Multiple sequence alignment - TraesCS5A01G285000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G285000 chr5A 100.000 5181 0 0 1 5181 493189956 493195136 0.000000e+00 9568
1 TraesCS5A01G285000 chr5A 85.789 380 41 9 114 481 287583165 287582787 1.750000e-104 390
2 TraesCS5A01G285000 chr5A 85.752 379 40 10 114 483 557123341 557122968 6.290000e-104 388
3 TraesCS5A01G285000 chr5D 95.830 4125 121 16 987 5106 390019381 390023459 0.000000e+00 6617
4 TraesCS5A01G285000 chr5D 92.308 494 22 11 505 988 390018857 390019344 0.000000e+00 688
5 TraesCS5A01G285000 chr5D 88.056 360 31 6 114 462 491536799 491537157 2.890000e-112 416
6 TraesCS5A01G285000 chr5B 94.344 3713 181 22 747 4444 470030264 470033962 0.000000e+00 5666
7 TraesCS5A01G285000 chr5B 87.682 755 52 21 4442 5175 470033998 470034732 0.000000e+00 841
8 TraesCS5A01G285000 chr5B 87.320 347 35 8 136 481 661127474 661127812 6.290000e-104 388
9 TraesCS5A01G285000 chr5B 86.420 162 13 4 482 641 470030117 470030271 8.920000e-38 169
10 TraesCS5A01G285000 chr7D 92.267 375 23 4 112 481 203039777 203039404 1.280000e-145 527
11 TraesCS5A01G285000 chr7D 86.243 378 34 16 114 480 47118629 47118259 1.350000e-105 394
12 TraesCS5A01G285000 chr4A 90.642 374 30 5 114 482 96314417 96314044 4.660000e-135 492
13 TraesCS5A01G285000 chr6D 85.829 374 45 7 114 482 2423115 2422745 1.750000e-104 390
14 TraesCS5A01G285000 chr4D 83.896 385 43 13 114 482 112722621 112723002 2.970000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G285000 chr5A 493189956 493195136 5180 False 9568.000000 9568 100.000 1 5181 1 chr5A.!!$F1 5180
1 TraesCS5A01G285000 chr5D 390018857 390023459 4602 False 3652.500000 6617 94.069 505 5106 2 chr5D.!!$F2 4601
2 TraesCS5A01G285000 chr5B 470030117 470034732 4615 False 2225.333333 5666 89.482 482 5175 3 chr5B.!!$F2 4693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.038744 CTCATCAAAGGCCCACCACT 59.961 55.0 0.00 0.0 39.06 4.00 F
267 268 0.255890 ACCTCACCATACATGCCACC 59.744 55.0 0.00 0.0 0.00 4.61 F
1152 1201 0.318762 ACGAGCACAACCTCCTCTTC 59.681 55.0 0.00 0.0 0.00 2.87 F
1884 1933 1.039856 ACAACCAGTTTCATGGCCAC 58.960 50.0 8.16 0.0 44.80 5.01 F
3507 3556 0.546122 TGGATGTGGGGTATGCACTC 59.454 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1322 1.004918 GGTGGGACGAGTTGAGGTG 60.005 63.158 0.0 0.0 0.00 4.00 R
1987 2036 1.537776 CGAGAGAGCCAGCGATTCAAT 60.538 52.381 0.0 0.0 0.00 2.57 R
2835 2884 1.671845 GTAAACGGCACTTCACCAACA 59.328 47.619 0.0 0.0 0.00 3.33 R
3709 3758 0.817654 GGGGAAGAAAGCAAATCGGG 59.182 55.000 0.0 0.0 0.00 5.14 R
4746 4836 0.321210 CGTATTCCTGTGTGGTGCCA 60.321 55.000 0.0 0.0 37.07 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.379732 GGATCACGATACCTCTAGGAAAG 57.620 47.826 2.23 0.00 38.94 2.62
23 24 4.828387 GGATCACGATACCTCTAGGAAAGT 59.172 45.833 2.23 0.00 38.94 2.66
24 25 5.278561 GGATCACGATACCTCTAGGAAAGTG 60.279 48.000 2.23 7.50 38.94 3.16
25 26 4.851843 TCACGATACCTCTAGGAAAGTGA 58.148 43.478 2.23 9.50 38.94 3.41
26 27 4.639310 TCACGATACCTCTAGGAAAGTGAC 59.361 45.833 2.23 0.00 38.94 3.67
27 28 3.952967 ACGATACCTCTAGGAAAGTGACC 59.047 47.826 2.23 0.00 38.94 4.02
28 29 3.003482 CGATACCTCTAGGAAAGTGACCG 59.997 52.174 2.23 0.00 38.94 4.79
29 30 2.599408 ACCTCTAGGAAAGTGACCGA 57.401 50.000 2.23 0.00 38.94 4.69
30 31 2.169330 ACCTCTAGGAAAGTGACCGAC 58.831 52.381 2.23 0.00 38.94 4.79
31 32 1.132643 CCTCTAGGAAAGTGACCGACG 59.867 57.143 0.00 0.00 37.39 5.12
32 33 2.082231 CTCTAGGAAAGTGACCGACGA 58.918 52.381 0.00 0.00 0.00 4.20
33 34 2.082231 TCTAGGAAAGTGACCGACGAG 58.918 52.381 0.00 0.00 0.00 4.18
34 35 2.082231 CTAGGAAAGTGACCGACGAGA 58.918 52.381 0.00 0.00 0.00 4.04
35 36 1.546961 AGGAAAGTGACCGACGAGAT 58.453 50.000 0.00 0.00 0.00 2.75
36 37 1.473278 AGGAAAGTGACCGACGAGATC 59.527 52.381 0.00 0.00 0.00 2.75
37 38 1.473278 GGAAAGTGACCGACGAGATCT 59.527 52.381 0.00 0.00 0.00 2.75
38 39 2.094649 GGAAAGTGACCGACGAGATCTT 60.095 50.000 0.00 0.00 0.00 2.40
39 40 2.923605 AAGTGACCGACGAGATCTTC 57.076 50.000 0.00 0.00 0.00 2.87
40 41 2.116827 AGTGACCGACGAGATCTTCT 57.883 50.000 0.00 0.00 0.00 2.85
41 42 2.438411 AGTGACCGACGAGATCTTCTT 58.562 47.619 0.00 0.00 0.00 2.52
42 43 2.162608 AGTGACCGACGAGATCTTCTTG 59.837 50.000 0.00 0.00 34.04 3.02
43 44 1.472878 TGACCGACGAGATCTTCTTGG 59.527 52.381 0.00 0.92 32.07 3.61
44 45 0.818296 ACCGACGAGATCTTCTTGGG 59.182 55.000 0.00 0.00 32.07 4.12
45 46 0.528684 CCGACGAGATCTTCTTGGGC 60.529 60.000 0.00 0.00 32.07 5.36
46 47 0.867753 CGACGAGATCTTCTTGGGCG 60.868 60.000 0.00 0.00 32.07 6.13
47 48 0.528684 GACGAGATCTTCTTGGGCGG 60.529 60.000 0.00 0.00 32.07 6.13
48 49 1.227380 CGAGATCTTCTTGGGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
49 50 1.908483 GAGATCTTCTTGGGCGGGT 59.092 57.895 0.00 0.00 0.00 5.28
50 51 1.120530 GAGATCTTCTTGGGCGGGTA 58.879 55.000 0.00 0.00 0.00 3.69
51 52 1.485066 GAGATCTTCTTGGGCGGGTAA 59.515 52.381 0.00 0.00 0.00 2.85
52 53 1.209747 AGATCTTCTTGGGCGGGTAAC 59.790 52.381 0.00 0.00 0.00 2.50
79 80 2.037847 GCCCTTGCCCCAGTGATT 59.962 61.111 0.00 0.00 0.00 2.57
80 81 2.353610 GCCCTTGCCCCAGTGATTG 61.354 63.158 0.00 0.00 0.00 2.67
90 91 1.616159 CCAGTGATTGGGAAAACGGT 58.384 50.000 0.00 0.00 43.75 4.83
91 92 1.269448 CCAGTGATTGGGAAAACGGTG 59.731 52.381 0.00 0.00 43.75 4.94
92 93 0.958822 AGTGATTGGGAAAACGGTGC 59.041 50.000 0.00 0.00 0.00 5.01
93 94 0.958822 GTGATTGGGAAAACGGTGCT 59.041 50.000 0.00 0.00 0.00 4.40
94 95 1.068541 GTGATTGGGAAAACGGTGCTC 60.069 52.381 0.00 0.00 0.00 4.26
95 96 0.526211 GATTGGGAAAACGGTGCTCC 59.474 55.000 0.00 0.00 0.00 4.70
96 97 0.112412 ATTGGGAAAACGGTGCTCCT 59.888 50.000 2.85 0.00 0.00 3.69
97 98 0.536460 TTGGGAAAACGGTGCTCCTC 60.536 55.000 2.85 0.00 0.00 3.71
98 99 2.033194 GGGAAAACGGTGCTCCTCG 61.033 63.158 2.85 0.00 0.00 4.63
99 100 2.677979 GGAAAACGGTGCTCCTCGC 61.678 63.158 2.85 0.00 39.77 5.03
107 108 3.188011 TGCTCCTCGCACTAGTCG 58.812 61.111 0.00 0.01 45.47 4.18
108 109 1.376812 TGCTCCTCGCACTAGTCGA 60.377 57.895 14.03 14.03 45.47 4.20
109 110 0.748367 TGCTCCTCGCACTAGTCGAT 60.748 55.000 14.79 0.00 45.47 3.59
110 111 0.317436 GCTCCTCGCACTAGTCGATG 60.317 60.000 14.79 12.83 38.92 3.84
111 112 0.309302 CTCCTCGCACTAGTCGATGG 59.691 60.000 14.79 16.11 35.25 3.51
112 113 0.107361 TCCTCGCACTAGTCGATGGA 60.107 55.000 19.31 19.31 35.25 3.41
113 114 0.738975 CCTCGCACTAGTCGATGGAA 59.261 55.000 14.79 0.00 35.25 3.53
114 115 1.338337 CCTCGCACTAGTCGATGGAAT 59.662 52.381 14.79 0.00 35.25 3.01
115 116 2.605823 CCTCGCACTAGTCGATGGAATC 60.606 54.545 14.79 0.00 40.89 2.52
116 117 2.292016 CTCGCACTAGTCGATGGAATCT 59.708 50.000 14.79 0.00 42.58 2.40
117 118 2.688446 TCGCACTAGTCGATGGAATCTT 59.312 45.455 11.68 0.00 42.58 2.40
118 119 3.881089 TCGCACTAGTCGATGGAATCTTA 59.119 43.478 11.68 0.00 42.58 2.10
119 120 4.519350 TCGCACTAGTCGATGGAATCTTAT 59.481 41.667 11.68 0.00 42.58 1.73
120 121 5.704053 TCGCACTAGTCGATGGAATCTTATA 59.296 40.000 11.68 0.00 42.58 0.98
121 122 6.374613 TCGCACTAGTCGATGGAATCTTATAT 59.625 38.462 11.68 0.00 42.58 0.86
122 123 7.551617 TCGCACTAGTCGATGGAATCTTATATA 59.448 37.037 11.68 0.00 42.58 0.86
123 124 7.640630 CGCACTAGTCGATGGAATCTTATATAC 59.359 40.741 8.47 0.00 42.58 1.47
124 125 8.459635 GCACTAGTCGATGGAATCTTATATACA 58.540 37.037 0.00 0.00 42.58 2.29
148 149 8.986991 ACATAAGAAGTTGATCCTCACTATTCT 58.013 33.333 0.00 0.00 29.31 2.40
167 168 9.836864 ACTATTCTATTTATCTCAACATGCACA 57.163 29.630 0.00 0.00 0.00 4.57
169 170 7.920160 TTCTATTTATCTCAACATGCACACA 57.080 32.000 0.00 0.00 0.00 3.72
170 171 8.510243 TTCTATTTATCTCAACATGCACACAT 57.490 30.769 0.00 0.00 36.79 3.21
180 181 4.007457 GCACACATGCCACCTCAT 57.993 55.556 0.00 0.00 46.97 2.90
181 182 1.805254 GCACACATGCCACCTCATC 59.195 57.895 0.00 0.00 46.97 2.92
182 183 0.961857 GCACACATGCCACCTCATCA 60.962 55.000 0.00 0.00 46.97 3.07
183 184 1.536940 CACACATGCCACCTCATCAA 58.463 50.000 0.00 0.00 0.00 2.57
184 185 1.887854 CACACATGCCACCTCATCAAA 59.112 47.619 0.00 0.00 0.00 2.69
185 186 2.094906 CACACATGCCACCTCATCAAAG 60.095 50.000 0.00 0.00 0.00 2.77
186 187 1.475280 CACATGCCACCTCATCAAAGG 59.525 52.381 0.00 0.00 42.55 3.11
187 188 0.458669 CATGCCACCTCATCAAAGGC 59.541 55.000 0.00 0.00 45.41 4.35
188 189 0.685458 ATGCCACCTCATCAAAGGCC 60.685 55.000 0.00 0.00 44.60 5.19
189 190 2.054453 GCCACCTCATCAAAGGCCC 61.054 63.158 0.00 0.00 40.34 5.80
190 191 1.383799 CCACCTCATCAAAGGCCCA 59.616 57.895 0.00 0.00 40.34 5.36
191 192 0.967380 CCACCTCATCAAAGGCCCAC 60.967 60.000 0.00 0.00 40.34 4.61
192 193 0.967380 CACCTCATCAAAGGCCCACC 60.967 60.000 0.00 0.00 40.34 4.61
193 194 1.383799 CCTCATCAAAGGCCCACCA 59.616 57.895 0.00 0.00 39.06 4.17
194 195 0.967380 CCTCATCAAAGGCCCACCAC 60.967 60.000 0.00 0.00 39.06 4.16
195 196 0.038744 CTCATCAAAGGCCCACCACT 59.961 55.000 0.00 0.00 39.06 4.00
196 197 1.281867 CTCATCAAAGGCCCACCACTA 59.718 52.381 0.00 0.00 39.06 2.74
197 198 1.004277 TCATCAAAGGCCCACCACTAC 59.996 52.381 0.00 0.00 39.06 2.73
198 199 1.072266 ATCAAAGGCCCACCACTACA 58.928 50.000 0.00 0.00 39.06 2.74
199 200 1.072266 TCAAAGGCCCACCACTACAT 58.928 50.000 0.00 0.00 39.06 2.29
200 201 1.176527 CAAAGGCCCACCACTACATG 58.823 55.000 0.00 0.00 39.06 3.21
201 202 1.072266 AAAGGCCCACCACTACATGA 58.928 50.000 0.00 0.00 39.06 3.07
202 203 1.072266 AAGGCCCACCACTACATGAA 58.928 50.000 0.00 0.00 39.06 2.57
203 204 1.298953 AGGCCCACCACTACATGAAT 58.701 50.000 0.00 0.00 39.06 2.57
204 205 1.064463 AGGCCCACCACTACATGAATG 60.064 52.381 0.00 0.00 39.06 2.67
205 206 1.064758 GGCCCACCACTACATGAATGA 60.065 52.381 0.00 0.00 35.26 2.57
206 207 2.292267 GCCCACCACTACATGAATGAG 58.708 52.381 0.00 0.00 0.00 2.90
207 208 2.092968 GCCCACCACTACATGAATGAGA 60.093 50.000 0.00 0.00 0.00 3.27
208 209 3.622206 GCCCACCACTACATGAATGAGAA 60.622 47.826 0.00 0.00 0.00 2.87
209 210 4.588899 CCCACCACTACATGAATGAGAAA 58.411 43.478 0.00 0.00 0.00 2.52
210 211 5.009631 CCCACCACTACATGAATGAGAAAA 58.990 41.667 0.00 0.00 0.00 2.29
211 212 5.476599 CCCACCACTACATGAATGAGAAAAA 59.523 40.000 0.00 0.00 0.00 1.94
212 213 6.349611 CCCACCACTACATGAATGAGAAAAAG 60.350 42.308 0.00 0.00 0.00 2.27
213 214 6.207417 CCACCACTACATGAATGAGAAAAAGT 59.793 38.462 0.00 0.00 0.00 2.66
214 215 7.255590 CCACCACTACATGAATGAGAAAAAGTT 60.256 37.037 0.00 0.00 0.00 2.66
215 216 8.137437 CACCACTACATGAATGAGAAAAAGTTT 58.863 33.333 0.00 0.00 0.00 2.66
216 217 8.695456 ACCACTACATGAATGAGAAAAAGTTTT 58.305 29.630 0.00 0.00 0.00 2.43
217 218 9.533253 CCACTACATGAATGAGAAAAAGTTTTT 57.467 29.630 13.35 13.35 0.00 1.94
240 241 7.912949 TTCATTATTAGTTGATTTCATGCGC 57.087 32.000 0.00 0.00 0.00 6.09
241 242 7.025485 TCATTATTAGTTGATTTCATGCGCA 57.975 32.000 14.96 14.96 0.00 6.09
242 243 6.912051 TCATTATTAGTTGATTTCATGCGCAC 59.088 34.615 14.90 0.00 0.00 5.34
243 244 3.485947 TTAGTTGATTTCATGCGCACC 57.514 42.857 14.90 0.00 0.00 5.01
244 245 1.538047 AGTTGATTTCATGCGCACCT 58.462 45.000 14.90 0.00 0.00 4.00
245 246 1.888512 AGTTGATTTCATGCGCACCTT 59.111 42.857 14.90 0.00 0.00 3.50
246 247 2.297033 AGTTGATTTCATGCGCACCTTT 59.703 40.909 14.90 0.00 0.00 3.11
247 248 2.634982 TGATTTCATGCGCACCTTTC 57.365 45.000 14.90 7.26 0.00 2.62
248 249 1.885233 TGATTTCATGCGCACCTTTCA 59.115 42.857 14.90 10.09 0.00 2.69
249 250 2.253603 GATTTCATGCGCACCTTTCAC 58.746 47.619 14.90 0.00 0.00 3.18
250 251 0.313672 TTTCATGCGCACCTTTCACC 59.686 50.000 14.90 0.00 0.00 4.02
251 252 0.537143 TTCATGCGCACCTTTCACCT 60.537 50.000 14.90 0.00 0.00 4.00
252 253 0.955428 TCATGCGCACCTTTCACCTC 60.955 55.000 14.90 0.00 0.00 3.85
253 254 1.073025 ATGCGCACCTTTCACCTCA 59.927 52.632 14.90 0.00 0.00 3.86
254 255 1.237285 ATGCGCACCTTTCACCTCAC 61.237 55.000 14.90 0.00 0.00 3.51
255 256 2.617274 GCGCACCTTTCACCTCACC 61.617 63.158 0.30 0.00 0.00 4.02
256 257 1.227823 CGCACCTTTCACCTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
257 258 0.606401 CGCACCTTTCACCTCACCAT 60.606 55.000 0.00 0.00 0.00 3.55
258 259 1.338674 CGCACCTTTCACCTCACCATA 60.339 52.381 0.00 0.00 0.00 2.74
259 260 2.084546 GCACCTTTCACCTCACCATAC 58.915 52.381 0.00 0.00 0.00 2.39
260 261 2.552155 GCACCTTTCACCTCACCATACA 60.552 50.000 0.00 0.00 0.00 2.29
261 262 3.873801 GCACCTTTCACCTCACCATACAT 60.874 47.826 0.00 0.00 0.00 2.29
262 263 3.691118 CACCTTTCACCTCACCATACATG 59.309 47.826 0.00 0.00 0.00 3.21
263 264 2.684881 CCTTTCACCTCACCATACATGC 59.315 50.000 0.00 0.00 0.00 4.06
264 265 2.418368 TTCACCTCACCATACATGCC 57.582 50.000 0.00 0.00 0.00 4.40
265 266 1.284313 TCACCTCACCATACATGCCA 58.716 50.000 0.00 0.00 0.00 4.92
266 267 1.065491 TCACCTCACCATACATGCCAC 60.065 52.381 0.00 0.00 0.00 5.01
267 268 0.255890 ACCTCACCATACATGCCACC 59.744 55.000 0.00 0.00 0.00 4.61
268 269 0.548031 CCTCACCATACATGCCACCT 59.452 55.000 0.00 0.00 0.00 4.00
269 270 1.064463 CCTCACCATACATGCCACCTT 60.064 52.381 0.00 0.00 0.00 3.50
270 271 2.172505 CCTCACCATACATGCCACCTTA 59.827 50.000 0.00 0.00 0.00 2.69
271 272 3.181440 CCTCACCATACATGCCACCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
272 273 4.067896 CTCACCATACATGCCACCTTATC 58.932 47.826 0.00 0.00 0.00 1.75
273 274 3.457749 TCACCATACATGCCACCTTATCA 59.542 43.478 0.00 0.00 0.00 2.15
274 275 4.080072 TCACCATACATGCCACCTTATCAA 60.080 41.667 0.00 0.00 0.00 2.57
275 276 4.644234 CACCATACATGCCACCTTATCAAA 59.356 41.667 0.00 0.00 0.00 2.69
276 277 4.889409 ACCATACATGCCACCTTATCAAAG 59.111 41.667 0.00 0.00 0.00 2.77
277 278 4.889409 CCATACATGCCACCTTATCAAAGT 59.111 41.667 0.00 0.00 0.00 2.66
278 279 5.360714 CCATACATGCCACCTTATCAAAGTT 59.639 40.000 0.00 0.00 0.00 2.66
279 280 6.460123 CCATACATGCCACCTTATCAAAGTTC 60.460 42.308 0.00 0.00 0.00 3.01
280 281 3.763897 ACATGCCACCTTATCAAAGTTCC 59.236 43.478 0.00 0.00 0.00 3.62
281 282 3.517296 TGCCACCTTATCAAAGTTCCA 57.483 42.857 0.00 0.00 0.00 3.53
282 283 3.153919 TGCCACCTTATCAAAGTTCCAC 58.846 45.455 0.00 0.00 0.00 4.02
283 284 3.181434 TGCCACCTTATCAAAGTTCCACT 60.181 43.478 0.00 0.00 0.00 4.00
284 285 3.440522 GCCACCTTATCAAAGTTCCACTC 59.559 47.826 0.00 0.00 0.00 3.51
285 286 4.651778 CCACCTTATCAAAGTTCCACTCA 58.348 43.478 0.00 0.00 0.00 3.41
286 287 5.070001 CCACCTTATCAAAGTTCCACTCAA 58.930 41.667 0.00 0.00 0.00 3.02
287 288 5.048713 CCACCTTATCAAAGTTCCACTCAAC 60.049 44.000 0.00 0.00 0.00 3.18
288 289 5.530915 CACCTTATCAAAGTTCCACTCAACA 59.469 40.000 0.00 0.00 0.00 3.33
289 290 6.207417 CACCTTATCAAAGTTCCACTCAACAT 59.793 38.462 0.00 0.00 0.00 2.71
290 291 6.207417 ACCTTATCAAAGTTCCACTCAACATG 59.793 38.462 0.00 0.00 0.00 3.21
291 292 3.988379 TCAAAGTTCCACTCAACATGC 57.012 42.857 0.00 0.00 0.00 4.06
292 293 3.286353 TCAAAGTTCCACTCAACATGCA 58.714 40.909 0.00 0.00 0.00 3.96
293 294 3.890756 TCAAAGTTCCACTCAACATGCAT 59.109 39.130 0.00 0.00 0.00 3.96
294 295 3.928727 AAGTTCCACTCAACATGCATG 57.071 42.857 25.09 25.09 0.00 4.06
295 296 3.144657 AGTTCCACTCAACATGCATGA 57.855 42.857 32.75 11.15 0.00 3.07
296 297 3.489355 AGTTCCACTCAACATGCATGAA 58.511 40.909 32.75 15.89 0.00 2.57
297 298 3.890756 AGTTCCACTCAACATGCATGAAA 59.109 39.130 32.75 15.55 0.00 2.69
298 299 4.341806 AGTTCCACTCAACATGCATGAAAA 59.658 37.500 32.75 15.21 0.00 2.29
299 300 4.933505 TCCACTCAACATGCATGAAAAA 57.066 36.364 32.75 13.51 0.00 1.94
320 321 5.813080 AAAAGTCCTCCATTACGTTATGC 57.187 39.130 9.01 0.00 0.00 3.14
321 322 4.755266 AAGTCCTCCATTACGTTATGCT 57.245 40.909 9.01 0.00 0.00 3.79
322 323 5.864418 AAGTCCTCCATTACGTTATGCTA 57.136 39.130 9.01 0.00 0.00 3.49
323 324 5.197682 AGTCCTCCATTACGTTATGCTAC 57.802 43.478 9.01 4.38 0.00 3.58
324 325 4.894114 AGTCCTCCATTACGTTATGCTACT 59.106 41.667 9.01 6.33 0.00 2.57
325 326 5.363005 AGTCCTCCATTACGTTATGCTACTT 59.637 40.000 9.01 0.00 0.00 2.24
326 327 6.548622 AGTCCTCCATTACGTTATGCTACTTA 59.451 38.462 9.01 0.00 0.00 2.24
327 328 7.232941 AGTCCTCCATTACGTTATGCTACTTAT 59.767 37.037 9.01 0.00 0.00 1.73
328 329 8.517878 GTCCTCCATTACGTTATGCTACTTATA 58.482 37.037 9.01 0.00 0.00 0.98
329 330 9.251440 TCCTCCATTACGTTATGCTACTTATAT 57.749 33.333 9.01 0.00 0.00 0.86
330 331 9.871238 CCTCCATTACGTTATGCTACTTATATT 57.129 33.333 9.01 0.00 0.00 1.28
421 422 9.638176 AATTCAATGATAGAAGCTTCTTACCAT 57.362 29.630 32.70 26.07 38.70 3.55
422 423 9.638176 ATTCAATGATAGAAGCTTCTTACCATT 57.362 29.630 32.70 29.13 38.70 3.16
431 432 8.273780 AGAAGCTTCTTACCATTAAATCACTG 57.726 34.615 23.49 0.00 32.55 3.66
432 433 8.103305 AGAAGCTTCTTACCATTAAATCACTGA 58.897 33.333 23.49 0.00 32.55 3.41
433 434 8.635765 AAGCTTCTTACCATTAAATCACTGAA 57.364 30.769 0.00 0.00 0.00 3.02
434 435 8.635765 AGCTTCTTACCATTAAATCACTGAAA 57.364 30.769 0.00 0.00 0.00 2.69
435 436 9.247861 AGCTTCTTACCATTAAATCACTGAAAT 57.752 29.630 0.00 0.00 0.00 2.17
452 453 8.506437 TCACTGAAATATATTGCAATCGATTCC 58.494 33.333 16.86 5.41 0.00 3.01
453 454 7.752239 CACTGAAATATATTGCAATCGATTCCC 59.248 37.037 16.86 11.73 0.00 3.97
454 455 7.448161 ACTGAAATATATTGCAATCGATTCCCA 59.552 33.333 16.86 14.88 0.00 4.37
455 456 7.592938 TGAAATATATTGCAATCGATTCCCAC 58.407 34.615 16.86 9.39 0.00 4.61
456 457 7.230309 TGAAATATATTGCAATCGATTCCCACA 59.770 33.333 16.86 11.36 0.00 4.17
457 458 7.523293 AATATATTGCAATCGATTCCCACAA 57.477 32.000 16.86 10.70 0.00 3.33
458 459 3.508744 ATTGCAATCGATTCCCACAAC 57.491 42.857 7.92 0.00 0.00 3.32
459 460 1.902938 TGCAATCGATTCCCACAACA 58.097 45.000 7.92 0.00 0.00 3.33
460 461 2.234143 TGCAATCGATTCCCACAACAA 58.766 42.857 7.92 0.00 0.00 2.83
461 462 2.030363 TGCAATCGATTCCCACAACAAC 60.030 45.455 7.92 0.00 0.00 3.32
462 463 2.850321 CAATCGATTCCCACAACAACG 58.150 47.619 7.92 0.00 0.00 4.10
463 464 0.802494 ATCGATTCCCACAACAACGC 59.198 50.000 0.00 0.00 0.00 4.84
464 465 0.533085 TCGATTCCCACAACAACGCA 60.533 50.000 0.00 0.00 0.00 5.24
465 466 0.385473 CGATTCCCACAACAACGCAC 60.385 55.000 0.00 0.00 0.00 5.34
466 467 0.385473 GATTCCCACAACAACGCACG 60.385 55.000 0.00 0.00 0.00 5.34
467 468 1.791103 ATTCCCACAACAACGCACGG 61.791 55.000 0.00 0.00 0.00 4.94
468 469 3.959975 CCCACAACAACGCACGGG 61.960 66.667 0.00 0.00 0.00 5.28
469 470 3.206246 CCACAACAACGCACGGGT 61.206 61.111 0.00 0.00 0.00 5.28
470 471 1.888172 CCACAACAACGCACGGGTA 60.888 57.895 0.00 0.00 0.00 3.69
471 472 1.231958 CCACAACAACGCACGGGTAT 61.232 55.000 0.00 0.00 0.00 2.73
472 473 0.589223 CACAACAACGCACGGGTATT 59.411 50.000 0.00 0.00 0.00 1.89
473 474 1.799403 CACAACAACGCACGGGTATTA 59.201 47.619 0.00 0.00 0.00 0.98
474 475 2.417239 CACAACAACGCACGGGTATTAT 59.583 45.455 0.00 0.00 0.00 1.28
475 476 2.674357 ACAACAACGCACGGGTATTATC 59.326 45.455 0.00 0.00 0.00 1.75
476 477 2.933906 CAACAACGCACGGGTATTATCT 59.066 45.455 0.00 0.00 0.00 1.98
477 478 4.114073 CAACAACGCACGGGTATTATCTA 58.886 43.478 0.00 0.00 0.00 1.98
478 479 3.973657 ACAACGCACGGGTATTATCTAG 58.026 45.455 0.00 0.00 0.00 2.43
479 480 3.382546 ACAACGCACGGGTATTATCTAGT 59.617 43.478 0.00 0.00 0.00 2.57
480 481 4.142093 ACAACGCACGGGTATTATCTAGTT 60.142 41.667 0.00 0.00 0.00 2.24
485 486 4.748600 GCACGGGTATTATCTAGTTTCACC 59.251 45.833 0.00 0.00 0.00 4.02
505 506 2.124277 GTTAGGGAAACGCCATTCCT 57.876 50.000 13.27 2.15 46.66 3.36
506 507 3.271055 GTTAGGGAAACGCCATTCCTA 57.729 47.619 13.27 1.26 46.66 2.94
507 508 3.816994 GTTAGGGAAACGCCATTCCTAT 58.183 45.455 13.27 6.82 46.66 2.57
508 509 4.204799 GTTAGGGAAACGCCATTCCTATT 58.795 43.478 13.27 4.65 46.66 1.73
509 510 3.382083 AGGGAAACGCCATTCCTATTT 57.618 42.857 13.27 0.00 46.66 1.40
537 538 1.546961 AGGATTGACCGAAGACTCGT 58.453 50.000 0.00 0.00 43.87 4.18
551 552 3.302347 CTCGTGGTCCTGCTGTCCC 62.302 68.421 0.00 0.00 0.00 4.46
552 553 3.625897 CGTGGTCCTGCTGTCCCA 61.626 66.667 0.00 0.00 0.00 4.37
553 554 2.032681 GTGGTCCTGCTGTCCCAC 59.967 66.667 11.42 11.42 40.47 4.61
554 555 3.249189 TGGTCCTGCTGTCCCACC 61.249 66.667 0.00 0.00 0.00 4.61
555 556 3.249189 GGTCCTGCTGTCCCACCA 61.249 66.667 0.00 0.00 0.00 4.17
556 557 2.348998 GTCCTGCTGTCCCACCAG 59.651 66.667 0.00 0.00 35.49 4.00
557 558 2.930019 TCCTGCTGTCCCACCAGG 60.930 66.667 0.00 0.00 45.88 4.45
558 559 4.729918 CCTGCTGTCCCACCAGGC 62.730 72.222 0.00 0.00 39.64 4.85
559 560 4.729918 CTGCTGTCCCACCAGGCC 62.730 72.222 0.00 0.00 34.51 5.19
564 566 4.660938 GTCCCACCAGGCCACCAC 62.661 72.222 5.01 0.00 34.51 4.16
605 607 2.943690 GAGTGGTAGCTAGTCATCGACA 59.056 50.000 0.00 0.00 34.60 4.35
668 670 1.961277 GTGTCCTGCCTGTTGTCCG 60.961 63.158 0.00 0.00 0.00 4.79
876 881 2.125106 GACCATGACGTCCAGGCC 60.125 66.667 19.77 8.34 0.00 5.19
928 933 6.887545 AGGGCTATAGATGTGTGTATCTCTAC 59.112 42.308 3.21 0.00 38.35 2.59
977 987 2.628178 ACACCATCACTTCTCGTCTTCA 59.372 45.455 0.00 0.00 0.00 3.02
988 998 2.030717 TCTCGTCTTCACAGCAGAACTC 60.031 50.000 0.00 0.00 0.00 3.01
1021 1070 1.734477 CAAGCTCCGTCGTGTCCTG 60.734 63.158 0.00 0.00 0.00 3.86
1083 1132 3.927548 TGGCTCTGCTCGTGTGCA 61.928 61.111 0.00 0.00 41.05 4.57
1152 1201 0.318762 ACGAGCACAACCTCCTCTTC 59.681 55.000 0.00 0.00 0.00 2.87
1182 1231 2.897350 CTTTCGGATCCGGCAGGC 60.897 66.667 32.79 0.00 40.25 4.85
1296 1345 2.526873 AACTCGTCCCACCTGGCT 60.527 61.111 0.00 0.00 0.00 4.75
1475 1524 4.507969 AGCTTTGGGAAGGTGCAG 57.492 55.556 0.00 0.00 41.77 4.41
1495 1544 1.083806 TAAGCTGCGCGTCCTCAATG 61.084 55.000 8.43 0.00 0.00 2.82
1788 1837 4.147219 CTTGAAAGGATTGTCCGTTGTC 57.853 45.455 1.92 0.00 42.75 3.18
1884 1933 1.039856 ACAACCAGTTTCATGGCCAC 58.960 50.000 8.16 0.00 44.80 5.01
1941 1990 2.930682 GAGAATTGAGCTCGGGTACAAC 59.069 50.000 9.64 0.00 0.00 3.32
1987 2036 1.635487 AGGTTGGAGGCTTGCAGAATA 59.365 47.619 0.00 0.00 0.00 1.75
2133 2182 1.340248 GGGATGCTTCCTTCGTCGATA 59.660 52.381 17.48 0.00 42.20 2.92
2196 2245 5.245301 TCATAACCGGATACTAGGGAACATG 59.755 44.000 9.46 0.00 0.00 3.21
2382 2431 7.941795 TCTTACTCAGTTAAGCAACTTGTAC 57.058 36.000 0.00 0.00 42.51 2.90
2451 2500 6.205658 GGAACTTGGCATCCTTACTGAATATC 59.794 42.308 0.00 0.00 32.75 1.63
2457 2506 6.427853 TGGCATCCTTACTGAATATCGATTTG 59.572 38.462 1.71 0.00 0.00 2.32
2718 2767 2.180276 AGTATTCCGCCACTCTTGAGT 58.820 47.619 0.00 0.00 0.00 3.41
2753 2802 7.311109 GGGTTTAGAAATCCTAGACCTCTCAAA 60.311 40.741 10.37 0.00 46.48 2.69
2760 2809 5.215252 TCCTAGACCTCTCAAACAACAAG 57.785 43.478 0.00 0.00 0.00 3.16
2887 2936 5.534407 TCACGAATGCTACTACAGTTTCAA 58.466 37.500 0.00 0.00 0.00 2.69
2976 3025 7.830099 ATCATCAAAGAAGAACAAACTTCCT 57.170 32.000 0.00 0.00 44.90 3.36
2983 3032 8.650714 CAAAGAAGAACAAACTTCCTTTGAAAG 58.349 33.333 17.48 0.00 44.90 2.62
3498 3547 2.037772 GAGCATACTACTGGATGTGGGG 59.962 54.545 0.00 0.00 0.00 4.96
3507 3556 0.546122 TGGATGTGGGGTATGCACTC 59.454 55.000 0.00 0.00 0.00 3.51
3694 3743 6.373759 GGATTTAGAGGGACAATTGGGTATT 58.626 40.000 10.83 0.00 0.00 1.89
3709 3758 1.745653 GGTATTCTGCTCCAGGTTTGC 59.254 52.381 0.00 0.00 31.51 3.68
3716 3765 1.250840 GCTCCAGGTTTGCCCGATTT 61.251 55.000 0.00 0.00 38.74 2.17
3717 3766 0.527565 CTCCAGGTTTGCCCGATTTG 59.472 55.000 0.00 0.00 38.74 2.32
3880 3929 2.634639 TAGTAACTGGGAAGAGGCCA 57.365 50.000 5.01 0.00 0.00 5.36
3883 3932 1.351350 GTAACTGGGAAGAGGCCAACT 59.649 52.381 5.01 0.00 0.00 3.16
3901 3950 5.504665 GCCAACTGATAGCATGTTCATACAC 60.505 44.000 0.00 0.00 37.03 2.90
4087 4137 3.259625 GCCTGACCTCACTTCTTAGACTT 59.740 47.826 0.00 0.00 0.00 3.01
4102 4152 6.191315 TCTTAGACTTGGAGTATCTTGCTCT 58.809 40.000 0.00 0.00 33.73 4.09
4192 4242 2.795117 CTCGCGTAGAGGAAGGTTAAC 58.205 52.381 5.77 0.00 43.20 2.01
4280 4332 9.261180 GCACTATTCTTCAATTAGTAGCATGTA 57.739 33.333 0.00 0.00 0.00 2.29
4563 4653 6.714356 CCAAACAATTGTTGAACCCCAATAAT 59.286 34.615 23.93 1.14 44.87 1.28
4690 4780 2.105821 TCTAACACAAACAGTCAGGGGG 59.894 50.000 0.00 0.00 0.00 5.40
4712 4802 4.517285 GTGAGCTAGGATTTGGACATGAA 58.483 43.478 0.00 0.00 0.00 2.57
4719 4809 2.170166 GATTTGGACATGAAGGGTGCA 58.830 47.619 0.00 0.00 34.66 4.57
4720 4810 2.079170 TTTGGACATGAAGGGTGCAA 57.921 45.000 0.00 0.00 43.43 4.08
4721 4811 1.619654 TTGGACATGAAGGGTGCAAG 58.380 50.000 0.00 0.00 40.87 4.01
4722 4812 0.251297 TGGACATGAAGGGTGCAAGG 60.251 55.000 0.00 0.00 33.49 3.61
4734 4824 4.488770 AGGGTGCAAGGAAGGAAAATAAA 58.511 39.130 0.00 0.00 0.00 1.40
4758 4848 0.314935 GTTCCAATGGCACCACACAG 59.685 55.000 0.00 0.00 0.00 3.66
4862 4970 1.689959 GCAATGAGCTTGAAACACGG 58.310 50.000 0.00 0.00 41.15 4.94
4868 4976 2.067013 GAGCTTGAAACACGGGTCTAC 58.933 52.381 0.00 0.00 0.00 2.59
5040 5151 5.643777 CGTACCTTGATTCCTTGAAGTTGAT 59.356 40.000 0.00 0.00 0.00 2.57
5041 5152 6.183360 CGTACCTTGATTCCTTGAAGTTGATC 60.183 42.308 0.00 0.00 0.00 2.92
5042 5153 5.885465 ACCTTGATTCCTTGAAGTTGATCT 58.115 37.500 0.00 0.00 0.00 2.75
5094 5205 1.142748 GCCGTGGTCTCTCTCATGG 59.857 63.158 0.00 0.00 41.64 3.66
5095 5206 1.608717 GCCGTGGTCTCTCTCATGGT 61.609 60.000 0.00 0.00 41.00 3.55
5164 5275 2.048222 CGGCGGAGTCAGCAAGAA 60.048 61.111 17.21 0.00 36.08 2.52
5175 5286 0.514691 CAGCAAGAACCGAGAAGCAC 59.485 55.000 0.00 0.00 0.00 4.40
5176 5287 0.106708 AGCAAGAACCGAGAAGCACA 59.893 50.000 0.00 0.00 0.00 4.57
5177 5288 1.160137 GCAAGAACCGAGAAGCACAT 58.840 50.000 0.00 0.00 0.00 3.21
5178 5289 2.028112 AGCAAGAACCGAGAAGCACATA 60.028 45.455 0.00 0.00 0.00 2.29
5179 5290 2.094417 GCAAGAACCGAGAAGCACATAC 59.906 50.000 0.00 0.00 0.00 2.39
5180 5291 2.673368 CAAGAACCGAGAAGCACATACC 59.327 50.000 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.828387 ACTTTCCTAGAGGTATCGTGATCC 59.172 45.833 0.00 0.00 36.34 3.36
1 2 5.531659 TCACTTTCCTAGAGGTATCGTGATC 59.468 44.000 0.00 0.00 36.34 2.92
2 3 5.299782 GTCACTTTCCTAGAGGTATCGTGAT 59.700 44.000 12.34 0.00 34.58 3.06
3 4 4.639310 GTCACTTTCCTAGAGGTATCGTGA 59.361 45.833 0.00 2.81 36.34 4.35
4 5 4.202030 GGTCACTTTCCTAGAGGTATCGTG 60.202 50.000 0.00 0.64 36.34 4.35
5 6 3.952967 GGTCACTTTCCTAGAGGTATCGT 59.047 47.826 0.00 0.00 36.34 3.73
6 7 3.003482 CGGTCACTTTCCTAGAGGTATCG 59.997 52.174 0.00 0.00 36.34 2.92
7 8 4.036616 GTCGGTCACTTTCCTAGAGGTATC 59.963 50.000 0.00 0.00 36.34 2.24
8 9 3.952967 GTCGGTCACTTTCCTAGAGGTAT 59.047 47.826 0.00 0.00 36.34 2.73
9 10 3.350833 GTCGGTCACTTTCCTAGAGGTA 58.649 50.000 0.00 0.00 36.34 3.08
10 11 2.169330 GTCGGTCACTTTCCTAGAGGT 58.831 52.381 0.00 0.00 36.34 3.85
11 12 1.132643 CGTCGGTCACTTTCCTAGAGG 59.867 57.143 0.00 0.00 0.00 3.69
12 13 2.082231 TCGTCGGTCACTTTCCTAGAG 58.918 52.381 0.00 0.00 0.00 2.43
13 14 2.082231 CTCGTCGGTCACTTTCCTAGA 58.918 52.381 0.00 0.00 0.00 2.43
14 15 2.082231 TCTCGTCGGTCACTTTCCTAG 58.918 52.381 0.00 0.00 0.00 3.02
15 16 2.189594 TCTCGTCGGTCACTTTCCTA 57.810 50.000 0.00 0.00 0.00 2.94
16 17 1.473278 GATCTCGTCGGTCACTTTCCT 59.527 52.381 0.00 0.00 0.00 3.36
17 18 1.473278 AGATCTCGTCGGTCACTTTCC 59.527 52.381 0.00 0.00 0.00 3.13
18 19 2.923605 AGATCTCGTCGGTCACTTTC 57.076 50.000 0.00 0.00 0.00 2.62
19 20 2.820787 AGAAGATCTCGTCGGTCACTTT 59.179 45.455 0.00 0.00 0.00 2.66
20 21 2.438411 AGAAGATCTCGTCGGTCACTT 58.562 47.619 0.00 0.00 0.00 3.16
21 22 2.116827 AGAAGATCTCGTCGGTCACT 57.883 50.000 0.00 0.00 0.00 3.41
22 23 2.520979 CAAGAAGATCTCGTCGGTCAC 58.479 52.381 0.00 0.00 0.00 3.67
23 24 1.472878 CCAAGAAGATCTCGTCGGTCA 59.527 52.381 0.00 0.00 0.00 4.02
24 25 1.202313 CCCAAGAAGATCTCGTCGGTC 60.202 57.143 0.00 0.00 0.00 4.79
25 26 0.818296 CCCAAGAAGATCTCGTCGGT 59.182 55.000 0.00 0.00 0.00 4.69
26 27 0.528684 GCCCAAGAAGATCTCGTCGG 60.529 60.000 0.00 0.00 0.00 4.79
27 28 0.867753 CGCCCAAGAAGATCTCGTCG 60.868 60.000 0.00 0.00 0.00 5.12
28 29 0.528684 CCGCCCAAGAAGATCTCGTC 60.529 60.000 0.00 0.00 0.00 4.20
29 30 1.517832 CCGCCCAAGAAGATCTCGT 59.482 57.895 0.00 0.00 0.00 4.18
30 31 1.227380 CCCGCCCAAGAAGATCTCG 60.227 63.158 0.00 0.00 0.00 4.04
31 32 1.120530 TACCCGCCCAAGAAGATCTC 58.879 55.000 0.00 0.00 0.00 2.75
32 33 1.209747 GTTACCCGCCCAAGAAGATCT 59.790 52.381 0.00 0.00 0.00 2.75
33 34 1.664873 GTTACCCGCCCAAGAAGATC 58.335 55.000 0.00 0.00 0.00 2.75
34 35 0.255033 GGTTACCCGCCCAAGAAGAT 59.745 55.000 0.00 0.00 0.00 2.40
35 36 1.681076 GGTTACCCGCCCAAGAAGA 59.319 57.895 0.00 0.00 0.00 2.87
36 37 4.313819 GGTTACCCGCCCAAGAAG 57.686 61.111 0.00 0.00 0.00 2.85
62 63 2.037847 AATCACTGGGGCAAGGGC 59.962 61.111 0.00 0.00 40.13 5.19
63 64 1.683365 CCAATCACTGGGGCAAGGG 60.683 63.158 0.00 0.00 42.17 3.95
64 65 4.023137 CCAATCACTGGGGCAAGG 57.977 61.111 0.00 0.00 42.17 3.61
71 72 1.269448 CACCGTTTTCCCAATCACTGG 59.731 52.381 0.00 0.00 45.97 4.00
72 73 1.335872 GCACCGTTTTCCCAATCACTG 60.336 52.381 0.00 0.00 0.00 3.66
73 74 0.958822 GCACCGTTTTCCCAATCACT 59.041 50.000 0.00 0.00 0.00 3.41
74 75 0.958822 AGCACCGTTTTCCCAATCAC 59.041 50.000 0.00 0.00 0.00 3.06
75 76 1.243902 GAGCACCGTTTTCCCAATCA 58.756 50.000 0.00 0.00 0.00 2.57
76 77 0.526211 GGAGCACCGTTTTCCCAATC 59.474 55.000 0.00 0.00 0.00 2.67
77 78 0.112412 AGGAGCACCGTTTTCCCAAT 59.888 50.000 0.00 0.00 41.83 3.16
78 79 0.536460 GAGGAGCACCGTTTTCCCAA 60.536 55.000 0.00 0.00 41.83 4.12
79 80 1.072505 GAGGAGCACCGTTTTCCCA 59.927 57.895 0.00 0.00 41.83 4.37
80 81 2.033194 CGAGGAGCACCGTTTTCCC 61.033 63.158 0.00 0.00 41.83 3.97
81 82 3.562635 CGAGGAGCACCGTTTTCC 58.437 61.111 0.00 0.00 41.83 3.13
91 92 0.317436 CATCGACTAGTGCGAGGAGC 60.317 60.000 18.21 0.00 41.51 4.70
92 93 0.309302 CCATCGACTAGTGCGAGGAG 59.691 60.000 22.15 14.26 41.51 3.69
93 94 0.107361 TCCATCGACTAGTGCGAGGA 60.107 55.000 22.15 20.56 41.51 3.71
94 95 0.738975 TTCCATCGACTAGTGCGAGG 59.261 55.000 17.92 17.41 41.49 4.63
95 96 2.292016 AGATTCCATCGACTAGTGCGAG 59.708 50.000 17.92 11.96 41.49 5.03
96 97 2.298610 AGATTCCATCGACTAGTGCGA 58.701 47.619 16.17 16.17 42.48 5.10
97 98 2.783828 AGATTCCATCGACTAGTGCG 57.216 50.000 0.00 4.15 0.00 5.34
98 99 8.459635 TGTATATAAGATTCCATCGACTAGTGC 58.540 37.037 0.00 0.00 0.00 4.40
141 142 9.836864 TGTGCATGTTGAGATAAATAGAATAGT 57.163 29.630 0.00 0.00 0.00 2.12
143 144 9.612066 TGTGTGCATGTTGAGATAAATAGAATA 57.388 29.630 0.00 0.00 0.00 1.75
144 145 8.510243 TGTGTGCATGTTGAGATAAATAGAAT 57.490 30.769 0.00 0.00 0.00 2.40
145 146 7.920160 TGTGTGCATGTTGAGATAAATAGAA 57.080 32.000 0.00 0.00 0.00 2.10
146 147 7.922837 CATGTGTGCATGTTGAGATAAATAGA 58.077 34.615 0.00 0.00 45.48 1.98
164 165 1.536940 TTGATGAGGTGGCATGTGTG 58.463 50.000 0.00 0.00 0.00 3.82
165 166 2.165167 CTTTGATGAGGTGGCATGTGT 58.835 47.619 0.00 0.00 0.00 3.72
166 167 1.475280 CCTTTGATGAGGTGGCATGTG 59.525 52.381 0.00 0.00 31.89 3.21
167 168 1.843368 CCTTTGATGAGGTGGCATGT 58.157 50.000 0.00 0.00 31.89 3.21
168 169 0.458669 GCCTTTGATGAGGTGGCATG 59.541 55.000 0.00 0.00 42.79 4.06
169 170 0.685458 GGCCTTTGATGAGGTGGCAT 60.685 55.000 0.00 0.00 44.85 4.40
170 171 1.304381 GGCCTTTGATGAGGTGGCA 60.304 57.895 0.00 0.00 44.85 4.92
171 172 2.054453 GGGCCTTTGATGAGGTGGC 61.054 63.158 0.84 0.00 42.56 5.01
172 173 0.967380 GTGGGCCTTTGATGAGGTGG 60.967 60.000 4.53 0.00 39.11 4.61
173 174 0.967380 GGTGGGCCTTTGATGAGGTG 60.967 60.000 4.53 0.00 39.11 4.00
174 175 1.384191 GGTGGGCCTTTGATGAGGT 59.616 57.895 4.53 0.00 39.11 3.85
175 176 0.967380 GTGGTGGGCCTTTGATGAGG 60.967 60.000 4.53 0.00 39.93 3.86
176 177 0.038744 AGTGGTGGGCCTTTGATGAG 59.961 55.000 4.53 0.00 35.27 2.90
177 178 1.004277 GTAGTGGTGGGCCTTTGATGA 59.996 52.381 4.53 0.00 35.27 2.92
178 179 1.271871 TGTAGTGGTGGGCCTTTGATG 60.272 52.381 4.53 0.00 35.27 3.07
179 180 1.072266 TGTAGTGGTGGGCCTTTGAT 58.928 50.000 4.53 0.00 35.27 2.57
180 181 1.072266 ATGTAGTGGTGGGCCTTTGA 58.928 50.000 4.53 0.00 35.27 2.69
181 182 1.176527 CATGTAGTGGTGGGCCTTTG 58.823 55.000 4.53 0.00 35.27 2.77
182 183 1.072266 TCATGTAGTGGTGGGCCTTT 58.928 50.000 4.53 0.00 35.27 3.11
183 184 1.072266 TTCATGTAGTGGTGGGCCTT 58.928 50.000 4.53 0.00 35.27 4.35
184 185 1.064463 CATTCATGTAGTGGTGGGCCT 60.064 52.381 4.53 0.00 35.27 5.19
185 186 1.064758 TCATTCATGTAGTGGTGGGCC 60.065 52.381 0.00 0.00 0.00 5.80
186 187 2.092968 TCTCATTCATGTAGTGGTGGGC 60.093 50.000 0.00 0.00 0.00 5.36
187 188 3.912496 TCTCATTCATGTAGTGGTGGG 57.088 47.619 0.00 0.00 0.00 4.61
188 189 6.207417 ACTTTTTCTCATTCATGTAGTGGTGG 59.793 38.462 0.00 0.00 0.00 4.61
189 190 7.206981 ACTTTTTCTCATTCATGTAGTGGTG 57.793 36.000 0.00 0.00 0.00 4.17
190 191 7.823745 AACTTTTTCTCATTCATGTAGTGGT 57.176 32.000 0.00 0.00 0.00 4.16
191 192 9.533253 AAAAACTTTTTCTCATTCATGTAGTGG 57.467 29.630 0.00 0.00 0.00 4.00
214 215 8.806634 GCGCATGAAATCAACTAATAATGAAAA 58.193 29.630 0.30 0.00 0.00 2.29
215 216 7.972832 TGCGCATGAAATCAACTAATAATGAAA 59.027 29.630 5.66 0.00 0.00 2.69
216 217 7.431960 GTGCGCATGAAATCAACTAATAATGAA 59.568 33.333 15.91 0.00 0.00 2.57
217 218 6.912051 GTGCGCATGAAATCAACTAATAATGA 59.088 34.615 15.91 0.00 0.00 2.57
218 219 6.142798 GGTGCGCATGAAATCAACTAATAATG 59.857 38.462 15.91 0.00 0.00 1.90
219 220 6.039717 AGGTGCGCATGAAATCAACTAATAAT 59.960 34.615 15.91 0.00 0.00 1.28
220 221 5.356751 AGGTGCGCATGAAATCAACTAATAA 59.643 36.000 15.91 0.00 0.00 1.40
221 222 4.881273 AGGTGCGCATGAAATCAACTAATA 59.119 37.500 15.91 0.00 0.00 0.98
222 223 3.696051 AGGTGCGCATGAAATCAACTAAT 59.304 39.130 15.91 0.00 0.00 1.73
223 224 3.081061 AGGTGCGCATGAAATCAACTAA 58.919 40.909 15.91 0.00 0.00 2.24
224 225 2.710377 AGGTGCGCATGAAATCAACTA 58.290 42.857 15.91 0.00 0.00 2.24
225 226 1.538047 AGGTGCGCATGAAATCAACT 58.462 45.000 15.91 0.00 0.00 3.16
226 227 2.352503 AAGGTGCGCATGAAATCAAC 57.647 45.000 15.91 0.00 0.00 3.18
227 228 2.295629 TGAAAGGTGCGCATGAAATCAA 59.704 40.909 15.91 0.00 0.00 2.57
228 229 1.885233 TGAAAGGTGCGCATGAAATCA 59.115 42.857 15.91 12.39 0.00 2.57
229 230 2.253603 GTGAAAGGTGCGCATGAAATC 58.746 47.619 15.91 9.74 0.00 2.17
230 231 1.067635 GGTGAAAGGTGCGCATGAAAT 60.068 47.619 15.91 0.00 0.00 2.17
231 232 0.313672 GGTGAAAGGTGCGCATGAAA 59.686 50.000 15.91 0.00 0.00 2.69
232 233 0.537143 AGGTGAAAGGTGCGCATGAA 60.537 50.000 15.91 0.00 0.00 2.57
233 234 0.955428 GAGGTGAAAGGTGCGCATGA 60.955 55.000 15.91 0.00 0.00 3.07
234 235 1.236616 TGAGGTGAAAGGTGCGCATG 61.237 55.000 15.91 0.00 0.00 4.06
235 236 1.073025 TGAGGTGAAAGGTGCGCAT 59.927 52.632 15.91 0.00 0.00 4.73
236 237 1.891919 GTGAGGTGAAAGGTGCGCA 60.892 57.895 5.66 5.66 0.00 6.09
237 238 2.617274 GGTGAGGTGAAAGGTGCGC 61.617 63.158 0.00 0.00 0.00 6.09
238 239 0.606401 ATGGTGAGGTGAAAGGTGCG 60.606 55.000 0.00 0.00 0.00 5.34
239 240 2.084546 GTATGGTGAGGTGAAAGGTGC 58.915 52.381 0.00 0.00 0.00 5.01
240 241 3.417069 TGTATGGTGAGGTGAAAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
241 242 3.873801 GCATGTATGGTGAGGTGAAAGGT 60.874 47.826 0.00 0.00 0.00 3.50
242 243 2.684881 GCATGTATGGTGAGGTGAAAGG 59.315 50.000 0.00 0.00 0.00 3.11
243 244 2.684881 GGCATGTATGGTGAGGTGAAAG 59.315 50.000 0.00 0.00 0.00 2.62
244 245 2.040947 TGGCATGTATGGTGAGGTGAAA 59.959 45.455 0.00 0.00 0.00 2.69
245 246 1.632920 TGGCATGTATGGTGAGGTGAA 59.367 47.619 0.00 0.00 0.00 3.18
246 247 1.065491 GTGGCATGTATGGTGAGGTGA 60.065 52.381 0.00 0.00 0.00 4.02
247 248 1.382522 GTGGCATGTATGGTGAGGTG 58.617 55.000 0.00 0.00 0.00 4.00
248 249 0.255890 GGTGGCATGTATGGTGAGGT 59.744 55.000 0.00 0.00 0.00 3.85
249 250 0.548031 AGGTGGCATGTATGGTGAGG 59.452 55.000 0.00 0.00 0.00 3.86
250 251 2.425143 AAGGTGGCATGTATGGTGAG 57.575 50.000 0.00 0.00 0.00 3.51
251 252 3.457749 TGATAAGGTGGCATGTATGGTGA 59.542 43.478 0.00 0.00 0.00 4.02
252 253 3.819368 TGATAAGGTGGCATGTATGGTG 58.181 45.455 0.00 0.00 0.00 4.17
253 254 4.518278 TTGATAAGGTGGCATGTATGGT 57.482 40.909 0.00 0.00 0.00 3.55
254 255 4.889409 ACTTTGATAAGGTGGCATGTATGG 59.111 41.667 0.00 0.00 35.61 2.74
255 256 6.455360 AACTTTGATAAGGTGGCATGTATG 57.545 37.500 0.00 0.00 35.61 2.39
256 257 5.594317 GGAACTTTGATAAGGTGGCATGTAT 59.406 40.000 0.00 0.00 35.61 2.29
257 258 4.947388 GGAACTTTGATAAGGTGGCATGTA 59.053 41.667 0.00 0.00 35.61 2.29
258 259 3.763897 GGAACTTTGATAAGGTGGCATGT 59.236 43.478 0.00 0.00 35.61 3.21
259 260 3.763360 TGGAACTTTGATAAGGTGGCATG 59.237 43.478 0.00 0.00 35.61 4.06
260 261 3.763897 GTGGAACTTTGATAAGGTGGCAT 59.236 43.478 0.00 0.00 35.61 4.40
261 262 3.153919 GTGGAACTTTGATAAGGTGGCA 58.846 45.455 0.00 0.00 35.61 4.92
262 263 3.850122 GTGGAACTTTGATAAGGTGGC 57.150 47.619 0.00 0.00 35.61 5.01
276 277 3.921119 TTCATGCATGTTGAGTGGAAC 57.079 42.857 25.43 0.00 0.00 3.62
277 278 4.933505 TTTTCATGCATGTTGAGTGGAA 57.066 36.364 25.43 7.77 0.00 3.53
278 279 4.933505 TTTTTCATGCATGTTGAGTGGA 57.066 36.364 25.43 1.24 0.00 4.02
297 298 5.944007 AGCATAACGTAATGGAGGACTTTTT 59.056 36.000 0.00 0.00 0.00 1.94
298 299 5.497474 AGCATAACGTAATGGAGGACTTTT 58.503 37.500 0.00 0.00 0.00 2.27
299 300 5.099042 AGCATAACGTAATGGAGGACTTT 57.901 39.130 0.00 0.00 0.00 2.66
300 301 4.755266 AGCATAACGTAATGGAGGACTT 57.245 40.909 0.00 0.00 0.00 3.01
301 302 4.894114 AGTAGCATAACGTAATGGAGGACT 59.106 41.667 0.00 0.00 0.00 3.85
302 303 5.197682 AGTAGCATAACGTAATGGAGGAC 57.802 43.478 0.00 0.00 0.00 3.85
303 304 5.864418 AAGTAGCATAACGTAATGGAGGA 57.136 39.130 0.00 0.00 0.00 3.71
304 305 9.871238 AATATAAGTAGCATAACGTAATGGAGG 57.129 33.333 0.00 0.00 0.00 4.30
395 396 9.638176 ATGGTAAGAAGCTTCTATCATTGAATT 57.362 29.630 28.67 11.81 36.28 2.17
396 397 9.638176 AATGGTAAGAAGCTTCTATCATTGAAT 57.362 29.630 30.10 17.98 36.28 2.57
405 406 9.383519 CAGTGATTTAATGGTAAGAAGCTTCTA 57.616 33.333 28.67 14.06 36.28 2.10
406 407 8.103305 TCAGTGATTTAATGGTAAGAAGCTTCT 58.897 33.333 23.49 23.49 39.74 2.85
407 408 8.268850 TCAGTGATTTAATGGTAAGAAGCTTC 57.731 34.615 19.11 19.11 0.00 3.86
408 409 8.635765 TTCAGTGATTTAATGGTAAGAAGCTT 57.364 30.769 0.00 0.00 0.00 3.74
409 410 8.635765 TTTCAGTGATTTAATGGTAAGAAGCT 57.364 30.769 0.00 0.00 0.00 3.74
426 427 8.506437 GGAATCGATTGCAATATATTTCAGTGA 58.494 33.333 22.97 0.00 0.00 3.41
427 428 7.752239 GGGAATCGATTGCAATATATTTCAGTG 59.248 37.037 27.71 0.00 0.00 3.66
428 429 7.448161 TGGGAATCGATTGCAATATATTTCAGT 59.552 33.333 27.71 0.00 0.00 3.41
429 430 7.752239 GTGGGAATCGATTGCAATATATTTCAG 59.248 37.037 27.71 0.00 0.00 3.02
430 431 7.230309 TGTGGGAATCGATTGCAATATATTTCA 59.770 33.333 27.71 12.42 0.00 2.69
431 432 7.592938 TGTGGGAATCGATTGCAATATATTTC 58.407 34.615 27.71 12.95 0.00 2.17
432 433 7.523293 TGTGGGAATCGATTGCAATATATTT 57.477 32.000 27.71 4.09 0.00 1.40
433 434 7.014134 TGTTGTGGGAATCGATTGCAATATATT 59.986 33.333 27.71 14.35 0.00 1.28
434 435 6.489700 TGTTGTGGGAATCGATTGCAATATAT 59.510 34.615 27.71 6.04 0.00 0.86
435 436 5.825151 TGTTGTGGGAATCGATTGCAATATA 59.175 36.000 27.71 11.38 0.00 0.86
436 437 4.644234 TGTTGTGGGAATCGATTGCAATAT 59.356 37.500 27.71 0.00 0.00 1.28
437 438 4.013050 TGTTGTGGGAATCGATTGCAATA 58.987 39.130 27.71 14.98 0.00 1.90
438 439 2.824936 TGTTGTGGGAATCGATTGCAAT 59.175 40.909 27.71 12.83 0.00 3.56
439 440 2.234143 TGTTGTGGGAATCGATTGCAA 58.766 42.857 27.71 16.91 0.00 4.08
440 441 1.902938 TGTTGTGGGAATCGATTGCA 58.097 45.000 27.71 13.41 0.00 4.08
441 442 2.595386 GTTGTTGTGGGAATCGATTGC 58.405 47.619 20.25 20.25 0.00 3.56
442 443 2.850321 CGTTGTTGTGGGAATCGATTG 58.150 47.619 16.96 0.00 0.00 2.67
443 444 1.199097 GCGTTGTTGTGGGAATCGATT 59.801 47.619 11.20 11.20 0.00 3.34
444 445 0.802494 GCGTTGTTGTGGGAATCGAT 59.198 50.000 0.00 0.00 0.00 3.59
445 446 0.533085 TGCGTTGTTGTGGGAATCGA 60.533 50.000 0.00 0.00 0.00 3.59
446 447 0.385473 GTGCGTTGTTGTGGGAATCG 60.385 55.000 0.00 0.00 0.00 3.34
447 448 0.385473 CGTGCGTTGTTGTGGGAATC 60.385 55.000 0.00 0.00 0.00 2.52
448 449 1.652012 CGTGCGTTGTTGTGGGAAT 59.348 52.632 0.00 0.00 0.00 3.01
449 450 2.473760 CCGTGCGTTGTTGTGGGAA 61.474 57.895 0.00 0.00 0.00 3.97
450 451 2.897846 CCGTGCGTTGTTGTGGGA 60.898 61.111 0.00 0.00 0.00 4.37
451 452 3.959975 CCCGTGCGTTGTTGTGGG 61.960 66.667 0.00 0.00 0.00 4.61
452 453 1.231958 ATACCCGTGCGTTGTTGTGG 61.232 55.000 0.00 0.00 0.00 4.17
453 454 0.589223 AATACCCGTGCGTTGTTGTG 59.411 50.000 0.00 0.00 0.00 3.33
454 455 2.166821 TAATACCCGTGCGTTGTTGT 57.833 45.000 0.00 0.00 0.00 3.32
455 456 2.933906 AGATAATACCCGTGCGTTGTTG 59.066 45.455 0.00 0.00 0.00 3.33
456 457 3.255969 AGATAATACCCGTGCGTTGTT 57.744 42.857 0.00 0.00 0.00 2.83
457 458 2.973694 AGATAATACCCGTGCGTTGT 57.026 45.000 0.00 0.00 0.00 3.32
458 459 3.973657 ACTAGATAATACCCGTGCGTTG 58.026 45.455 0.00 0.00 0.00 4.10
459 460 4.660789 AACTAGATAATACCCGTGCGTT 57.339 40.909 0.00 0.00 0.00 4.84
460 461 4.098349 TGAAACTAGATAATACCCGTGCGT 59.902 41.667 0.00 0.00 0.00 5.24
461 462 4.443394 GTGAAACTAGATAATACCCGTGCG 59.557 45.833 0.00 0.00 0.00 5.34
462 463 4.748600 GGTGAAACTAGATAATACCCGTGC 59.251 45.833 0.00 0.00 36.74 5.34
463 464 4.980434 CGGTGAAACTAGATAATACCCGTG 59.020 45.833 0.00 0.00 36.74 4.94
464 465 4.646492 ACGGTGAAACTAGATAATACCCGT 59.354 41.667 0.00 2.41 36.74 5.28
465 466 5.192327 ACGGTGAAACTAGATAATACCCG 57.808 43.478 0.00 1.76 36.74 5.28
466 467 7.150640 CCTAACGGTGAAACTAGATAATACCC 58.849 42.308 0.00 0.00 36.74 3.69
467 468 7.014615 TCCCTAACGGTGAAACTAGATAATACC 59.985 40.741 0.00 0.00 36.74 2.73
468 469 7.945134 TCCCTAACGGTGAAACTAGATAATAC 58.055 38.462 0.00 0.00 36.74 1.89
469 470 8.537728 TTCCCTAACGGTGAAACTAGATAATA 57.462 34.615 0.00 0.00 36.74 0.98
470 471 7.427989 TTCCCTAACGGTGAAACTAGATAAT 57.572 36.000 0.00 0.00 36.74 1.28
471 472 6.855763 TTCCCTAACGGTGAAACTAGATAA 57.144 37.500 0.00 0.00 36.74 1.75
472 473 6.633856 GTTTCCCTAACGGTGAAACTAGATA 58.366 40.000 12.12 0.00 41.81 1.98
473 474 5.485620 GTTTCCCTAACGGTGAAACTAGAT 58.514 41.667 12.12 0.00 41.81 1.98
474 475 4.886579 GTTTCCCTAACGGTGAAACTAGA 58.113 43.478 12.12 0.00 41.81 2.43
551 552 2.281761 GACTGTGGTGGCCTGGTG 60.282 66.667 3.32 0.00 0.00 4.17
552 553 3.570212 GGACTGTGGTGGCCTGGT 61.570 66.667 3.32 0.00 0.00 4.00
553 554 3.569210 TGGACTGTGGTGGCCTGG 61.569 66.667 3.32 0.00 0.00 4.45
554 555 2.281761 GTGGACTGTGGTGGCCTG 60.282 66.667 3.32 0.00 0.00 4.85
555 556 2.772191 TGTGGACTGTGGTGGCCT 60.772 61.111 3.32 0.00 0.00 5.19
556 557 2.594592 GTGTGGACTGTGGTGGCC 60.595 66.667 0.00 0.00 0.00 5.36
557 558 2.594592 GGTGTGGACTGTGGTGGC 60.595 66.667 0.00 0.00 0.00 5.01
558 559 2.113139 GGGTGTGGACTGTGGTGG 59.887 66.667 0.00 0.00 0.00 4.61
559 560 2.113139 GGGGTGTGGACTGTGGTG 59.887 66.667 0.00 0.00 0.00 4.17
564 566 1.810151 CAATTAACGGGGTGTGGACTG 59.190 52.381 0.00 0.00 0.00 3.51
605 607 3.557686 GCCATCCTGCATTTGTTTTTCCT 60.558 43.478 0.00 0.00 0.00 3.36
635 637 3.435671 CAGGACACCGTTTAATTGTCTCC 59.564 47.826 0.00 0.00 39.72 3.71
668 670 5.221087 GCAGGTAACACTAGATAGAGACACC 60.221 48.000 0.00 0.20 41.41 4.16
731 735 2.579684 CTTGTCCCCTGACCTAGCGC 62.580 65.000 0.00 0.00 41.01 5.92
876 881 3.854286 AGTCAAGTAAACGCGTCAAAG 57.146 42.857 14.44 0.61 0.00 2.77
928 933 1.801332 CAGCCTTGCAGCAAGCTAG 59.199 57.895 27.32 16.05 45.94 3.42
977 987 1.813786 GTCGTAGGAGAGTTCTGCTGT 59.186 52.381 12.72 0.00 44.59 4.40
988 998 0.872021 GCTTGCATCGGTCGTAGGAG 60.872 60.000 0.00 0.00 0.00 3.69
1106 1155 2.887568 CAGTGCGGCTAAGCTCGG 60.888 66.667 0.00 0.00 38.13 4.63
1107 1156 2.887568 CCAGTGCGGCTAAGCTCG 60.888 66.667 0.00 0.00 38.13 5.03
1139 1188 3.243907 CGACTTGAAGAAGAGGAGGTTGT 60.244 47.826 0.00 0.00 32.98 3.32
1152 1201 1.071605 CCGAAAGCTCCGACTTGAAG 58.928 55.000 9.67 0.00 0.00 3.02
1182 1231 1.728971 GTGTTCCATGAAGACAGAGCG 59.271 52.381 0.00 0.00 36.13 5.03
1255 1304 4.421479 CAGCGCGACGACCCTCTT 62.421 66.667 12.10 0.00 0.00 2.85
1273 1322 1.004918 GGTGGGACGAGTTGAGGTG 60.005 63.158 0.00 0.00 0.00 4.00
1485 1534 3.871594 GGTTATTCCTGACATTGAGGACG 59.128 47.826 0.00 0.00 39.44 4.79
1701 1750 6.510813 GTTGTTAAACTGGAGCGAAAGCAAG 61.511 44.000 0.00 0.00 46.20 4.01
1941 1990 1.804748 GGAACCGTGCCACTAAAGAAG 59.195 52.381 0.00 0.00 0.00 2.85
1987 2036 1.537776 CGAGAGAGCCAGCGATTCAAT 60.538 52.381 0.00 0.00 0.00 2.57
2133 2182 3.735208 CGAGCGATGTTGACAGGTTAGAT 60.735 47.826 0.00 0.00 0.00 1.98
2196 2245 6.278172 AGAAGATTTCCAATTCTTTCAGGC 57.722 37.500 0.00 0.00 32.46 4.85
2382 2431 2.009774 CTGAAAGTATTGTGCCCGAGG 58.990 52.381 0.00 0.00 0.00 4.63
2451 2500 4.667262 TCAAGTTGTTGGTTGACAAATCG 58.333 39.130 2.11 0.00 41.58 3.34
2718 2767 8.120538 TCTAGGATTTCTAAACCCTTCAGTCTA 58.879 37.037 0.00 0.00 0.00 2.59
2753 2802 5.185056 GGTATTTGGCCTGATAACTTGTTGT 59.815 40.000 3.32 0.00 0.00 3.32
2760 2809 5.914898 ACTTTGGTATTTGGCCTGATAAC 57.085 39.130 3.32 5.65 0.00 1.89
2835 2884 1.671845 GTAAACGGCACTTCACCAACA 59.328 47.619 0.00 0.00 0.00 3.33
2887 2936 7.039082 ACCACAAAGTTTATCATTACCTTGCAT 60.039 33.333 0.00 0.00 0.00 3.96
2976 3025 6.872585 AGGGGAATAATGATTGCTTTCAAA 57.127 33.333 0.00 0.00 35.56 2.69
2983 3032 4.320494 CGCAACTAGGGGAATAATGATTGC 60.320 45.833 0.00 0.00 37.22 3.56
3201 3250 1.760875 GTCACCCCTATCTCCGCCA 60.761 63.158 0.00 0.00 0.00 5.69
3498 3547 5.631512 GGAGTGAAGATAATCGAGTGCATAC 59.368 44.000 0.00 0.00 0.00 2.39
3694 3743 2.436109 GGGCAAACCTGGAGCAGA 59.564 61.111 0.00 0.00 35.85 4.26
3709 3758 0.817654 GGGGAAGAAAGCAAATCGGG 59.182 55.000 0.00 0.00 0.00 5.14
3716 3765 2.158325 AGGAAACATGGGGAAGAAAGCA 60.158 45.455 0.00 0.00 0.00 3.91
3717 3766 2.529632 AGGAAACATGGGGAAGAAAGC 58.470 47.619 0.00 0.00 0.00 3.51
3880 3929 4.811024 CCGTGTATGAACATGCTATCAGTT 59.189 41.667 0.00 0.00 40.67 3.16
3883 3932 4.664150 TCCGTGTATGAACATGCTATCA 57.336 40.909 0.00 0.00 40.67 2.15
3901 3950 5.760253 AGCATACTTGTGGAGATTTAATCCG 59.240 40.000 0.78 0.00 39.91 4.18
3985 4034 3.706373 GCTGGCGACCCCTTCTCA 61.706 66.667 0.00 0.00 0.00 3.27
4087 4137 3.388552 TCCTGAGAGCAAGATACTCCA 57.611 47.619 0.00 0.00 34.56 3.86
4102 4152 1.207089 CTACTCACGGGCATTTCCTGA 59.793 52.381 0.00 0.00 44.37 3.86
4199 4249 2.426651 GCATCTGGCATGCCTTCAT 58.573 52.632 35.53 21.49 43.97 2.57
4200 4250 3.929002 GCATCTGGCATGCCTTCA 58.071 55.556 35.53 20.22 43.97 3.02
4250 4302 7.708322 TGCTACTAATTGAAGAATAGTGCTCAG 59.292 37.037 0.00 0.00 0.00 3.35
4280 4332 9.270640 GCAGATGTATGAAAAATGTAGAGAGAT 57.729 33.333 0.00 0.00 0.00 2.75
4357 4409 8.488651 TCCCGAAGAGAATTACTTTTTGATAC 57.511 34.615 0.00 0.00 0.00 2.24
4589 4679 8.971073 CCTTAGGTAATCATTCATGGTTCTTTT 58.029 33.333 0.00 0.00 32.49 2.27
4662 4752 6.369065 CCTGACTGTTTGTGTTAGAGGTAATC 59.631 42.308 0.00 0.00 0.00 1.75
4663 4753 6.231211 CCTGACTGTTTGTGTTAGAGGTAAT 58.769 40.000 0.00 0.00 0.00 1.89
4664 4754 5.454187 CCCTGACTGTTTGTGTTAGAGGTAA 60.454 44.000 0.00 0.00 0.00 2.85
4665 4755 4.039973 CCCTGACTGTTTGTGTTAGAGGTA 59.960 45.833 0.00 0.00 0.00 3.08
4666 4756 3.181454 CCCTGACTGTTTGTGTTAGAGGT 60.181 47.826 0.00 0.00 0.00 3.85
4667 4757 3.403038 CCCTGACTGTTTGTGTTAGAGG 58.597 50.000 0.00 0.00 0.00 3.69
4668 4758 3.403038 CCCCTGACTGTTTGTGTTAGAG 58.597 50.000 0.00 0.00 0.00 2.43
4669 4759 2.105821 CCCCCTGACTGTTTGTGTTAGA 59.894 50.000 0.00 0.00 0.00 2.10
4690 4780 4.142609 TCATGTCCAAATCCTAGCTCAC 57.857 45.455 0.00 0.00 0.00 3.51
4712 4802 2.702270 ATTTTCCTTCCTTGCACCCT 57.298 45.000 0.00 0.00 0.00 4.34
4719 4809 7.958088 TGGAACGATTTTTATTTTCCTTCCTT 58.042 30.769 0.00 0.00 37.27 3.36
4720 4810 7.533289 TGGAACGATTTTTATTTTCCTTCCT 57.467 32.000 0.00 0.00 37.27 3.36
4721 4811 8.655970 CATTGGAACGATTTTTATTTTCCTTCC 58.344 33.333 0.00 0.00 37.27 3.46
4722 4812 8.655970 CCATTGGAACGATTTTTATTTTCCTTC 58.344 33.333 0.00 0.00 37.27 3.46
4734 4824 1.272212 GTGGTGCCATTGGAACGATTT 59.728 47.619 6.95 0.00 30.21 2.17
4746 4836 0.321210 CGTATTCCTGTGTGGTGCCA 60.321 55.000 0.00 0.00 37.07 4.92
4791 4881 4.024218 GCTGCAAAGGTCATATCTGATGAC 60.024 45.833 8.82 8.82 45.59 3.06
4849 4957 1.692519 AGTAGACCCGTGTTTCAAGCT 59.307 47.619 0.00 0.00 0.00 3.74
4862 4970 8.697292 AGAGGTAGAATACAATGAAAGTAGACC 58.303 37.037 0.00 0.00 45.43 3.85
4868 4976 7.659390 GGATGGAGAGGTAGAATACAATGAAAG 59.341 40.741 0.00 0.00 45.43 2.62
4994 5105 5.593095 ACGGAACTGCTGTATATAGAAGTCA 59.407 40.000 10.37 0.00 35.46 3.41
5007 5118 2.386661 ATCAAGGTACGGAACTGCTG 57.613 50.000 0.00 0.00 0.00 4.41
5040 5151 3.190327 CACCGGCATTGTAAATCAACAGA 59.810 43.478 0.00 0.00 38.97 3.41
5041 5152 3.190327 TCACCGGCATTGTAAATCAACAG 59.810 43.478 0.00 0.00 38.97 3.16
5042 5153 3.149981 TCACCGGCATTGTAAATCAACA 58.850 40.909 0.00 0.00 38.97 3.33
5094 5205 1.890510 ACTCCACGGCGGTTGAAAC 60.891 57.895 13.24 0.00 35.57 2.78
5095 5206 1.890041 CACTCCACGGCGGTTGAAA 60.890 57.895 13.24 0.00 35.57 2.69
5154 5265 0.793250 GCTTCTCGGTTCTTGCTGAC 59.207 55.000 0.00 0.00 0.00 3.51
5160 5271 2.973945 GGTATGTGCTTCTCGGTTCTT 58.026 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.