Multiple sequence alignment - TraesCS5A01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G283700 chr5A 100.000 2198 0 0 1 2198 491738972 491741169 0.000000e+00 4060.0
1 TraesCS5A01G283700 chr5A 94.050 1563 57 10 1 1538 589307629 589309180 0.000000e+00 2338.0
2 TraesCS5A01G283700 chr5A 91.472 1454 63 11 1 1420 566143926 566142500 0.000000e+00 1941.0
3 TraesCS5A01G283700 chr5A 91.644 730 42 7 816 1541 401269902 401269188 0.000000e+00 992.0
4 TraesCS5A01G283700 chr4A 92.998 1571 62 9 1 1542 612663766 612665317 0.000000e+00 2248.0
5 TraesCS5A01G283700 chr4A 81.773 406 54 7 1792 2177 93900926 93900521 2.720000e-84 322.0
6 TraesCS5A01G283700 chr4A 76.642 137 23 9 1526 1656 446954131 446953998 1.410000e-07 67.6
7 TraesCS5A01G283700 chr2A 91.321 1590 71 12 1 1540 202073771 202075343 0.000000e+00 2109.0
8 TraesCS5A01G283700 chr2A 93.310 1450 57 8 1 1420 703351582 703353021 0.000000e+00 2104.0
9 TraesCS5A01G283700 chr2A 84.640 1569 85 47 1 1498 255910254 255911737 0.000000e+00 1419.0
10 TraesCS5A01G283700 chr2A 95.365 863 36 3 1 862 758116634 758115775 0.000000e+00 1369.0
11 TraesCS5A01G283700 chr2A 91.678 733 43 7 813 1541 293050174 293050892 0.000000e+00 1000.0
12 TraesCS5A01G283700 chr1A 93.058 1455 46 14 1 1409 18104389 18105834 0.000000e+00 2076.0
13 TraesCS5A01G283700 chr1A 92.386 880 34 16 1 848 520127585 520126707 0.000000e+00 1223.0
14 TraesCS5A01G283700 chr6A 91.753 1455 55 10 132 1538 585443866 585445303 0.000000e+00 1962.0
15 TraesCS5A01G283700 chr6A 91.781 730 45 6 816 1541 93269316 93268598 0.000000e+00 1002.0
16 TraesCS5A01G283700 chr6A 93.984 615 23 6 816 1425 544166867 544166262 0.000000e+00 918.0
17 TraesCS5A01G283700 chr6A 78.571 140 20 5 1724 1853 11536224 11536085 1.400000e-12 84.2
18 TraesCS5A01G283700 chr3A 89.885 1572 73 28 1 1541 509546134 509547650 0.000000e+00 1943.0
19 TraesCS5A01G283700 chr3A 92.362 851 53 6 1 848 725340968 725341809 0.000000e+00 1201.0
20 TraesCS5A01G283700 chr3A 78.337 457 72 16 1741 2171 213100380 213100835 1.000000e-68 270.0
21 TraesCS5A01G283700 chr5D 88.889 1575 108 35 1 1537 233815803 233814258 0.000000e+00 1877.0
22 TraesCS5A01G283700 chr5D 93.557 1164 62 4 1 1164 559114479 559115629 0.000000e+00 1722.0
23 TraesCS5A01G283700 chr5D 79.036 477 79 13 1741 2198 485378359 485377885 7.620000e-80 307.0
24 TraesCS5A01G283700 chr3D 87.709 1611 80 25 1 1538 336809954 336811519 0.000000e+00 1770.0
25 TraesCS5A01G283700 chr3D 81.231 325 57 4 1871 2193 105889229 105888907 2.160000e-65 259.0
26 TraesCS5A01G283700 chr3D 79.188 197 36 4 1999 2193 106734887 106734694 4.920000e-27 132.0
27 TraesCS5A01G283700 chr7A 94.786 863 38 6 1 862 18187909 18187053 0.000000e+00 1338.0
28 TraesCS5A01G283700 chr7A 95.537 829 36 1 1 828 474516659 474517487 0.000000e+00 1325.0
29 TraesCS5A01G283700 chr7A 90.515 738 42 11 816 1543 18187048 18186329 0.000000e+00 950.0
30 TraesCS5A01G283700 chr7A 79.959 484 68 16 1742 2198 496096489 496096008 1.630000e-86 329.0
31 TraesCS5A01G283700 chr7A 77.246 334 70 4 1868 2198 441977630 441977960 8.010000e-45 191.0
32 TraesCS5A01G283700 chr7A 96.970 33 1 0 923 955 37184127 37184159 3.050000e-04 56.5
33 TraesCS5A01G283700 chr4D 81.250 464 60 18 1741 2177 386372886 386372423 1.250000e-92 350.0
34 TraesCS5A01G283700 chr6B 80.287 487 65 17 1741 2198 26724057 26723573 2.700000e-89 339.0
35 TraesCS5A01G283700 chr6B 73.826 298 76 2 1868 2164 540572609 540572905 1.380000e-22 117.0
36 TraesCS5A01G283700 chr7D 85.161 310 46 0 1866 2175 534666046 534665737 3.520000e-83 318.0
37 TraesCS5A01G283700 chr7D 76.180 445 55 20 1775 2198 633939272 633939686 1.040000e-43 187.0
38 TraesCS5A01G283700 chr7D 73.000 400 86 15 1796 2175 193495400 193495003 1.070000e-23 121.0
39 TraesCS5A01G283700 chr6D 81.350 311 58 0 1888 2198 106705732 106706042 1.010000e-63 254.0
40 TraesCS5A01G283700 chr7B 78.852 331 62 6 1872 2198 253684438 253684764 1.320000e-52 217.0
41 TraesCS5A01G283700 chr7B 86.364 66 9 0 1538 1603 649018310 649018375 3.030000e-09 73.1
42 TraesCS5A01G283700 chr4B 76.731 361 49 29 1537 1865 666617057 666617414 3.750000e-38 169.0
43 TraesCS5A01G283700 chr4B 75.940 133 24 8 1527 1654 23325796 23325925 6.550000e-06 62.1
44 TraesCS5A01G283700 chrUn 89.189 74 8 0 2104 2177 108310630 108310557 2.320000e-15 93.5
45 TraesCS5A01G283700 chr2D 88.000 50 6 0 1792 1841 84344401 84344352 2.360000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G283700 chr5A 491738972 491741169 2197 False 4060 4060 100.0000 1 2198 1 chr5A.!!$F1 2197
1 TraesCS5A01G283700 chr5A 589307629 589309180 1551 False 2338 2338 94.0500 1 1538 1 chr5A.!!$F2 1537
2 TraesCS5A01G283700 chr5A 566142500 566143926 1426 True 1941 1941 91.4720 1 1420 1 chr5A.!!$R2 1419
3 TraesCS5A01G283700 chr5A 401269188 401269902 714 True 992 992 91.6440 816 1541 1 chr5A.!!$R1 725
4 TraesCS5A01G283700 chr4A 612663766 612665317 1551 False 2248 2248 92.9980 1 1542 1 chr4A.!!$F1 1541
5 TraesCS5A01G283700 chr2A 202073771 202075343 1572 False 2109 2109 91.3210 1 1540 1 chr2A.!!$F1 1539
6 TraesCS5A01G283700 chr2A 703351582 703353021 1439 False 2104 2104 93.3100 1 1420 1 chr2A.!!$F4 1419
7 TraesCS5A01G283700 chr2A 255910254 255911737 1483 False 1419 1419 84.6400 1 1498 1 chr2A.!!$F2 1497
8 TraesCS5A01G283700 chr2A 758115775 758116634 859 True 1369 1369 95.3650 1 862 1 chr2A.!!$R1 861
9 TraesCS5A01G283700 chr2A 293050174 293050892 718 False 1000 1000 91.6780 813 1541 1 chr2A.!!$F3 728
10 TraesCS5A01G283700 chr1A 18104389 18105834 1445 False 2076 2076 93.0580 1 1409 1 chr1A.!!$F1 1408
11 TraesCS5A01G283700 chr1A 520126707 520127585 878 True 1223 1223 92.3860 1 848 1 chr1A.!!$R1 847
12 TraesCS5A01G283700 chr6A 585443866 585445303 1437 False 1962 1962 91.7530 132 1538 1 chr6A.!!$F1 1406
13 TraesCS5A01G283700 chr6A 93268598 93269316 718 True 1002 1002 91.7810 816 1541 1 chr6A.!!$R2 725
14 TraesCS5A01G283700 chr6A 544166262 544166867 605 True 918 918 93.9840 816 1425 1 chr6A.!!$R3 609
15 TraesCS5A01G283700 chr3A 509546134 509547650 1516 False 1943 1943 89.8850 1 1541 1 chr3A.!!$F2 1540
16 TraesCS5A01G283700 chr3A 725340968 725341809 841 False 1201 1201 92.3620 1 848 1 chr3A.!!$F3 847
17 TraesCS5A01G283700 chr5D 233814258 233815803 1545 True 1877 1877 88.8890 1 1537 1 chr5D.!!$R1 1536
18 TraesCS5A01G283700 chr5D 559114479 559115629 1150 False 1722 1722 93.5570 1 1164 1 chr5D.!!$F1 1163
19 TraesCS5A01G283700 chr3D 336809954 336811519 1565 False 1770 1770 87.7090 1 1538 1 chr3D.!!$F1 1537
20 TraesCS5A01G283700 chr7A 474516659 474517487 828 False 1325 1325 95.5370 1 828 1 chr7A.!!$F3 827
21 TraesCS5A01G283700 chr7A 18186329 18187909 1580 True 1144 1338 92.6505 1 1543 2 chr7A.!!$R2 1542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 1.228398 TGGGCGGCATGTCAAAAGA 60.228 52.632 12.47 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1682 0.039617 AGCAGCGCGTAAAAATGCAA 60.04 45.0 16.43 0.0 39.34 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.606885 GGTCCCGGTGGTCGACAATA 61.607 60.000 18.91 0.00 42.43 1.90
64 65 1.228398 TGGGCGGCATGTCAAAAGA 60.228 52.632 12.47 0.00 0.00 2.52
345 412 3.787634 CGTGAAGATTTGGATGATTTGCG 59.212 43.478 0.00 0.00 0.00 4.85
388 464 5.739161 GCGAACAATTAAGTTGGATGATGAC 59.261 40.000 0.00 0.00 42.28 3.06
411 490 3.937778 TGAGGAGGATGATGCATCAAA 57.062 42.857 31.79 11.44 42.13 2.69
480 559 4.796495 AAAGCGGCCGGATGGGTC 62.796 66.667 29.38 8.07 38.44 4.46
609 710 1.299648 CAAGGACCCAAGATGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
668 832 1.280457 GGCTTTGGAGGAGAGGAAGA 58.720 55.000 0.00 0.00 0.00 2.87
744 908 3.750371 TGGACACAACTAACCTCAATGG 58.250 45.455 0.00 0.00 42.93 3.16
1265 1530 2.299867 GTTGGATGAACTTGTGGGCATT 59.700 45.455 0.00 0.00 0.00 3.56
1457 1796 4.694233 CTGGAGCCAGCACTGCGT 62.694 66.667 3.18 0.00 37.24 5.24
1543 1883 3.740764 CCTGTTGGAGATGCTCTTAGAGC 60.741 52.174 25.69 25.69 45.20 4.09
1601 1941 4.845896 GTGAGTATTAACGCGCGC 57.154 55.556 32.58 23.91 0.00 6.86
1623 1963 4.776953 CGGTTTCGCGCGCTTCAG 62.777 66.667 30.48 13.90 0.00 3.02
1647 1987 2.511600 CGGAAGATCCCGGCACAC 60.512 66.667 0.00 0.00 45.43 3.82
1648 1988 2.511600 GGAAGATCCCGGCACACG 60.512 66.667 0.00 0.00 43.80 4.49
1657 1997 2.943653 CGGCACACGGGAAAAGAC 59.056 61.111 0.00 0.00 39.42 3.01
1658 1998 2.613506 CGGCACACGGGAAAAGACC 61.614 63.158 0.00 0.00 39.42 3.85
1664 2004 4.084888 CGGGAAAAGACCGTGCGC 62.085 66.667 0.00 0.00 46.03 6.09
1665 2005 2.975799 GGGAAAAGACCGTGCGCA 60.976 61.111 5.66 5.66 0.00 6.09
1666 2006 2.251371 GGAAAAGACCGTGCGCAC 59.749 61.111 30.42 30.42 0.00 5.34
1667 2007 2.251371 GAAAAGACCGTGCGCACC 59.749 61.111 33.23 20.11 0.00 5.01
1668 2008 3.573489 GAAAAGACCGTGCGCACCG 62.573 63.158 33.23 28.53 0.00 4.94
1669 2009 4.595538 AAAGACCGTGCGCACCGA 62.596 61.111 33.23 0.00 0.00 4.69
1670 2010 4.595538 AAGACCGTGCGCACCGAA 62.596 61.111 33.23 0.00 0.00 4.30
1671 2011 4.595538 AGACCGTGCGCACCGAAA 62.596 61.111 33.23 0.00 0.00 3.46
1672 2012 3.641986 GACCGTGCGCACCGAAAA 61.642 61.111 33.23 0.00 0.00 2.29
1673 2013 3.170810 GACCGTGCGCACCGAAAAA 62.171 57.895 33.23 0.00 0.00 1.94
1674 2014 2.724358 CCGTGCGCACCGAAAAAC 60.724 61.111 33.23 7.67 0.00 2.43
1675 2015 2.724358 CGTGCGCACCGAAAAACC 60.724 61.111 33.23 6.88 0.00 3.27
1676 2016 2.724358 GTGCGCACCGAAAAACCG 60.724 61.111 30.12 0.00 0.00 4.44
1683 2023 4.050934 CCGAAAAACCGGCCCAGC 62.051 66.667 0.00 0.00 43.25 4.85
1684 2024 4.398598 CGAAAAACCGGCCCAGCG 62.399 66.667 0.00 0.00 0.00 5.18
1685 2025 4.717629 GAAAAACCGGCCCAGCGC 62.718 66.667 0.00 0.00 0.00 5.92
1693 2033 3.991051 GGCCCAGCGCGCTCTATA 61.991 66.667 34.28 0.00 38.94 1.31
1694 2034 2.029073 GCCCAGCGCGCTCTATAA 59.971 61.111 34.28 0.00 0.00 0.98
1695 2035 1.594293 GCCCAGCGCGCTCTATAAA 60.594 57.895 34.28 0.00 0.00 1.40
1696 2036 1.157870 GCCCAGCGCGCTCTATAAAA 61.158 55.000 34.28 0.00 0.00 1.52
1697 2037 0.582005 CCCAGCGCGCTCTATAAAAC 59.418 55.000 34.28 0.00 0.00 2.43
1698 2038 1.286501 CCAGCGCGCTCTATAAAACA 58.713 50.000 34.28 0.00 0.00 2.83
1699 2039 1.004927 CCAGCGCGCTCTATAAAACAC 60.005 52.381 34.28 0.00 0.00 3.32
1700 2040 0.921347 AGCGCGCTCTATAAAACACG 59.079 50.000 31.32 0.00 0.00 4.49
1701 2041 0.650759 GCGCGCTCTATAAAACACGC 60.651 55.000 26.67 0.00 42.69 5.34
1702 2042 3.399350 GCGCTCTATAAAACACGCG 57.601 52.632 3.53 3.53 43.03 6.01
1703 2043 0.643820 GCGCTCTATAAAACACGCGT 59.356 50.000 5.58 5.58 42.25 6.01
1704 2044 1.589022 GCGCTCTATAAAACACGCGTG 60.589 52.381 35.99 35.99 42.25 5.34
1705 2045 1.589022 CGCTCTATAAAACACGCGTGC 60.589 52.381 37.35 19.04 36.28 5.34
1706 2046 1.267383 GCTCTATAAAACACGCGTGCC 60.267 52.381 37.35 10.13 0.00 5.01
1707 2047 0.993532 TCTATAAAACACGCGTGCCG 59.006 50.000 37.35 16.58 44.21 5.69
1708 2048 0.993532 CTATAAAACACGCGTGCCGA 59.006 50.000 37.35 21.10 41.02 5.54
1709 2049 1.591158 CTATAAAACACGCGTGCCGAT 59.409 47.619 37.35 25.68 41.02 4.18
1710 2050 0.096281 ATAAAACACGCGTGCCGATG 59.904 50.000 37.35 15.03 41.02 3.84
1711 2051 2.501607 TAAAACACGCGTGCCGATGC 62.502 55.000 37.35 0.00 41.02 3.91
1719 2059 3.142838 GTGCCGATGCCAGCCAAT 61.143 61.111 0.00 0.00 36.33 3.16
1720 2060 2.829914 TGCCGATGCCAGCCAATC 60.830 61.111 0.00 0.00 36.33 2.67
1721 2061 2.829914 GCCGATGCCAGCCAATCA 60.830 61.111 0.00 0.00 0.00 2.57
1722 2062 2.842256 GCCGATGCCAGCCAATCAG 61.842 63.158 0.00 0.00 0.00 2.90
1723 2063 1.153107 CCGATGCCAGCCAATCAGA 60.153 57.895 0.00 0.00 0.00 3.27
1724 2064 1.442526 CCGATGCCAGCCAATCAGAC 61.443 60.000 0.00 0.00 0.00 3.51
1725 2065 0.745486 CGATGCCAGCCAATCAGACA 60.745 55.000 0.00 0.00 0.00 3.41
1726 2066 0.737219 GATGCCAGCCAATCAGACAC 59.263 55.000 0.00 0.00 0.00 3.67
1727 2067 0.330604 ATGCCAGCCAATCAGACACT 59.669 50.000 0.00 0.00 0.00 3.55
1728 2068 0.321919 TGCCAGCCAATCAGACACTC 60.322 55.000 0.00 0.00 0.00 3.51
1729 2069 1.364626 GCCAGCCAATCAGACACTCG 61.365 60.000 0.00 0.00 0.00 4.18
1730 2070 0.247460 CCAGCCAATCAGACACTCGA 59.753 55.000 0.00 0.00 0.00 4.04
1731 2071 1.638133 CAGCCAATCAGACACTCGAG 58.362 55.000 11.84 11.84 0.00 4.04
1732 2072 0.108424 AGCCAATCAGACACTCGAGC 60.108 55.000 13.61 0.00 0.00 5.03
1733 2073 1.416813 GCCAATCAGACACTCGAGCG 61.417 60.000 13.61 5.41 0.00 5.03
1734 2074 1.416813 CCAATCAGACACTCGAGCGC 61.417 60.000 13.61 0.00 0.00 5.92
1735 2075 0.457509 CAATCAGACACTCGAGCGCT 60.458 55.000 11.27 11.27 0.00 5.92
1736 2076 0.179150 AATCAGACACTCGAGCGCTC 60.179 55.000 27.64 27.64 0.00 5.03
1737 2077 1.308783 ATCAGACACTCGAGCGCTCA 61.309 55.000 34.69 21.12 0.00 4.26
1738 2078 1.799519 CAGACACTCGAGCGCTCAC 60.800 63.158 34.69 18.01 0.00 3.51
1739 2079 2.255554 GACACTCGAGCGCTCACA 59.744 61.111 34.69 20.49 0.00 3.58
1740 2080 2.049985 ACACTCGAGCGCTCACAC 60.050 61.111 34.69 11.10 0.00 3.82
1741 2081 2.807045 CACTCGAGCGCTCACACC 60.807 66.667 34.69 10.69 0.00 4.16
1742 2082 4.406173 ACTCGAGCGCTCACACCG 62.406 66.667 34.69 22.24 0.00 4.94
1751 2091 3.322466 CTCACACCGCCCCCTTCT 61.322 66.667 0.00 0.00 0.00 2.85
1752 2092 2.852075 TCACACCGCCCCCTTCTT 60.852 61.111 0.00 0.00 0.00 2.52
1753 2093 2.359975 CACACCGCCCCCTTCTTC 60.360 66.667 0.00 0.00 0.00 2.87
1754 2094 3.647771 ACACCGCCCCCTTCTTCC 61.648 66.667 0.00 0.00 0.00 3.46
1755 2095 3.330720 CACCGCCCCCTTCTTCCT 61.331 66.667 0.00 0.00 0.00 3.36
1756 2096 3.009714 ACCGCCCCCTTCTTCCTC 61.010 66.667 0.00 0.00 0.00 3.71
1757 2097 4.162690 CCGCCCCCTTCTTCCTCG 62.163 72.222 0.00 0.00 0.00 4.63
1758 2098 4.840005 CGCCCCCTTCTTCCTCGC 62.840 72.222 0.00 0.00 0.00 5.03
1759 2099 3.717294 GCCCCCTTCTTCCTCGCA 61.717 66.667 0.00 0.00 0.00 5.10
1760 2100 3.049080 GCCCCCTTCTTCCTCGCAT 62.049 63.158 0.00 0.00 0.00 4.73
1761 2101 1.147153 CCCCCTTCTTCCTCGCATC 59.853 63.158 0.00 0.00 0.00 3.91
1762 2102 1.147153 CCCCTTCTTCCTCGCATCC 59.853 63.158 0.00 0.00 0.00 3.51
1763 2103 1.227380 CCCTTCTTCCTCGCATCCG 60.227 63.158 0.00 0.00 0.00 4.18
1764 2104 1.227380 CCTTCTTCCTCGCATCCGG 60.227 63.158 0.00 0.00 34.56 5.14
1765 2105 1.517832 CTTCTTCCTCGCATCCGGT 59.482 57.895 0.00 0.00 34.56 5.28
1766 2106 0.807667 CTTCTTCCTCGCATCCGGTG 60.808 60.000 0.00 0.00 34.56 4.94
1861 2201 3.929948 CGCTCTTCCGGCGCATTC 61.930 66.667 10.83 0.00 45.83 2.67
1862 2202 2.512515 GCTCTTCCGGCGCATTCT 60.513 61.111 10.83 0.00 0.00 2.40
1863 2203 1.227263 GCTCTTCCGGCGCATTCTA 60.227 57.895 10.83 0.00 0.00 2.10
1864 2204 1.491505 GCTCTTCCGGCGCATTCTAC 61.492 60.000 10.83 0.00 0.00 2.59
1865 2205 0.179111 CTCTTCCGGCGCATTCTACA 60.179 55.000 10.83 0.00 0.00 2.74
1866 2206 0.459585 TCTTCCGGCGCATTCTACAC 60.460 55.000 10.83 0.00 0.00 2.90
1867 2207 1.752501 CTTCCGGCGCATTCTACACG 61.753 60.000 10.83 0.00 0.00 4.49
1868 2208 2.495366 TTCCGGCGCATTCTACACGT 62.495 55.000 10.83 0.00 0.00 4.49
1869 2209 2.695055 CGGCGCATTCTACACGTG 59.305 61.111 15.48 15.48 0.00 4.49
1870 2210 2.399611 GGCGCATTCTACACGTGC 59.600 61.111 17.22 0.00 35.59 5.34
1874 2214 2.738147 GCATTCTACACGTGCGTCT 58.262 52.632 17.22 0.00 0.00 4.18
1875 2215 0.640768 GCATTCTACACGTGCGTCTC 59.359 55.000 17.22 0.00 0.00 3.36
1876 2216 0.907837 CATTCTACACGTGCGTCTCG 59.092 55.000 17.22 0.00 0.00 4.04
1877 2217 0.179171 ATTCTACACGTGCGTCTCGG 60.179 55.000 17.22 0.00 0.00 4.63
1878 2218 1.509644 TTCTACACGTGCGTCTCGGT 61.510 55.000 17.22 0.00 0.00 4.69
1879 2219 1.511464 CTACACGTGCGTCTCGGTC 60.511 63.158 17.22 0.00 0.00 4.79
1880 2220 1.909141 CTACACGTGCGTCTCGGTCT 61.909 60.000 17.22 0.00 0.00 3.85
1881 2221 1.904852 TACACGTGCGTCTCGGTCTC 61.905 60.000 17.22 0.00 0.00 3.36
1882 2222 2.976350 ACGTGCGTCTCGGTCTCA 60.976 61.111 0.00 0.00 0.00 3.27
1883 2223 2.202362 CGTGCGTCTCGGTCTCAG 60.202 66.667 0.00 0.00 0.00 3.35
1884 2224 2.179517 GTGCGTCTCGGTCTCAGG 59.820 66.667 0.00 0.00 0.00 3.86
1885 2225 2.033602 TGCGTCTCGGTCTCAGGA 59.966 61.111 0.00 0.00 0.00 3.86
1886 2226 1.602605 TGCGTCTCGGTCTCAGGAA 60.603 57.895 0.00 0.00 0.00 3.36
1887 2227 1.137825 GCGTCTCGGTCTCAGGAAG 59.862 63.158 0.00 0.00 0.00 3.46
1888 2228 1.587933 GCGTCTCGGTCTCAGGAAGT 61.588 60.000 0.00 0.00 0.00 3.01
1889 2229 0.882474 CGTCTCGGTCTCAGGAAGTT 59.118 55.000 0.00 0.00 0.00 2.66
1890 2230 1.135632 CGTCTCGGTCTCAGGAAGTTC 60.136 57.143 0.00 0.00 0.00 3.01
1891 2231 1.135632 GTCTCGGTCTCAGGAAGTTCG 60.136 57.143 0.00 0.00 0.00 3.95
1892 2232 1.166129 CTCGGTCTCAGGAAGTTCGA 58.834 55.000 0.00 0.00 0.00 3.71
1893 2233 1.131504 CTCGGTCTCAGGAAGTTCGAG 59.868 57.143 0.00 0.00 39.81 4.04
1894 2234 1.166129 CGGTCTCAGGAAGTTCGAGA 58.834 55.000 6.43 6.43 33.46 4.04
1896 2236 2.640346 GTCTCAGGAAGTTCGAGACC 57.360 55.000 21.36 10.09 46.48 3.85
1897 2237 1.135632 GTCTCAGGAAGTTCGAGACCG 60.136 57.143 21.36 3.94 46.48 4.79
1898 2238 0.456995 CTCAGGAAGTTCGAGACCGC 60.457 60.000 2.52 0.00 35.37 5.68
1899 2239 1.801913 CAGGAAGTTCGAGACCGCG 60.802 63.158 0.00 0.00 35.37 6.46
1900 2240 3.179939 GGAAGTTCGAGACCGCGC 61.180 66.667 0.00 0.00 35.37 6.86
1901 2241 2.430244 GAAGTTCGAGACCGCGCA 60.430 61.111 8.75 0.00 35.37 6.09
1902 2242 2.019951 GAAGTTCGAGACCGCGCAA 61.020 57.895 8.75 0.00 35.37 4.85
1903 2243 1.945776 GAAGTTCGAGACCGCGCAAG 61.946 60.000 8.75 0.00 35.37 4.01
1904 2244 2.416244 AAGTTCGAGACCGCGCAAGA 62.416 55.000 8.75 0.00 41.00 3.02
1905 2245 2.126463 TTCGAGACCGCGCAAGAG 60.126 61.111 8.75 0.00 41.00 2.85
1932 2272 4.112341 GCGTACGACGTGGGAGCT 62.112 66.667 21.65 0.00 44.73 4.09
1933 2273 2.564975 CGTACGACGTGGGAGCTT 59.435 61.111 10.44 0.00 36.74 3.74
1934 2274 1.800315 CGTACGACGTGGGAGCTTG 60.800 63.158 10.44 0.00 36.74 4.01
1935 2275 1.445582 GTACGACGTGGGAGCTTGG 60.446 63.158 11.56 0.00 0.00 3.61
1936 2276 3.291101 TACGACGTGGGAGCTTGGC 62.291 63.158 11.56 0.00 0.00 4.52
1944 2284 4.847444 GGAGCTTGGCGCCTCTCC 62.847 72.222 31.80 31.80 44.91 3.71
1945 2285 4.087892 GAGCTTGGCGCCTCTCCA 62.088 66.667 29.70 2.88 40.39 3.86
1946 2286 4.093291 AGCTTGGCGCCTCTCCAG 62.093 66.667 29.70 15.86 40.39 3.86
1955 2295 4.154347 CCTCTCCAGGCCACGCTC 62.154 72.222 5.01 0.00 30.98 5.03
1956 2296 4.504916 CTCTCCAGGCCACGCTCG 62.505 72.222 5.01 0.00 0.00 5.03
1961 2301 4.827087 CAGGCCACGCTCGCAGAT 62.827 66.667 5.01 0.00 33.89 2.90
1962 2302 3.147595 AGGCCACGCTCGCAGATA 61.148 61.111 5.01 0.00 33.89 1.98
1963 2303 2.202878 GGCCACGCTCGCAGATAA 60.203 61.111 0.00 0.00 33.89 1.75
1964 2304 1.813753 GGCCACGCTCGCAGATAAA 60.814 57.895 0.00 0.00 33.89 1.40
1965 2305 1.348594 GCCACGCTCGCAGATAAAC 59.651 57.895 0.00 0.00 33.89 2.01
1966 2306 1.084370 GCCACGCTCGCAGATAAACT 61.084 55.000 0.00 0.00 33.89 2.66
1967 2307 1.359848 CCACGCTCGCAGATAAACTT 58.640 50.000 0.00 0.00 33.89 2.66
1968 2308 1.324736 CCACGCTCGCAGATAAACTTC 59.675 52.381 0.00 0.00 33.89 3.01
1969 2309 1.007011 CACGCTCGCAGATAAACTTCG 60.007 52.381 0.00 0.00 36.67 3.79
1970 2310 1.135489 ACGCTCGCAGATAAACTTCGA 60.135 47.619 0.00 0.00 41.32 3.71
1971 2311 1.253034 CGCTCGCAGATAAACTTCGAC 59.747 52.381 0.00 0.00 39.07 4.20
1972 2312 1.253034 GCTCGCAGATAAACTTCGACG 59.747 52.381 0.00 0.00 39.07 5.12
1973 2313 2.782163 CTCGCAGATAAACTTCGACGA 58.218 47.619 0.00 0.00 39.07 4.20
1974 2314 2.512885 TCGCAGATAAACTTCGACGAC 58.487 47.619 0.00 0.00 39.07 4.34
1975 2315 1.249491 CGCAGATAAACTTCGACGACG 59.751 52.381 0.00 0.00 37.44 5.12
1976 2316 1.007319 GCAGATAAACTTCGACGACGC 60.007 52.381 1.48 0.00 39.58 5.19
1977 2317 1.249491 CAGATAAACTTCGACGACGCG 59.751 52.381 3.53 3.53 39.58 6.01
1978 2318 0.045253 GATAAACTTCGACGACGCGC 60.045 55.000 5.73 0.00 39.58 6.86
1979 2319 0.730155 ATAAACTTCGACGACGCGCA 60.730 50.000 5.73 0.00 39.58 6.09
1980 2320 1.332180 TAAACTTCGACGACGCGCAG 61.332 55.000 5.73 2.10 39.58 5.18
1981 2321 2.994143 AAACTTCGACGACGCGCAGA 62.994 55.000 5.73 0.00 39.58 4.26
1982 2322 3.524759 CTTCGACGACGCGCAGAC 61.525 66.667 5.73 0.00 39.58 3.51
2003 2343 4.711949 CCAGCAGGCGCAGAACCT 62.712 66.667 10.83 0.00 42.27 3.50
2004 2344 3.123620 CAGCAGGCGCAGAACCTC 61.124 66.667 10.83 0.00 42.27 3.85
2005 2345 4.749310 AGCAGGCGCAGAACCTCG 62.749 66.667 10.83 0.00 42.27 4.63
2011 2351 4.821589 CGCAGAACCTCGCCCCTC 62.822 72.222 0.00 0.00 0.00 4.30
2012 2352 4.475135 GCAGAACCTCGCCCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
2013 2353 4.148825 CAGAACCTCGCCCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
2014 2354 4.698625 AGAACCTCGCCCCTCCGT 62.699 66.667 0.00 0.00 0.00 4.69
2015 2355 3.703127 GAACCTCGCCCCTCCGTT 61.703 66.667 0.00 0.00 0.00 4.44
2016 2356 3.952628 GAACCTCGCCCCTCCGTTG 62.953 68.421 0.00 0.00 0.00 4.10
2022 2362 3.766691 GCCCCTCCGTTGCGTCTA 61.767 66.667 0.00 0.00 0.00 2.59
2023 2363 2.494918 CCCCTCCGTTGCGTCTAG 59.505 66.667 0.00 0.00 0.00 2.43
2024 2364 2.348888 CCCCTCCGTTGCGTCTAGT 61.349 63.158 0.00 0.00 0.00 2.57
2025 2365 1.033746 CCCCTCCGTTGCGTCTAGTA 61.034 60.000 0.00 0.00 0.00 1.82
2026 2366 0.813184 CCCTCCGTTGCGTCTAGTAA 59.187 55.000 0.00 0.00 0.00 2.24
2027 2367 1.468736 CCCTCCGTTGCGTCTAGTAAC 60.469 57.143 0.00 0.00 41.23 2.50
2028 2368 1.468736 CCTCCGTTGCGTCTAGTAACC 60.469 57.143 0.00 0.00 41.54 2.85
2029 2369 0.168788 TCCGTTGCGTCTAGTAACCG 59.831 55.000 0.00 0.00 41.54 4.44
2030 2370 0.168788 CCGTTGCGTCTAGTAACCGA 59.831 55.000 0.00 0.00 41.54 4.69
2031 2371 1.253999 CGTTGCGTCTAGTAACCGAC 58.746 55.000 0.00 0.00 41.54 4.79
2038 2378 3.876242 GTCTAGTAACCGACGAGGATC 57.124 52.381 8.56 0.00 45.00 3.36
2051 2391 1.542544 GAGGATCGTAACGAACACCG 58.457 55.000 0.00 0.00 39.99 4.94
2052 2392 0.457337 AGGATCGTAACGAACACCGC 60.457 55.000 0.00 0.00 43.32 5.68
2053 2393 0.733566 GGATCGTAACGAACACCGCA 60.734 55.000 0.00 0.00 43.32 5.69
2054 2394 0.638746 GATCGTAACGAACACCGCAG 59.361 55.000 0.00 0.00 43.32 5.18
2055 2395 0.241749 ATCGTAACGAACACCGCAGA 59.758 50.000 0.00 0.00 43.32 4.26
2056 2396 0.661187 TCGTAACGAACACCGCAGAC 60.661 55.000 0.00 0.00 43.32 3.51
2057 2397 1.771044 GTAACGAACACCGCAGACG 59.229 57.895 0.00 0.00 43.32 4.18
2058 2398 0.661187 GTAACGAACACCGCAGACGA 60.661 55.000 0.00 0.00 43.93 4.20
2059 2399 0.661187 TAACGAACACCGCAGACGAC 60.661 55.000 0.00 0.00 43.93 4.34
2060 2400 2.354188 CGAACACCGCAGACGACA 60.354 61.111 0.00 0.00 43.93 4.35
2061 2401 2.365068 CGAACACCGCAGACGACAG 61.365 63.158 0.00 0.00 43.93 3.51
2062 2402 1.299926 GAACACCGCAGACGACAGT 60.300 57.895 0.00 0.00 43.93 3.55
2063 2403 1.548973 GAACACCGCAGACGACAGTG 61.549 60.000 0.00 0.00 43.93 3.66
2064 2404 3.406361 CACCGCAGACGACAGTGC 61.406 66.667 0.00 0.00 43.93 4.40
2065 2405 4.664677 ACCGCAGACGACAGTGCC 62.665 66.667 0.00 0.00 43.93 5.01
2066 2406 4.662961 CCGCAGACGACAGTGCCA 62.663 66.667 0.00 0.00 43.93 4.92
2067 2407 3.406361 CGCAGACGACAGTGCCAC 61.406 66.667 0.00 0.00 43.93 5.01
2068 2408 3.044305 GCAGACGACAGTGCCACC 61.044 66.667 0.00 0.00 33.29 4.61
2069 2409 2.737180 CAGACGACAGTGCCACCT 59.263 61.111 0.00 0.00 0.00 4.00
2070 2410 1.373497 CAGACGACAGTGCCACCTC 60.373 63.158 0.00 0.00 0.00 3.85
2071 2411 2.048127 GACGACAGTGCCACCTCC 60.048 66.667 0.00 0.00 0.00 4.30
2072 2412 2.524394 ACGACAGTGCCACCTCCT 60.524 61.111 0.00 0.00 0.00 3.69
2073 2413 2.262915 CGACAGTGCCACCTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
2074 2414 2.574018 CGACAGTGCCACCTCCTCA 61.574 63.158 0.00 0.00 0.00 3.86
2075 2415 1.892819 CGACAGTGCCACCTCCTCAT 61.893 60.000 0.00 0.00 0.00 2.90
2076 2416 0.107945 GACAGTGCCACCTCCTCATC 60.108 60.000 0.00 0.00 0.00 2.92
2077 2417 1.153489 CAGTGCCACCTCCTCATCG 60.153 63.158 0.00 0.00 0.00 3.84
2078 2418 2.512515 GTGCCACCTCCTCATCGC 60.513 66.667 0.00 0.00 0.00 4.58
2079 2419 4.147449 TGCCACCTCCTCATCGCG 62.147 66.667 0.00 0.00 0.00 5.87
2080 2420 4.899239 GCCACCTCCTCATCGCGG 62.899 72.222 6.13 0.00 0.00 6.46
2081 2421 3.147595 CCACCTCCTCATCGCGGA 61.148 66.667 6.13 0.00 0.00 5.54
2082 2422 2.415010 CACCTCCTCATCGCGGAG 59.585 66.667 6.13 5.75 46.11 4.63
2095 2435 3.515286 CGGAGGCGGACGAGCTAA 61.515 66.667 0.00 0.00 37.29 3.09
2096 2436 2.104530 GGAGGCGGACGAGCTAAC 59.895 66.667 0.00 0.00 37.29 2.34
2097 2437 2.104530 GAGGCGGACGAGCTAACC 59.895 66.667 0.00 0.00 37.29 2.85
2098 2438 2.678934 AGGCGGACGAGCTAACCA 60.679 61.111 0.00 0.00 37.29 3.67
2099 2439 2.017559 GAGGCGGACGAGCTAACCAT 62.018 60.000 0.00 0.00 37.29 3.55
2100 2440 1.883084 GGCGGACGAGCTAACCATG 60.883 63.158 0.00 0.00 37.29 3.66
2101 2441 1.883084 GCGGACGAGCTAACCATGG 60.883 63.158 11.19 11.19 0.00 3.66
2102 2442 1.515954 CGGACGAGCTAACCATGGT 59.484 57.895 13.00 13.00 0.00 3.55
2103 2443 0.806102 CGGACGAGCTAACCATGGTG 60.806 60.000 20.60 8.15 0.00 4.17
2104 2444 0.462047 GGACGAGCTAACCATGGTGG 60.462 60.000 20.60 15.56 45.02 4.61
2105 2445 0.535335 GACGAGCTAACCATGGTGGA 59.465 55.000 20.60 8.98 40.96 4.02
2106 2446 0.537188 ACGAGCTAACCATGGTGGAG 59.463 55.000 20.60 19.45 40.96 3.86
2107 2447 0.537188 CGAGCTAACCATGGTGGAGT 59.463 55.000 20.60 4.87 40.96 3.85
2108 2448 1.740380 CGAGCTAACCATGGTGGAGTG 60.740 57.143 20.60 8.22 40.96 3.51
2109 2449 0.620556 AGCTAACCATGGTGGAGTGG 59.379 55.000 20.60 5.65 40.96 4.00
2110 2450 1.032114 GCTAACCATGGTGGAGTGGC 61.032 60.000 20.60 12.72 40.96 5.01
2111 2451 0.744414 CTAACCATGGTGGAGTGGCG 60.744 60.000 20.60 0.00 40.96 5.69
2112 2452 2.813226 TAACCATGGTGGAGTGGCGC 62.813 60.000 20.60 0.00 40.96 6.53
2113 2453 4.415150 CCATGGTGGAGTGGCGCT 62.415 66.667 7.64 0.00 40.96 5.92
2114 2454 2.584064 CATGGTGGAGTGGCGCTA 59.416 61.111 7.64 0.00 0.00 4.26
2115 2455 1.078497 CATGGTGGAGTGGCGCTAA 60.078 57.895 7.64 0.00 0.00 3.09
2116 2456 1.078426 ATGGTGGAGTGGCGCTAAC 60.078 57.895 7.64 6.50 0.00 2.34
2117 2457 2.813908 GGTGGAGTGGCGCTAACG 60.814 66.667 7.64 0.00 44.07 3.18
2127 2467 2.954868 CGCTAACGCTACCCGCAG 60.955 66.667 0.00 0.00 41.76 5.18
2128 2468 2.493030 GCTAACGCTACCCGCAGA 59.507 61.111 0.00 0.00 41.76 4.26
2129 2469 1.153706 GCTAACGCTACCCGCAGAA 60.154 57.895 0.00 0.00 41.76 3.02
2130 2470 1.419107 GCTAACGCTACCCGCAGAAC 61.419 60.000 0.00 0.00 41.76 3.01
2131 2471 1.138047 CTAACGCTACCCGCAGAACG 61.138 60.000 0.00 0.00 41.76 3.95
2132 2472 1.865788 TAACGCTACCCGCAGAACGT 61.866 55.000 0.00 0.00 41.76 3.99
2133 2473 2.879462 CGCTACCCGCAGAACGTC 60.879 66.667 0.00 0.00 41.42 4.34
2134 2474 2.879462 GCTACCCGCAGAACGTCG 60.879 66.667 0.00 0.00 41.42 5.12
2135 2475 2.879462 CTACCCGCAGAACGTCGC 60.879 66.667 0.00 0.00 41.42 5.19
2136 2476 4.424566 TACCCGCAGAACGTCGCC 62.425 66.667 0.00 0.00 41.42 5.54
2151 2491 3.179939 GCCGACGAGAACGCCTTC 61.180 66.667 0.00 0.00 43.96 3.46
2152 2492 2.567049 CCGACGAGAACGCCTTCT 59.433 61.111 0.00 0.00 43.96 2.85
2153 2493 1.801913 CCGACGAGAACGCCTTCTG 60.802 63.158 2.46 0.00 43.96 3.02
2154 2494 1.801913 CGACGAGAACGCCTTCTGG 60.802 63.158 2.46 4.47 43.96 3.86
2155 2495 1.446272 GACGAGAACGCCTTCTGGG 60.446 63.158 11.06 3.07 43.96 4.45
2166 2506 3.713650 TTCTGGGCGAAGAGGAGG 58.286 61.111 0.00 0.00 0.00 4.30
2167 2507 1.990060 TTCTGGGCGAAGAGGAGGG 60.990 63.158 0.00 0.00 0.00 4.30
2168 2508 4.168291 CTGGGCGAAGAGGAGGGC 62.168 72.222 0.00 0.00 0.00 5.19
2170 2510 3.717294 GGGCGAAGAGGAGGGCAA 61.717 66.667 0.00 0.00 0.00 4.52
2171 2511 2.351276 GGCGAAGAGGAGGGCAAA 59.649 61.111 0.00 0.00 0.00 3.68
2172 2512 1.746991 GGCGAAGAGGAGGGCAAAG 60.747 63.158 0.00 0.00 0.00 2.77
2173 2513 2.402572 GCGAAGAGGAGGGCAAAGC 61.403 63.158 0.00 0.00 0.00 3.51
2174 2514 2.103042 CGAAGAGGAGGGCAAAGCG 61.103 63.158 0.00 0.00 0.00 4.68
2175 2515 2.360475 AAGAGGAGGGCAAAGCGC 60.360 61.111 0.00 0.00 41.91 5.92
2184 2524 4.389772 GCAAAGCGCCATGATGAC 57.610 55.556 13.66 0.00 32.94 3.06
2185 2525 1.226773 GCAAAGCGCCATGATGACC 60.227 57.895 13.66 0.00 32.94 4.02
2186 2526 1.063006 CAAAGCGCCATGATGACCG 59.937 57.895 2.29 0.00 0.00 4.79
2187 2527 2.114670 AAAGCGCCATGATGACCGG 61.115 57.895 2.29 0.00 0.00 5.28
2188 2528 4.552365 AGCGCCATGATGACCGGG 62.552 66.667 6.32 0.00 0.00 5.73
2192 2532 3.860605 CCATGATGACCGGGCGGA 61.861 66.667 6.32 0.00 38.96 5.54
2193 2533 2.427320 CATGATGACCGGGCGGAT 59.573 61.111 6.32 0.00 38.96 4.18
2194 2534 1.671166 CATGATGACCGGGCGGATA 59.329 57.895 6.32 0.00 38.96 2.59
2195 2535 0.390340 CATGATGACCGGGCGGATAG 60.390 60.000 6.32 0.00 38.96 2.08
2196 2536 1.544825 ATGATGACCGGGCGGATAGG 61.545 60.000 6.32 0.00 38.96 2.57
2197 2537 3.591254 GATGACCGGGCGGATAGGC 62.591 68.421 6.32 0.00 45.91 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.494059 CACCTGTGACAATCCGAGTTT 58.506 47.619 0.00 0.00 0.00 2.66
42 43 4.720902 TGACATGCCGCCCACCTG 62.721 66.667 0.00 0.00 0.00 4.00
64 65 1.340211 TGGGTTCAACTTGTCAACCGT 60.340 47.619 6.38 0.00 40.59 4.83
388 464 2.028385 TGATGCATCATCCTCCTCATCG 60.028 50.000 25.42 0.00 39.87 3.84
411 490 1.661341 GCTTCTCTTGCCGTCATCAT 58.339 50.000 0.00 0.00 0.00 2.45
480 559 5.646606 TCTTTTCGGTTTTGTCTTTCTTGG 58.353 37.500 0.00 0.00 0.00 3.61
609 710 2.937285 AACCTCCTCTCCTCGGCCT 61.937 63.158 0.00 0.00 0.00 5.19
668 832 1.209019 AGTTCGCTCCTCATTGCTCAT 59.791 47.619 0.00 0.00 0.00 2.90
744 908 0.733150 GACATACTCCTTTTGCGCCC 59.267 55.000 4.18 0.00 0.00 6.13
881 1120 2.802792 CATGCCTCCCATTGCACG 59.197 61.111 0.00 0.00 40.88 5.34
920 1167 4.235762 CCATAGCGTCGGTGGGGG 62.236 72.222 7.30 1.88 0.00 5.40
921 1168 4.910585 GCCATAGCGTCGGTGGGG 62.911 72.222 7.30 9.35 33.58 4.96
922 1169 4.910585 GGCCATAGCGTCGGTGGG 62.911 72.222 7.30 9.71 41.24 4.61
923 1170 4.155733 TGGCCATAGCGTCGGTGG 62.156 66.667 0.00 1.50 41.24 4.61
924 1171 2.890474 GTGGCCATAGCGTCGGTG 60.890 66.667 9.72 0.00 41.24 4.94
925 1172 4.157120 GGTGGCCATAGCGTCGGT 62.157 66.667 9.72 1.19 41.24 4.69
926 1173 3.460672 ATGGTGGCCATAGCGTCGG 62.461 63.158 9.72 0.00 43.19 4.79
927 1174 2.108976 ATGGTGGCCATAGCGTCG 59.891 61.111 9.72 0.00 43.19 5.12
1265 1530 7.296628 AGTTCATGCCCACAAGTTTAAAATA 57.703 32.000 0.00 0.00 0.00 1.40
1384 1682 0.039617 AGCAGCGCGTAAAAATGCAA 60.040 45.000 16.43 0.00 39.34 4.08
1543 1883 2.036958 TACCGCCATTGTTGGAGATG 57.963 50.000 0.00 0.00 46.92 2.90
1544 1884 2.799126 TTACCGCCATTGTTGGAGAT 57.201 45.000 0.00 0.00 46.92 2.75
1545 1885 2.570415 TTTACCGCCATTGTTGGAGA 57.430 45.000 0.00 0.00 46.92 3.71
1546 1886 3.651803 TTTTTACCGCCATTGTTGGAG 57.348 42.857 0.00 0.00 46.92 3.86
1575 1915 3.181527 GCGTTAATACTCACGTTTCCCAC 60.182 47.826 0.00 0.00 38.70 4.61
1576 1916 2.995258 GCGTTAATACTCACGTTTCCCA 59.005 45.455 0.00 0.00 38.70 4.37
1577 1917 2.028404 CGCGTTAATACTCACGTTTCCC 59.972 50.000 0.00 0.00 38.70 3.97
1578 1918 2.533561 GCGCGTTAATACTCACGTTTCC 60.534 50.000 8.43 0.00 38.70 3.13
1579 1919 2.675450 GCGCGTTAATACTCACGTTTC 58.325 47.619 8.43 0.00 38.70 2.78
1580 1920 1.058129 CGCGCGTTAATACTCACGTTT 59.942 47.619 24.19 0.00 38.70 3.60
1581 1921 0.636733 CGCGCGTTAATACTCACGTT 59.363 50.000 24.19 0.00 38.70 3.99
1582 1922 1.736249 GCGCGCGTTAATACTCACGT 61.736 55.000 32.35 0.00 38.70 4.49
1583 1923 1.085101 GCGCGCGTTAATACTCACG 60.085 57.895 32.35 0.00 39.49 4.35
1584 1924 1.085101 CGCGCGCGTTAATACTCAC 60.085 57.895 42.49 9.24 34.35 3.51
1585 1925 0.797629 TTCGCGCGCGTTAATACTCA 60.798 50.000 46.54 26.14 40.74 3.41
1586 1926 0.112266 CTTCGCGCGCGTTAATACTC 60.112 55.000 46.54 10.84 40.74 2.59
1587 1927 1.915093 CTTCGCGCGCGTTAATACT 59.085 52.632 46.54 0.00 40.74 2.12
1588 1928 1.713365 GCTTCGCGCGCGTTAATAC 60.713 57.895 46.54 28.67 40.74 1.89
1589 1929 2.616689 GCTTCGCGCGCGTTAATA 59.383 55.556 46.54 29.22 40.74 0.98
1606 1946 4.776953 CTGAAGCGCGCGAAACCG 62.777 66.667 37.18 14.36 0.00 4.44
1631 1971 2.511600 CGTGTGCCGGGATCTTCC 60.512 66.667 2.18 0.00 35.23 3.46
1640 1980 2.613506 GGTCTTTTCCCGTGTGCCG 61.614 63.158 0.00 0.00 0.00 5.69
1641 1981 2.613506 CGGTCTTTTCCCGTGTGCC 61.614 63.158 0.00 0.00 40.59 5.01
1642 1982 2.943653 CGGTCTTTTCCCGTGTGC 59.056 61.111 0.00 0.00 40.59 4.57
1648 1988 2.975799 TGCGCACGGTCTTTTCCC 60.976 61.111 5.66 0.00 0.00 3.97
1649 1989 2.251371 GTGCGCACGGTCTTTTCC 59.749 61.111 26.77 0.00 0.00 3.13
1650 1990 2.251371 GGTGCGCACGGTCTTTTC 59.749 61.111 32.35 13.60 0.00 2.29
1651 1991 3.645975 CGGTGCGCACGGTCTTTT 61.646 61.111 32.70 0.00 0.00 2.27
1652 1992 4.595538 TCGGTGCGCACGGTCTTT 62.596 61.111 36.82 0.00 33.91 2.52
1653 1993 4.595538 TTCGGTGCGCACGGTCTT 62.596 61.111 36.82 0.00 33.91 3.01
1654 1994 4.595538 TTTCGGTGCGCACGGTCT 62.596 61.111 36.82 0.00 33.91 3.85
1655 1995 3.170810 TTTTTCGGTGCGCACGGTC 62.171 57.895 36.82 22.85 33.91 4.79
1656 1996 3.203412 TTTTTCGGTGCGCACGGT 61.203 55.556 36.82 0.00 33.91 4.83
1657 1997 2.724358 GTTTTTCGGTGCGCACGG 60.724 61.111 34.54 34.54 0.00 4.94
1658 1998 2.724358 GGTTTTTCGGTGCGCACG 60.724 61.111 32.35 26.14 0.00 5.34
1659 1999 2.724358 CGGTTTTTCGGTGCGCAC 60.724 61.111 32.15 32.15 0.00 5.34
1660 2000 3.955101 CCGGTTTTTCGGTGCGCA 61.955 61.111 5.66 5.66 44.60 6.09
1667 2007 4.398598 CGCTGGGCCGGTTTTTCG 62.399 66.667 15.16 4.45 0.00 3.46
1668 2008 4.717629 GCGCTGGGCCGGTTTTTC 62.718 66.667 15.16 0.00 34.80 2.29
1676 2016 2.989055 TTTATAGAGCGCGCTGGGCC 62.989 60.000 41.82 24.45 42.59 5.80
1677 2017 1.157870 TTTTATAGAGCGCGCTGGGC 61.158 55.000 41.82 24.86 41.91 5.36
1678 2018 0.582005 GTTTTATAGAGCGCGCTGGG 59.418 55.000 41.82 0.00 0.00 4.45
1679 2019 1.004927 GTGTTTTATAGAGCGCGCTGG 60.005 52.381 41.82 0.00 0.00 4.85
1680 2020 1.331161 CGTGTTTTATAGAGCGCGCTG 60.331 52.381 41.82 15.83 0.00 5.18
1681 2021 0.921347 CGTGTTTTATAGAGCGCGCT 59.079 50.000 37.28 37.28 0.00 5.92
1682 2022 3.399350 CGTGTTTTATAGAGCGCGC 57.601 52.632 26.66 26.66 0.00 6.86
1683 2023 3.399350 GCGTGTTTTATAGAGCGCG 57.601 52.632 0.00 0.00 35.71 6.86
1684 2024 3.399350 CGCGTGTTTTATAGAGCGC 57.601 52.632 0.00 0.00 41.08 5.92
1686 2026 1.267383 GGCACGCGTGTTTTATAGAGC 60.267 52.381 36.80 20.18 0.00 4.09
1687 2027 2.713927 GGCACGCGTGTTTTATAGAG 57.286 50.000 36.80 11.22 0.00 2.43
1702 2042 3.129913 GATTGGCTGGCATCGGCAC 62.130 63.158 4.22 0.00 46.76 5.01
1703 2043 2.829914 GATTGGCTGGCATCGGCA 60.830 61.111 4.22 0.00 46.76 5.69
1704 2044 2.829914 TGATTGGCTGGCATCGGC 60.830 61.111 4.22 0.00 44.31 5.54
1705 2045 1.153107 TCTGATTGGCTGGCATCGG 60.153 57.895 4.22 9.92 0.00 4.18
1706 2046 0.745486 TGTCTGATTGGCTGGCATCG 60.745 55.000 4.22 2.86 0.00 3.84
1707 2047 0.737219 GTGTCTGATTGGCTGGCATC 59.263 55.000 4.22 5.79 32.54 3.91
1708 2048 0.330604 AGTGTCTGATTGGCTGGCAT 59.669 50.000 4.22 0.00 32.54 4.40
1709 2049 0.321919 GAGTGTCTGATTGGCTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
1710 2050 1.364626 CGAGTGTCTGATTGGCTGGC 61.365 60.000 0.00 0.00 0.00 4.85
1711 2051 0.247460 TCGAGTGTCTGATTGGCTGG 59.753 55.000 0.00 0.00 0.00 4.85
1712 2052 1.638133 CTCGAGTGTCTGATTGGCTG 58.362 55.000 3.62 0.00 0.00 4.85
1713 2053 0.108424 GCTCGAGTGTCTGATTGGCT 60.108 55.000 15.13 0.00 0.00 4.75
1714 2054 1.416813 CGCTCGAGTGTCTGATTGGC 61.417 60.000 17.90 0.00 0.00 4.52
1715 2055 1.416813 GCGCTCGAGTGTCTGATTGG 61.417 60.000 25.72 0.00 0.00 3.16
1716 2056 0.457509 AGCGCTCGAGTGTCTGATTG 60.458 55.000 25.72 1.45 0.00 2.67
1717 2057 0.179150 GAGCGCTCGAGTGTCTGATT 60.179 55.000 23.61 6.43 0.00 2.57
1718 2058 1.308783 TGAGCGCTCGAGTGTCTGAT 61.309 55.000 30.75 8.41 0.00 2.90
1719 2059 1.966451 TGAGCGCTCGAGTGTCTGA 60.966 57.895 30.75 15.04 0.00 3.27
1720 2060 1.799519 GTGAGCGCTCGAGTGTCTG 60.800 63.158 30.75 7.06 0.00 3.51
1721 2061 2.261586 TGTGAGCGCTCGAGTGTCT 61.262 57.895 30.75 21.80 0.00 3.41
1722 2062 2.083522 GTGTGAGCGCTCGAGTGTC 61.084 63.158 30.75 20.51 0.00 3.67
1723 2063 2.049985 GTGTGAGCGCTCGAGTGT 60.050 61.111 30.75 13.45 0.00 3.55
1724 2064 2.807045 GGTGTGAGCGCTCGAGTG 60.807 66.667 30.75 21.61 0.00 3.51
1725 2065 4.406173 CGGTGTGAGCGCTCGAGT 62.406 66.667 30.75 0.00 30.39 4.18
1734 2074 2.804828 GAAGAAGGGGGCGGTGTGAG 62.805 65.000 0.00 0.00 0.00 3.51
1735 2075 2.852075 AAGAAGGGGGCGGTGTGA 60.852 61.111 0.00 0.00 0.00 3.58
1736 2076 2.359975 GAAGAAGGGGGCGGTGTG 60.360 66.667 0.00 0.00 0.00 3.82
1737 2077 3.647771 GGAAGAAGGGGGCGGTGT 61.648 66.667 0.00 0.00 0.00 4.16
1738 2078 3.330720 AGGAAGAAGGGGGCGGTG 61.331 66.667 0.00 0.00 0.00 4.94
1739 2079 3.009714 GAGGAAGAAGGGGGCGGT 61.010 66.667 0.00 0.00 0.00 5.68
1740 2080 4.162690 CGAGGAAGAAGGGGGCGG 62.163 72.222 0.00 0.00 0.00 6.13
1741 2081 4.840005 GCGAGGAAGAAGGGGGCG 62.840 72.222 0.00 0.00 0.00 6.13
1742 2082 2.949705 GATGCGAGGAAGAAGGGGGC 62.950 65.000 0.00 0.00 0.00 5.80
1743 2083 1.147153 GATGCGAGGAAGAAGGGGG 59.853 63.158 0.00 0.00 0.00 5.40
1744 2084 1.147153 GGATGCGAGGAAGAAGGGG 59.853 63.158 0.00 0.00 0.00 4.79
1745 2085 1.227380 CGGATGCGAGGAAGAAGGG 60.227 63.158 0.00 0.00 0.00 3.95
1746 2086 1.227380 CCGGATGCGAGGAAGAAGG 60.227 63.158 8.71 0.00 0.00 3.46
1747 2087 0.807667 CACCGGATGCGAGGAAGAAG 60.808 60.000 9.46 0.00 0.00 2.85
1748 2088 1.218047 CACCGGATGCGAGGAAGAA 59.782 57.895 9.46 0.00 0.00 2.52
1749 2089 2.892640 CACCGGATGCGAGGAAGA 59.107 61.111 9.46 0.00 0.00 2.87
1750 2090 2.892425 GCACCGGATGCGAGGAAG 60.892 66.667 9.46 0.00 46.55 3.46
1845 2185 1.227263 TAGAATGCGCCGGAAGAGC 60.227 57.895 5.05 4.99 35.63 4.09
1846 2186 0.179111 TGTAGAATGCGCCGGAAGAG 60.179 55.000 5.05 0.00 0.00 2.85
1847 2187 0.459585 GTGTAGAATGCGCCGGAAGA 60.460 55.000 5.05 0.00 0.00 2.87
1848 2188 1.752501 CGTGTAGAATGCGCCGGAAG 61.753 60.000 5.05 0.00 0.00 3.46
1849 2189 1.807981 CGTGTAGAATGCGCCGGAA 60.808 57.895 5.05 0.00 0.00 4.30
1850 2190 2.202690 CGTGTAGAATGCGCCGGA 60.203 61.111 5.05 0.00 0.00 5.14
1851 2191 2.508439 ACGTGTAGAATGCGCCGG 60.508 61.111 4.18 0.00 0.00 6.13
1852 2192 2.695055 CACGTGTAGAATGCGCCG 59.305 61.111 7.58 0.00 0.00 6.46
1853 2193 2.399611 GCACGTGTAGAATGCGCC 59.600 61.111 18.38 0.00 0.00 6.53
1856 2196 0.640768 GAGACGCACGTGTAGAATGC 59.359 55.000 18.38 0.00 35.96 3.56
1857 2197 0.907837 CGAGACGCACGTGTAGAATG 59.092 55.000 18.38 3.19 0.00 2.67
1858 2198 0.179171 CCGAGACGCACGTGTAGAAT 60.179 55.000 18.38 6.08 0.00 2.40
1859 2199 1.208358 CCGAGACGCACGTGTAGAA 59.792 57.895 18.38 0.00 0.00 2.10
1860 2200 1.904852 GACCGAGACGCACGTGTAGA 61.905 60.000 18.38 0.00 0.00 2.59
1861 2201 1.511464 GACCGAGACGCACGTGTAG 60.511 63.158 18.38 14.07 0.00 2.74
1862 2202 1.904852 GAGACCGAGACGCACGTGTA 61.905 60.000 18.38 0.00 0.00 2.90
1863 2203 3.251318 GAGACCGAGACGCACGTGT 62.251 63.158 18.38 0.00 0.00 4.49
1864 2204 2.502080 GAGACCGAGACGCACGTG 60.502 66.667 12.28 12.28 0.00 4.49
1865 2205 2.967473 CTGAGACCGAGACGCACGT 61.967 63.158 0.00 0.00 0.00 4.49
1866 2206 2.202362 CTGAGACCGAGACGCACG 60.202 66.667 0.00 0.00 0.00 5.34
1867 2207 1.863662 TTCCTGAGACCGAGACGCAC 61.864 60.000 0.00 0.00 0.00 5.34
1868 2208 1.587043 CTTCCTGAGACCGAGACGCA 61.587 60.000 0.00 0.00 0.00 5.24
1869 2209 1.137825 CTTCCTGAGACCGAGACGC 59.862 63.158 0.00 0.00 0.00 5.19
1870 2210 0.882474 AACTTCCTGAGACCGAGACG 59.118 55.000 0.00 0.00 0.00 4.18
1871 2211 1.135632 CGAACTTCCTGAGACCGAGAC 60.136 57.143 0.00 0.00 0.00 3.36
1872 2212 1.166129 CGAACTTCCTGAGACCGAGA 58.834 55.000 0.00 0.00 0.00 4.04
1873 2213 1.131504 CTCGAACTTCCTGAGACCGAG 59.868 57.143 0.00 0.00 40.88 4.63
1874 2214 1.166129 CTCGAACTTCCTGAGACCGA 58.834 55.000 0.00 0.00 33.99 4.69
1875 2215 1.166129 TCTCGAACTTCCTGAGACCG 58.834 55.000 0.00 0.00 34.00 4.79
1878 2218 1.166129 CGGTCTCGAACTTCCTGAGA 58.834 55.000 0.00 0.00 39.00 3.27
1879 2219 0.456995 GCGGTCTCGAACTTCCTGAG 60.457 60.000 0.00 0.00 39.00 3.35
1880 2220 1.585006 GCGGTCTCGAACTTCCTGA 59.415 57.895 0.00 0.00 39.00 3.86
1881 2221 1.801913 CGCGGTCTCGAACTTCCTG 60.802 63.158 0.00 0.00 39.00 3.86
1882 2222 2.567049 CGCGGTCTCGAACTTCCT 59.433 61.111 0.00 0.00 39.00 3.36
1883 2223 3.179939 GCGCGGTCTCGAACTTCC 61.180 66.667 8.83 0.00 39.00 3.46
1884 2224 1.945776 CTTGCGCGGTCTCGAACTTC 61.946 60.000 8.83 0.00 39.00 3.01
1885 2225 2.022129 CTTGCGCGGTCTCGAACTT 61.022 57.895 8.83 0.00 39.00 2.66
1886 2226 2.430921 CTTGCGCGGTCTCGAACT 60.431 61.111 8.83 0.00 39.00 3.01
1887 2227 2.430244 TCTTGCGCGGTCTCGAAC 60.430 61.111 8.83 0.00 39.00 3.95
1888 2228 2.126463 CTCTTGCGCGGTCTCGAA 60.126 61.111 8.83 0.00 39.00 3.71
1889 2229 4.116328 CCTCTTGCGCGGTCTCGA 62.116 66.667 8.83 0.00 39.00 4.04
1917 2257 1.445582 CCAAGCTCCCACGTCGTAC 60.446 63.158 0.00 0.00 0.00 3.67
1918 2258 2.967397 CCAAGCTCCCACGTCGTA 59.033 61.111 0.00 0.00 0.00 3.43
1919 2259 4.681978 GCCAAGCTCCCACGTCGT 62.682 66.667 0.00 0.00 0.00 4.34
1938 2278 4.154347 GAGCGTGGCCTGGAGAGG 62.154 72.222 3.32 0.00 43.19 3.69
1939 2279 4.504916 CGAGCGTGGCCTGGAGAG 62.505 72.222 3.32 0.00 0.00 3.20
1944 2284 2.906182 TTATCTGCGAGCGTGGCCTG 62.906 60.000 3.32 0.00 0.00 4.85
1945 2285 2.238847 TTTATCTGCGAGCGTGGCCT 62.239 55.000 3.32 0.00 0.00 5.19
1946 2286 1.813753 TTTATCTGCGAGCGTGGCC 60.814 57.895 0.00 0.00 0.00 5.36
1947 2287 1.084370 AGTTTATCTGCGAGCGTGGC 61.084 55.000 0.00 0.00 0.00 5.01
1948 2288 1.324736 GAAGTTTATCTGCGAGCGTGG 59.675 52.381 0.00 0.00 0.00 4.94
1949 2289 2.703190 GAAGTTTATCTGCGAGCGTG 57.297 50.000 0.00 0.00 0.00 5.34
1955 2295 1.249491 CGTCGTCGAAGTTTATCTGCG 59.751 52.381 0.00 0.00 45.93 5.18
1956 2296 1.007319 GCGTCGTCGAAGTTTATCTGC 60.007 52.381 6.17 0.00 39.71 4.26
1957 2297 1.249491 CGCGTCGTCGAAGTTTATCTG 59.751 52.381 6.17 0.00 39.71 2.90
1958 2298 1.531912 CGCGTCGTCGAAGTTTATCT 58.468 50.000 6.17 0.00 39.71 1.98
1959 2299 0.045253 GCGCGTCGTCGAAGTTTATC 60.045 55.000 8.43 0.00 39.71 1.75
1960 2300 0.730155 TGCGCGTCGTCGAAGTTTAT 60.730 50.000 8.43 0.00 39.71 1.40
1961 2301 1.332180 CTGCGCGTCGTCGAAGTTTA 61.332 55.000 8.43 0.00 39.71 2.01
1962 2302 2.645510 CTGCGCGTCGTCGAAGTTT 61.646 57.895 8.43 0.00 39.71 2.66
1963 2303 3.097728 CTGCGCGTCGTCGAAGTT 61.098 61.111 8.43 0.00 39.71 2.66
1964 2304 4.021631 TCTGCGCGTCGTCGAAGT 62.022 61.111 8.43 0.00 36.52 3.01
1965 2305 3.524759 GTCTGCGCGTCGTCGAAG 61.525 66.667 8.43 10.96 39.71 3.79
1986 2326 4.711949 AGGTTCTGCGCCTGCTGG 62.712 66.667 4.18 5.03 43.34 4.85
1987 2327 3.123620 GAGGTTCTGCGCCTGCTG 61.124 66.667 4.18 0.00 43.34 4.41
1988 2328 4.749310 CGAGGTTCTGCGCCTGCT 62.749 66.667 4.18 0.00 43.34 4.24
1994 2334 4.821589 GAGGGGCGAGGTTCTGCG 62.822 72.222 0.00 0.00 0.00 5.18
1995 2335 4.475135 GGAGGGGCGAGGTTCTGC 62.475 72.222 0.00 0.00 0.00 4.26
1996 2336 4.148825 CGGAGGGGCGAGGTTCTG 62.149 72.222 0.00 0.00 0.00 3.02
1997 2337 4.698625 ACGGAGGGGCGAGGTTCT 62.699 66.667 0.00 0.00 0.00 3.01
1998 2338 3.703127 AACGGAGGGGCGAGGTTC 61.703 66.667 0.00 0.00 0.00 3.62
1999 2339 4.016706 CAACGGAGGGGCGAGGTT 62.017 66.667 0.00 0.00 0.00 3.50
2005 2345 3.718210 CTAGACGCAACGGAGGGGC 62.718 68.421 0.00 0.00 0.00 5.80
2006 2346 1.033746 TACTAGACGCAACGGAGGGG 61.034 60.000 0.00 0.00 0.00 4.79
2007 2347 0.813184 TTACTAGACGCAACGGAGGG 59.187 55.000 0.00 0.00 0.00 4.30
2008 2348 1.468736 GGTTACTAGACGCAACGGAGG 60.469 57.143 0.00 0.00 0.00 4.30
2009 2349 1.792993 CGGTTACTAGACGCAACGGAG 60.793 57.143 0.00 0.00 0.00 4.63
2010 2350 0.168788 CGGTTACTAGACGCAACGGA 59.831 55.000 0.00 0.00 0.00 4.69
2011 2351 0.168788 TCGGTTACTAGACGCAACGG 59.831 55.000 0.00 0.29 0.00 4.44
2012 2352 1.253999 GTCGGTTACTAGACGCAACG 58.746 55.000 0.00 0.00 0.00 4.10
2018 2358 2.220593 CGATCCTCGTCGGTTACTAGAC 59.779 54.545 0.00 2.54 37.94 2.59
2019 2359 2.477825 CGATCCTCGTCGGTTACTAGA 58.522 52.381 0.00 0.00 37.94 2.43
2020 2360 2.945798 CGATCCTCGTCGGTTACTAG 57.054 55.000 0.00 0.00 37.94 2.57
2031 2371 1.542544 GGTGTTCGTTACGATCCTCG 58.457 55.000 8.67 0.00 46.93 4.63
2032 2372 1.542544 CGGTGTTCGTTACGATCCTC 58.457 55.000 8.67 3.61 35.23 3.71
2033 2373 0.457337 GCGGTGTTCGTTACGATCCT 60.457 55.000 8.67 0.00 41.72 3.24
2034 2374 0.733566 TGCGGTGTTCGTTACGATCC 60.734 55.000 8.67 10.65 41.72 3.36
2035 2375 0.638746 CTGCGGTGTTCGTTACGATC 59.361 55.000 8.67 8.67 41.72 3.69
2036 2376 0.241749 TCTGCGGTGTTCGTTACGAT 59.758 50.000 8.67 0.00 41.72 3.73
2037 2377 0.661187 GTCTGCGGTGTTCGTTACGA 60.661 55.000 2.33 2.33 41.72 3.43
2038 2378 1.771044 GTCTGCGGTGTTCGTTACG 59.229 57.895 0.00 0.00 41.72 3.18
2039 2379 0.661187 TCGTCTGCGGTGTTCGTTAC 60.661 55.000 0.00 0.00 41.72 2.50
2040 2380 0.661187 GTCGTCTGCGGTGTTCGTTA 60.661 55.000 0.00 0.00 41.72 3.18
2041 2381 1.947642 GTCGTCTGCGGTGTTCGTT 60.948 57.895 0.00 0.00 41.72 3.85
2042 2382 2.354305 GTCGTCTGCGGTGTTCGT 60.354 61.111 0.00 0.00 41.72 3.85
2043 2383 2.354188 TGTCGTCTGCGGTGTTCG 60.354 61.111 0.00 0.00 42.76 3.95
2044 2384 1.299926 ACTGTCGTCTGCGGTGTTC 60.300 57.895 0.00 0.00 38.89 3.18
2045 2385 1.591594 CACTGTCGTCTGCGGTGTT 60.592 57.895 0.00 0.00 38.16 3.32
2046 2386 2.027605 CACTGTCGTCTGCGGTGT 59.972 61.111 0.00 0.00 38.16 4.16
2047 2387 3.406361 GCACTGTCGTCTGCGGTG 61.406 66.667 0.00 0.00 43.87 4.94
2048 2388 4.664677 GGCACTGTCGTCTGCGGT 62.665 66.667 0.00 0.00 38.89 5.68
2049 2389 4.662961 TGGCACTGTCGTCTGCGG 62.663 66.667 0.00 0.00 38.89 5.69
2050 2390 3.406361 GTGGCACTGTCGTCTGCG 61.406 66.667 11.13 0.00 39.92 5.18
2051 2391 3.044305 GGTGGCACTGTCGTCTGC 61.044 66.667 18.45 0.00 0.00 4.26
2052 2392 1.373497 GAGGTGGCACTGTCGTCTG 60.373 63.158 18.45 0.00 0.00 3.51
2053 2393 2.574955 GGAGGTGGCACTGTCGTCT 61.575 63.158 18.45 4.42 0.00 4.18
2054 2394 2.048127 GGAGGTGGCACTGTCGTC 60.048 66.667 18.45 6.75 0.00 4.20
2055 2395 2.524394 AGGAGGTGGCACTGTCGT 60.524 61.111 18.45 12.92 0.00 4.34
2056 2396 1.892819 ATGAGGAGGTGGCACTGTCG 61.893 60.000 18.45 0.00 0.00 4.35
2057 2397 0.107945 GATGAGGAGGTGGCACTGTC 60.108 60.000 18.45 14.05 0.00 3.51
2058 2398 1.892819 CGATGAGGAGGTGGCACTGT 61.893 60.000 18.45 5.06 0.00 3.55
2059 2399 1.153489 CGATGAGGAGGTGGCACTG 60.153 63.158 18.45 0.00 0.00 3.66
2060 2400 3.023949 GCGATGAGGAGGTGGCACT 62.024 63.158 18.45 3.24 0.00 4.40
2061 2401 2.512515 GCGATGAGGAGGTGGCAC 60.513 66.667 9.70 9.70 0.00 5.01
2062 2402 4.147449 CGCGATGAGGAGGTGGCA 62.147 66.667 0.00 0.00 0.00 4.92
2063 2403 4.899239 CCGCGATGAGGAGGTGGC 62.899 72.222 8.23 0.00 0.00 5.01
2064 2404 3.147595 TCCGCGATGAGGAGGTGG 61.148 66.667 8.23 0.00 33.19 4.61
2078 2418 3.515286 TTAGCTCGTCCGCCTCCG 61.515 66.667 0.00 0.00 0.00 4.63
2079 2419 2.104530 GTTAGCTCGTCCGCCTCC 59.895 66.667 0.00 0.00 0.00 4.30
2080 2420 2.017559 ATGGTTAGCTCGTCCGCCTC 62.018 60.000 0.00 0.00 0.00 4.70
2081 2421 2.058595 ATGGTTAGCTCGTCCGCCT 61.059 57.895 0.00 0.00 0.00 5.52
2082 2422 1.883084 CATGGTTAGCTCGTCCGCC 60.883 63.158 0.00 0.00 0.00 6.13
2083 2423 1.883084 CCATGGTTAGCTCGTCCGC 60.883 63.158 2.57 0.00 0.00 5.54
2084 2424 0.806102 CACCATGGTTAGCTCGTCCG 60.806 60.000 16.84 0.00 0.00 4.79
2085 2425 0.462047 CCACCATGGTTAGCTCGTCC 60.462 60.000 16.84 0.00 31.35 4.79
2086 2426 0.535335 TCCACCATGGTTAGCTCGTC 59.465 55.000 16.84 0.00 39.03 4.20
2087 2427 0.537188 CTCCACCATGGTTAGCTCGT 59.463 55.000 16.84 0.00 39.03 4.18
2088 2428 0.537188 ACTCCACCATGGTTAGCTCG 59.463 55.000 16.84 2.14 39.03 5.03
2089 2429 1.407437 CCACTCCACCATGGTTAGCTC 60.407 57.143 16.84 0.00 39.03 4.09
2090 2430 0.620556 CCACTCCACCATGGTTAGCT 59.379 55.000 16.84 4.22 39.03 3.32
2091 2431 1.032114 GCCACTCCACCATGGTTAGC 61.032 60.000 16.84 8.17 39.03 3.09
2092 2432 0.744414 CGCCACTCCACCATGGTTAG 60.744 60.000 16.84 17.91 39.03 2.34
2093 2433 1.298340 CGCCACTCCACCATGGTTA 59.702 57.895 16.84 5.49 39.03 2.85
2094 2434 2.034066 CGCCACTCCACCATGGTT 59.966 61.111 16.84 0.00 39.03 3.67
2095 2435 4.722700 GCGCCACTCCACCATGGT 62.723 66.667 13.00 13.00 39.03 3.55
2096 2436 2.535485 TTAGCGCCACTCCACCATGG 62.535 60.000 11.19 11.19 39.43 3.66
2097 2437 1.078497 TTAGCGCCACTCCACCATG 60.078 57.895 2.29 0.00 0.00 3.66
2098 2438 1.078426 GTTAGCGCCACTCCACCAT 60.078 57.895 2.29 0.00 0.00 3.55
2099 2439 2.345991 GTTAGCGCCACTCCACCA 59.654 61.111 2.29 0.00 0.00 4.17
2100 2440 2.813908 CGTTAGCGCCACTCCACC 60.814 66.667 2.29 0.00 0.00 4.61
2117 2457 2.879462 CGACGTTCTGCGGGTAGC 60.879 66.667 0.00 0.00 46.52 3.58
2118 2458 2.879462 GCGACGTTCTGCGGGTAG 60.879 66.667 0.00 0.00 46.52 3.18
2119 2459 4.424566 GGCGACGTTCTGCGGGTA 62.425 66.667 0.00 0.00 46.52 3.69
2134 2474 3.179939 GAAGGCGTTCTCGTCGGC 61.180 66.667 11.82 3.85 46.96 5.54
2135 2475 1.801913 CAGAAGGCGTTCTCGTCGG 60.802 63.158 18.42 4.03 46.96 4.79
2136 2476 1.801913 CCAGAAGGCGTTCTCGTCG 60.802 63.158 18.42 7.82 46.96 5.12
2137 2477 1.446272 CCCAGAAGGCGTTCTCGTC 60.446 63.158 18.42 0.00 41.40 4.20
2138 2478 2.657237 CCCAGAAGGCGTTCTCGT 59.343 61.111 18.42 0.00 41.40 4.18
2149 2489 1.990060 CCCTCCTCTTCGCCCAGAA 60.990 63.158 0.00 0.00 37.31 3.02
2150 2490 2.364317 CCCTCCTCTTCGCCCAGA 60.364 66.667 0.00 0.00 0.00 3.86
2151 2491 4.168291 GCCCTCCTCTTCGCCCAG 62.168 72.222 0.00 0.00 0.00 4.45
2153 2493 3.268103 TTTGCCCTCCTCTTCGCCC 62.268 63.158 0.00 0.00 0.00 6.13
2154 2494 1.746991 CTTTGCCCTCCTCTTCGCC 60.747 63.158 0.00 0.00 0.00 5.54
2155 2495 2.402572 GCTTTGCCCTCCTCTTCGC 61.403 63.158 0.00 0.00 0.00 4.70
2156 2496 2.103042 CGCTTTGCCCTCCTCTTCG 61.103 63.158 0.00 0.00 0.00 3.79
2157 2497 2.402572 GCGCTTTGCCCTCCTCTTC 61.403 63.158 0.00 0.00 37.76 2.87
2158 2498 2.360475 GCGCTTTGCCCTCCTCTT 60.360 61.111 0.00 0.00 37.76 2.85
2167 2507 1.226773 GGTCATCATGGCGCTTTGC 60.227 57.895 7.64 0.00 45.38 3.68
2168 2508 1.063006 CGGTCATCATGGCGCTTTG 59.937 57.895 7.64 5.48 0.00 2.77
2169 2509 2.114670 CCGGTCATCATGGCGCTTT 61.115 57.895 7.64 0.00 0.00 3.51
2170 2510 2.514592 CCGGTCATCATGGCGCTT 60.515 61.111 7.64 0.00 0.00 4.68
2171 2511 4.552365 CCCGGTCATCATGGCGCT 62.552 66.667 7.64 0.00 0.00 5.92
2175 2515 1.826340 TATCCGCCCGGTCATCATGG 61.826 60.000 6.61 0.00 36.47 3.66
2176 2516 0.390340 CTATCCGCCCGGTCATCATG 60.390 60.000 6.61 0.00 36.47 3.07
2177 2517 1.544825 CCTATCCGCCCGGTCATCAT 61.545 60.000 6.61 0.00 36.47 2.45
2178 2518 2.207229 CCTATCCGCCCGGTCATCA 61.207 63.158 6.61 0.00 36.47 3.07
2179 2519 2.657237 CCTATCCGCCCGGTCATC 59.343 66.667 6.61 0.00 36.47 2.92
2180 2520 3.626924 GCCTATCCGCCCGGTCAT 61.627 66.667 6.61 0.00 36.47 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.