Multiple sequence alignment - TraesCS5A01G284800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G284800 chr5A 100.000 4375 0 0 1 4375 492906231 492901857 0 8080
1 TraesCS5A01G284800 chr5D 94.152 4429 171 40 1 4375 389599239 389594845 0 6663
2 TraesCS5A01G284800 chr5B 93.090 4457 191 47 1 4375 469832733 469828312 0 6416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G284800 chr5A 492901857 492906231 4374 True 8080 8080 100.000 1 4375 1 chr5A.!!$R1 4374
1 TraesCS5A01G284800 chr5D 389594845 389599239 4394 True 6663 6663 94.152 1 4375 1 chr5D.!!$R1 4374
2 TraesCS5A01G284800 chr5B 469828312 469832733 4421 True 6416 6416 93.090 1 4375 1 chr5B.!!$R1 4374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 588 0.324943 ATTTGCGATATCCTCCCCGG 59.675 55.0 0.0 0.0 0.0 5.73 F
1329 1358 0.108585 TGGTTCCTCTCCTGTTGTGC 59.891 55.0 0.0 0.0 0.0 4.57 F
2589 2642 0.687354 GTCCCAGCTCAACCTCAGAA 59.313 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 1902 0.920763 TGAACCAGCCCCCATCTGAT 60.921 55.0 0.0 0.0 33.54 2.90 R
3146 3201 0.036732 CTGTCCTGCCTTTGGTGCTA 59.963 55.0 0.0 0.0 0.00 3.49 R
4345 4448 1.035932 ATCATGCAAGCCACCAGAGC 61.036 55.0 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.169789 CGCATCAACCTCCAGCTCG 61.170 63.158 0.00 0.00 0.00 5.03
128 129 3.965258 TGGGCCATGGCGTGACTT 61.965 61.111 29.90 0.00 43.06 3.01
200 201 1.541310 TTCCTTCGACGGTGGATGCT 61.541 55.000 7.94 0.00 0.00 3.79
203 204 3.350909 TTCGACGGTGGATGCTCGG 62.351 63.158 0.00 0.00 0.00 4.63
247 248 0.530870 GTAGCATGGACGGGCTCTTC 60.531 60.000 0.00 0.00 41.41 2.87
262 263 1.003696 CTCTTCACCCACTTCCCCTTC 59.996 57.143 0.00 0.00 0.00 3.46
297 306 3.108521 GTGTGCACGTACTCCAGAG 57.891 57.895 13.13 0.00 0.00 3.35
442 451 2.099405 CCAGTTGTGTGTCCACCTTTT 58.901 47.619 0.00 0.00 41.09 2.27
445 454 3.065371 CAGTTGTGTGTCCACCTTTTCTC 59.935 47.826 0.00 0.00 41.09 2.87
446 455 3.054361 AGTTGTGTGTCCACCTTTTCTCT 60.054 43.478 0.00 0.00 41.09 3.10
450 459 3.066760 GTGTGTCCACCTTTTCTCTTTGG 59.933 47.826 0.00 0.00 35.44 3.28
453 462 0.969149 CCACCTTTTCTCTTTGGCCC 59.031 55.000 0.00 0.00 0.00 5.80
528 537 2.132762 CGCGGAAACCCATAGACATAC 58.867 52.381 0.00 0.00 0.00 2.39
579 588 0.324943 ATTTGCGATATCCTCCCCGG 59.675 55.000 0.00 0.00 0.00 5.73
814 824 2.612251 CCCTCTCTCTCCTCCCCC 59.388 72.222 0.00 0.00 0.00 5.40
938 948 2.378038 CAGAGGAACAGAGAGGGAGAG 58.622 57.143 0.00 0.00 0.00 3.20
948 958 1.963515 GAGAGGGAGAGAGAGCAATCC 59.036 57.143 0.00 0.00 0.00 3.01
955 965 0.387565 GAGAGAGCAATCCCTCGTCC 59.612 60.000 0.00 0.00 36.95 4.79
991 1004 3.003173 TTGCCCTCCGGTCCTCTG 61.003 66.667 0.00 0.00 0.00 3.35
1018 1031 1.340600 CCATGTCCATTGGTAACCCGT 60.341 52.381 1.86 0.00 0.00 5.28
1019 1032 2.014128 CATGTCCATTGGTAACCCGTC 58.986 52.381 1.86 0.00 0.00 4.79
1020 1033 1.354101 TGTCCATTGGTAACCCGTCT 58.646 50.000 1.86 0.00 0.00 4.18
1058 1071 2.391389 CCCGCCTCGAAACTGCTTC 61.391 63.158 0.00 0.00 0.00 3.86
1130 1143 0.849417 ATCTCTGCCTCCATTTCCCC 59.151 55.000 0.00 0.00 0.00 4.81
1160 1173 0.255890 TTGATGGCTAGGGTTCTGGC 59.744 55.000 0.00 0.00 45.33 4.85
1178 1191 1.322442 GCTCTGTTTCTGCCCTGTTT 58.678 50.000 0.00 0.00 0.00 2.83
1179 1192 1.268079 GCTCTGTTTCTGCCCTGTTTC 59.732 52.381 0.00 0.00 0.00 2.78
1286 1315 5.027737 TGCACAGATTCGAAATAAAATCGC 58.972 37.500 0.00 0.00 40.04 4.58
1329 1358 0.108585 TGGTTCCTCTCCTGTTGTGC 59.891 55.000 0.00 0.00 0.00 4.57
1535 1565 1.347050 TCTCTGCTTCTGCTTCTGCTT 59.653 47.619 0.00 0.00 40.48 3.91
1540 1570 2.479856 GCTTCTGCTTCTGCTTCTGCA 61.480 52.381 0.00 0.00 40.72 4.41
1545 1588 2.032528 TTCTGCTTCTGCACCCCG 59.967 61.111 0.00 0.00 45.31 5.73
1684 1728 9.226606 TGTCAAGGTATGTTTAATTTCCTACTG 57.773 33.333 0.00 0.00 0.00 2.74
1736 1780 4.160252 AGTCAAGTGTGCTGGTTTGATTTT 59.840 37.500 0.00 0.00 32.76 1.82
1738 1782 4.869297 TCAAGTGTGCTGGTTTGATTTTTG 59.131 37.500 0.00 0.00 0.00 2.44
1752 1805 4.636249 TGATTTTTGTATTGGTGGTTGCC 58.364 39.130 0.00 0.00 0.00 4.52
1753 1806 2.802787 TTTTGTATTGGTGGTTGCCG 57.197 45.000 0.00 0.00 0.00 5.69
1825 1878 5.306419 CCAAGTCCTCATGGATCTCAATCTA 59.694 44.000 0.00 0.00 45.29 1.98
1849 1902 6.356556 AGTGATAAGCAAGGCATACATAACA 58.643 36.000 0.00 0.00 0.00 2.41
1861 1914 2.664402 ACATAACATCAGATGGGGGC 57.336 50.000 15.13 0.00 33.60 5.80
1882 1935 4.210331 GCTGGTTCATGGATGGTAAGATT 58.790 43.478 0.00 0.00 0.00 2.40
1891 1944 6.828273 TCATGGATGGTAAGATTTTACACCTG 59.172 38.462 8.28 8.08 40.77 4.00
1917 1970 9.301897 GATAAAATCTAATAAATGGTGCCCTCT 57.698 33.333 0.00 0.00 0.00 3.69
1924 1977 2.755952 AATGGTGCCCTCTATTTCCC 57.244 50.000 0.00 0.00 0.00 3.97
1942 1995 4.380843 TCCCTGCTCCTTTTTGTTGATA 57.619 40.909 0.00 0.00 0.00 2.15
2108 2161 7.041721 TCAGTTCACCAGTCATGTATGATTAC 58.958 38.462 0.00 0.00 39.30 1.89
2176 2229 1.660560 CCTTGGGCGCAGATTCAAGG 61.661 60.000 21.75 21.75 46.61 3.61
2224 2277 2.813908 GTCGCCGCTTCAACCGAT 60.814 61.111 0.00 0.00 31.96 4.18
2284 2337 1.215117 GCTCTCTGAAGTCAGCGCT 59.785 57.895 2.64 2.64 43.46 5.92
2367 2420 2.163390 CAGCCGTGATGCGAGTCAG 61.163 63.158 0.00 0.00 44.77 3.51
2506 2559 1.600916 GGGGACTTCTGCCACACAC 60.601 63.158 0.00 0.00 0.00 3.82
2589 2642 0.687354 GTCCCAGCTCAACCTCAGAA 59.313 55.000 0.00 0.00 0.00 3.02
2944 2999 1.200948 GTCATCCAGTGCCTTGAAAGC 59.799 52.381 0.00 0.00 0.00 3.51
3092 3147 3.382832 AAGGTCGGCCTCCTGTCG 61.383 66.667 10.20 0.00 46.33 4.35
3146 3201 1.765314 ACTGTCACAAGAGCAGAGGTT 59.235 47.619 0.00 0.00 34.60 3.50
3191 3246 0.736325 ACACATTCTACGTCCGCAGC 60.736 55.000 0.00 0.00 0.00 5.25
3251 3306 1.204146 TCAGGGAAGCCATAGGACAC 58.796 55.000 0.00 0.00 0.00 3.67
3335 3396 3.056393 TCCTCTTCGCAAACTTATTCCGA 60.056 43.478 0.00 0.00 0.00 4.55
3391 3452 1.188138 GTAATGCTCGCATCGAACTCG 59.812 52.381 4.68 0.00 34.74 4.18
3398 3459 0.456142 CGCATCGAACTCGGAGAACA 60.456 55.000 12.86 0.00 40.29 3.18
3624 3686 3.003480 GAGAACATGTCCTCTTTTCCGG 58.997 50.000 4.60 0.00 0.00 5.14
3625 3687 2.084546 GAACATGTCCTCTTTTCCGGG 58.915 52.381 0.00 0.00 0.00 5.73
3644 3706 4.072131 CGGGAAAAGAATCAGGTGAAGAA 58.928 43.478 0.00 0.00 0.00 2.52
3645 3707 4.518970 CGGGAAAAGAATCAGGTGAAGAAA 59.481 41.667 0.00 0.00 0.00 2.52
3869 3951 1.841663 TTCGCCGAAGCTTTGCTGAC 61.842 55.000 16.76 3.21 39.62 3.51
3871 3953 1.208614 GCCGAAGCTTTGCTGACAG 59.791 57.895 8.32 0.00 39.62 3.51
3926 4008 6.312180 CCTAACAAGACCGAGTAATAAACACC 59.688 42.308 0.00 0.00 0.00 4.16
4000 4089 1.107114 ACCTCACACTAGCTCCGATG 58.893 55.000 0.00 0.00 0.00 3.84
4120 4217 1.006832 GTAGTGGTAGCACGCAATGG 58.993 55.000 18.73 0.00 0.00 3.16
4138 4238 1.351017 TGGGAGTCAGTTTGGGATGTC 59.649 52.381 0.00 0.00 0.00 3.06
4228 4329 4.458642 CACATGTGTGTTCCATGATTGGTA 59.541 41.667 18.03 0.00 41.78 3.25
4232 4333 2.486203 TGTGTTCCATGATTGGTAACGC 59.514 45.455 0.00 10.94 44.06 4.84
4253 4354 2.291540 CCTGACCTAAAAAGGCATGGGA 60.292 50.000 0.00 0.00 0.00 4.37
4254 4355 3.430453 CTGACCTAAAAAGGCATGGGAA 58.570 45.455 0.00 0.00 0.00 3.97
4297 4400 8.344831 GCAAGACTGATACATAAATAATGCACA 58.655 33.333 0.00 0.00 39.39 4.57
4301 4404 8.962884 ACTGATACATAAATAATGCACACTGA 57.037 30.769 0.00 0.00 39.39 3.41
4314 4417 1.898472 CACACTGAGGTGAGGTCAGAT 59.102 52.381 7.09 0.00 43.65 2.90
4339 4442 0.393402 CAGGGCATTGCTGAGCAGTA 60.393 55.000 7.39 0.00 40.61 2.74
4342 4445 1.133790 GGGCATTGCTGAGCAGTAAAG 59.866 52.381 7.39 2.56 40.61 1.85
4343 4446 1.468736 GGCATTGCTGAGCAGTAAAGC 60.469 52.381 16.48 16.48 43.54 3.51
4345 4448 1.089920 ATTGCTGAGCAGTAAAGCCG 58.910 50.000 7.39 0.00 40.61 5.52
4346 4449 1.577328 TTGCTGAGCAGTAAAGCCGC 61.577 55.000 7.39 0.00 40.61 6.53
4347 4450 1.743252 GCTGAGCAGTAAAGCCGCT 60.743 57.895 0.00 0.00 39.12 5.52
4350 4453 2.378028 GAGCAGTAAAGCCGCTCTG 58.622 57.895 0.00 0.00 46.86 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.704070 GAGCACTTTCTCGAGGACAC 58.296 55.000 13.56 0.00 0.00 3.67
128 129 6.656314 ACGATGCAAATGAAATTACGTAGA 57.344 33.333 0.00 0.00 33.67 2.59
247 248 2.041081 TGTATTGAAGGGGAAGTGGGTG 59.959 50.000 0.00 0.00 0.00 4.61
262 263 2.138355 ACGTGCGTGTCGTGTATTG 58.862 52.632 0.00 0.00 40.07 1.90
284 285 4.252971 TCTTTTTCCTCTGGAGTACGTG 57.747 45.455 0.00 0.00 31.21 4.49
285 286 5.485209 AATCTTTTTCCTCTGGAGTACGT 57.515 39.130 0.00 0.00 31.21 3.57
297 306 2.809446 GCCACGGCATAATCTTTTTCC 58.191 47.619 2.36 0.00 41.49 3.13
360 369 3.426008 GTTTACGAACGCACCACAC 57.574 52.632 0.00 0.00 0.00 3.82
450 459 3.607370 AAACGAGAGAAGGCGGGGC 62.607 63.158 0.00 0.00 0.00 5.80
453 462 1.461127 CTTGAAAACGAGAGAAGGCGG 59.539 52.381 0.00 0.00 0.00 6.13
547 556 1.806542 TCGCAAATTGCTGTTCCTCTC 59.193 47.619 16.42 0.00 42.25 3.20
814 824 1.885887 CTGGCGATCCTAGAGAGAAGG 59.114 57.143 0.00 0.00 35.26 3.46
815 825 1.269448 GCTGGCGATCCTAGAGAGAAG 59.731 57.143 0.00 0.00 0.00 2.85
938 948 0.537188 TTGGACGAGGGATTGCTCTC 59.463 55.000 0.00 0.00 38.32 3.20
948 958 2.943033 ACTTGTTCACTTTTGGACGAGG 59.057 45.455 5.48 0.00 44.71 4.63
1018 1031 1.187087 GCGGAGGAGGAAGAAGAAGA 58.813 55.000 0.00 0.00 0.00 2.87
1019 1032 0.176910 GGCGGAGGAGGAAGAAGAAG 59.823 60.000 0.00 0.00 0.00 2.85
1020 1033 1.605058 CGGCGGAGGAGGAAGAAGAA 61.605 60.000 0.00 0.00 0.00 2.52
1130 1143 4.310769 CCTAGCCATCAAGGAGATTAACG 58.689 47.826 0.00 0.00 41.22 3.18
1160 1173 2.856222 AGAAACAGGGCAGAAACAGAG 58.144 47.619 0.00 0.00 0.00 3.35
1178 1191 8.884124 AAAATGTATTCCAAGAATCAGGAAGA 57.116 30.769 11.70 5.74 46.25 2.87
1221 1239 7.327064 AGGATGGAGCAACTGAATATATTCT 57.673 36.000 22.77 4.92 37.67 2.40
1234 1252 3.797353 GGGCCGAGGATGGAGCAA 61.797 66.667 0.00 0.00 0.00 3.91
1237 1255 3.610669 CGAGGGCCGAGGATGGAG 61.611 72.222 0.00 0.00 41.76 3.86
1535 1565 2.617021 GGTAATCTTTTCGGGGTGCAGA 60.617 50.000 0.00 0.00 0.00 4.26
1540 1570 1.562942 GGAGGGTAATCTTTTCGGGGT 59.437 52.381 0.00 0.00 0.00 4.95
1545 1588 7.231925 TGGTAAAAACTGGAGGGTAATCTTTTC 59.768 37.037 0.00 0.00 0.00 2.29
1586 1630 1.825474 AGACACACAGACCGGGATTAG 59.175 52.381 6.32 0.00 0.00 1.73
1684 1728 3.882888 TCTGTCACAGAAAACCATGAACC 59.117 43.478 4.55 0.00 37.57 3.62
1736 1780 1.693627 AACGGCAACCACCAATACAA 58.306 45.000 0.00 0.00 0.00 2.41
1738 1782 2.152830 TGTAACGGCAACCACCAATAC 58.847 47.619 0.00 0.00 0.00 1.89
1752 1805 2.157834 TGCACTACCAACCTGTAACG 57.842 50.000 0.00 0.00 0.00 3.18
1753 1806 3.303526 CGTTTGCACTACCAACCTGTAAC 60.304 47.826 0.00 0.00 0.00 2.50
1825 1878 6.356556 TGTTATGTATGCCTTGCTTATCACT 58.643 36.000 0.00 0.00 0.00 3.41
1849 1902 0.920763 TGAACCAGCCCCCATCTGAT 60.921 55.000 0.00 0.00 33.54 2.90
1861 1914 6.780457 AAAATCTTACCATCCATGAACCAG 57.220 37.500 0.00 0.00 0.00 4.00
1917 1970 5.144100 TCAACAAAAAGGAGCAGGGAAATA 58.856 37.500 0.00 0.00 0.00 1.40
1924 1977 6.029346 ACCATTATCAACAAAAAGGAGCAG 57.971 37.500 0.00 0.00 0.00 4.24
1942 1995 7.933033 ACTGAAACAGCATGAATTTTTACCATT 59.067 29.630 0.00 0.00 39.69 3.16
1956 2009 5.750067 GTCACATTGAAAACTGAAACAGCAT 59.250 36.000 0.00 0.00 34.37 3.79
2108 2161 1.171308 CAGTGAGCTGGAATGTTGGG 58.829 55.000 0.00 0.00 39.01 4.12
2176 2229 1.933853 CTCCGTTTAGCAGGCATGTAC 59.066 52.381 0.00 0.00 0.00 2.90
2367 2420 2.831333 CTAGCATGGTGTCCTCATCAC 58.169 52.381 7.89 0.00 37.52 3.06
2482 2535 2.892425 GCAGAAGTCCCCGATGCG 60.892 66.667 0.00 0.00 0.00 4.73
2506 2559 1.739562 GTGCAGCCTTCTCTCGGTG 60.740 63.158 0.00 0.00 0.00 4.94
2589 2642 1.899814 TCCGAACAGTGACATTAGGCT 59.100 47.619 0.00 0.00 0.00 4.58
3146 3201 0.036732 CTGTCCTGCCTTTGGTGCTA 59.963 55.000 0.00 0.00 0.00 3.49
3205 3260 3.743521 TCAATGGTCTTCTGGTCAACTG 58.256 45.455 0.00 0.00 0.00 3.16
3251 3306 1.962807 TGGCCTTTCACCTGAATGTTG 59.037 47.619 3.32 0.00 33.54 3.33
3281 3336 0.036858 ACTCTTTCTTCTGAGGCGCC 60.037 55.000 21.89 21.89 34.84 6.53
3282 3337 1.355005 GACTCTTTCTTCTGAGGCGC 58.645 55.000 0.00 0.00 34.84 6.53
3284 3339 1.065782 GGGGACTCTTTCTTCTGAGGC 60.066 57.143 0.00 0.00 37.60 4.70
3335 3396 2.004589 AGACTAGGGAGAGACCTTGGT 58.995 52.381 0.00 0.00 41.68 3.67
3380 3441 1.855360 GATGTTCTCCGAGTTCGATGC 59.145 52.381 2.59 0.00 43.02 3.91
3391 3452 4.332268 GCTTGATTGACAGAGATGTTCTCC 59.668 45.833 0.98 0.00 44.42 3.71
3398 3459 5.879223 CAGTTAAGGCTTGATTGACAGAGAT 59.121 40.000 10.69 0.00 0.00 2.75
3464 3525 9.587772 AATGTATGTAAACTAACTCTGCACTAG 57.412 33.333 0.00 0.00 0.00 2.57
3502 3564 7.379059 TTTACAGGTGATGATGGTCTATGAT 57.621 36.000 0.00 0.00 0.00 2.45
3571 3633 4.210724 ACGGTTCCGGATTCTTTATTGA 57.789 40.909 4.15 0.00 0.00 2.57
3644 3706 2.687370 GCGAAATGCCATGACCTTTTT 58.313 42.857 0.00 0.00 37.76 1.94
3645 3707 2.368655 GCGAAATGCCATGACCTTTT 57.631 45.000 0.00 0.00 37.76 2.27
3657 3719 1.656652 AGATGGAAGACGGCGAAATG 58.343 50.000 16.62 0.00 0.00 2.32
3869 3951 1.406539 GGCTAATGCAACATGTCCCTG 59.593 52.381 0.00 0.00 41.91 4.45
3871 3953 1.767759 AGGCTAATGCAACATGTCCC 58.232 50.000 0.00 0.00 41.91 4.46
3926 4008 5.699458 AGGAGCTGAATTTTGCTTTTTCATG 59.301 36.000 0.00 0.00 39.91 3.07
4000 4089 1.340657 GCATCGATCGGAGATCGCAC 61.341 60.000 22.87 13.04 45.12 5.34
4120 4217 4.762289 ATAGACATCCCAAACTGACTCC 57.238 45.455 0.00 0.00 0.00 3.85
4228 4329 1.244816 GCCTTTTTAGGTCAGGCGTT 58.755 50.000 0.00 0.00 43.73 4.84
4232 4333 2.102578 CCCATGCCTTTTTAGGTCAGG 58.897 52.381 0.00 0.00 0.00 3.86
4250 4351 3.866066 GCTTCCATGCCTTTCTTTTTCCC 60.866 47.826 0.00 0.00 0.00 3.97
4251 4352 3.244181 TGCTTCCATGCCTTTCTTTTTCC 60.244 43.478 0.00 0.00 0.00 3.13
4253 4354 4.101430 TCTTGCTTCCATGCCTTTCTTTTT 59.899 37.500 0.00 0.00 0.00 1.94
4254 4355 3.642848 TCTTGCTTCCATGCCTTTCTTTT 59.357 39.130 0.00 0.00 0.00 2.27
4297 4400 2.455557 CTCATCTGACCTCACCTCAGT 58.544 52.381 0.00 0.00 37.12 3.41
4301 4404 1.272928 TGAGCTCATCTGACCTCACCT 60.273 52.381 13.74 0.00 33.25 4.00
4314 4417 1.378119 CAGCAATGCCCTGAGCTCA 60.378 57.895 17.19 17.19 44.23 4.26
4322 4425 1.133790 CTTTACTGCTCAGCAATGCCC 59.866 52.381 0.00 0.00 38.41 5.36
4345 4448 1.035932 ATCATGCAAGCCACCAGAGC 61.036 55.000 0.00 0.00 0.00 4.09
4346 4449 1.471119 AATCATGCAAGCCACCAGAG 58.529 50.000 0.00 0.00 0.00 3.35
4347 4450 1.546923 CAAATCATGCAAGCCACCAGA 59.453 47.619 0.00 0.00 0.00 3.86
4348 4451 2.004583 CAAATCATGCAAGCCACCAG 57.995 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.