Multiple sequence alignment - TraesCS5A01G284700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G284700 chr5A 100.000 8468 0 0 1 8468 492893744 492902211 0.000000e+00 15638
1 TraesCS5A01G284700 chr5D 95.619 5455 164 29 3053 8468 389589787 389595205 0.000000e+00 8680
2 TraesCS5A01G284700 chr5D 92.846 1258 54 10 705 1940 389587691 389588934 0.000000e+00 1792
3 TraesCS5A01G284700 chr5D 93.128 553 30 7 1974 2519 389588933 389589484 0.000000e+00 804
4 TraesCS5A01G284700 chr5D 95.114 307 14 1 2623 2929 389589483 389589788 4.600000e-132 483
5 TraesCS5A01G284700 chr5D 83.667 300 33 6 132 421 389586389 389586682 1.400000e-67 268
6 TraesCS5A01G284700 chr5D 80.788 203 13 13 449 646 389587134 389587315 1.480000e-27 135
7 TraesCS5A01G284700 chr5B 96.141 2669 70 16 3654 6316 469823614 469826255 0.000000e+00 4327
8 TraesCS5A01G284700 chr5B 94.668 1594 67 10 6362 7945 469826611 469828196 0.000000e+00 2457
9 TraesCS5A01G284700 chr5B 95.341 1159 33 7 790 1940 469820831 469821976 0.000000e+00 1821
10 TraesCS5A01G284700 chr5B 95.238 609 25 4 3053 3658 469822776 469823383 0.000000e+00 961
11 TraesCS5A01G284700 chr5B 89.827 462 26 6 8003 8461 469828218 469828661 2.650000e-159 573
12 TraesCS5A01G284700 chr5B 94.366 355 16 2 2169 2519 469822119 469822473 7.480000e-150 542
13 TraesCS5A01G284700 chr5B 95.161 310 14 1 2620 2929 469822469 469822777 9.880000e-134 488
14 TraesCS5A01G284700 chr5B 80.321 498 51 28 132 597 469804747 469805229 4.900000e-87 333
15 TraesCS5A01G284700 chr5B 79.719 498 54 24 132 597 467803828 467803346 4.930000e-82 316
16 TraesCS5A01G284700 chr5B 79.894 378 50 15 3313 3681 702476006 702476366 3.920000e-63 254
17 TraesCS5A01G284700 chr5B 98.473 131 2 0 2928 3058 202239358 202239228 1.840000e-56 231
18 TraesCS5A01G284700 chr5B 95.683 139 4 2 1974 2110 469821975 469822113 1.110000e-53 222
19 TraesCS5A01G284700 chr5B 93.960 149 6 3 2908 3054 560436891 560436744 1.110000e-53 222
20 TraesCS5A01G284700 chr5B 94.318 88 5 0 3 90 469804650 469804737 1.480000e-27 135
21 TraesCS5A01G284700 chr7D 92.991 1013 53 11 4555 5564 565906179 565907176 0.000000e+00 1461
22 TraesCS5A01G284700 chr7D 91.623 764 48 5 3823 4572 565905406 565906167 0.000000e+00 1042
23 TraesCS5A01G284700 chr7D 90.835 491 28 10 3356 3840 565870452 565870931 7.170000e-180 641
24 TraesCS5A01G284700 chr7D 85.872 545 52 16 1223 1761 565744909 565745434 2.670000e-154 556
25 TraesCS5A01G284700 chr7D 95.192 312 15 0 3053 3364 565867636 565867947 2.120000e-135 494
26 TraesCS5A01G284700 chr7D 86.637 449 45 10 1758 2201 565866763 565867201 4.600000e-132 483
27 TraesCS5A01G284700 chr7D 89.032 310 30 2 2623 2929 565867329 565867637 1.720000e-101 381
28 TraesCS5A01G284700 chr7D 95.804 143 5 1 2915 3057 567712442 567712583 6.610000e-56 230
29 TraesCS5A01G284700 chr7D 81.197 234 25 9 2241 2468 565867097 565867317 4.060000e-38 171
30 TraesCS5A01G284700 chr4A 80.801 599 80 19 3052 3635 617365292 617364714 3.630000e-118 436
31 TraesCS5A01G284700 chr4A 96.667 120 3 1 2510 2629 438320710 438320592 1.860000e-46 198
32 TraesCS5A01G284700 chr2B 80.410 536 53 28 132 646 735526381 735526885 2.250000e-95 361
33 TraesCS5A01G284700 chr2B 98.450 129 2 0 2927 3055 199013853 199013725 2.380000e-55 228
34 TraesCS5A01G284700 chr2D 78.154 531 68 24 140 646 605372553 605373059 2.310000e-75 294
35 TraesCS5A01G284700 chr2A 84.512 297 32 8 132 421 736552448 736552737 1.800000e-71 281
36 TraesCS5A01G284700 chr2A 100.000 111 0 0 2514 2624 96153222 96153112 1.110000e-48 206
37 TraesCS5A01G284700 chr2A 97.391 115 3 0 2510 2624 510433596 510433482 6.710000e-46 196
38 TraesCS5A01G284700 chr7B 98.473 131 1 1 2928 3057 470313027 470313157 6.610000e-56 230
39 TraesCS5A01G284700 chr7A 97.744 133 3 0 2923 3055 454048953 454049085 6.610000e-56 230
40 TraesCS5A01G284700 chr4B 96.350 137 5 0 2927 3063 50132879 50133015 8.550000e-55 226
41 TraesCS5A01G284700 chr6B 95.105 143 5 2 2914 3054 160666138 160666280 3.080000e-54 224
42 TraesCS5A01G284700 chr6D 93.333 150 8 1 2919 3066 160470635 160470784 3.980000e-53 220
43 TraesCS5A01G284700 chr4D 98.291 117 2 0 2511 2627 211385324 211385440 1.110000e-48 206
44 TraesCS5A01G284700 chr6A 98.261 115 2 0 2511 2625 250834509 250834623 1.440000e-47 202
45 TraesCS5A01G284700 chr3D 98.261 115 2 0 2514 2628 572127427 572127541 1.440000e-47 202
46 TraesCS5A01G284700 chr3A 94.697 132 3 4 2497 2625 713911021 713911151 1.440000e-47 202
47 TraesCS5A01G284700 chr1D 98.276 116 0 2 2518 2633 247521064 247520951 1.440000e-47 202
48 TraesCS5A01G284700 chr1A 99.107 112 1 0 2514 2625 534536608 534536497 1.440000e-47 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G284700 chr5A 492893744 492902211 8467 False 15638.000 15638 100.000000 1 8468 1 chr5A.!!$F1 8467
1 TraesCS5A01G284700 chr5D 389586389 389595205 8816 False 2027.000 8680 90.193667 132 8468 6 chr5D.!!$F1 8336
2 TraesCS5A01G284700 chr5B 469820831 469828661 7830 False 1423.875 4327 94.553125 790 8461 8 chr5B.!!$F3 7671
3 TraesCS5A01G284700 chr5B 469804650 469805229 579 False 234.000 333 87.319500 3 597 2 chr5B.!!$F2 594
4 TraesCS5A01G284700 chr7D 565905406 565907176 1770 False 1251.500 1461 92.307000 3823 5564 2 chr7D.!!$F4 1741
5 TraesCS5A01G284700 chr7D 565744909 565745434 525 False 556.000 556 85.872000 1223 1761 1 chr7D.!!$F1 538
6 TraesCS5A01G284700 chr7D 565866763 565870931 4168 False 434.000 641 88.578600 1758 3840 5 chr7D.!!$F3 2082
7 TraesCS5A01G284700 chr4A 617364714 617365292 578 True 436.000 436 80.801000 3052 3635 1 chr4A.!!$R2 583
8 TraesCS5A01G284700 chr2B 735526381 735526885 504 False 361.000 361 80.410000 132 646 1 chr2B.!!$F1 514
9 TraesCS5A01G284700 chr2D 605372553 605373059 506 False 294.000 294 78.154000 140 646 1 chr2D.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 995 0.165295 GCTAAACTTTCGTGGTCGGC 59.835 55.000 0.00 0.00 37.69 5.54 F
1075 1866 0.242017 CAAGAAGAAAGGCAAGGGCG 59.758 55.000 0.00 0.00 42.47 6.13 F
2167 2971 0.171007 AATTTTGTCGATGGCCTGCG 59.829 50.000 3.32 8.01 0.00 5.18 F
2942 3754 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 F
2948 3760 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 F
4332 7915 1.011242 CGTTGCACACACCGAACAG 60.011 57.895 0.00 0.00 32.75 3.16 F
4758 8403 1.064906 TGGAGGTTCGTCCGATCTAGT 60.065 52.381 6.98 0.00 39.81 2.57 F
5308 8956 0.317160 TGACGACGATGAGGTTGCTT 59.683 50.000 0.00 0.00 0.00 3.91 F
6627 10587 1.166989 TCAGCGAGCAAATGCATGAA 58.833 45.000 0.00 0.00 45.16 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 2353 0.704664 AACCTTGGACCCAGGAATCC 59.295 55.000 18.49 0.0 35.37 3.01 R
2607 3416 0.251297 TGTTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.0 0.00 4.55 R
3032 3844 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 R
4679 8305 1.133606 TCTGGGGTTTTTGTCCTGTCC 60.134 52.381 0.00 0.0 0.00 4.02 R
4846 8491 9.796180 TGGTAGAATTACAAGCTAAACCTAAAA 57.204 29.630 0.00 0.0 0.00 1.52 R
5274 8922 0.034059 CGTCACTTTGCTCCCAGTCT 59.966 55.000 0.00 0.0 0.00 3.24 R
6046 9694 1.375908 GACAGCATGCCGGAAGTCA 60.376 57.895 15.66 0.0 42.53 3.41 R
7181 11145 1.072331 TGCACCAAAGAGAAGGAGGAC 59.928 52.381 0.00 0.0 0.00 3.85 R
7482 11446 0.249398 ACTGGACCGTGATAGCAACC 59.751 55.000 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.859427 TTCTTTTAATCCTTACATGCAAGAATG 57.141 29.630 7.28 0.00 0.00 2.67
49 50 8.173542 TGCAAGAATGTAATGCATCTCATAAT 57.826 30.769 14.16 6.23 44.52 1.28
63 64 8.206189 TGCATCTCATAATCTAAACAGATGTGA 58.794 33.333 0.00 0.00 39.55 3.58
163 164 7.615365 AGATAGGCTCAACAAACCATAAATGAA 59.385 33.333 0.00 0.00 0.00 2.57
203 204 5.985911 ACCACACACTTATGTTATACTCCC 58.014 41.667 0.00 0.00 36.72 4.30
205 206 6.127140 ACCACACACTTATGTTATACTCCCTC 60.127 42.308 0.00 0.00 36.72 4.30
206 207 6.098409 CCACACACTTATGTTATACTCCCTCT 59.902 42.308 0.00 0.00 36.72 3.69
213 214 4.322080 TGTTATACTCCCTCTGAATGCG 57.678 45.455 0.00 0.00 0.00 4.73
247 248 2.290577 GGGCAGATTGTGGTCTTCTTCT 60.291 50.000 0.00 0.00 0.00 2.85
279 280 7.011669 CCAAATCTGCCCATAATTCAATTTCAC 59.988 37.037 0.00 0.00 0.00 3.18
280 281 7.427989 AATCTGCCCATAATTCAATTTCACT 57.572 32.000 0.00 0.00 0.00 3.41
281 282 6.211587 TCTGCCCATAATTCAATTTCACTG 57.788 37.500 0.00 0.00 0.00 3.66
282 283 4.757594 TGCCCATAATTCAATTTCACTGC 58.242 39.130 0.00 0.00 0.00 4.40
299 300 2.225117 ACTGCCTGCCTAAATCCACTTT 60.225 45.455 0.00 0.00 0.00 2.66
318 319 6.863126 CCACTTTGTATGTTTTGAGTCCATTC 59.137 38.462 0.00 0.00 0.00 2.67
404 425 7.445945 TGTAAAAATCCCCAAACCACTTAATG 58.554 34.615 0.00 0.00 0.00 1.90
421 442 8.413229 CCACTTAATGTAAGTTCCCCATATTTG 58.587 37.037 0.00 0.00 46.27 2.32
426 462 8.608185 AATGTAAGTTCCCCATATTTGTCAAT 57.392 30.769 0.00 0.00 0.00 2.57
434 470 8.912988 GTTCCCCATATTTGTCAATTATCTTGA 58.087 33.333 0.00 0.00 0.00 3.02
512 958 1.494960 AGAAGGAGAGGTCCATCAGC 58.505 55.000 0.00 0.00 46.80 4.26
522 968 1.590932 GTCCATCAGCCAGCATACAG 58.409 55.000 0.00 0.00 0.00 2.74
536 985 2.755103 GCATACAGCCCAGCTAAACTTT 59.245 45.455 0.00 0.00 36.40 2.66
537 986 3.181496 GCATACAGCCCAGCTAAACTTTC 60.181 47.826 0.00 0.00 36.40 2.62
538 987 1.523758 ACAGCCCAGCTAAACTTTCG 58.476 50.000 0.00 0.00 36.40 3.46
539 988 1.202770 ACAGCCCAGCTAAACTTTCGT 60.203 47.619 0.00 0.00 36.40 3.85
543 992 1.804748 CCCAGCTAAACTTTCGTGGTC 59.195 52.381 0.00 0.00 0.00 4.02
546 995 0.165295 GCTAAACTTTCGTGGTCGGC 59.835 55.000 0.00 0.00 37.69 5.54
548 997 0.393820 TAAACTTTCGTGGTCGGCCT 59.606 50.000 7.97 0.00 37.69 5.19
550 999 0.611714 AACTTTCGTGGTCGGCCTAT 59.388 50.000 7.97 0.00 37.69 2.57
563 1012 2.584391 GCCTATCCACCCCCGCTAG 61.584 68.421 0.00 0.00 0.00 3.42
585 1034 2.603021 CCTCTATAGCAGCCAGGAGAA 58.397 52.381 0.00 0.00 0.00 2.87
586 1035 2.562298 CCTCTATAGCAGCCAGGAGAAG 59.438 54.545 0.00 0.00 0.00 2.85
587 1036 3.495331 CTCTATAGCAGCCAGGAGAAGA 58.505 50.000 0.00 0.00 0.00 2.87
595 1044 2.034048 GCCAGGAGAAGACCGATCCC 62.034 65.000 0.00 0.00 33.30 3.85
601 1050 1.486726 GAGAAGACCGATCCCCACATT 59.513 52.381 0.00 0.00 0.00 2.71
608 1057 0.394565 CGATCCCCACATTCCCTCTC 59.605 60.000 0.00 0.00 0.00 3.20
609 1058 0.767998 GATCCCCACATTCCCTCTCC 59.232 60.000 0.00 0.00 0.00 3.71
610 1059 0.699231 ATCCCCACATTCCCTCTCCC 60.699 60.000 0.00 0.00 0.00 4.30
611 1060 2.746375 CCCCACATTCCCTCTCCCG 61.746 68.421 0.00 0.00 0.00 5.14
612 1061 1.995626 CCCACATTCCCTCTCCCGT 60.996 63.158 0.00 0.00 0.00 5.28
613 1062 1.522569 CCACATTCCCTCTCCCGTC 59.477 63.158 0.00 0.00 0.00 4.79
614 1063 0.978146 CCACATTCCCTCTCCCGTCT 60.978 60.000 0.00 0.00 0.00 4.18
615 1064 0.461961 CACATTCCCTCTCCCGTCTC 59.538 60.000 0.00 0.00 0.00 3.36
616 1065 0.336737 ACATTCCCTCTCCCGTCTCT 59.663 55.000 0.00 0.00 0.00 3.10
617 1066 1.036707 CATTCCCTCTCCCGTCTCTC 58.963 60.000 0.00 0.00 0.00 3.20
706 1194 3.647771 ACCGCCCAAACCTCCTCC 61.648 66.667 0.00 0.00 0.00 4.30
710 1476 1.000771 GCCCAAACCTCCTCCTTCC 60.001 63.158 0.00 0.00 0.00 3.46
725 1491 2.771763 CTTCCTGCTCGTTCGGTGCT 62.772 60.000 10.70 0.00 36.15 4.40
726 1492 2.765250 TTCCTGCTCGTTCGGTGCTC 62.765 60.000 10.70 0.00 36.15 4.26
736 1502 0.391597 TTCGGTGCTCTTCTTTCGGT 59.608 50.000 0.00 0.00 0.00 4.69
832 1618 1.339291 GCAATAAGAGGCCCATCTTGC 59.661 52.381 15.72 13.05 39.81 4.01
851 1637 1.693103 AGCCCAGGCCTAGGTTACC 60.693 63.158 19.24 2.92 43.17 2.85
1019 1807 2.202756 GGCGAAGACGAAGCCGAT 60.203 61.111 0.00 0.00 41.53 4.18
1053 1841 3.793144 GCGGCGGACAAGAAGCAG 61.793 66.667 9.78 0.00 0.00 4.24
1056 1844 1.869690 GGCGGACAAGAAGCAGAAC 59.130 57.895 0.00 0.00 0.00 3.01
1059 1847 1.069636 GCGGACAAGAAGCAGAACAAG 60.070 52.381 0.00 0.00 0.00 3.16
1073 1864 3.005155 CAGAACAAGAAGAAAGGCAAGGG 59.995 47.826 0.00 0.00 0.00 3.95
1074 1865 1.332195 ACAAGAAGAAAGGCAAGGGC 58.668 50.000 0.00 0.00 40.13 5.19
1075 1866 0.242017 CAAGAAGAAAGGCAAGGGCG 59.758 55.000 0.00 0.00 42.47 6.13
1083 1874 4.440127 GGCAAGGGCGGCAACATG 62.440 66.667 12.47 4.72 42.47 3.21
1273 2064 2.795329 CCATCCACAAGGTAAGTGCTT 58.205 47.619 0.00 0.00 35.69 3.91
1274 2065 2.489329 CCATCCACAAGGTAAGTGCTTG 59.511 50.000 0.00 0.00 35.69 4.01
1275 2066 1.604604 TCCACAAGGTAAGTGCTTGC 58.395 50.000 0.00 0.00 35.69 4.01
1276 2067 1.142870 TCCACAAGGTAAGTGCTTGCT 59.857 47.619 0.00 0.00 35.69 3.91
1332 2126 2.636830 CTCGATTCTTTGGCCTGATGT 58.363 47.619 3.32 0.00 0.00 3.06
1410 2207 0.666577 CCAAGTCGTCGGTCTTCCAC 60.667 60.000 0.00 0.00 0.00 4.02
1556 2353 4.201891 GCAGCATTCTCTAGTCAACAATGG 60.202 45.833 0.00 0.00 0.00 3.16
1651 2448 9.744468 GTTCTTGTTGTGTTATAGGAACAAATT 57.256 29.630 0.00 0.00 37.73 1.82
1679 2476 3.647636 TGTTTTGTCCCCTTCATTTCCA 58.352 40.909 0.00 0.00 0.00 3.53
1782 2582 3.465966 AGGAGTTTGTTAAGTTTCCCCCT 59.534 43.478 0.00 0.00 0.00 4.79
1814 2614 2.074547 TCTAGGCGAAGTTGAAACGG 57.925 50.000 0.00 0.00 0.00 4.44
1960 2760 5.841810 AGCTCTCATCTAAGTATCTTGCAC 58.158 41.667 0.00 0.00 0.00 4.57
1976 2779 6.648879 TCTTGCACTATATTTAATTGGCCC 57.351 37.500 0.00 0.00 0.00 5.80
1996 2799 1.879380 CATGTTTTCTGCTTCGTGGGA 59.121 47.619 0.00 0.00 0.00 4.37
2167 2971 0.171007 AATTTTGTCGATGGCCTGCG 59.829 50.000 3.32 8.01 0.00 5.18
2175 2979 0.729140 CGATGGCCTGCGAAACAAAC 60.729 55.000 11.63 0.00 0.00 2.93
2285 3093 7.844009 AGATGTATGCTGTCAATCCAAAATTT 58.156 30.769 0.00 0.00 0.00 1.82
2437 3245 7.953005 TTCTATTTATTCTGTGGGATGCAAA 57.047 32.000 0.00 0.00 0.00 3.68
2471 3280 5.245531 TCATACAGGTGTTGGAATTGTCTC 58.754 41.667 0.00 0.00 0.00 3.36
2488 3297 5.568685 TGTCTCGAATTTAGGTCTCTGAG 57.431 43.478 0.00 0.00 0.00 3.35
2515 3324 4.647424 AAGAATTTCTTGACGTTGGCAA 57.353 36.364 10.82 0.00 34.98 4.52
2516 3325 4.647424 AGAATTTCTTGACGTTGGCAAA 57.353 36.364 0.00 0.00 0.00 3.68
2517 3326 5.200368 AGAATTTCTTGACGTTGGCAAAT 57.800 34.783 0.00 0.00 0.00 2.32
2518 3327 6.325919 AGAATTTCTTGACGTTGGCAAATA 57.674 33.333 0.00 0.00 0.00 1.40
2519 3328 6.149633 AGAATTTCTTGACGTTGGCAAATAC 58.850 36.000 0.00 0.00 0.00 1.89
2520 3329 5.705609 ATTTCTTGACGTTGGCAAATACT 57.294 34.783 0.00 0.00 0.00 2.12
2521 3330 4.742438 TTCTTGACGTTGGCAAATACTC 57.258 40.909 0.00 0.00 0.00 2.59
2522 3331 3.071479 TCTTGACGTTGGCAAATACTCC 58.929 45.455 0.00 0.00 0.00 3.85
2523 3332 1.816074 TGACGTTGGCAAATACTCCC 58.184 50.000 0.00 0.00 0.00 4.30
2524 3333 1.349688 TGACGTTGGCAAATACTCCCT 59.650 47.619 0.00 0.00 0.00 4.20
2525 3334 2.007608 GACGTTGGCAAATACTCCCTC 58.992 52.381 0.00 0.00 0.00 4.30
2526 3335 1.339727 ACGTTGGCAAATACTCCCTCC 60.340 52.381 0.00 0.00 0.00 4.30
2527 3336 1.379527 GTTGGCAAATACTCCCTCCG 58.620 55.000 0.00 0.00 0.00 4.63
2528 3337 0.988832 TTGGCAAATACTCCCTCCGT 59.011 50.000 0.00 0.00 0.00 4.69
2529 3338 0.988832 TGGCAAATACTCCCTCCGTT 59.011 50.000 0.00 0.00 0.00 4.44
2530 3339 1.065709 TGGCAAATACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2531 3340 1.664873 GCAAATACTCCCTCCGTTCC 58.335 55.000 0.00 0.00 0.00 3.62
2532 3341 1.065709 GCAAATACTCCCTCCGTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
2533 3342 2.617021 GCAAATACTCCCTCCGTTCCAA 60.617 50.000 0.00 0.00 0.00 3.53
2534 3343 3.681593 CAAATACTCCCTCCGTTCCAAA 58.318 45.455 0.00 0.00 0.00 3.28
2535 3344 4.270008 CAAATACTCCCTCCGTTCCAAAT 58.730 43.478 0.00 0.00 0.00 2.32
2536 3345 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2537 3346 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2538 3347 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2539 3348 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2540 3349 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2541 3350 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2542 3351 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2543 3352 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2544 3353 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2545 3354 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2546 3355 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2547 3356 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2548 3357 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2549 3358 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2550 3359 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2551 3360 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2552 3361 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2553 3362 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2554 3363 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2555 3364 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2556 3365 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2557 3366 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2558 3367 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2559 3368 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2560 3369 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2561 3370 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2562 3371 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2563 3372 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2564 3373 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2565 3374 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2566 3375 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2567 3376 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2568 3377 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2569 3378 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2570 3379 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2596 3405 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2597 3406 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
2598 3407 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
2599 3408 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2600 3409 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2601 3410 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2602 3411 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2603 3412 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2604 3413 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2605 3414 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2606 3415 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2607 3416 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2608 3417 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2609 3418 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
2610 3419 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
2611 3420 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2612 3421 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
2613 3422 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
2692 3504 0.843984 ATAATCTGGGACGGGGTTGG 59.156 55.000 0.00 0.00 33.92 3.77
2897 3709 2.010043 GCGTTGGGAATGTACGATGGT 61.010 52.381 0.00 0.00 0.00 3.55
2904 3716 5.120399 TGGGAATGTACGATGGTTGTTATC 58.880 41.667 0.00 0.00 0.00 1.75
2937 3749 9.720769 ATTATTTATGTTAACATACTCCCTCCG 57.279 33.333 24.60 0.00 38.44 4.63
2938 3750 6.549433 TTTATGTTAACATACTCCCTCCGT 57.451 37.500 24.60 1.86 38.44 4.69
2939 3751 4.667519 ATGTTAACATACTCCCTCCGTC 57.332 45.455 19.51 0.00 34.26 4.79
2940 3752 2.762327 TGTTAACATACTCCCTCCGTCC 59.238 50.000 3.59 0.00 0.00 4.79
2941 3753 2.077687 TAACATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
2942 3754 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2943 3755 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2944 3756 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2945 3757 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2946 3758 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2947 3759 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2948 3760 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2949 3761 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2950 3762 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2951 3763 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2952 3764 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2953 3765 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2954 3766 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2955 3767 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2956 3768 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2957 3769 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2958 3770 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2959 3771 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2960 3772 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2961 3773 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2962 3774 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2963 3775 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2964 3776 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2965 3777 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2973 3785 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
2974 3786 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2975 3787 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2976 3788 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2977 3789 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2978 3790 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3009 3821 9.745880 ACACTAAAATGTAACTAGATACATCCG 57.254 33.333 21.77 14.02 43.83 4.18
3010 3822 9.745880 CACTAAAATGTAACTAGATACATCCGT 57.254 33.333 21.77 14.49 43.83 4.69
3041 3853 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
3042 3854 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
3043 3855 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3044 3856 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3045 3857 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3046 3858 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3047 3859 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3048 3860 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3049 3861 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3050 3862 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3060 3872 3.036819 GGGACGGAGGGAGTATTAAAGT 58.963 50.000 0.00 0.00 0.00 2.66
3299 4120 6.088749 CGATATGCTGTGTGCTTAATCTAGTC 59.911 42.308 0.00 0.00 43.37 2.59
3393 6727 1.067071 GGTAGAGTGCCCTGTGTGTAC 60.067 57.143 0.00 0.00 0.00 2.90
3536 6878 6.785488 TGGTTCGATACATGATGCTTATTC 57.215 37.500 0.00 0.00 0.00 1.75
3540 6882 5.852827 TCGATACATGATGCTTATTCCACA 58.147 37.500 0.00 0.00 0.00 4.17
3604 6946 5.070313 TGCAAAGGTAATCAAAAGAAGCCTT 59.930 36.000 0.00 0.00 36.53 4.35
3712 7295 6.235231 TGTGAGGGATTAGATAAACAGGAC 57.765 41.667 0.00 0.00 0.00 3.85
3872 7455 6.126796 TGACCTCATTAGATTGGTATTGCAGA 60.127 38.462 0.00 0.00 32.30 4.26
4018 7601 3.876914 CCAAAAAGCCAAGGAAAAGGAAC 59.123 43.478 0.00 0.00 0.00 3.62
4098 7681 1.480954 GCACTTCTATCCCTGACCGAA 59.519 52.381 0.00 0.00 0.00 4.30
4316 7899 6.157211 CCTCTGTTATGTTGTTAGAAGTCGT 58.843 40.000 0.00 0.00 0.00 4.34
4332 7915 1.011242 CGTTGCACACACCGAACAG 60.011 57.895 0.00 0.00 32.75 3.16
4564 8190 5.068460 GTGCATGGGCCTGTAAATATGTTAA 59.932 40.000 4.53 0.00 40.13 2.01
4625 8251 1.203287 GCATTCCAGGAAAAGCCAGAC 59.797 52.381 15.85 0.00 40.02 3.51
4756 8401 1.747355 GTTGGAGGTTCGTCCGATCTA 59.253 52.381 5.02 0.00 39.81 1.98
4757 8402 1.676746 TGGAGGTTCGTCCGATCTAG 58.323 55.000 6.98 0.00 39.81 2.43
4758 8403 1.064906 TGGAGGTTCGTCCGATCTAGT 60.065 52.381 6.98 0.00 39.81 2.57
4759 8404 2.022934 GGAGGTTCGTCCGATCTAGTT 58.977 52.381 0.00 0.00 41.99 2.24
4760 8405 2.223525 GGAGGTTCGTCCGATCTAGTTG 60.224 54.545 0.00 0.00 41.99 3.16
4761 8406 1.134560 AGGTTCGTCCGATCTAGTTGC 59.865 52.381 0.00 0.00 41.99 4.17
4762 8407 1.135199 GGTTCGTCCGATCTAGTTGCA 60.135 52.381 0.00 0.00 0.00 4.08
4763 8408 2.481449 GGTTCGTCCGATCTAGTTGCAT 60.481 50.000 0.00 0.00 0.00 3.96
4764 8409 3.187700 GTTCGTCCGATCTAGTTGCATT 58.812 45.455 0.00 0.00 0.00 3.56
4765 8410 2.809446 TCGTCCGATCTAGTTGCATTG 58.191 47.619 0.00 0.00 0.00 2.82
4766 8411 1.860950 CGTCCGATCTAGTTGCATTGG 59.139 52.381 0.00 0.00 0.00 3.16
4767 8412 2.481276 CGTCCGATCTAGTTGCATTGGA 60.481 50.000 0.00 0.00 31.00 3.53
4768 8413 3.733337 GTCCGATCTAGTTGCATTGGAT 58.267 45.455 2.29 0.00 35.40 3.41
4769 8414 3.496130 GTCCGATCTAGTTGCATTGGATG 59.504 47.826 2.90 0.00 35.40 3.51
4844 8489 7.015226 TGTTTTTGTGAACTCTAGTGTGATG 57.985 36.000 0.00 0.00 0.00 3.07
4845 8490 6.821160 TGTTTTTGTGAACTCTAGTGTGATGA 59.179 34.615 0.00 0.00 0.00 2.92
4846 8491 7.498900 TGTTTTTGTGAACTCTAGTGTGATGAT 59.501 33.333 0.00 0.00 0.00 2.45
4861 8506 7.820648 AGTGTGATGATTTTAGGTTTAGCTTG 58.179 34.615 0.00 0.00 0.00 4.01
5199 8844 3.393089 AGTGATGACAGTGGTGAAGAC 57.607 47.619 0.00 0.00 0.00 3.01
5274 8922 0.753867 TCCGTAATATGCCGGCAAGA 59.246 50.000 36.33 25.15 43.87 3.02
5308 8956 0.317160 TGACGACGATGAGGTTGCTT 59.683 50.000 0.00 0.00 0.00 3.91
5358 9006 7.692705 GTCAAAGATAAAGAACAAGTTATCGGC 59.307 37.037 0.00 0.00 40.26 5.54
5389 9037 9.934190 AAGTTATGAAAACAAATGCACAAAATC 57.066 25.926 0.00 0.00 0.00 2.17
5482 9130 9.515226 AAGCACCAAATAACTTACAAGATCTAA 57.485 29.630 0.00 0.00 0.00 2.10
5562 9210 5.183140 ACGTACTTGCAATTCAATAAGGCTT 59.817 36.000 4.58 4.58 33.57 4.35
5898 9546 1.439543 AGTTCCAGGTTTCTGAGGCT 58.560 50.000 0.00 0.00 43.49 4.58
5966 9614 6.016777 GCCATCCTTATTATGTGGTCTCTTTG 60.017 42.308 0.00 0.00 32.56 2.77
6046 9694 4.164204 GGTCTCTTATATTCCCCTGCTCT 58.836 47.826 0.00 0.00 0.00 4.09
6091 9739 3.689347 TCCAATGCTTCTGCTTATGTGT 58.311 40.909 0.00 0.00 40.48 3.72
6278 9926 8.827177 ATTAGCATGAATAATTTGAATGGCAG 57.173 30.769 0.00 0.00 0.00 4.85
6306 9954 6.870439 GCCAATTAGCTGAATTTCTTCTGTTT 59.130 34.615 0.00 0.00 35.45 2.83
6309 9957 9.125906 CAATTAGCTGAATTTCTTCTGTTTCTG 57.874 33.333 0.00 0.00 35.45 3.02
6490 10450 5.582665 GGAGAAGTTAGCAATCAGGTAAGTG 59.417 44.000 0.00 0.00 41.66 3.16
6505 10465 5.995282 CAGGTAAGTGTGAATCCAGTTGTTA 59.005 40.000 3.22 0.00 30.80 2.41
6612 10572 3.633525 TGAAACCATGGCTTCATATCAGC 59.366 43.478 23.67 0.00 36.45 4.26
6619 10579 1.942657 GGCTTCATATCAGCGAGCAAA 59.057 47.619 0.00 0.00 38.24 3.68
6627 10587 1.166989 TCAGCGAGCAAATGCATGAA 58.833 45.000 0.00 0.00 45.16 2.57
6648 10608 9.212641 CATGAAGTGAATCGTATGAATATCCTT 57.787 33.333 0.00 0.00 0.00 3.36
6684 10644 3.533068 TGGATCCTGATTCCCCATTCTTT 59.467 43.478 14.23 0.00 0.00 2.52
6690 10650 3.958798 CTGATTCCCCATTCTTTGCATCT 59.041 43.478 0.00 0.00 0.00 2.90
6863 10823 7.447238 GGCTTTGTAATTATACATGAAGGGCTA 59.553 37.037 0.00 0.00 41.51 3.93
6899 10859 6.146673 CAGAAATTTTCATGCCAGTTTCTTCC 59.853 38.462 11.53 0.00 34.67 3.46
6944 10904 2.620112 CGAGTTGCCTGCCCTGTTG 61.620 63.158 0.00 0.00 0.00 3.33
6965 10925 7.495901 TGTTGCAAGAAATTTTCCAAGATGTA 58.504 30.769 0.00 0.00 0.00 2.29
7104 11064 8.204836 AGTATGTATACTTGTCATTCCCTGTTC 58.795 37.037 4.17 0.00 40.54 3.18
7136 11097 4.765273 TGTCTCTGTTGTGCTCTGTTTTA 58.235 39.130 0.00 0.00 0.00 1.52
7181 11145 6.363577 AGGTCTAATTATGCATTTCACACG 57.636 37.500 3.54 0.00 0.00 4.49
7186 11150 4.882671 ATTATGCATTTCACACGTCCTC 57.117 40.909 3.54 0.00 0.00 3.71
7224 11188 6.537660 GCAGTTACGTAAAGGGTCTTGATTAT 59.462 38.462 10.11 0.00 0.00 1.28
7338 11302 4.157289 AGTTATTTCATGGCTGCTGTGAAG 59.843 41.667 15.70 0.00 33.82 3.02
7351 11315 2.813907 CTGTGAAGGAGAAGGAGAGGA 58.186 52.381 0.00 0.00 0.00 3.71
7352 11316 3.373830 CTGTGAAGGAGAAGGAGAGGAT 58.626 50.000 0.00 0.00 0.00 3.24
7355 11319 3.772025 GTGAAGGAGAAGGAGAGGATGAA 59.228 47.826 0.00 0.00 0.00 2.57
7482 11446 4.505808 GGAGGTGATGATATGCTGATCAG 58.494 47.826 18.84 18.84 39.18 2.90
7494 11458 1.863454 GCTGATCAGGTTGCTATCACG 59.137 52.381 23.89 0.00 0.00 4.35
7587 11553 0.675083 TGCCTTTGCCACTTCATGTG 59.325 50.000 0.00 0.00 45.80 3.21
7621 11588 6.092944 ACCGAAACGAGTAATCATATGCAAAA 59.907 34.615 0.00 0.00 0.00 2.44
7720 11687 3.576118 AGTAATCTGATGTAGCGCAGGAT 59.424 43.478 11.47 0.00 33.05 3.24
7721 11688 2.452295 ATCTGATGTAGCGCAGGATG 57.548 50.000 11.47 0.00 40.87 3.51
7722 11689 1.114627 TCTGATGTAGCGCAGGATGT 58.885 50.000 11.47 0.00 39.31 3.06
7917 11892 3.402110 CCCTTTTTGGCATGGTTTTCTC 58.598 45.455 0.00 0.00 0.00 2.87
7940 11915 4.353777 TCTCTCTAAACCCTGTAGCATGT 58.646 43.478 0.00 0.00 0.00 3.21
7993 11968 6.942005 CCACCATGCAAATTACATCTCCTATA 59.058 38.462 0.00 0.00 0.00 1.31
8004 11979 7.618019 TTACATCTCCTATAGCATTTGGTCT 57.382 36.000 0.00 0.00 0.00 3.85
8044 12033 1.265365 GAGCAGCTTCAAGTTGTCACC 59.735 52.381 2.92 0.00 0.00 4.02
8045 12034 1.024271 GCAGCTTCAAGTTGTCACCA 58.976 50.000 2.92 0.00 0.00 4.17
8046 12035 1.610522 GCAGCTTCAAGTTGTCACCAT 59.389 47.619 2.92 0.00 0.00 3.55
8056 12045 5.245977 TCAAGTTGTCACCATCATCTCACTA 59.754 40.000 2.11 0.00 0.00 2.74
8086 12075 2.358737 ACTAAGCCTGTGCGTGCC 60.359 61.111 0.00 0.00 44.33 5.01
8139 12128 2.004583 CAAATCATGCAAGCCACCAG 57.995 50.000 0.00 0.00 0.00 4.00
8140 12129 1.546923 CAAATCATGCAAGCCACCAGA 59.453 47.619 0.00 0.00 0.00 3.86
8141 12130 1.471119 AATCATGCAAGCCACCAGAG 58.529 50.000 0.00 0.00 0.00 3.35
8142 12131 1.035932 ATCATGCAAGCCACCAGAGC 61.036 55.000 0.00 0.00 0.00 4.09
8165 12154 1.133790 CTTTACTGCTCAGCAATGCCC 59.866 52.381 0.00 0.00 38.41 5.36
8173 12162 1.378119 CAGCAATGCCCTGAGCTCA 60.378 57.895 17.19 17.19 44.23 4.26
8186 12175 1.272928 TGAGCTCATCTGACCTCACCT 60.273 52.381 13.74 0.00 33.25 4.00
8190 12179 2.455557 CTCATCTGACCTCACCTCAGT 58.544 52.381 0.00 0.00 37.12 3.41
8230 12219 2.165998 GTCTTGCTTCCATGCCTTTCT 58.834 47.619 0.00 0.00 0.00 2.52
8255 12246 2.102578 CCCATGCCTTTTTAGGTCAGG 58.897 52.381 0.00 0.00 0.00 3.86
8259 12250 1.244816 GCCTTTTTAGGTCAGGCGTT 58.755 50.000 0.00 0.00 43.73 4.84
8367 12365 4.762289 ATAGACATCCCAAACTGACTCC 57.238 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.474920 TTGCATGTAAGGATTAAAAGAAAACTG 57.525 29.630 0.00 0.00 28.70 3.16
163 164 8.005388 AGTGTGTGGTATAATACATACTCTCCT 58.995 37.037 11.71 0.00 42.98 3.69
183 184 6.895756 TCAGAGGGAGTATAACATAAGTGTGT 59.104 38.462 0.00 0.00 38.92 3.72
203 204 4.161333 GGTGATTCAAAACGCATTCAGAG 58.839 43.478 0.00 0.00 0.00 3.35
205 206 2.910482 CGGTGATTCAAAACGCATTCAG 59.090 45.455 0.00 0.00 0.00 3.02
206 207 2.351253 CCGGTGATTCAAAACGCATTCA 60.351 45.455 0.00 0.00 0.00 2.57
213 214 1.243902 TCTGCCCGGTGATTCAAAAC 58.756 50.000 0.00 0.00 0.00 2.43
247 248 6.894654 TGAATTATGGGCAGATTTGGAAACTA 59.105 34.615 0.00 0.00 0.00 2.24
279 280 2.134789 AAGTGGATTTAGGCAGGCAG 57.865 50.000 0.00 0.00 0.00 4.85
280 281 2.170166 CAAAGTGGATTTAGGCAGGCA 58.830 47.619 0.00 0.00 0.00 4.75
281 282 2.171003 ACAAAGTGGATTTAGGCAGGC 58.829 47.619 0.00 0.00 0.00 4.85
282 283 4.949856 ACATACAAAGTGGATTTAGGCAGG 59.050 41.667 0.00 0.00 0.00 4.85
299 300 4.006989 CCCGAATGGACTCAAAACATACA 58.993 43.478 0.00 0.00 37.49 2.29
318 319 3.804786 AACCTAACAAAACCAAACCCG 57.195 42.857 0.00 0.00 0.00 5.28
365 367 8.908903 GGGGATTTTTACAAACTTCCAAATTTT 58.091 29.630 0.00 0.00 0.00 1.82
366 368 8.055790 TGGGGATTTTTACAAACTTCCAAATTT 58.944 29.630 0.00 0.00 0.00 1.82
372 385 6.854496 GTTTGGGGATTTTTACAAACTTCC 57.146 37.500 10.77 0.00 45.46 3.46
490 935 2.836981 CTGATGGACCTCTCCTTCTTGT 59.163 50.000 0.00 0.00 40.16 3.16
498 943 1.145819 GCTGGCTGATGGACCTCTC 59.854 63.158 0.00 0.00 0.00 3.20
512 958 0.181114 TTAGCTGGGCTGTATGCTGG 59.819 55.000 0.00 0.00 40.10 4.85
522 968 0.521735 CCACGAAAGTTTAGCTGGGC 59.478 55.000 0.00 0.00 46.40 5.36
536 985 2.043752 TGGATAGGCCGACCACGA 60.044 61.111 13.09 0.00 42.66 4.35
537 986 2.106332 GTGGATAGGCCGACCACG 59.894 66.667 24.75 0.00 43.21 4.94
539 988 2.766651 GGGTGGATAGGCCGACCA 60.767 66.667 13.09 13.09 38.70 4.02
546 995 2.584391 GCTAGCGGGGGTGGATAGG 61.584 68.421 0.00 0.00 0.00 2.57
548 997 2.525877 GGCTAGCGGGGGTGGATA 60.526 66.667 9.00 0.00 0.00 2.59
560 1009 1.824230 CTGGCTGCTATAGAGGGCTAG 59.176 57.143 3.21 7.36 0.00 3.42
563 1012 0.833834 TCCTGGCTGCTATAGAGGGC 60.834 60.000 3.21 7.86 0.00 5.19
566 1015 3.255642 GTCTTCTCCTGGCTGCTATAGAG 59.744 52.174 3.21 3.29 0.00 2.43
567 1016 3.226777 GTCTTCTCCTGGCTGCTATAGA 58.773 50.000 3.21 0.00 0.00 1.98
585 1034 1.345715 GGGAATGTGGGGATCGGTCT 61.346 60.000 0.00 0.00 0.00 3.85
586 1035 1.148498 GGGAATGTGGGGATCGGTC 59.852 63.158 0.00 0.00 0.00 4.79
587 1036 1.307866 AGGGAATGTGGGGATCGGT 60.308 57.895 0.00 0.00 0.00 4.69
595 1044 0.978146 AGACGGGAGAGGGAATGTGG 60.978 60.000 0.00 0.00 0.00 4.17
601 1050 1.619975 AGGAGAGACGGGAGAGGGA 60.620 63.158 0.00 0.00 0.00 4.20
608 1057 0.812412 GAGAGACGAGGAGAGACGGG 60.812 65.000 0.00 0.00 0.00 5.28
609 1058 0.812412 GGAGAGACGAGGAGAGACGG 60.812 65.000 0.00 0.00 0.00 4.79
610 1059 0.812412 GGGAGAGACGAGGAGAGACG 60.812 65.000 0.00 0.00 0.00 4.18
611 1060 0.544697 AGGGAGAGACGAGGAGAGAC 59.455 60.000 0.00 0.00 0.00 3.36
612 1061 0.834612 GAGGGAGAGACGAGGAGAGA 59.165 60.000 0.00 0.00 0.00 3.10
613 1062 0.179029 GGAGGGAGAGACGAGGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
614 1063 0.914902 TGGAGGGAGAGACGAGGAGA 60.915 60.000 0.00 0.00 0.00 3.71
615 1064 0.465460 CTGGAGGGAGAGACGAGGAG 60.465 65.000 0.00 0.00 0.00 3.69
616 1065 1.610327 CTGGAGGGAGAGACGAGGA 59.390 63.158 0.00 0.00 0.00 3.71
617 1066 2.124693 GCTGGAGGGAGAGACGAGG 61.125 68.421 0.00 0.00 0.00 4.63
689 1177 3.647771 GGAGGAGGTTTGGGCGGT 61.648 66.667 0.00 0.00 0.00 5.68
706 1194 2.383527 GCACCGAACGAGCAGGAAG 61.384 63.158 0.00 0.00 0.00 3.46
710 1476 1.347817 GAAGAGCACCGAACGAGCAG 61.348 60.000 12.15 0.00 0.00 4.24
725 1491 1.546476 GGAGCAGAGACCGAAAGAAGA 59.454 52.381 0.00 0.00 0.00 2.87
726 1492 1.404851 GGGAGCAGAGACCGAAAGAAG 60.405 57.143 0.00 0.00 0.00 2.85
736 1502 4.713792 AAAAGAAAAGAGGGAGCAGAGA 57.286 40.909 0.00 0.00 0.00 3.10
761 1527 1.912371 GCAGAGGCCGGTTTTTCTCG 61.912 60.000 1.90 1.89 0.00 4.04
764 1530 1.587043 GGAGCAGAGGCCGGTTTTTC 61.587 60.000 1.90 0.00 42.56 2.29
832 1618 1.527370 GTAACCTAGGCCTGGGCTG 59.473 63.158 33.73 18.35 39.30 4.85
1053 1841 2.288457 GCCCTTGCCTTTCTTCTTGTTC 60.288 50.000 0.00 0.00 0.00 3.18
1056 1844 0.242017 CGCCCTTGCCTTTCTTCTTG 59.758 55.000 0.00 0.00 0.00 3.02
1059 1847 2.994671 GCCGCCCTTGCCTTTCTTC 61.995 63.158 0.00 0.00 0.00 2.87
1073 1864 2.361104 TCCCCTTCATGTTGCCGC 60.361 61.111 0.00 0.00 0.00 6.53
1074 1865 1.750399 CCTCCCCTTCATGTTGCCG 60.750 63.158 0.00 0.00 0.00 5.69
1075 1866 0.039618 TTCCTCCCCTTCATGTTGCC 59.960 55.000 0.00 0.00 0.00 4.52
1083 1874 4.111053 GGGCCGTTCCTCCCCTTC 62.111 72.222 0.00 0.00 36.50 3.46
1273 2064 2.758423 TCGGTCTATTAGCAGTTCAGCA 59.242 45.455 0.00 0.00 36.85 4.41
1274 2065 3.376540 CTCGGTCTATTAGCAGTTCAGC 58.623 50.000 0.00 0.00 0.00 4.26
1275 2066 3.376540 GCTCGGTCTATTAGCAGTTCAG 58.623 50.000 0.00 0.00 36.26 3.02
1276 2067 2.223502 CGCTCGGTCTATTAGCAGTTCA 60.224 50.000 0.00 0.00 35.98 3.18
1344 2138 0.108585 TGTTCTCCCTCTGCAACCAC 59.891 55.000 0.00 0.00 0.00 4.16
1556 2353 0.704664 AACCTTGGACCCAGGAATCC 59.295 55.000 18.49 0.00 35.37 3.01
1651 2448 4.155709 TGAAGGGGACAAAACATGCATAA 58.844 39.130 0.00 0.00 0.00 1.90
1679 2476 2.365293 TGCGTGGCACATACTGATAGAT 59.635 45.455 19.09 0.00 44.52 1.98
1761 2561 3.840991 AGGGGGAAACTTAACAAACTCC 58.159 45.455 0.00 0.00 0.00 3.85
1782 2582 6.173339 ACTTCGCCTAGAAATCATGAGAAAA 58.827 36.000 0.09 0.00 38.57 2.29
1814 2614 3.256558 GGACAGATTGAATTTGCTTGCC 58.743 45.455 0.00 0.00 0.00 4.52
1956 2756 5.837979 ACATGGGCCAATTAAATATAGTGCA 59.162 36.000 11.89 0.00 0.00 4.57
1960 2760 9.480053 CAGAAAACATGGGCCAATTAAATATAG 57.520 33.333 11.89 0.00 0.00 1.31
1970 2773 1.344114 GAAGCAGAAAACATGGGCCAA 59.656 47.619 11.89 0.00 0.00 4.52
1976 2779 1.879380 TCCCACGAAGCAGAAAACATG 59.121 47.619 0.00 0.00 0.00 3.21
1996 2799 6.665680 ACATAACACAGGAGACTCAGAAGTAT 59.334 38.462 4.53 0.00 40.21 2.12
2110 2913 9.290282 TGGATGGACAACATATATCCCAATATA 57.710 33.333 0.00 0.00 40.72 0.86
2115 2918 5.921153 TTGGATGGACAACATATATCCCA 57.079 39.130 0.00 0.00 40.72 4.37
2116 2919 7.781324 ATTTTGGATGGACAACATATATCCC 57.219 36.000 0.00 0.00 40.72 3.85
2146 2950 2.262211 GCAGGCCATCGACAAAATTTC 58.738 47.619 5.01 0.00 0.00 2.17
2167 2971 5.869344 AGCAGAACTTCAAAAGGTTTGTTTC 59.131 36.000 0.98 3.58 0.00 2.78
2175 2979 3.065371 ACGACAAGCAGAACTTCAAAAGG 59.935 43.478 0.00 0.00 36.04 3.11
2305 3113 6.071051 AGCAGAACTCCAAAAGGTTTGTTTTA 60.071 34.615 0.47 0.00 0.00 1.52
2427 3235 1.468985 CCCGTAACATTTGCATCCCA 58.531 50.000 0.00 0.00 0.00 4.37
2437 3245 2.116238 ACCTGTATGAGCCCGTAACAT 58.884 47.619 0.00 0.00 0.00 2.71
2471 3280 3.619038 GCCAACTCAGAGACCTAAATTCG 59.381 47.826 3.79 0.00 0.00 3.34
2514 3323 4.586306 ATTTGGAACGGAGGGAGTATTT 57.414 40.909 0.00 0.00 0.00 1.40
2515 3324 4.586306 AATTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2516 3325 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
2517 3326 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2518 3327 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2519 3328 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2520 3329 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2521 3330 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2522 3331 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2523 3332 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2524 3333 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2525 3334 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2526 3335 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2527 3336 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2528 3337 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2529 3338 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2530 3339 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2531 3340 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2532 3341 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2533 3342 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2534 3343 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2535 3344 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2536 3345 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2537 3346 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2538 3347 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2539 3348 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2540 3349 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2541 3350 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2542 3351 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2543 3352 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2544 3353 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2570 3379 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2571 3380 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2572 3381 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2573 3382 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2574 3383 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2575 3384 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2576 3385 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2577 3386 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2578 3387 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2579 3388 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2580 3389 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2581 3390 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2582 3391 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2583 3392 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2584 3393 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2585 3394 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2586 3395 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2587 3396 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2588 3397 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2589 3398 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2590 3399 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2591 3400 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2592 3401 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2593 3402 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2594 3403 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2595 3404 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2596 3405 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2597 3406 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2598 3407 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2599 3408 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2600 3409 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2601 3410 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2602 3411 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2603 3412 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2604 3413 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2605 3414 1.479730 GTTACTCCCTCCGTTCCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
2606 3415 0.890683 GTTACTCCCTCCGTTCCGAA 59.109 55.000 0.00 0.00 0.00 4.30
2607 3416 0.251297 TGTTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2608 3417 0.604578 TTGTTACTCCCTCCGTTCCG 59.395 55.000 0.00 0.00 0.00 4.30
2609 3418 3.007635 CAATTGTTACTCCCTCCGTTCC 58.992 50.000 0.00 0.00 0.00 3.62
2610 3419 3.007635 CCAATTGTTACTCCCTCCGTTC 58.992 50.000 4.43 0.00 0.00 3.95
2611 3420 2.640826 TCCAATTGTTACTCCCTCCGTT 59.359 45.455 4.43 0.00 0.00 4.44
2612 3421 2.262637 TCCAATTGTTACTCCCTCCGT 58.737 47.619 4.43 0.00 0.00 4.69
2613 3422 3.343941 TTCCAATTGTTACTCCCTCCG 57.656 47.619 4.43 0.00 0.00 4.63
2614 3423 4.207955 GGATTCCAATTGTTACTCCCTCC 58.792 47.826 4.43 0.00 0.00 4.30
2615 3424 4.855340 TGGATTCCAATTGTTACTCCCTC 58.145 43.478 1.94 0.00 0.00 4.30
2616 3425 4.946160 TGGATTCCAATTGTTACTCCCT 57.054 40.909 1.94 0.00 0.00 4.20
2617 3426 5.993748 TTTGGATTCCAATTGTTACTCCC 57.006 39.130 18.62 0.00 43.55 4.30
2618 3427 6.754193 TGTTTTGGATTCCAATTGTTACTCC 58.246 36.000 18.62 6.15 43.55 3.85
2692 3504 7.442656 TGCTATCTTATCAGTTTTACTAGGGC 58.557 38.462 0.00 0.00 0.00 5.19
2773 3585 8.483758 GGAGACCACAAAGGATTTTAGATACTA 58.516 37.037 0.00 0.00 41.22 1.82
2929 3741 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2930 3742 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2931 3743 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2932 3744 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2933 3745 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2934 3746 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2935 3747 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2936 3748 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2937 3749 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2938 3750 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2939 3751 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2947 3759 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
2948 3760 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2949 3761 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2950 3762 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2951 3763 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2952 3764 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2983 3795 9.745880 CGGATGTATCTAGTTACATTTTAGTGT 57.254 33.333 21.77 4.20 41.67 3.55
2984 3796 9.745880 ACGGATGTATCTAGTTACATTTTAGTG 57.254 33.333 21.77 13.11 41.67 2.74
3015 3827 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
3016 3828 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
3017 3829 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3018 3830 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3019 3831 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3020 3832 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3021 3833 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3022 3834 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3023 3835 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3024 3836 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3025 3837 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3026 3838 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3027 3839 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3028 3840 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3029 3841 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3030 3842 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3031 3843 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3032 3844 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3033 3845 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3034 3846 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3035 3847 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3036 3848 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3037 3849 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3038 3850 2.852714 TTAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3039 3851 3.036819 ACTTTAATACTCCCTCCGTCCC 58.963 50.000 0.00 0.00 0.00 4.46
3040 3852 4.750021 AACTTTAATACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
3041 3853 9.822185 TTATAAAACTTTAATACTCCCTCCGTC 57.178 33.333 0.00 0.00 0.00 4.79
3042 3854 9.828039 CTTATAAAACTTTAATACTCCCTCCGT 57.172 33.333 0.00 0.00 0.00 4.69
3043 3855 9.269453 CCTTATAAAACTTTAATACTCCCTCCG 57.731 37.037 0.00 0.00 0.00 4.63
3872 7455 4.365514 TCATGTACACAACCCAACAGAT 57.634 40.909 0.00 0.00 0.00 2.90
4018 7601 5.694231 TTGTCAACAAGATGTTCATCCTG 57.306 39.130 8.89 9.01 38.77 3.86
4098 7681 4.815533 ATGTGTGTTCACTCTAGCTGAT 57.184 40.909 0.00 0.00 44.14 2.90
4209 7792 5.840243 TGGGCTTGTTGATGATCTAAATG 57.160 39.130 0.00 0.00 0.00 2.32
4316 7899 2.094060 CACTGTTCGGTGTGTGCAA 58.906 52.632 3.85 0.00 33.04 4.08
4332 7915 2.290367 TCAAGCTTACATGTGTGTGCAC 59.710 45.455 10.75 10.75 45.44 4.57
4625 8251 1.424403 TCACCAGTTTGTCGTATGCG 58.576 50.000 0.00 0.00 39.92 4.73
4679 8305 1.133606 TCTGGGGTTTTTGTCCTGTCC 60.134 52.381 0.00 0.00 0.00 4.02
4846 8491 9.796180 TGGTAGAATTACAAGCTAAACCTAAAA 57.204 29.630 0.00 0.00 0.00 1.52
5199 8844 4.558178 CATCTTCTTCATCCTCATCCTCG 58.442 47.826 0.00 0.00 0.00 4.63
5274 8922 0.034059 CGTCACTTTGCTCCCAGTCT 59.966 55.000 0.00 0.00 0.00 3.24
5308 8956 9.388506 GACATCATCCTTTTCATCTTCTTCTAA 57.611 33.333 0.00 0.00 0.00 2.10
5355 9003 5.874892 TTGTTTTCATAACTTTTTCGCCG 57.125 34.783 0.00 0.00 0.00 6.46
5358 9006 8.113062 TGTGCATTTGTTTTCATAACTTTTTCG 58.887 29.630 0.00 0.00 0.00 3.46
5389 9037 5.629020 GCTTCGCATTAGATACTCTCTTCAG 59.371 44.000 0.00 0.00 35.28 3.02
5482 9130 0.036010 CGACCATCAACCAAGGAGCT 60.036 55.000 0.00 0.00 0.00 4.09
5562 9210 6.978080 GCATTTTCTTTCTGTTTTCAGGTGTA 59.022 34.615 0.00 0.00 46.94 2.90
5652 9300 4.409718 CATTGATGGATGCAATGGGAAA 57.590 40.909 0.00 0.00 45.42 3.13
5862 9510 6.430925 CCTGGAACTTTGATGTCTTCACATAA 59.569 38.462 0.00 0.00 43.79 1.90
5966 9614 4.837896 AGCTGCTTTTTCCTGTAAGTTC 57.162 40.909 0.00 0.00 0.00 3.01
6046 9694 1.375908 GACAGCATGCCGGAAGTCA 60.376 57.895 15.66 0.00 42.53 3.41
6091 9739 2.303890 AGGGCATCGCATCAGATATTCA 59.696 45.455 0.00 0.00 0.00 2.57
6278 9926 6.750963 CAGAAGAAATTCAGCTAATTGGCTTC 59.249 38.462 14.38 8.84 42.73 3.86
6306 9954 2.356022 CCATGTGTACTTGGGATGCAGA 60.356 50.000 8.62 0.00 37.48 4.26
6309 9957 2.418368 TCCATGTGTACTTGGGATGC 57.582 50.000 14.65 0.00 40.45 3.91
6339 9988 6.152661 TGAATATTTCCTGCTGTAAAAGTGGG 59.847 38.462 0.00 0.00 0.00 4.61
6490 10450 6.494893 TGTATGCTTAACAACTGGATTCAC 57.505 37.500 0.00 0.00 0.00 3.18
6505 10465 3.675228 GCAGCAAGCTGAAATGTATGCTT 60.675 43.478 25.03 0.00 46.30 3.91
6612 10572 2.905959 TCACTTCATGCATTTGCTCG 57.094 45.000 0.00 0.00 42.66 5.03
6619 10579 6.872628 ATTCATACGATTCACTTCATGCAT 57.127 33.333 0.00 0.00 0.00 3.96
6627 10587 7.015682 AGGTCAAGGATATTCATACGATTCACT 59.984 37.037 0.00 0.00 0.00 3.41
6648 10608 3.072038 CAGGATCCATGCTCATTAGGTCA 59.928 47.826 15.82 0.00 0.00 4.02
6684 10644 5.648960 TGCTCACTTGAAATTATCAGATGCA 59.351 36.000 0.00 0.00 39.77 3.96
6690 10650 4.701651 CCAGGTGCTCACTTGAAATTATCA 59.298 41.667 12.83 0.00 40.38 2.15
6863 10823 6.370718 GCATGAAAATTTCTGGAAAAGAGCAT 59.629 34.615 7.29 1.03 35.91 3.79
6899 10859 3.872511 TCCATAATTTGTTGCAGCAGG 57.127 42.857 2.72 0.42 0.00 4.85
6944 10904 7.754924 TCGATTACATCTTGGAAAATTTCTTGC 59.245 33.333 5.65 0.00 0.00 4.01
6965 10925 8.307483 TCACTTCTCTTCTTAATCAAGTCGATT 58.693 33.333 0.00 0.00 46.36 3.34
7104 11064 3.313526 CACAACAGAGACAAGAAACTGGG 59.686 47.826 0.00 0.00 35.08 4.45
7136 11097 1.131638 TCAACAGAACAGGACAGGCT 58.868 50.000 0.00 0.00 0.00 4.58
7181 11145 1.072331 TGCACCAAAGAGAAGGAGGAC 59.928 52.381 0.00 0.00 0.00 3.85
7186 11150 2.480419 CGTAACTGCACCAAAGAGAAGG 59.520 50.000 0.00 0.00 0.00 3.46
7224 11188 1.195115 CCCTTTCTCGGTCAGGATCA 58.805 55.000 0.00 0.00 0.00 2.92
7338 11302 3.677424 CGTGTTTCATCCTCTCCTTCTCC 60.677 52.174 0.00 0.00 0.00 3.71
7351 11315 2.037772 ACCTCTCTTGCTCGTGTTTCAT 59.962 45.455 0.00 0.00 0.00 2.57
7352 11316 1.412710 ACCTCTCTTGCTCGTGTTTCA 59.587 47.619 0.00 0.00 0.00 2.69
7355 11319 1.000283 CAGACCTCTCTTGCTCGTGTT 60.000 52.381 0.00 0.00 0.00 3.32
7459 11423 3.056322 TGATCAGCATATCATCACCTCCG 60.056 47.826 0.00 0.00 30.92 4.63
7482 11446 0.249398 ACTGGACCGTGATAGCAACC 59.751 55.000 0.00 0.00 0.00 3.77
7587 11553 2.680577 ACTCGTTTCGGTGTGTATTCC 58.319 47.619 0.00 0.00 0.00 3.01
7591 11557 4.502171 TGATTACTCGTTTCGGTGTGTA 57.498 40.909 0.00 0.00 0.00 2.90
7596 11562 4.689071 TGCATATGATTACTCGTTTCGGT 58.311 39.130 6.97 0.00 0.00 4.69
7621 11588 1.530771 GCCTCCATCCACATCAGCT 59.469 57.895 0.00 0.00 0.00 4.24
7835 11807 7.122650 CACCAATGATTAAATTCCAGTGTAGGT 59.877 37.037 0.00 0.00 0.00 3.08
7917 11892 4.404073 ACATGCTACAGGGTTTAGAGAGAG 59.596 45.833 0.00 0.00 0.00 3.20
7993 11968 3.327757 TGTACAGGAGAAGACCAAATGCT 59.672 43.478 0.00 0.00 0.00 3.79
8004 11979 1.833630 CCAGCCAGATGTACAGGAGAA 59.166 52.381 0.33 0.00 0.00 2.87
8044 12033 4.569966 GCCACTTGAAGTAGTGAGATGATG 59.430 45.833 0.00 0.00 46.72 3.07
8045 12034 4.383552 GGCCACTTGAAGTAGTGAGATGAT 60.384 45.833 0.00 0.00 46.72 2.45
8046 12035 3.055819 GGCCACTTGAAGTAGTGAGATGA 60.056 47.826 0.00 0.00 46.72 2.92
8056 12045 1.897560 GCTTAGTGGCCACTTGAAGT 58.102 50.000 41.69 20.57 42.54 3.01
8137 12126 2.378028 GAGCAGTAAAGCCGCTCTG 58.622 57.895 0.00 0.00 46.86 3.35
8140 12129 1.743252 GCTGAGCAGTAAAGCCGCT 60.743 57.895 0.00 0.00 39.12 5.52
8141 12130 1.577328 TTGCTGAGCAGTAAAGCCGC 61.577 55.000 7.39 0.00 40.61 6.53
8142 12131 1.089920 ATTGCTGAGCAGTAAAGCCG 58.910 50.000 7.39 0.00 40.61 5.52
8144 12133 1.468736 GGCATTGCTGAGCAGTAAAGC 60.469 52.381 16.48 16.48 43.54 3.51
8145 12134 1.133790 GGGCATTGCTGAGCAGTAAAG 59.866 52.381 7.39 2.56 40.61 1.85
8148 12137 0.393402 CAGGGCATTGCTGAGCAGTA 60.393 55.000 7.39 0.00 40.61 2.74
8173 12162 1.898472 CACACTGAGGTGAGGTCAGAT 59.102 52.381 7.09 0.00 43.65 2.90
8186 12175 8.962884 ACTGATACATAAATAATGCACACTGA 57.037 30.769 0.00 0.00 39.39 3.41
8190 12179 8.344831 GCAAGACTGATACATAAATAATGCACA 58.655 33.333 0.00 0.00 39.39 4.57
8230 12219 4.656112 TGACCTAAAAAGGCATGGGAAAAA 59.344 37.500 0.00 0.00 0.00 1.94
8255 12246 2.486203 TGTGTTCCATGATTGGTAACGC 59.514 45.455 0.00 10.94 44.06 4.84
8259 12250 4.458642 CACATGTGTGTTCCATGATTGGTA 59.541 41.667 18.03 0.00 41.78 3.25
8349 12344 1.351017 TGGGAGTCAGTTTGGGATGTC 59.649 52.381 0.00 0.00 0.00 3.06
8367 12365 1.006832 GTAGTGGTAGCACGCAATGG 58.993 55.000 18.73 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.