 0.00 0.00 35.99 2.73
1972 3507 5.163405 TGCCTAGAAGTGAGGAACATGATAC 60.163 44.000 0.00 0.00 35.99 2.24
1973 3508 4.962362 TGCCTAGAAGTGAGGAACATGATA 59.038 41.667 0.00 0.00 35.99 2.15
1974 3509 3.776969 TGCCTAGAAGTGAGGAACATGAT 59.223 43.478 0.00 0.00 35.99 2.45
1975 3510 3.173151 TGCCTAGAAGTGAGGAACATGA 58.827 45.455 0.00 0.00 35.99 3.07
1976 3511 3.616956 TGCCTAGAAGTGAGGAACATG 57.383 47.619 0.00 0.00 35.99 3.21
1977 3512 4.384647 GGATTGCCTAGAAGTGAGGAACAT 60.385 45.833 0.00 0.00 35.99 2.71
1978 3513 3.055094 GGATTGCCTAGAAGTGAGGAACA 60.055 47.826 0.00 0.00 35.99 3.18
1979 3514 3.536570 GGATTGCCTAGAAGTGAGGAAC 58.463 50.000 0.00 0.00 35.99 3.62
1980 3515 2.168521 CGGATTGCCTAGAAGTGAGGAA 59.831 50.000 0.00 0.00 35.99 3.36
1981 3516 1.757118 CGGATTGCCTAGAAGTGAGGA 59.243 52.381 0.00 0.00 35.99 3.71
1982 3517 1.808133 GCGGATTGCCTAGAAGTGAGG 60.808 57.143 0.00 0.00 37.76 3.86
1983 3518 1.134699 TGCGGATTGCCTAGAAGTGAG 60.135 52.381 0.00 0.00 45.60 3.51
1984 3519 0.901827 TGCGGATTGCCTAGAAGTGA 59.098 50.000 0.00 0.00 45.60 3.41
1985 3520 1.009829 GTGCGGATTGCCTAGAAGTG 58.990 55.000 0.00 0.00 45.60 3.16
1986 3521 0.905357 AGTGCGGATTGCCTAGAAGT 59.095 50.000 0.00 0.00 45.60 3.01
1987 3522 1.576356 GAGTGCGGATTGCCTAGAAG 58.424 55.000 0.00 0.00 45.60 2.85
1988 3523 0.179111 CGAGTGCGGATTGCCTAGAA 60.179 55.000 0.00 0.00 45.60 2.10
1989 3524 1.320344 ACGAGTGCGGATTGCCTAGA 61.320 55.000 0.00 0.00 45.60 2.43
1990 3525 1.141881 ACGAGTGCGGATTGCCTAG 59.858 57.895 0.00 0.00 45.60 3.02
1991 3526 1.153647 CACGAGTGCGGATTGCCTA 60.154 57.895 0.00 0.00 45.60 3.93
1992 3527 2.434884 CACGAGTGCGGATTGCCT 60.435 61.111 0.00 0.00 45.60 4.75
1993 3528 1.369091 ATTCACGAGTGCGGATTGCC 61.369 55.000 0.00 0.00 45.60 4.52
1994 3529 0.447801 AATTCACGAGTGCGGATTGC 59.552 50.000 0.00 0.00 46.70 3.56
1995 3530 2.416547 AGAAATTCACGAGTGCGGATTG 59.583 45.455 0.00 0.00 43.17 2.67
1996 3531 2.699954 AGAAATTCACGAGTGCGGATT 58.300 42.857 0.00 0.00 43.17 3.01
1997 3532 2.386661 AGAAATTCACGAGTGCGGAT 57.613 45.000 0.00 0.00 43.17 4.18
1998 3533 2.991190 GTTAGAAATTCACGAGTGCGGA 59.009 45.455 0.00 0.00 43.17 5.54
1999 3534 2.993899 AGTTAGAAATTCACGAGTGCGG 59.006 45.455 0.00 0.00 43.17 5.69
2000 3535 3.060895 GGAGTTAGAAATTCACGAGTGCG 59.939 47.826 0.00 0.00 44.79 5.34
2001 3536 4.246458 AGGAGTTAGAAATTCACGAGTGC 58.754 43.478 0.00 0.00 0.00 4.40
2002 3537 5.470368 TGAGGAGTTAGAAATTCACGAGTG 58.530 41.667 0.00 0.00 0.00 3.51
2003 3538 5.244178 ACTGAGGAGTTAGAAATTCACGAGT 59.756 40.000 0.00 0.00 0.00 4.18
2004 3539 5.715070 ACTGAGGAGTTAGAAATTCACGAG 58.285 41.667 0.00 0.00 0.00 4.18
2005 3540 5.723672 ACTGAGGAGTTAGAAATTCACGA 57.276 39.130 0.00 0.00 0.00 4.35
2016 3551 7.974504 AGGAATTTGTTCTAACTGAGGAGTTA 58.025 34.615 0.00 0.00 42.66 2.24
2017 3552 6.842676 AGGAATTTGTTCTAACTGAGGAGTT 58.157 36.000 0.00 0.00 44.90 3.01
2018 3553 6.043243 TGAGGAATTTGTTCTAACTGAGGAGT 59.957 38.462 0.00 0.00 0.00 3.85
2019 3554 6.467677 TGAGGAATTTGTTCTAACTGAGGAG 58.532 40.000 0.00 0.00 0.00 3.69
2020 3555 6.270000 TCTGAGGAATTTGTTCTAACTGAGGA 59.730 38.462 0.00 0.00 0.00 3.71
2021 3556 6.467677 TCTGAGGAATTTGTTCTAACTGAGG 58.532 40.000 0.00 0.00 0.00 3.86
2022 3557 7.330700 GTCTCTGAGGAATTTGTTCTAACTGAG 59.669 40.741 4.59 0.00 0.00 3.35
2023 3558 7.015682 AGTCTCTGAGGAATTTGTTCTAACTGA 59.984 37.037 4.59 0.00 0.00 3.41
2024 3559 7.158021 AGTCTCTGAGGAATTTGTTCTAACTG 58.842 38.462 4.59 0.00 0.00 3.16
2025 3560 7.309770 AGTCTCTGAGGAATTTGTTCTAACT 57.690 36.000 4.59 0.00 0.00 2.24
2026 3561 8.524487 TCTAGTCTCTGAGGAATTTGTTCTAAC 58.476 37.037 4.59 0.00 0.00 2.34
2027 3562 8.651589 TCTAGTCTCTGAGGAATTTGTTCTAA 57.348 34.615 4.59 0.00 0.00 2.10
2028 3563 8.651589 TTCTAGTCTCTGAGGAATTTGTTCTA 57.348 34.615 4.59 0.00 0.00 2.10
2029 3564 7.453126 TCTTCTAGTCTCTGAGGAATTTGTTCT 59.547 37.037 4.59 0.00 0.00 3.01
2030 3565 7.607250 TCTTCTAGTCTCTGAGGAATTTGTTC 58.393 38.462 4.59 0.00 0.00 3.18
2031 3566 7.546250 TCTTCTAGTCTCTGAGGAATTTGTT 57.454 36.000 4.59 0.00 0.00 2.83
2032 3567 6.350949 GCTCTTCTAGTCTCTGAGGAATTTGT 60.351 42.308 4.59 0.00 0.00 2.83
2033 3568 6.042143 GCTCTTCTAGTCTCTGAGGAATTTG 58.958 44.000 4.59 0.00 0.00 2.32
2034 3569 5.957774 AGCTCTTCTAGTCTCTGAGGAATTT 59.042 40.000 4.59 0.00 0.00 1.82
2035 3570 5.518865 AGCTCTTCTAGTCTCTGAGGAATT 58.481 41.667 4.59 0.00 0.00 2.17
2036 3571 5.129368 AGCTCTTCTAGTCTCTGAGGAAT 57.871 43.478 4.59 0.00 0.00 3.01
2037 3572 4.584638 AGCTCTTCTAGTCTCTGAGGAA 57.415 45.455 4.59 0.00 0.00 3.36
2038 3573 4.523083 GAAGCTCTTCTAGTCTCTGAGGA 58.477 47.826 4.59 0.00 36.69 3.71
2039 3574 3.312421 CGAAGCTCTTCTAGTCTCTGAGG 59.688 52.174 4.59 0.00 37.44 3.86
2040 3575 3.938963 ACGAAGCTCTTCTAGTCTCTGAG 59.061 47.826 7.88 0.00 37.44 3.35
2041 3576 3.936453 GACGAAGCTCTTCTAGTCTCTGA 59.064 47.826 7.88 0.00 37.44 3.27
2042 3577 3.938963 AGACGAAGCTCTTCTAGTCTCTG 59.061 47.826 11.73 0.00 36.33 3.35
2043 3578 4.189231 GAGACGAAGCTCTTCTAGTCTCT 58.811 47.826 24.47 11.78 44.47 3.10
2044 3579 4.034048 CAGAGACGAAGCTCTTCTAGTCTC 59.966 50.000 24.42 24.42 46.11 3.36
2045 3580 3.938963 CAGAGACGAAGCTCTTCTAGTCT 59.061 47.826 15.30 15.30 42.41 3.24
2046 3581 3.687698 ACAGAGACGAAGCTCTTCTAGTC 59.312 47.826 7.88 8.29 42.41 2.59
2047 3582 3.681593 ACAGAGACGAAGCTCTTCTAGT 58.318 45.455 7.88 0.00 42.41 2.57
2048 3583 3.687212 TGACAGAGACGAAGCTCTTCTAG 59.313 47.826 7.88 0.00 42.41 2.43
2049 3584 3.437395 GTGACAGAGACGAAGCTCTTCTA 59.563 47.826 7.88 0.00 42.41 2.10
2050 3585 2.227865 GTGACAGAGACGAAGCTCTTCT 59.772 50.000 7.88 0.00 42.41 2.85
2051 3586 2.227865 AGTGACAGAGACGAAGCTCTTC 59.772 50.000 0.00 0.00 42.41 2.87
2052 3587 2.235016 AGTGACAGAGACGAAGCTCTT 58.765 47.619 0.00 0.00 42.41 2.85
2053 3588 1.904287 AGTGACAGAGACGAAGCTCT 58.096 50.000 0.00 0.00 45.81 4.09
2054 3589 3.833545 TTAGTGACAGAGACGAAGCTC 57.166 47.619 0.00 0.00 35.11 4.09
2055 3590 4.792521 ATTTAGTGACAGAGACGAAGCT 57.207 40.909 0.00 0.00 0.00 3.74
2056 3591 6.946229 TTTATTTAGTGACAGAGACGAAGC 57.054 37.500 0.00 0.00 0.00 3.86
2057 3592 9.140286 TCAATTTATTTAGTGACAGAGACGAAG 57.860 33.333 0.00 0.00 0.00 3.79
2058 3593 8.922676 GTCAATTTATTTAGTGACAGAGACGAA 58.077 33.333 0.00 0.00 40.10 3.85
2059 3594 8.304596 AGTCAATTTATTTAGTGACAGAGACGA 58.695 33.333 6.92 0.00 42.29 4.20
2060 3595 8.376203 CAGTCAATTTATTTAGTGACAGAGACG 58.624 37.037 6.92 0.00 42.29 4.18
2061 3596 9.424319 TCAGTCAATTTATTTAGTGACAGAGAC 57.576 33.333 6.92 0.00 42.29 3.36
2062 3597 9.996554 TTCAGTCAATTTATTTAGTGACAGAGA 57.003 29.630 6.92 0.28 42.29 3.10
2064 3599 9.778741 AGTTCAGTCAATTTATTTAGTGACAGA 57.221 29.630 6.92 1.92 42.29 3.41
2077 3612 8.734386 GGAAATCTCATGTAGTTCAGTCAATTT 58.266 33.333 11.21 0.00 0.00 1.82
2078 3613 7.884877 TGGAAATCTCATGTAGTTCAGTCAATT 59.115 33.333 11.21 0.00 0.00 2.32
2079 3614 7.397221 TGGAAATCTCATGTAGTTCAGTCAAT 58.603 34.615 11.21 0.00 0.00 2.57
2080 3615 6.768483 TGGAAATCTCATGTAGTTCAGTCAA 58.232 36.000 11.21 0.00 0.00 3.18
2081 3616 6.358974 TGGAAATCTCATGTAGTTCAGTCA 57.641 37.500 11.21 1.29 0.00 3.41
2082 3617 7.201679 CCATTGGAAATCTCATGTAGTTCAGTC 60.202 40.741 0.00 0.00 0.00 3.51
2083 3618 6.600822 CCATTGGAAATCTCATGTAGTTCAGT 59.399 38.462 0.00 0.00 0.00 3.41
2084 3619 6.459298 GCCATTGGAAATCTCATGTAGTTCAG 60.459 42.308 6.95 0.00 0.00 3.02
2085 3620 5.357878 GCCATTGGAAATCTCATGTAGTTCA 59.642 40.000 6.95 0.00 0.00 3.18
2086 3621 5.591877 AGCCATTGGAAATCTCATGTAGTTC 59.408 40.000 6.95 0.00 0.00 3.01
2087 3622 5.513233 AGCCATTGGAAATCTCATGTAGTT 58.487 37.500 6.95 0.00 0.00 2.24
2088 3623 5.121380 AGCCATTGGAAATCTCATGTAGT 57.879 39.130 6.95 0.00 0.00 2.73
2089 3624 5.591472 TGAAGCCATTGGAAATCTCATGTAG 59.409 40.000 6.95 0.00 0.00 2.74
2090 3625 5.357878 GTGAAGCCATTGGAAATCTCATGTA 59.642 40.000 6.95 0.00 0.00 2.29
2091 3626 4.159135 GTGAAGCCATTGGAAATCTCATGT 59.841 41.667 6.95 0.00 0.00 3.21
2092 3627 4.401519 AGTGAAGCCATTGGAAATCTCATG 59.598 41.667 6.95 0.00 0.00 3.07
2093 3628 4.607239 AGTGAAGCCATTGGAAATCTCAT 58.393 39.130 6.95 0.00 0.00 2.90
2094 3629 4.012374 GAGTGAAGCCATTGGAAATCTCA 58.988 43.478 6.95 0.00 0.00 3.27
2095 3630 3.064545 CGAGTGAAGCCATTGGAAATCTC 59.935 47.826 6.95 6.15 0.00 2.75
2096 3631 3.012518 CGAGTGAAGCCATTGGAAATCT 58.987 45.455 6.95 0.00 0.00 2.40
2097 3632 3.009723 TCGAGTGAAGCCATTGGAAATC 58.990 45.455 6.95 1.46 0.00 2.17
2098 3633 3.071874 TCGAGTGAAGCCATTGGAAAT 57.928 42.857 6.95 0.00 0.00 2.17
2099 3634 2.559698 TCGAGTGAAGCCATTGGAAA 57.440 45.000 6.95 0.00 0.00 3.13
2100 3635 2.426522 CTTCGAGTGAAGCCATTGGAA 58.573 47.619 6.95 0.00 44.70 3.53
2101 3636 2.099141 CTTCGAGTGAAGCCATTGGA 57.901 50.000 6.95 0.00 44.70 3.53
2110 3645 2.500098 CCTACCAATCCCTTCGAGTGAA 59.500 50.000 0.00 0.00 38.92 3.18
2111 3646 2.108168 CCTACCAATCCCTTCGAGTGA 58.892 52.381 0.00 0.00 38.92 3.41
2112 3647 1.831736 ACCTACCAATCCCTTCGAGTG 59.168 52.381 0.00 0.00 36.31 3.51
2113 3648 1.831736 CACCTACCAATCCCTTCGAGT 59.168 52.381 0.00 0.00 0.00 4.18
2114 3649 1.831736 ACACCTACCAATCCCTTCGAG 59.168 52.381 0.00 0.00 0.00 4.04
2115 3650 1.946984 ACACCTACCAATCCCTTCGA 58.053 50.000 0.00 0.00 0.00 3.71
2116 3651 2.102588 CCTACACCTACCAATCCCTTCG 59.897 54.545 0.00 0.00 0.00 3.79
2117 3652 3.381335 TCCTACACCTACCAATCCCTTC 58.619 50.000 0.00 0.00 0.00 3.46
2118 3653 3.502051 TCCTACACCTACCAATCCCTT 57.498 47.619 0.00 0.00 0.00 3.95
2119 3654 3.726837 ATCCTACACCTACCAATCCCT 57.273 47.619 0.00 0.00 0.00 4.20
2120 3655 4.790718 AAATCCTACACCTACCAATCCC 57.209 45.455 0.00 0.00 0.00 3.85
2121 3656 5.751586 TCAAAATCCTACACCTACCAATCC 58.248 41.667 0.00 0.00 0.00 3.01
2122 3657 6.415573 ACTCAAAATCCTACACCTACCAATC 58.584 40.000 0.00 0.00 0.00 2.67
2123 3658 6.388619 ACTCAAAATCCTACACCTACCAAT 57.611 37.500 0.00 0.00 0.00 3.16
2124 3659 5.836024 ACTCAAAATCCTACACCTACCAA 57.164 39.130 0.00 0.00 0.00 3.67
2125 3660 5.308497 TCAACTCAAAATCCTACACCTACCA 59.692 40.000 0.00 0.00 0.00 3.25
2126 3661 5.801380 TCAACTCAAAATCCTACACCTACC 58.199 41.667 0.00 0.00 0.00 3.18
2127 3662 5.351740 GCTCAACTCAAAATCCTACACCTAC 59.648 44.000 0.00 0.00 0.00 3.18
2128 3663 5.012664 TGCTCAACTCAAAATCCTACACCTA 59.987 40.000 0.00 0.00 0.00 3.08
2129 3664 4.202461 TGCTCAACTCAAAATCCTACACCT 60.202 41.667 0.00 0.00 0.00 4.00
2130 3665 4.072131 TGCTCAACTCAAAATCCTACACC 58.928 43.478 0.00 0.00 0.00 4.16
2131 3666 5.412594 TGATGCTCAACTCAAAATCCTACAC 59.587 40.000 0.00 0.00 0.00 2.90
2132 3667 5.412594 GTGATGCTCAACTCAAAATCCTACA 59.587 40.000 0.00 0.00 0.00 2.74
2133 3668 5.645497 AGTGATGCTCAACTCAAAATCCTAC 59.355 40.000 0.00 0.00 0.00 3.18
2134 3669 5.809001 AGTGATGCTCAACTCAAAATCCTA 58.191 37.500 0.00 0.00 0.00 2.94
2135 3670 4.660168 AGTGATGCTCAACTCAAAATCCT 58.340 39.130 0.00 0.00 0.00 3.24
2136 3671 5.159209 CAAGTGATGCTCAACTCAAAATCC 58.841 41.667 0.00 0.00 0.00 3.01
2137 3672 5.048504 TCCAAGTGATGCTCAACTCAAAATC 60.049 40.000 0.00 0.00 0.00 2.17
2138 3673 4.828939 TCCAAGTGATGCTCAACTCAAAAT 59.171 37.500 0.00 0.00 0.00 1.82
2139 3674 4.206375 TCCAAGTGATGCTCAACTCAAAA 58.794 39.130 0.00 0.00 0.00 2.44
2140 3675 3.819368 TCCAAGTGATGCTCAACTCAAA 58.181 40.909 0.00 0.00 0.00 2.69
2141 3676 3.490439 TCCAAGTGATGCTCAACTCAA 57.510 42.857 0.00 0.00 0.00 3.02
2142 3677 3.490439 TTCCAAGTGATGCTCAACTCA 57.510 42.857 0.00 0.00 0.00 3.41
2143 3678 3.817647 AGTTTCCAAGTGATGCTCAACTC 59.182 43.478 0.00 0.00 0.00 3.01
2144 3679 3.825328 AGTTTCCAAGTGATGCTCAACT 58.175 40.909 0.00 0.00 0.00 3.16
2145 3680 4.574599 AAGTTTCCAAGTGATGCTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
2146 3681 5.591099 GAAAAGTTTCCAAGTGATGCTCAA 58.409 37.500 0.00 0.00 0.00 3.02
2147 3682 5.186996 GAAAAGTTTCCAAGTGATGCTCA 57.813 39.130 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.