Multiple sequence alignment - TraesCS5A01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G283400 chr5A 100.000 5516 0 0 1 5516 491590285 491584770 0.000000e+00 10187.0
1 TraesCS5A01G283400 chr5A 91.262 1236 62 24 1519 2730 491572996 491571783 0.000000e+00 1642.0
2 TraesCS5A01G283400 chr5A 91.808 647 31 6 2746 3370 491571797 491571151 0.000000e+00 881.0
3 TraesCS5A01G283400 chr5A 86.189 572 48 10 933 1500 491573595 491573051 1.710000e-164 590.0
4 TraesCS5A01G283400 chr5A 89.260 419 36 4 4108 4520 491570841 491570426 2.950000e-142 516.0
5 TraesCS5A01G283400 chr5A 98.917 277 3 0 5240 5516 491569920 491569644 3.840000e-136 496.0
6 TraesCS5A01G283400 chr5A 88.710 310 26 3 3704 4004 491571153 491570844 2.430000e-98 370.0
7 TraesCS5A01G283400 chr5A 91.176 272 24 0 4970 5241 510277443 510277714 2.430000e-98 370.0
8 TraesCS5A01G283400 chr5A 89.706 272 26 1 4970 5241 11233724 11233993 4.090000e-91 346.0
9 TraesCS5A01G283400 chr5A 89.431 246 15 6 540 775 606207214 606207458 3.230000e-77 300.0
10 TraesCS5A01G283400 chr5A 92.188 64 3 2 4670 4733 510277384 510277445 7.610000e-14 89.8
11 TraesCS5A01G283400 chr5D 94.427 3212 92 27 1519 4677 388599328 388596151 0.000000e+00 4859.0
12 TraesCS5A01G283400 chr5D 88.709 1789 117 40 851 2598 353968163 353966419 0.000000e+00 2106.0
13 TraesCS5A01G283400 chr5D 86.463 1640 143 37 2416 4003 353970393 353968781 0.000000e+00 1725.0
14 TraesCS5A01G283400 chr5D 92.718 1030 58 8 501 1517 388600387 388599362 0.000000e+00 1471.0
15 TraesCS5A01G283400 chr5D 86.766 1277 108 23 2746 4007 388384084 388382854 0.000000e+00 1365.0
16 TraesCS5A01G283400 chr5D 94.347 743 36 4 2635 3376 353959776 353959039 0.000000e+00 1134.0
17 TraesCS5A01G283400 chr5D 88.293 914 64 18 1519 2411 353971323 353970432 0.000000e+00 1055.0
18 TraesCS5A01G283400 chr5D 87.982 907 67 16 1519 2411 388385372 388384494 0.000000e+00 1033.0
19 TraesCS5A01G283400 chr5D 86.719 640 66 6 3375 4007 353956592 353955965 0.000000e+00 693.0
20 TraesCS5A01G283400 chr5D 88.790 562 43 9 4102 4657 353968720 353968173 0.000000e+00 671.0
21 TraesCS5A01G283400 chr5D 81.472 788 72 40 34 774 484667817 484668577 3.700000e-161 579.0
22 TraesCS5A01G283400 chr5D 90.353 425 32 4 4102 4520 388382860 388382439 2.900000e-152 549.0
23 TraesCS5A01G283400 chr5D 79.827 808 73 40 34 774 484704890 484705674 1.770000e-139 507.0
24 TraesCS5A01G283400 chr5D 93.396 318 18 3 2416 2730 388384387 388384070 8.370000e-128 468.0
25 TraesCS5A01G283400 chr5D 93.671 316 12 4 189 504 388602291 388601984 3.010000e-127 466.0
26 TraesCS5A01G283400 chr5D 96.390 277 7 1 5240 5516 388381799 388381526 2.340000e-123 453.0
27 TraesCS5A01G283400 chr5D 84.768 453 30 17 4102 4519 353955971 353955523 8.550000e-113 418.0
28 TraesCS5A01G283400 chr5D 89.521 334 28 3 818 1145 353950090 353949758 3.070000e-112 416.0
29 TraesCS5A01G283400 chr5D 83.795 469 43 13 840 1306 388385978 388385541 1.110000e-111 414.0
30 TraesCS5A01G283400 chr5D 93.220 236 16 0 5281 5516 388412832 388412597 1.140000e-91 348.0
31 TraesCS5A01G283400 chr5D 89.531 277 20 1 5240 5516 388592942 388592675 5.290000e-90 342.0
32 TraesCS5A01G283400 chr5D 92.116 241 18 1 5276 5516 353954846 353954607 6.840000e-89 339.0
33 TraesCS5A01G283400 chr5D 91.837 196 15 1 1300 1495 353971577 353971383 7.040000e-69 272.0
34 TraesCS5A01G283400 chr5D 93.373 166 8 3 4513 4677 353955364 353955201 5.520000e-60 243.0
35 TraesCS5A01G283400 chr5B 93.186 1849 96 17 1519 3347 467024186 467022348 0.000000e+00 2689.0
36 TraesCS5A01G283400 chr5B 89.474 1482 93 29 30 1500 467025666 467024237 0.000000e+00 1814.0
37 TraesCS5A01G283400 chr5B 88.981 1325 84 22 3374 4677 467022351 467021068 0.000000e+00 1581.0
38 TraesCS5A01G283400 chr5B 83.768 690 60 28 124 774 596514006 596513330 1.700000e-169 606.0
39 TraesCS5A01G283400 chr5B 85.874 446 36 15 388 812 596500342 596499903 3.030000e-122 449.0
40 TraesCS5A01G283400 chr5B 90.106 283 16 3 5240 5516 467020406 467020130 1.890000e-94 357.0
41 TraesCS5A01G283400 chr4B 93.302 1075 58 7 1620 2694 31869379 31870439 0.000000e+00 1574.0
42 TraesCS5A01G283400 chr4B 88.829 1307 103 20 2679 3972 31870453 31871729 0.000000e+00 1565.0
43 TraesCS5A01G283400 chr4B 90.299 835 73 2 2905 3734 356000152 356000983 0.000000e+00 1086.0
44 TraesCS5A01G283400 chr4B 92.582 728 46 3 791 1517 31866443 31867163 0.000000e+00 1038.0
45 TraesCS5A01G283400 chr4B 96.040 101 4 0 1521 1621 31867199 31867299 1.230000e-36 165.0
46 TraesCS5A01G283400 chr4A 86.520 1276 120 21 2746 4007 45874151 45872914 0.000000e+00 1356.0
47 TraesCS5A01G283400 chr4A 87.104 853 69 16 1571 2411 45875313 45874490 0.000000e+00 928.0
48 TraesCS5A01G283400 chr4A 90.376 426 30 6 4102 4520 45872920 45872499 2.900000e-152 549.0
49 TraesCS5A01G283400 chr4A 93.038 316 20 2 2416 2730 45874451 45874137 1.400000e-125 460.0
50 TraesCS5A01G283400 chr4A 87.019 416 35 7 1066 1481 45875704 45875308 8.430000e-123 451.0
51 TraesCS5A01G283400 chr4A 90.809 272 25 0 4970 5241 666946641 666946370 1.130000e-96 364.0
52 TraesCS5A01G283400 chr4A 90.074 272 27 0 4970 5241 500942237 500941966 2.440000e-93 353.0
53 TraesCS5A01G283400 chr4A 78.927 522 77 26 34 533 452350208 452349698 1.920000e-84 324.0
54 TraesCS5A01G283400 chr4A 88.889 243 22 1 5274 5516 45872020 45871783 1.500000e-75 294.0
55 TraesCS5A01G283400 chr4A 95.000 60 3 0 4674 4733 666946134 666946193 1.640000e-15 95.3
56 TraesCS5A01G283400 chr2D 83.518 813 64 33 61 816 473101269 473100470 0.000000e+00 695.0
57 TraesCS5A01G283400 chr2D 82.432 666 58 32 202 825 62386533 62387181 1.360000e-145 527.0
58 TraesCS5A01G283400 chr2D 89.706 272 28 0 4970 5241 33335412 33335683 1.140000e-91 348.0
59 TraesCS5A01G283400 chr2D 93.548 62 2 2 4674 4733 585733062 585733001 2.120000e-14 91.6
60 TraesCS5A01G283400 chr7D 83.648 795 60 31 74 822 104890558 104891328 0.000000e+00 684.0
61 TraesCS5A01G283400 chr7D 93.750 64 2 2 4670 4733 192449986 192450047 1.640000e-15 95.3
62 TraesCS5A01G283400 chr7A 83.565 791 67 26 74 822 109342815 109343584 0.000000e+00 682.0
63 TraesCS5A01G283400 chr7A 95.918 245 9 1 4727 4971 722869197 722869440 4.000000e-106 396.0
64 TraesCS5A01G283400 chr7A 96.266 241 8 1 4731 4971 606189023 606189262 1.440000e-105 394.0
65 TraesCS5A01G283400 chr7A 95.142 247 12 0 4725 4971 293097287 293097041 1.860000e-104 390.0
66 TraesCS5A01G283400 chr7A 95.851 241 10 0 4731 4971 699150275 699150515 1.860000e-104 390.0
67 TraesCS5A01G283400 chr7A 95.851 241 10 0 4731 4971 705813327 705813567 1.860000e-104 390.0
68 TraesCS5A01G283400 chr7A 91.544 272 23 0 4970 5241 676423448 676423719 5.220000e-100 375.0
69 TraesCS5A01G283400 chr7A 89.963 269 27 0 4973 5241 728289967 728289699 1.140000e-91 348.0
70 TraesCS5A01G283400 chr2B 83.097 775 62 42 96 821 552434627 552433873 4.660000e-180 641.0
71 TraesCS5A01G283400 chr2B 81.728 810 78 40 61 825 97940731 97941515 3.650000e-171 612.0
72 TraesCS5A01G283400 chr1A 84.018 682 84 16 2746 3408 574802238 574802913 2.800000e-177 632.0
73 TraesCS5A01G283400 chr1A 93.023 258 18 0 4723 4980 54017252 54017509 1.450000e-100 377.0
74 TraesCS5A01G283400 chr1A 82.379 227 33 6 1823 2048 574801421 574801641 2.030000e-44 191.0
75 TraesCS5A01G283400 chr6B 86.768 393 42 4 3348 3734 16473240 16472852 3.950000e-116 429.0
76 TraesCS5A01G283400 chr2A 95.918 245 10 0 4731 4975 84977769 84977525 1.110000e-106 398.0
77 TraesCS5A01G283400 chr6A 92.419 277 18 1 5240 5516 130413843 130413570 5.180000e-105 392.0
78 TraesCS5A01G283400 chr6A 94.758 248 13 0 4731 4978 397730331 397730578 2.410000e-103 387.0
79 TraesCS5A01G283400 chr6A 90.441 272 26 0 4970 5241 603562122 603562393 5.250000e-95 359.0
80 TraesCS5A01G283400 chr3B 95.851 241 10 0 4731 4971 12174775 12175015 1.860000e-104 390.0
81 TraesCS5A01G283400 chr6D 92.058 277 19 1 5240 5516 106952755 106952482 2.410000e-103 387.0
82 TraesCS5A01G283400 chr6D 93.684 95 5 1 2637 2730 65465554 65465460 2.070000e-29 141.0
83 TraesCS5A01G283400 chr6D 100.000 51 0 0 4683 4733 47269811 47269761 1.640000e-15 95.3
84 TraesCS5A01G283400 chr6D 100.000 51 0 0 4683 4733 47662635 47662685 1.640000e-15 95.3
85 TraesCS5A01G283400 chr6D 100.000 51 0 0 4683 4733 47663581 47663531 1.640000e-15 95.3
86 TraesCS5A01G283400 chr3A 90.074 272 27 0 4970 5241 94384199 94384470 2.440000e-93 353.0
87 TraesCS5A01G283400 chr7B 80.940 383 37 17 68 431 63556727 63557092 2.530000e-68 270.0
88 TraesCS5A01G283400 chr4D 100.000 53 0 0 4681 4733 46605929 46605981 1.260000e-16 99.0
89 TraesCS5A01G283400 chr4D 100.000 51 0 0 4683 4733 46613726 46613676 1.640000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G283400 chr5A 491584770 491590285 5515 True 10187.000000 10187 100.000000 1 5516 1 chr5A.!!$R1 5515
1 TraesCS5A01G283400 chr5A 491569644 491573595 3951 True 749.166667 1642 91.024333 933 5516 6 chr5A.!!$R2 4583
2 TraesCS5A01G283400 chr5D 388592675 388602291 9616 True 1784.500000 4859 92.586750 189 5516 4 chr5D.!!$R6 5327
3 TraesCS5A01G283400 chr5D 353966419 353971577 5158 True 1165.800000 2106 88.818400 851 4657 5 chr5D.!!$R4 3806
4 TraesCS5A01G283400 chr5D 388381526 388385978 4452 True 713.666667 1365 89.780333 840 5516 6 chr5D.!!$R5 4676
5 TraesCS5A01G283400 chr5D 484667817 484668577 760 False 579.000000 579 81.472000 34 774 1 chr5D.!!$F1 740
6 TraesCS5A01G283400 chr5D 353954607 353959776 5169 True 565.400000 1134 90.264600 2635 5516 5 chr5D.!!$R3 2881
7 TraesCS5A01G283400 chr5D 484704890 484705674 784 False 507.000000 507 79.827000 34 774 1 chr5D.!!$F2 740
8 TraesCS5A01G283400 chr5B 467020130 467025666 5536 True 1610.250000 2689 90.436750 30 5516 4 chr5B.!!$R3 5486
9 TraesCS5A01G283400 chr5B 596513330 596514006 676 True 606.000000 606 83.768000 124 774 1 chr5B.!!$R2 650
10 TraesCS5A01G283400 chr4B 356000152 356000983 831 False 1086.000000 1086 90.299000 2905 3734 1 chr4B.!!$F1 829
11 TraesCS5A01G283400 chr4B 31866443 31871729 5286 False 1085.500000 1574 92.688250 791 3972 4 chr4B.!!$F2 3181
12 TraesCS5A01G283400 chr4A 45871783 45875704 3921 True 673.000000 1356 88.824333 1066 5516 6 chr4A.!!$R4 4450
13 TraesCS5A01G283400 chr4A 452349698 452350208 510 True 324.000000 324 78.927000 34 533 1 chr4A.!!$R1 499
14 TraesCS5A01G283400 chr2D 473100470 473101269 799 True 695.000000 695 83.518000 61 816 1 chr2D.!!$R1 755
15 TraesCS5A01G283400 chr2D 62386533 62387181 648 False 527.000000 527 82.432000 202 825 1 chr2D.!!$F2 623
16 TraesCS5A01G283400 chr7D 104890558 104891328 770 False 684.000000 684 83.648000 74 822 1 chr7D.!!$F1 748
17 TraesCS5A01G283400 chr7A 109342815 109343584 769 False 682.000000 682 83.565000 74 822 1 chr7A.!!$F1 748
18 TraesCS5A01G283400 chr2B 552433873 552434627 754 True 641.000000 641 83.097000 96 821 1 chr2B.!!$R1 725
19 TraesCS5A01G283400 chr2B 97940731 97941515 784 False 612.000000 612 81.728000 61 825 1 chr2B.!!$F1 764
20 TraesCS5A01G283400 chr1A 574801421 574802913 1492 False 411.500000 632 83.198500 1823 3408 2 chr1A.!!$F2 1585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.029567 GTCGACTCATCCTACAGCCG 59.970 60.0 8.70 0.00 0.00 5.52 F
64 76 1.209621 CCGTTCCCAATTCCCCTCTA 58.790 55.0 0.00 0.00 0.00 2.43 F
1356 3128 1.043816 ATCTCGCGGAGGTCATCAAT 58.956 50.0 6.13 0.00 0.00 2.57 F
1865 5762 1.169577 TGACACTGGTTGCGTTTTGT 58.830 45.0 0.00 0.00 0.00 2.83 F
2544 6578 1.136690 TCGTAGAACTTTGCACTGCG 58.863 50.0 5.58 5.58 40.05 5.18 F
3207 7317 1.322442 AGCAGTCAGAAAACCCAAGC 58.678 50.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 3018 3.255888 TCGTCAGTTGTCAGTGAATAGCT 59.744 43.478 0.00 0.0 33.93 3.32 R
2055 5953 0.889186 CACTTTGCCGCTGTACCCTT 60.889 55.000 0.00 0.0 0.00 3.95 R
2544 6578 0.810823 TTGCAAGCAAAGCAAGCACC 60.811 50.000 4.79 0.0 46.13 5.01 R
3207 7317 1.203287 TGCACGACTTCAGATCCTCAG 59.797 52.381 0.00 0.0 0.00 3.35 R
4223 10987 0.843309 TGGTTGGTCAGCCAGAGAAA 59.157 50.000 2.35 0.0 46.91 2.52 R
4798 12223 0.096976 CGCCGCAGTTGGTCTTATTG 59.903 55.000 0.00 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.949031 GTCGACTCATCCTACAGCC 57.051 57.895 8.70 0.00 0.00 4.85
19 20 0.029567 GTCGACTCATCCTACAGCCG 59.970 60.000 8.70 0.00 0.00 5.52
20 21 1.299468 CGACTCATCCTACAGCCGC 60.299 63.158 0.00 0.00 0.00 6.53
21 22 1.299468 GACTCATCCTACAGCCGCG 60.299 63.158 0.00 0.00 0.00 6.46
22 23 2.028190 CTCATCCTACAGCCGCGG 59.972 66.667 24.05 24.05 0.00 6.46
23 24 4.221422 TCATCCTACAGCCGCGGC 62.221 66.667 42.34 42.34 42.33 6.53
53 54 3.636231 CACTGCCTCCCGTTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
64 76 1.209621 CCGTTCCCAATTCCCCTCTA 58.790 55.000 0.00 0.00 0.00 2.43
119 140 1.505353 CCTCGCCGTCGACTTTACT 59.495 57.895 14.70 0.00 40.21 2.24
380 465 6.424812 GCTCCTTTGAAAATTGCAATGTACTT 59.575 34.615 13.82 0.00 0.00 2.24
381 466 7.598493 GCTCCTTTGAAAATTGCAATGTACTTA 59.402 33.333 13.82 0.00 0.00 2.24
382 467 9.643693 CTCCTTTGAAAATTGCAATGTACTTAT 57.356 29.630 13.82 0.00 0.00 1.73
427 519 7.683945 GCCCAGGAATGTTACTACTTACTACTC 60.684 44.444 0.00 0.00 0.00 2.59
478 575 1.839354 TCCATGTGGCATCTTGAGCTA 59.161 47.619 0.00 0.00 34.44 3.32
650 2398 7.105588 AGAATGAACACATGCACATAGTCTTA 58.894 34.615 0.00 0.00 0.00 2.10
661 2409 9.069078 CATGCACATAGTCTTATTTGAACTTTG 57.931 33.333 0.00 0.00 0.00 2.77
844 2606 5.048507 GCTGGGTAATTTCTAGTTACCTCG 58.951 45.833 16.31 10.72 46.60 4.63
923 2688 6.413818 GCCAATTCACGCACTATTATTTGTAC 59.586 38.462 0.00 0.00 0.00 2.90
980 2750 9.897744 TTGTTGAGCATTGAGTTTAAATTCTAG 57.102 29.630 11.47 3.60 0.00 2.43
1201 2971 3.488363 CTCCTCAAGGTACGCCTACTAT 58.512 50.000 0.00 0.00 46.33 2.12
1245 3017 2.032071 CCTTTTCCGGGCGAGTGT 59.968 61.111 0.00 0.00 0.00 3.55
1246 3018 1.294138 CCTTTTCCGGGCGAGTGTA 59.706 57.895 0.00 0.00 0.00 2.90
1356 3128 1.043816 ATCTCGCGGAGGTCATCAAT 58.956 50.000 6.13 0.00 0.00 2.57
1436 3208 2.289444 GGTTCGTCAGGTTTCTCATCCA 60.289 50.000 0.00 0.00 0.00 3.41
1547 3357 1.397672 TGTTGGGACATGTTGTGGTG 58.602 50.000 0.00 0.00 39.30 4.17
1665 5558 4.796038 AATTTCCTGGCAGTTCAGATTG 57.204 40.909 14.43 0.00 36.93 2.67
1865 5762 1.169577 TGACACTGGTTGCGTTTTGT 58.830 45.000 0.00 0.00 0.00 2.83
1882 5779 6.202937 CGTTTTGTAAACTATCCTGTTGCAA 58.797 36.000 0.00 0.00 0.00 4.08
1965 5862 8.311109 ACTTTTGTTCCTTGTACTTGTTTTCAT 58.689 29.630 0.00 0.00 0.00 2.57
2012 5910 8.779354 AAATTTGAATCTCTGGTAGTCTACAC 57.221 34.615 12.08 2.49 0.00 2.90
2026 5924 5.179452 AGTCTACACATATTGCCTGGTTT 57.821 39.130 0.00 0.00 0.00 3.27
2027 5925 5.570320 AGTCTACACATATTGCCTGGTTTT 58.430 37.500 0.00 0.00 0.00 2.43
2123 6029 8.493547 GCAAGGTTTCCGATGTATTTAGTATAC 58.506 37.037 0.00 0.00 0.00 1.47
2544 6578 1.136690 TCGTAGAACTTTGCACTGCG 58.863 50.000 5.58 5.58 40.05 5.18
2703 6772 8.542497 TGGTAGTCAAACTGTTATGTGTATTC 57.458 34.615 0.00 0.00 0.00 1.75
3207 7317 1.322442 AGCAGTCAGAAAACCCAAGC 58.678 50.000 0.00 0.00 0.00 4.01
3595 10180 8.484641 AGTTATGATGACACTCAAGTATGTTG 57.515 34.615 0.00 0.00 0.00 3.33
3853 10504 2.893637 ACACATTGCGACTATGGTCTC 58.106 47.619 7.68 0.00 40.10 3.36
3866 10517 8.865001 GCGACTATGGTCTCATTTTCTATTATC 58.135 37.037 7.68 0.00 40.10 1.75
4019 10740 9.736023 GCTTGTTTATTAATTATTCCCTCTGTG 57.264 33.333 0.00 0.00 0.00 3.66
4209 10946 3.365265 GGAGCAAACACCCCAGCG 61.365 66.667 0.00 0.00 0.00 5.18
4251 11015 2.619074 GGCTGACCAACCAGATAAAGCT 60.619 50.000 0.00 0.00 36.29 3.74
4293 11057 1.138661 GATTCTCAGAGTGGGAGGCAG 59.861 57.143 0.00 0.00 33.18 4.85
4407 11171 0.829333 AGAGAGTGGCATTCATCGCT 59.171 50.000 12.78 2.99 0.00 4.93
4499 11269 0.895530 ACGATTCGACAGACCACCAT 59.104 50.000 13.95 0.00 0.00 3.55
4583 11519 7.707035 GGGCTATACATATGCACATCTTAGTAC 59.293 40.741 1.58 0.00 0.00 2.73
4677 11620 5.927819 TCACCAAGCATCACATGACATATA 58.072 37.500 0.00 0.00 0.00 0.86
4678 11621 6.536447 TCACCAAGCATCACATGACATATAT 58.464 36.000 0.00 0.00 0.00 0.86
4679 11622 6.652062 TCACCAAGCATCACATGACATATATC 59.348 38.462 0.00 0.00 0.00 1.63
4680 11623 5.942236 ACCAAGCATCACATGACATATATCC 59.058 40.000 0.00 0.00 0.00 2.59
4686 12111 8.546322 AGCATCACATGACATATATCCAAGTAT 58.454 33.333 0.00 0.00 0.00 2.12
4713 12138 4.202070 ACCAAAAACTACCACATTTCACGG 60.202 41.667 0.00 0.00 0.00 4.94
4716 12141 5.838531 AAAACTACCACATTTCACGGAAA 57.161 34.783 2.25 2.25 35.94 3.13
4734 12159 5.326120 GGAAACGTGACAGAAAACTACTC 57.674 43.478 0.00 0.00 0.00 2.59
4735 12160 4.210746 GGAAACGTGACAGAAAACTACTCC 59.789 45.833 0.00 0.00 0.00 3.85
4736 12161 3.382048 ACGTGACAGAAAACTACTCCC 57.618 47.619 0.00 0.00 0.00 4.30
4738 12163 3.005578 ACGTGACAGAAAACTACTCCCTC 59.994 47.826 0.00 0.00 0.00 4.30
4739 12164 3.614390 CGTGACAGAAAACTACTCCCTCC 60.614 52.174 0.00 0.00 0.00 4.30
4740 12165 3.323979 GTGACAGAAAACTACTCCCTCCA 59.676 47.826 0.00 0.00 0.00 3.86
4741 12166 4.020128 GTGACAGAAAACTACTCCCTCCAT 60.020 45.833 0.00 0.00 0.00 3.41
4742 12167 4.597507 TGACAGAAAACTACTCCCTCCATT 59.402 41.667 0.00 0.00 0.00 3.16
4743 12168 5.167303 ACAGAAAACTACTCCCTCCATTC 57.833 43.478 0.00 0.00 0.00 2.67
4744 12169 4.019231 ACAGAAAACTACTCCCTCCATTCC 60.019 45.833 0.00 0.00 0.00 3.01
4746 12171 4.601857 AGAAAACTACTCCCTCCATTCCAA 59.398 41.667 0.00 0.00 0.00 3.53
4747 12172 5.074515 AGAAAACTACTCCCTCCATTCCAAA 59.925 40.000 0.00 0.00 0.00 3.28
4748 12173 5.333566 AAACTACTCCCTCCATTCCAAAA 57.666 39.130 0.00 0.00 0.00 2.44
4749 12174 5.536497 AACTACTCCCTCCATTCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
4750 12175 6.652205 AACTACTCCCTCCATTCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
4751 12176 6.848562 ACTACTCCCTCCATTCCAAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
4753 12178 7.978925 ACTACTCCCTCCATTCCAAAATATAG 58.021 38.462 0.00 0.00 0.00 1.31
4754 12179 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
4755 12180 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
4756 12181 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
4757 12182 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
4758 12183 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
4760 12185 3.569701 CCATTCCAAAATATAGTGCGCCT 59.430 43.478 4.18 3.99 0.00 5.52
4761 12186 4.539870 CATTCCAAAATATAGTGCGCCTG 58.460 43.478 4.18 0.00 0.00 4.85
4762 12187 1.946768 TCCAAAATATAGTGCGCCTGC 59.053 47.619 4.18 0.00 43.20 4.85
4775 12200 2.266055 CCTGCACTTCCCGAGGTC 59.734 66.667 0.00 0.00 0.00 3.85
4777 12202 0.970937 CCTGCACTTCCCGAGGTCTA 60.971 60.000 0.00 0.00 0.00 2.59
4778 12203 0.895530 CTGCACTTCCCGAGGTCTAA 59.104 55.000 0.00 0.00 0.00 2.10
4779 12204 0.606604 TGCACTTCCCGAGGTCTAAC 59.393 55.000 0.00 0.00 0.00 2.34
4780 12205 0.896226 GCACTTCCCGAGGTCTAACT 59.104 55.000 0.00 0.00 0.00 2.24
4781 12206 1.275573 GCACTTCCCGAGGTCTAACTT 59.724 52.381 0.00 0.00 0.00 2.66
4782 12207 2.289506 GCACTTCCCGAGGTCTAACTTT 60.290 50.000 0.00 0.00 0.00 2.66
4783 12208 3.326747 CACTTCCCGAGGTCTAACTTTG 58.673 50.000 0.00 0.00 0.00 2.77
4785 12210 3.006644 ACTTCCCGAGGTCTAACTTTGAC 59.993 47.826 0.00 0.00 0.00 3.18
4814 14990 5.365403 TTTAACCAATAAGACCAACTGCG 57.635 39.130 0.00 0.00 0.00 5.18
4817 14993 0.096976 CAATAAGACCAACTGCGGCG 59.903 55.000 0.51 0.51 0.00 6.46
4819 14995 2.869503 ATAAGACCAACTGCGGCGGG 62.870 60.000 14.26 2.79 0.00 6.13
4881 15069 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
4883 15071 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
4886 15074 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
4890 15078 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
4891 15079 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
4892 15080 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
4904 15092 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
4905 15093 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
4907 15095 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
4908 15096 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
4909 15097 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
4910 15098 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
4911 15099 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
4913 15101 8.403236 GCAATCGGTCTTGGTAGTTAAATTTAT 58.597 33.333 0.00 0.00 0.00 1.40
4914 15102 9.716507 CAATCGGTCTTGGTAGTTAAATTTATG 57.283 33.333 0.00 0.00 0.00 1.90
4915 15103 7.852971 TCGGTCTTGGTAGTTAAATTTATGG 57.147 36.000 0.00 0.00 0.00 2.74
4916 15104 7.396418 TCGGTCTTGGTAGTTAAATTTATGGT 58.604 34.615 0.00 0.00 0.00 3.55
4917 15105 7.550196 TCGGTCTTGGTAGTTAAATTTATGGTC 59.450 37.037 0.00 0.00 0.00 4.02
4928 15116 9.476202 AGTTAAATTTATGGTCAAAGTTGAAGC 57.524 29.630 0.00 0.00 39.21 3.86
4929 15117 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
4932 15120 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
4933 15121 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
4936 15124 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
4938 15126 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
4939 15127 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
4940 15128 1.906574 AGTTGAAGCACGGGGATAGAA 59.093 47.619 0.00 0.00 0.00 2.10
4943 15131 2.184533 TGAAGCACGGGGATAGAAGAA 58.815 47.619 0.00 0.00 0.00 2.52
4946 15134 0.178068 GCACGGGGATAGAAGAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
4948 15136 1.482593 CACGGGGATAGAAGAAGCACT 59.517 52.381 0.00 0.00 0.00 4.40
4950 15138 2.694109 ACGGGGATAGAAGAAGCACTAC 59.306 50.000 0.00 0.00 0.00 2.73
4951 15139 2.693591 CGGGGATAGAAGAAGCACTACA 59.306 50.000 0.00 0.00 0.00 2.74
4953 15141 4.202264 CGGGGATAGAAGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
4954 15142 5.059833 GGGGATAGAAGAAGCACTACATTG 58.940 45.833 0.00 0.00 0.00 2.82
4956 15144 5.525378 GGGATAGAAGAAGCACTACATTGTG 59.475 44.000 0.00 0.00 40.62 3.33
4957 15145 5.525378 GGATAGAAGAAGCACTACATTGTGG 59.475 44.000 0.00 0.00 38.31 4.17
4958 15146 4.623932 AGAAGAAGCACTACATTGTGGA 57.376 40.909 7.20 0.00 38.31 4.02
4960 15148 5.564550 AGAAGAAGCACTACATTGTGGAAT 58.435 37.500 7.20 0.00 38.31 3.01
4961 15149 5.413833 AGAAGAAGCACTACATTGTGGAATG 59.586 40.000 7.20 0.00 44.11 2.67
4962 15150 4.012374 AGAAGCACTACATTGTGGAATGG 58.988 43.478 7.20 0.00 43.00 3.16
4963 15151 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
4967 15155 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
4968 15156 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
4969 15157 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
4971 15159 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
4972 15160 1.580059 TGTGGAATGGAGGGAGTACC 58.420 55.000 0.00 0.00 40.67 3.34
4973 15161 1.203376 TGTGGAATGGAGGGAGTACCA 60.203 52.381 0.00 0.00 43.89 3.25
4974 15162 1.209747 GTGGAATGGAGGGAGTACCAC 59.790 57.143 0.00 0.00 43.89 4.16
4975 15163 1.080498 TGGAATGGAGGGAGTACCACT 59.920 52.381 0.00 0.00 43.89 4.00
4976 15164 2.197465 GGAATGGAGGGAGTACCACTT 58.803 52.381 0.00 0.00 43.89 3.16
4977 15165 2.576648 GGAATGGAGGGAGTACCACTTT 59.423 50.000 0.00 0.00 43.89 2.66
4978 15166 3.778629 GGAATGGAGGGAGTACCACTTTA 59.221 47.826 0.00 0.00 43.89 1.85
4980 15168 2.173519 TGGAGGGAGTACCACTTTACG 58.826 52.381 0.00 0.00 43.89 3.18
4981 15169 2.225091 TGGAGGGAGTACCACTTTACGA 60.225 50.000 0.00 0.00 43.89 3.43
4982 15170 3.029570 GGAGGGAGTACCACTTTACGAT 58.970 50.000 0.00 0.00 43.89 3.73
4985 15173 5.485620 GAGGGAGTACCACTTTACGATTTT 58.514 41.667 0.00 0.00 43.89 1.82
4986 15174 5.243207 AGGGAGTACCACTTTACGATTTTG 58.757 41.667 0.00 0.00 43.89 2.44
4987 15175 4.999311 GGGAGTACCACTTTACGATTTTGT 59.001 41.667 0.00 0.00 39.85 2.83
4988 15176 5.106830 GGGAGTACCACTTTACGATTTTGTG 60.107 44.000 0.00 0.00 39.85 3.33
4989 15177 5.352643 AGTACCACTTTACGATTTTGTGC 57.647 39.130 0.00 0.00 0.00 4.57
4991 15179 2.031508 ACCACTTTACGATTTTGTGCGG 60.032 45.455 0.00 0.00 0.00 5.69
4993 15181 3.304123 CCACTTTACGATTTTGTGCGGAA 60.304 43.478 0.00 0.00 0.00 4.30
4996 15184 4.736307 ACTTTACGATTTTGTGCGGAAAAC 59.264 37.500 0.00 0.00 39.54 2.43
4997 15185 4.555348 TTACGATTTTGTGCGGAAAACT 57.445 36.364 0.00 0.00 0.00 2.66
4999 15187 3.880610 ACGATTTTGTGCGGAAAACTAC 58.119 40.909 0.00 0.00 0.00 2.73
5000 15188 3.231160 CGATTTTGTGCGGAAAACTACC 58.769 45.455 0.00 0.00 0.00 3.18
5003 15191 4.657436 TTTTGTGCGGAAAACTACCATT 57.343 36.364 0.00 0.00 0.00 3.16
5004 15192 4.657436 TTTGTGCGGAAAACTACCATTT 57.343 36.364 0.00 0.00 0.00 2.32
5006 15194 4.657436 TGTGCGGAAAACTACCATTTTT 57.343 36.364 0.00 0.00 31.90 1.94
5007 15195 4.363999 TGTGCGGAAAACTACCATTTTTG 58.636 39.130 0.00 0.00 31.90 2.44
5009 15197 4.443063 GTGCGGAAAACTACCATTTTTGTC 59.557 41.667 0.00 0.00 31.90 3.18
5010 15198 4.098044 TGCGGAAAACTACCATTTTTGTCA 59.902 37.500 0.00 0.00 31.90 3.58
5011 15199 5.221342 TGCGGAAAACTACCATTTTTGTCAT 60.221 36.000 0.00 0.00 31.90 3.06
5013 15201 6.864165 GCGGAAAACTACCATTTTTGTCATAA 59.136 34.615 0.00 0.00 31.90 1.90
5014 15202 7.544217 GCGGAAAACTACCATTTTTGTCATAAT 59.456 33.333 0.00 0.00 31.90 1.28
5015 15203 9.072294 CGGAAAACTACCATTTTTGTCATAATC 57.928 33.333 0.00 0.00 31.90 1.75
5016 15204 9.366216 GGAAAACTACCATTTTTGTCATAATCC 57.634 33.333 0.00 0.00 31.90 3.01
5017 15205 8.980143 AAAACTACCATTTTTGTCATAATCCG 57.020 30.769 0.00 0.00 0.00 4.18
5018 15206 7.696992 AACTACCATTTTTGTCATAATCCGT 57.303 32.000 0.00 0.00 0.00 4.69
5019 15207 7.083875 ACTACCATTTTTGTCATAATCCGTG 57.916 36.000 0.00 0.00 0.00 4.94
5020 15208 5.323371 ACCATTTTTGTCATAATCCGTGG 57.677 39.130 0.00 0.00 0.00 4.94
5022 15210 4.381398 CCATTTTTGTCATAATCCGTGGCA 60.381 41.667 0.00 0.00 0.00 4.92
5024 15212 4.855715 TTTTGTCATAATCCGTGGCAAA 57.144 36.364 2.15 2.15 46.05 3.68
5025 15213 4.855715 TTTGTCATAATCCGTGGCAAAA 57.144 36.364 3.68 0.00 45.12 2.44
5026 15214 4.855715 TTGTCATAATCCGTGGCAAAAA 57.144 36.364 0.00 0.00 38.15 1.94
5046 15234 2.719426 ACTACCAAGTCTCGAAACCG 57.281 50.000 0.00 0.00 0.00 4.44
5047 15235 2.233271 ACTACCAAGTCTCGAAACCGA 58.767 47.619 0.00 0.00 34.56 4.69
5048 15236 2.824341 ACTACCAAGTCTCGAAACCGAT 59.176 45.455 0.00 0.00 35.31 4.18
5050 15238 1.269166 CCAAGTCTCGAAACCGATCG 58.731 55.000 8.51 8.51 44.04 3.69
5051 15239 0.640768 CAAGTCTCGAAACCGATCGC 59.359 55.000 10.32 0.00 42.44 4.58
5052 15240 0.526662 AAGTCTCGAAACCGATCGCT 59.473 50.000 10.32 0.00 42.44 4.93
5053 15241 0.526662 AGTCTCGAAACCGATCGCTT 59.473 50.000 10.32 4.88 42.44 4.68
5057 15245 0.734942 TCGAAACCGATCGCTTCACC 60.735 55.000 21.05 5.13 42.44 4.02
5058 15246 1.693083 CGAAACCGATCGCTTCACCC 61.693 60.000 21.05 3.94 35.85 4.61
5059 15247 1.693083 GAAACCGATCGCTTCACCCG 61.693 60.000 10.32 0.00 0.00 5.28
5060 15248 2.444700 AAACCGATCGCTTCACCCGT 62.445 55.000 10.32 0.00 0.00 5.28
5061 15249 2.885644 CCGATCGCTTCACCCGTG 60.886 66.667 10.32 0.00 0.00 4.94
5062 15250 2.885644 CGATCGCTTCACCCGTGG 60.886 66.667 0.26 0.00 0.00 4.94
5063 15251 2.264794 GATCGCTTCACCCGTGGT 59.735 61.111 0.00 0.00 35.62 4.16
5065 15253 0.108520 GATCGCTTCACCCGTGGTAA 60.109 55.000 0.00 0.00 32.11 2.85
5066 15254 0.108329 ATCGCTTCACCCGTGGTAAG 60.108 55.000 0.00 2.86 32.11 2.34
5067 15255 2.388232 CGCTTCACCCGTGGTAAGC 61.388 63.158 17.25 17.25 38.11 3.09
5068 15256 1.302192 GCTTCACCCGTGGTAAGCA 60.302 57.895 19.68 0.00 39.59 3.91
5069 15257 1.574702 GCTTCACCCGTGGTAAGCAC 61.575 60.000 19.68 0.00 39.59 4.40
5070 15258 0.953960 CTTCACCCGTGGTAAGCACC 60.954 60.000 0.00 0.00 46.00 5.01
5082 15270 2.228103 GGTAAGCACCAAACTAACCAGC 59.772 50.000 0.00 0.00 45.04 4.85
5083 15271 1.328279 AAGCACCAAACTAACCAGCC 58.672 50.000 0.00 0.00 0.00 4.85
5084 15272 0.889186 AGCACCAAACTAACCAGCCG 60.889 55.000 0.00 0.00 0.00 5.52
5096 15284 3.047877 CAGCCGGTCCCACGTTTC 61.048 66.667 1.90 0.00 0.00 2.78
5098 15286 3.047877 GCCGGTCCCACGTTTCAG 61.048 66.667 1.90 0.00 0.00 3.02
5099 15287 2.358247 CCGGTCCCACGTTTCAGG 60.358 66.667 0.00 0.00 0.00 3.86
5100 15288 3.047877 CGGTCCCACGTTTCAGGC 61.048 66.667 0.00 0.00 0.00 4.85
5101 15289 3.047877 GGTCCCACGTTTCAGGCG 61.048 66.667 0.00 0.00 0.00 5.52
5106 15294 2.176546 CACGTTTCAGGCGCCATG 59.823 61.111 31.54 22.97 0.00 3.66
5107 15295 3.055719 ACGTTTCAGGCGCCATGG 61.056 61.111 31.54 17.97 0.00 3.66
5108 15296 3.055719 CGTTTCAGGCGCCATGGT 61.056 61.111 31.54 4.11 0.00 3.55
5109 15297 2.568090 GTTTCAGGCGCCATGGTG 59.432 61.111 31.54 21.43 0.00 4.17
5110 15298 2.676121 TTTCAGGCGCCATGGTGG 60.676 61.111 31.54 13.53 41.55 4.61
5136 15324 3.037249 TGCCCGACGCACGTTAAC 61.037 61.111 0.00 0.00 44.64 2.01
5137 15325 4.125097 GCCCGACGCACGTTAACG 62.125 66.667 25.68 25.68 46.33 3.18
5138 15326 3.472298 CCCGACGCACGTTAACGG 61.472 66.667 29.81 19.70 44.95 4.44
5139 15327 4.125097 CCGACGCACGTTAACGGC 62.125 66.667 29.81 26.07 44.95 5.68
5143 15331 4.142047 CGCACGTTAACGGCGCAT 62.142 61.111 33.83 14.58 45.76 4.73
5144 15332 2.276430 GCACGTTAACGGCGCATC 60.276 61.111 29.81 9.68 44.95 3.91
5145 15333 2.398036 CACGTTAACGGCGCATCC 59.602 61.111 29.81 0.00 44.95 3.51
5146 15334 2.048033 ACGTTAACGGCGCATCCA 60.048 55.556 29.81 0.00 44.95 3.41
5147 15335 2.385091 ACGTTAACGGCGCATCCAC 61.385 57.895 29.81 0.00 44.95 4.02
5148 15336 2.398036 GTTAACGGCGCATCCACG 59.602 61.111 10.83 5.43 34.01 4.94
5149 15337 2.816083 TTAACGGCGCATCCACGG 60.816 61.111 10.83 0.00 34.01 4.94
5150 15338 3.592856 TTAACGGCGCATCCACGGT 62.593 57.895 10.83 3.82 34.01 4.83
5151 15339 3.993376 TAACGGCGCATCCACGGTC 62.993 63.158 10.83 0.00 34.01 4.79
5156 15344 2.433491 CGCATCCACGGTCGGAAA 60.433 61.111 3.93 0.00 38.95 3.13
5157 15345 2.736682 CGCATCCACGGTCGGAAAC 61.737 63.158 3.93 0.09 38.95 2.78
5174 15362 2.024871 CGGCGTCGTCAGAGGATC 59.975 66.667 0.00 0.00 34.40 3.36
5175 15363 2.024871 GGCGTCGTCAGAGGATCG 59.975 66.667 0.00 3.85 42.67 3.69
5176 15364 2.024871 GCGTCGTCAGAGGATCGG 59.975 66.667 13.36 2.47 42.67 4.18
5177 15365 2.024871 CGTCGTCAGAGGATCGGC 59.975 66.667 0.00 0.00 42.67 5.54
5178 15366 2.761195 CGTCGTCAGAGGATCGGCA 61.761 63.158 0.00 0.00 42.67 5.69
5179 15367 1.736586 GTCGTCAGAGGATCGGCAT 59.263 57.895 0.00 0.00 42.67 4.40
5180 15368 0.318275 GTCGTCAGAGGATCGGCATC 60.318 60.000 0.00 0.00 42.67 3.91
5181 15369 0.751643 TCGTCAGAGGATCGGCATCA 60.752 55.000 0.00 0.00 42.67 3.07
5182 15370 0.103026 CGTCAGAGGATCGGCATCAA 59.897 55.000 0.00 0.00 42.67 2.57
5183 15371 1.471501 CGTCAGAGGATCGGCATCAAA 60.472 52.381 0.00 0.00 42.67 2.69
5184 15372 2.804572 CGTCAGAGGATCGGCATCAAAT 60.805 50.000 0.00 0.00 42.67 2.32
5185 15373 2.547211 GTCAGAGGATCGGCATCAAATG 59.453 50.000 0.00 0.00 42.67 2.32
5186 15374 1.878088 CAGAGGATCGGCATCAAATGG 59.122 52.381 0.00 0.00 42.67 3.16
5193 15381 4.225703 GCATCAAATGGCCGGCCC 62.226 66.667 41.75 24.44 34.56 5.80
5194 15382 3.539791 CATCAAATGGCCGGCCCC 61.540 66.667 41.75 19.91 34.56 5.80
5195 15383 4.073025 ATCAAATGGCCGGCCCCA 62.073 61.111 41.75 26.23 39.65 4.96
5197 15385 3.852307 CAAATGGCCGGCCCCATG 61.852 66.667 41.75 30.82 44.68 3.66
5198 15386 4.397010 AAATGGCCGGCCCCATGT 62.397 61.111 41.75 22.82 44.68 3.21
5199 15387 3.922116 AAATGGCCGGCCCCATGTT 62.922 57.895 41.75 24.16 44.68 2.71
5200 15388 3.922116 AATGGCCGGCCCCATGTTT 62.922 57.895 41.75 21.61 44.68 2.83
5201 15389 3.922116 ATGGCCGGCCCCATGTTTT 62.922 57.895 41.75 13.69 43.80 2.43
5202 15390 4.081185 GGCCGGCCCCATGTTTTG 62.081 66.667 36.64 0.00 0.00 2.44
5203 15391 2.994417 GCCGGCCCCATGTTTTGA 60.994 61.111 18.11 0.00 0.00 2.69
5204 15392 2.358372 GCCGGCCCCATGTTTTGAT 61.358 57.895 18.11 0.00 0.00 2.57
5205 15393 1.516892 CCGGCCCCATGTTTTGATG 59.483 57.895 0.00 0.00 0.00 3.07
5206 15394 1.153588 CGGCCCCATGTTTTGATGC 60.154 57.895 0.00 0.00 0.00 3.91
5207 15395 1.886253 CGGCCCCATGTTTTGATGCA 61.886 55.000 0.00 0.00 0.00 3.96
5208 15396 0.391528 GGCCCCATGTTTTGATGCAC 60.392 55.000 0.00 0.00 0.00 4.57
5209 15397 0.609662 GCCCCATGTTTTGATGCACT 59.390 50.000 0.00 0.00 0.00 4.40
5210 15398 1.673626 GCCCCATGTTTTGATGCACTG 60.674 52.381 0.00 0.00 0.00 3.66
5211 15399 1.894466 CCCCATGTTTTGATGCACTGA 59.106 47.619 0.00 0.00 0.00 3.41
5212 15400 2.299582 CCCCATGTTTTGATGCACTGAA 59.700 45.455 0.00 0.00 0.00 3.02
5213 15401 3.319755 CCCATGTTTTGATGCACTGAAC 58.680 45.455 0.00 0.00 0.00 3.18
5214 15402 2.981805 CCATGTTTTGATGCACTGAACG 59.018 45.455 0.00 0.00 0.00 3.95
5215 15403 2.118228 TGTTTTGATGCACTGAACGC 57.882 45.000 0.00 0.00 0.00 4.84
5216 15404 1.403323 TGTTTTGATGCACTGAACGCA 59.597 42.857 0.00 0.00 44.94 5.24
5217 15405 2.159324 TGTTTTGATGCACTGAACGCAA 60.159 40.909 0.00 0.00 43.84 4.85
5218 15406 2.857152 GTTTTGATGCACTGAACGCAAA 59.143 40.909 0.00 0.00 43.84 3.68
5219 15407 3.367992 TTTGATGCACTGAACGCAAAT 57.632 38.095 0.00 0.00 43.84 2.32
5220 15408 2.617250 TGATGCACTGAACGCAAATC 57.383 45.000 0.00 0.00 43.84 2.17
5221 15409 1.136000 TGATGCACTGAACGCAAATCG 60.136 47.619 0.00 0.00 43.84 3.34
5222 15410 1.128507 GATGCACTGAACGCAAATCGA 59.871 47.619 0.00 0.00 43.84 3.59
5223 15411 0.234625 TGCACTGAACGCAAATCGAC 59.765 50.000 0.00 0.00 41.67 4.20
5224 15412 0.785708 GCACTGAACGCAAATCGACG 60.786 55.000 0.00 0.00 41.67 5.12
5225 15413 0.781787 CACTGAACGCAAATCGACGA 59.218 50.000 0.00 0.00 41.67 4.20
5226 15414 0.782384 ACTGAACGCAAATCGACGAC 59.218 50.000 0.00 0.00 41.67 4.34
5227 15415 0.093026 CTGAACGCAAATCGACGACC 59.907 55.000 0.00 0.00 41.67 4.79
5228 15416 0.597898 TGAACGCAAATCGACGACCA 60.598 50.000 0.00 0.00 41.67 4.02
5229 15417 0.179258 GAACGCAAATCGACGACCAC 60.179 55.000 0.00 0.00 41.67 4.16
5230 15418 1.562575 AACGCAAATCGACGACCACC 61.563 55.000 0.00 0.00 41.67 4.61
5231 15419 2.776072 GCAAATCGACGACCACCG 59.224 61.111 0.00 0.00 45.44 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.786495 CCGCGGCTGTAGGATGAGT 61.786 63.158 14.67 0.00 0.00 3.41
5 6 2.028190 CCGCGGCTGTAGGATGAG 59.972 66.667 14.67 0.00 0.00 2.90
53 54 1.400530 CGGGAGCGTAGAGGGGAATT 61.401 60.000 0.00 0.00 0.00 2.17
380 465 6.324512 TGGGCAGAATTCCGTAGTAAGTAATA 59.675 38.462 0.65 0.00 0.00 0.98
381 466 5.129815 TGGGCAGAATTCCGTAGTAAGTAAT 59.870 40.000 0.65 0.00 0.00 1.89
382 467 4.467082 TGGGCAGAATTCCGTAGTAAGTAA 59.533 41.667 0.65 0.00 0.00 2.24
384 469 2.835764 TGGGCAGAATTCCGTAGTAAGT 59.164 45.455 0.65 0.00 0.00 2.24
385 470 3.458189 CTGGGCAGAATTCCGTAGTAAG 58.542 50.000 0.65 0.00 0.00 2.34
783 2545 7.391620 TCTACGATTTTGAAACAGGGTAATCT 58.608 34.615 0.00 0.00 0.00 2.40
786 2548 6.596497 GGATCTACGATTTTGAAACAGGGTAA 59.404 38.462 0.00 0.00 0.00 2.85
844 2606 8.895932 ATCGAAAATAAAAATACACTGCTCAC 57.104 30.769 0.00 0.00 0.00 3.51
955 2720 9.283768 TCTAGAATTTAAACTCAATGCTCAACA 57.716 29.630 0.00 0.00 0.00 3.33
980 2750 2.307768 TGTCTAGGTCGTGGATGGATC 58.692 52.381 0.00 0.00 0.00 3.36
1215 2985 3.468458 AAAAGGTGGGGGAGGGGGA 62.468 63.158 0.00 0.00 0.00 4.81
1245 3017 4.457949 TCGTCAGTTGTCAGTGAATAGCTA 59.542 41.667 0.00 0.00 33.93 3.32
1246 3018 3.255888 TCGTCAGTTGTCAGTGAATAGCT 59.744 43.478 0.00 0.00 33.93 3.32
1547 3357 6.515272 AAGGACCACAAATATCATCACAAC 57.485 37.500 0.00 0.00 0.00 3.32
1865 5762 6.939730 TGATTCAGTTGCAACAGGATAGTTTA 59.060 34.615 30.11 11.84 0.00 2.01
1882 5779 8.814931 TGATTCCACCAAAATATTTGATTCAGT 58.185 29.630 0.39 0.00 0.00 3.41
1965 5862 6.947903 TTCAATATTGCGTAACTCGTTACA 57.052 33.333 17.25 1.92 44.12 2.41
1999 5897 5.292765 CAGGCAATATGTGTAGACTACCAG 58.707 45.833 10.14 0.00 0.00 4.00
2055 5953 0.889186 CACTTTGCCGCTGTACCCTT 60.889 55.000 0.00 0.00 0.00 3.95
2056 5954 1.302511 CACTTTGCCGCTGTACCCT 60.303 57.895 0.00 0.00 0.00 4.34
2123 6029 7.436933 TGAGCTTCATGTACCATATAAGAGTG 58.563 38.462 0.00 0.00 0.00 3.51
2544 6578 0.810823 TTGCAAGCAAAGCAAGCACC 60.811 50.000 4.79 0.00 46.13 5.01
2651 6690 8.163408 AGTTAGTTGCTGCATAAATATATGGGA 58.837 33.333 1.84 0.00 39.49 4.37
3083 7187 2.564947 AGTACTCTCTGAAAGCCTGTGG 59.435 50.000 0.00 0.00 0.00 4.17
3207 7317 1.203287 TGCACGACTTCAGATCCTCAG 59.797 52.381 0.00 0.00 0.00 3.35
3595 10180 6.403866 AGAGACATGGAGATGTTATCAGAC 57.596 41.667 0.00 0.00 43.22 3.51
3866 10517 9.925268 GAAATATGCTTTAAAATTGCAATGGAG 57.075 29.630 13.82 7.87 40.24 3.86
4019 10740 9.338291 GTGATCTAAACGGTTTTAAATTTCCTC 57.662 33.333 11.87 0.00 0.00 3.71
4074 10806 5.995282 CCTGTTCTATTAATGGAATACGCCA 59.005 40.000 16.19 8.94 43.23 5.69
4209 10946 4.293415 CCAGAGAAACATGTTGTTGCTTC 58.707 43.478 12.82 4.68 45.92 3.86
4223 10987 0.843309 TGGTTGGTCAGCCAGAGAAA 59.157 50.000 2.35 0.00 46.91 2.52
4251 11015 2.899838 GCATCGCCGCAATGGGTA 60.900 61.111 0.00 0.00 38.63 3.69
4293 11057 5.402398 GGAGTGTTTTCATCATTTGGTAGC 58.598 41.667 0.00 0.00 0.00 3.58
4407 11171 2.498078 GGTGACTTTTGTTTTCCCCACA 59.502 45.455 0.00 0.00 0.00 4.17
4583 11519 8.813282 CAAATCAACAATAACACATGGATCATG 58.187 33.333 6.37 6.37 46.18 3.07
4600 11536 5.270083 CAGTAAGAACGCAACAAATCAACA 58.730 37.500 0.00 0.00 0.00 3.33
4650 11593 5.195185 TGTCATGTGATGCTTGGTGATAAT 58.805 37.500 0.00 0.00 0.00 1.28
4677 11620 9.369672 TGGTAGTTTTTGGTTAAATACTTGGAT 57.630 29.630 0.00 0.00 38.47 3.41
4678 11621 8.631797 GTGGTAGTTTTTGGTTAAATACTTGGA 58.368 33.333 0.00 0.00 38.47 3.53
4679 11622 8.414778 TGTGGTAGTTTTTGGTTAAATACTTGG 58.585 33.333 0.00 0.00 38.47 3.61
4680 11623 9.974980 ATGTGGTAGTTTTTGGTTAAATACTTG 57.025 29.630 0.00 0.00 38.47 3.16
4686 12111 7.488471 CGTGAAATGTGGTAGTTTTTGGTTAAA 59.512 33.333 0.00 0.00 0.00 1.52
4689 12114 5.344884 CGTGAAATGTGGTAGTTTTTGGTT 58.655 37.500 0.00 0.00 0.00 3.67
4692 12117 5.176407 TCCGTGAAATGTGGTAGTTTTTG 57.824 39.130 0.00 0.00 0.00 2.44
4713 12138 4.210746 GGGAGTAGTTTTCTGTCACGTTTC 59.789 45.833 0.00 0.00 0.00 2.78
4716 12141 2.963782 AGGGAGTAGTTTTCTGTCACGT 59.036 45.455 0.00 0.00 0.00 4.49
4718 12143 3.323979 TGGAGGGAGTAGTTTTCTGTCAC 59.676 47.826 0.00 0.00 0.00 3.67
4720 12145 4.828072 ATGGAGGGAGTAGTTTTCTGTC 57.172 45.455 0.00 0.00 0.00 3.51
4721 12146 4.019231 GGAATGGAGGGAGTAGTTTTCTGT 60.019 45.833 0.00 0.00 0.00 3.41
4722 12147 4.019321 TGGAATGGAGGGAGTAGTTTTCTG 60.019 45.833 0.00 0.00 0.00 3.02
4724 12149 4.569719 TGGAATGGAGGGAGTAGTTTTC 57.430 45.455 0.00 0.00 0.00 2.29
4726 12151 5.333566 TTTTGGAATGGAGGGAGTAGTTT 57.666 39.130 0.00 0.00 0.00 2.66
4733 12158 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
4734 12159 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
4735 12160 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
4736 12161 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
4738 12163 3.569701 AGGCGCACTATATTTTGGAATGG 59.430 43.478 10.83 0.00 0.00 3.16
4739 12164 4.539870 CAGGCGCACTATATTTTGGAATG 58.460 43.478 10.83 0.00 0.00 2.67
4740 12165 3.004734 GCAGGCGCACTATATTTTGGAAT 59.995 43.478 10.83 0.00 38.36 3.01
4741 12166 2.357637 GCAGGCGCACTATATTTTGGAA 59.642 45.455 10.83 0.00 38.36 3.53
4742 12167 1.946768 GCAGGCGCACTATATTTTGGA 59.053 47.619 10.83 0.00 38.36 3.53
4743 12168 1.675483 TGCAGGCGCACTATATTTTGG 59.325 47.619 10.83 0.00 45.36 3.28
4757 12182 3.959991 GACCTCGGGAAGTGCAGGC 62.960 68.421 0.00 0.00 0.00 4.85
4758 12183 0.970937 TAGACCTCGGGAAGTGCAGG 60.971 60.000 0.00 0.00 0.00 4.85
4760 12185 0.606604 GTTAGACCTCGGGAAGTGCA 59.393 55.000 0.00 0.00 0.00 4.57
4761 12186 0.896226 AGTTAGACCTCGGGAAGTGC 59.104 55.000 0.00 0.00 0.00 4.40
4762 12187 3.006537 TCAAAGTTAGACCTCGGGAAGTG 59.993 47.826 0.00 0.00 0.00 3.16
4763 12188 3.006644 GTCAAAGTTAGACCTCGGGAAGT 59.993 47.826 0.00 0.00 0.00 3.01
4764 12189 3.586892 GTCAAAGTTAGACCTCGGGAAG 58.413 50.000 0.00 0.00 0.00 3.46
4782 12207 9.535170 TGGTCTTATTGGTTAAATTTATGGTCA 57.465 29.630 0.00 0.00 0.00 4.02
4788 12213 8.024285 CGCAGTTGGTCTTATTGGTTAAATTTA 58.976 33.333 0.00 0.00 0.00 1.40
4789 12214 6.866248 CGCAGTTGGTCTTATTGGTTAAATTT 59.134 34.615 0.00 0.00 0.00 1.82
4791 12216 5.105917 CCGCAGTTGGTCTTATTGGTTAAAT 60.106 40.000 0.00 0.00 0.00 1.40
4792 12217 4.216687 CCGCAGTTGGTCTTATTGGTTAAA 59.783 41.667 0.00 0.00 0.00 1.52
4793 12218 3.754323 CCGCAGTTGGTCTTATTGGTTAA 59.246 43.478 0.00 0.00 0.00 2.01
4794 12219 3.340034 CCGCAGTTGGTCTTATTGGTTA 58.660 45.455 0.00 0.00 0.00 2.85
4796 12221 1.821216 CCGCAGTTGGTCTTATTGGT 58.179 50.000 0.00 0.00 0.00 3.67
4798 12223 0.096976 CGCCGCAGTTGGTCTTATTG 59.903 55.000 0.00 0.00 0.00 1.90
4800 12225 1.449601 CCGCCGCAGTTGGTCTTAT 60.450 57.895 0.00 0.00 0.00 1.73
4806 12231 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
4856 15044 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
4857 15045 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
4859 15047 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
4860 15048 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
4861 15049 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
4886 15074 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
4890 15078 8.050930 ACCATAAATTTAACTACCAAGACCGAT 58.949 33.333 1.21 0.00 0.00 4.18
4891 15079 7.396418 ACCATAAATTTAACTACCAAGACCGA 58.604 34.615 1.21 0.00 0.00 4.69
4892 15080 7.334921 TGACCATAAATTTAACTACCAAGACCG 59.665 37.037 1.21 0.00 0.00 4.79
4902 15090 9.476202 GCTTCAACTTTGACCATAAATTTAACT 57.524 29.630 1.21 0.00 36.83 2.24
4903 15091 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
4904 15092 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
4905 15093 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
4907 15095 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
4908 15096 5.460646 CGTGCTTCAACTTTGACCATAAAT 58.539 37.500 0.00 0.00 36.83 1.40
4909 15097 4.261405 CCGTGCTTCAACTTTGACCATAAA 60.261 41.667 0.00 0.00 36.83 1.40
4910 15098 3.252215 CCGTGCTTCAACTTTGACCATAA 59.748 43.478 0.00 0.00 36.83 1.90
4911 15099 2.811431 CCGTGCTTCAACTTTGACCATA 59.189 45.455 0.00 0.00 36.83 2.74
4913 15101 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
4914 15102 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
4915 15103 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
4916 15104 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
4917 15105 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
4920 15108 1.568504 TCTATCCCCGTGCTTCAACT 58.431 50.000 0.00 0.00 0.00 3.16
4921 15109 2.093658 TCTTCTATCCCCGTGCTTCAAC 60.094 50.000 0.00 0.00 0.00 3.18
4922 15110 2.184533 TCTTCTATCCCCGTGCTTCAA 58.815 47.619 0.00 0.00 0.00 2.69
4923 15111 1.860641 TCTTCTATCCCCGTGCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
4924 15112 2.827652 CTTCTTCTATCCCCGTGCTTC 58.172 52.381 0.00 0.00 0.00 3.86
4927 15115 0.178068 TGCTTCTTCTATCCCCGTGC 59.822 55.000 0.00 0.00 0.00 5.34
4928 15116 1.482593 AGTGCTTCTTCTATCCCCGTG 59.517 52.381 0.00 0.00 0.00 4.94
4929 15117 1.867363 AGTGCTTCTTCTATCCCCGT 58.133 50.000 0.00 0.00 0.00 5.28
4932 15120 5.525378 CACAATGTAGTGCTTCTTCTATCCC 59.475 44.000 0.00 0.00 32.04 3.85
4933 15121 5.525378 CCACAATGTAGTGCTTCTTCTATCC 59.475 44.000 0.00 0.00 38.18 2.59
4936 15124 5.738619 TCCACAATGTAGTGCTTCTTCTA 57.261 39.130 0.00 0.00 38.18 2.10
4938 15126 5.392380 CCATTCCACAATGTAGTGCTTCTTC 60.392 44.000 0.00 0.00 38.22 2.87
4939 15127 4.460382 CCATTCCACAATGTAGTGCTTCTT 59.540 41.667 0.00 0.00 38.22 2.52
4940 15128 4.012374 CCATTCCACAATGTAGTGCTTCT 58.988 43.478 0.00 0.00 38.22 2.85
4943 15131 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
4946 15134 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
4948 15136 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
4950 15138 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
4951 15139 2.509964 GGTACTCCCTCCATTCCACAAT 59.490 50.000 0.00 0.00 0.00 2.71
4953 15141 1.203376 TGGTACTCCCTCCATTCCACA 60.203 52.381 0.00 0.00 0.00 4.17
4954 15142 1.209747 GTGGTACTCCCTCCATTCCAC 59.790 57.143 0.00 0.00 37.33 4.02
4956 15144 1.880941 AGTGGTACTCCCTCCATTCC 58.119 55.000 0.00 0.00 36.09 3.01
4957 15145 4.679905 CGTAAAGTGGTACTCCCTCCATTC 60.680 50.000 0.00 0.00 36.09 2.67
4958 15146 3.197116 CGTAAAGTGGTACTCCCTCCATT 59.803 47.826 0.00 0.00 36.09 3.16
4960 15148 2.173519 CGTAAAGTGGTACTCCCTCCA 58.826 52.381 0.00 0.00 0.00 3.86
4961 15149 2.450476 TCGTAAAGTGGTACTCCCTCC 58.550 52.381 0.00 0.00 0.00 4.30
4962 15150 4.732672 AATCGTAAAGTGGTACTCCCTC 57.267 45.455 0.00 0.00 0.00 4.30
4963 15151 5.221783 ACAAAATCGTAAAGTGGTACTCCCT 60.222 40.000 0.00 0.00 0.00 4.20
4964 15152 4.999311 ACAAAATCGTAAAGTGGTACTCCC 59.001 41.667 0.00 0.00 0.00 4.30
4965 15153 5.616204 GCACAAAATCGTAAAGTGGTACTCC 60.616 44.000 0.00 0.00 0.00 3.85
4966 15154 5.379827 GCACAAAATCGTAAAGTGGTACTC 58.620 41.667 0.00 0.00 0.00 2.59
4967 15155 4.084223 CGCACAAAATCGTAAAGTGGTACT 60.084 41.667 0.00 0.00 0.00 2.73
4968 15156 4.145997 CGCACAAAATCGTAAAGTGGTAC 58.854 43.478 0.00 0.00 0.00 3.34
4969 15157 3.186817 CCGCACAAAATCGTAAAGTGGTA 59.813 43.478 0.00 0.00 0.00 3.25
4971 15159 2.224549 TCCGCACAAAATCGTAAAGTGG 59.775 45.455 0.00 0.00 0.00 4.00
4972 15160 3.529634 TCCGCACAAAATCGTAAAGTG 57.470 42.857 0.00 0.00 0.00 3.16
4973 15161 4.555348 TTTCCGCACAAAATCGTAAAGT 57.445 36.364 0.00 0.00 0.00 2.66
4974 15162 4.973663 AGTTTTCCGCACAAAATCGTAAAG 59.026 37.500 0.00 0.00 0.00 1.85
4975 15163 4.922719 AGTTTTCCGCACAAAATCGTAAA 58.077 34.783 0.00 0.00 0.00 2.01
4976 15164 4.555348 AGTTTTCCGCACAAAATCGTAA 57.445 36.364 0.00 0.00 0.00 3.18
4977 15165 4.083908 GGTAGTTTTCCGCACAAAATCGTA 60.084 41.667 0.00 0.00 0.00 3.43
4978 15166 3.304190 GGTAGTTTTCCGCACAAAATCGT 60.304 43.478 0.00 0.00 0.00 3.73
4980 15168 4.231718 TGGTAGTTTTCCGCACAAAATC 57.768 40.909 0.00 0.00 0.00 2.17
4981 15169 4.864704 ATGGTAGTTTTCCGCACAAAAT 57.135 36.364 0.00 0.00 0.00 1.82
4982 15170 4.657436 AATGGTAGTTTTCCGCACAAAA 57.343 36.364 0.00 0.00 0.00 2.44
4985 15173 4.142138 ACAAAAATGGTAGTTTTCCGCACA 60.142 37.500 0.00 0.00 31.29 4.57
4986 15174 4.364860 ACAAAAATGGTAGTTTTCCGCAC 58.635 39.130 0.00 0.00 31.29 5.34
4987 15175 4.098044 TGACAAAAATGGTAGTTTTCCGCA 59.902 37.500 0.00 0.00 31.29 5.69
4988 15176 4.612943 TGACAAAAATGGTAGTTTTCCGC 58.387 39.130 0.00 0.00 31.29 5.54
4989 15177 8.980143 ATTATGACAAAAATGGTAGTTTTCCG 57.020 30.769 0.00 0.00 31.29 4.30
4991 15179 9.072294 CGGATTATGACAAAAATGGTAGTTTTC 57.928 33.333 0.00 0.00 31.29 2.29
4993 15181 8.026607 CACGGATTATGACAAAAATGGTAGTTT 58.973 33.333 0.00 0.00 0.00 2.66
4996 15184 6.494842 CCACGGATTATGACAAAAATGGTAG 58.505 40.000 0.00 0.00 0.00 3.18
4997 15185 5.163602 GCCACGGATTATGACAAAAATGGTA 60.164 40.000 0.00 0.00 0.00 3.25
4999 15187 4.111916 GCCACGGATTATGACAAAAATGG 58.888 43.478 0.00 0.00 0.00 3.16
5000 15188 4.742417 TGCCACGGATTATGACAAAAATG 58.258 39.130 0.00 0.00 0.00 2.32
5003 15191 4.855715 TTTGCCACGGATTATGACAAAA 57.144 36.364 0.00 0.00 0.00 2.44
5004 15192 4.855715 TTTTGCCACGGATTATGACAAA 57.144 36.364 0.00 0.00 0.00 2.83
5024 15212 3.805971 CGGTTTCGAGACTTGGTAGTTTT 59.194 43.478 6.02 0.00 39.00 2.43
5025 15213 3.068590 TCGGTTTCGAGACTTGGTAGTTT 59.931 43.478 6.02 0.00 40.88 2.66
5026 15214 2.624838 TCGGTTTCGAGACTTGGTAGTT 59.375 45.455 6.02 0.00 40.88 2.24
5039 15227 1.693083 GGGTGAAGCGATCGGTTTCG 61.693 60.000 30.75 0.00 38.57 3.46
5041 15229 1.740296 CGGGTGAAGCGATCGGTTT 60.740 57.895 30.75 16.35 35.84 3.27
5042 15230 2.125673 CGGGTGAAGCGATCGGTT 60.126 61.111 30.68 30.68 38.65 4.44
5043 15231 3.379445 ACGGGTGAAGCGATCGGT 61.379 61.111 15.21 15.21 0.00 4.69
5044 15232 2.885644 CACGGGTGAAGCGATCGG 60.886 66.667 18.30 0.00 0.00 4.18
5046 15234 0.108520 TTACCACGGGTGAAGCGATC 60.109 55.000 0.00 0.00 36.19 3.69
5047 15235 0.108329 CTTACCACGGGTGAAGCGAT 60.108 55.000 0.00 0.00 36.19 4.58
5048 15236 1.290955 CTTACCACGGGTGAAGCGA 59.709 57.895 0.00 0.00 36.19 4.93
5050 15238 1.302192 TGCTTACCACGGGTGAAGC 60.302 57.895 12.58 12.58 39.90 3.86
5051 15239 0.953960 GGTGCTTACCACGGGTGAAG 60.954 60.000 0.00 0.00 45.62 3.02
5052 15240 1.071814 GGTGCTTACCACGGGTGAA 59.928 57.895 0.00 0.00 45.62 3.18
5053 15241 1.697082 TTGGTGCTTACCACGGGTGA 61.697 55.000 0.00 0.00 45.62 4.02
5057 15245 2.172851 TAGTTTGGTGCTTACCACGG 57.827 50.000 0.00 0.00 45.62 4.94
5058 15246 2.224784 GGTTAGTTTGGTGCTTACCACG 59.775 50.000 0.00 0.00 45.62 4.94
5059 15247 3.215975 TGGTTAGTTTGGTGCTTACCAC 58.784 45.455 0.00 0.00 39.71 4.16
5060 15248 3.482436 CTGGTTAGTTTGGTGCTTACCA 58.518 45.455 0.00 0.00 41.53 3.25
5061 15249 2.228103 GCTGGTTAGTTTGGTGCTTACC 59.772 50.000 0.00 0.00 36.51 2.85
5062 15250 2.228103 GGCTGGTTAGTTTGGTGCTTAC 59.772 50.000 0.00 0.00 0.00 2.34
5063 15251 2.510613 GGCTGGTTAGTTTGGTGCTTA 58.489 47.619 0.00 0.00 0.00 3.09
5065 15253 0.889186 CGGCTGGTTAGTTTGGTGCT 60.889 55.000 0.00 0.00 0.00 4.40
5066 15254 1.579429 CGGCTGGTTAGTTTGGTGC 59.421 57.895 0.00 0.00 0.00 5.01
5067 15255 2.253513 CCGGCTGGTTAGTTTGGTG 58.746 57.895 2.29 0.00 0.00 4.17
5068 15256 4.813346 CCGGCTGGTTAGTTTGGT 57.187 55.556 2.29 0.00 0.00 3.67
5078 15266 4.636435 AAACGTGGGACCGGCTGG 62.636 66.667 11.02 11.02 42.84 4.85
5079 15267 3.047877 GAAACGTGGGACCGGCTG 61.048 66.667 0.00 0.00 0.00 4.85
5081 15269 3.047877 CTGAAACGTGGGACCGGC 61.048 66.667 0.00 0.00 0.00 6.13
5082 15270 2.358247 CCTGAAACGTGGGACCGG 60.358 66.667 0.00 0.00 0.00 5.28
5083 15271 3.047877 GCCTGAAACGTGGGACCG 61.048 66.667 0.00 0.00 0.00 4.79
5084 15272 3.047877 CGCCTGAAACGTGGGACC 61.048 66.667 0.00 0.00 0.00 4.46
5089 15277 2.176546 CATGGCGCCTGAAACGTG 59.823 61.111 29.70 7.49 0.00 4.49
5090 15278 3.055719 CCATGGCGCCTGAAACGT 61.056 61.111 29.70 0.00 0.00 3.99
5091 15279 3.055719 ACCATGGCGCCTGAAACG 61.056 61.111 29.70 11.24 0.00 3.60
5093 15281 2.676121 CCACCATGGCGCCTGAAA 60.676 61.111 29.70 7.47 0.00 2.69
5120 15308 4.125097 CGTTAACGTGCGTCGGGC 62.125 66.667 19.75 0.00 44.69 6.13
5121 15309 3.472298 CCGTTAACGTGCGTCGGG 61.472 66.667 25.15 4.85 44.69 5.14
5122 15310 4.125097 GCCGTTAACGTGCGTCGG 62.125 66.667 25.15 15.72 44.69 4.79
5123 15311 4.458067 CGCCGTTAACGTGCGTCG 62.458 66.667 34.85 22.79 46.11 5.12
5127 15315 2.276430 GATGCGCCGTTAACGTGC 60.276 61.111 26.30 26.30 38.66 5.34
5128 15316 2.384309 TGGATGCGCCGTTAACGTG 61.384 57.895 25.15 18.06 40.66 4.49
5129 15317 2.048033 TGGATGCGCCGTTAACGT 60.048 55.556 25.15 7.51 40.66 3.99
5130 15318 2.398036 GTGGATGCGCCGTTAACG 59.602 61.111 20.99 20.99 40.66 3.18
5131 15319 2.398036 CGTGGATGCGCCGTTAAC 59.602 61.111 4.18 0.00 40.66 2.01
5132 15320 2.816083 CCGTGGATGCGCCGTTAA 60.816 61.111 4.18 0.00 40.66 2.01
5133 15321 3.993376 GACCGTGGATGCGCCGTTA 62.993 63.158 4.18 0.00 40.66 3.18
5139 15327 2.433491 TTTCCGACCGTGGATGCG 60.433 61.111 0.00 0.00 38.00 4.73
5140 15328 2.736682 CGTTTCCGACCGTGGATGC 61.737 63.158 0.00 0.00 38.00 3.91
5141 15329 2.098233 CCGTTTCCGACCGTGGATG 61.098 63.158 0.00 0.00 38.00 3.51
5142 15330 2.263540 CCGTTTCCGACCGTGGAT 59.736 61.111 0.00 0.00 38.00 3.41
5143 15331 4.668118 GCCGTTTCCGACCGTGGA 62.668 66.667 0.00 0.00 35.63 4.02
5157 15345 2.024871 GATCCTCTGACGACGCCG 59.975 66.667 0.00 0.00 42.50 6.46
5158 15346 2.024871 CGATCCTCTGACGACGCC 59.975 66.667 0.00 0.00 0.00 5.68
5159 15347 2.024871 CCGATCCTCTGACGACGC 59.975 66.667 0.00 0.00 0.00 5.19
5160 15348 2.024871 GCCGATCCTCTGACGACG 59.975 66.667 0.00 0.00 0.00 5.12
5161 15349 0.318275 GATGCCGATCCTCTGACGAC 60.318 60.000 0.00 0.00 0.00 4.34
5162 15350 0.751643 TGATGCCGATCCTCTGACGA 60.752 55.000 0.00 0.00 0.00 4.20
5163 15351 0.103026 TTGATGCCGATCCTCTGACG 59.897 55.000 0.00 0.00 0.00 4.35
5164 15352 2.315925 TTTGATGCCGATCCTCTGAC 57.684 50.000 0.00 0.00 0.00 3.51
5165 15353 2.486013 CCATTTGATGCCGATCCTCTGA 60.486 50.000 0.00 0.00 0.00 3.27
5166 15354 1.878088 CCATTTGATGCCGATCCTCTG 59.122 52.381 0.00 0.00 0.00 3.35
5167 15355 1.816961 GCCATTTGATGCCGATCCTCT 60.817 52.381 0.00 0.00 0.00 3.69
5168 15356 0.595095 GCCATTTGATGCCGATCCTC 59.405 55.000 0.00 0.00 0.00 3.71
5169 15357 0.825010 GGCCATTTGATGCCGATCCT 60.825 55.000 0.00 0.00 38.00 3.24
5170 15358 1.662044 GGCCATTTGATGCCGATCC 59.338 57.895 0.00 0.00 38.00 3.36
5175 15363 4.225703 GGCCGGCCATTTGATGCC 62.226 66.667 40.73 8.62 44.41 4.40
5176 15364 4.225703 GGGCCGGCCATTTGATGC 62.226 66.667 44.46 22.62 37.98 3.91
5177 15365 3.539791 GGGGCCGGCCATTTGATG 61.540 66.667 44.46 0.00 37.98 3.07
5178 15366 3.393743 ATGGGGCCGGCCATTTGAT 62.394 57.895 44.46 24.97 37.98 2.57
5179 15367 4.073025 ATGGGGCCGGCCATTTGA 62.073 61.111 44.46 23.88 37.98 2.69
5180 15368 3.852307 CATGGGGCCGGCCATTTG 61.852 66.667 44.46 31.96 37.98 2.32
5181 15369 3.922116 AACATGGGGCCGGCCATTT 62.922 57.895 44.46 26.18 37.98 2.32
5182 15370 3.922116 AAACATGGGGCCGGCCATT 62.922 57.895 44.46 26.56 37.98 3.16
5183 15371 3.922116 AAAACATGGGGCCGGCCAT 62.922 57.895 44.46 29.12 37.98 4.40
5184 15372 4.629958 AAAACATGGGGCCGGCCA 62.630 61.111 44.46 28.13 37.98 5.36
5185 15373 4.081185 CAAAACATGGGGCCGGCC 62.081 66.667 38.57 38.57 0.00 6.13
5186 15374 2.358372 ATCAAAACATGGGGCCGGC 61.358 57.895 21.18 21.18 0.00 6.13
5187 15375 1.516892 CATCAAAACATGGGGCCGG 59.483 57.895 0.00 0.00 0.00 6.13
5188 15376 1.153588 GCATCAAAACATGGGGCCG 60.154 57.895 0.00 0.00 0.00 6.13
5189 15377 0.391528 GTGCATCAAAACATGGGGCC 60.392 55.000 0.00 0.00 0.00 5.80
5190 15378 0.609662 AGTGCATCAAAACATGGGGC 59.390 50.000 0.00 0.00 0.00 5.80
5191 15379 1.894466 TCAGTGCATCAAAACATGGGG 59.106 47.619 0.00 0.00 0.00 4.96
5192 15380 3.319755 GTTCAGTGCATCAAAACATGGG 58.680 45.455 0.00 0.00 0.00 4.00
5193 15381 2.981805 CGTTCAGTGCATCAAAACATGG 59.018 45.455 0.00 0.00 0.00 3.66
5194 15382 2.406024 GCGTTCAGTGCATCAAAACATG 59.594 45.455 0.00 0.00 0.00 3.21
5195 15383 2.034432 TGCGTTCAGTGCATCAAAACAT 59.966 40.909 0.00 0.00 37.44 2.71
5196 15384 1.403323 TGCGTTCAGTGCATCAAAACA 59.597 42.857 0.00 0.00 37.44 2.83
5197 15385 2.118228 TGCGTTCAGTGCATCAAAAC 57.882 45.000 0.00 0.00 37.44 2.43
5198 15386 2.859526 TTGCGTTCAGTGCATCAAAA 57.140 40.000 0.00 0.00 42.84 2.44
5199 15387 2.859526 TTTGCGTTCAGTGCATCAAA 57.140 40.000 0.00 0.00 42.84 2.69
5200 15388 2.665245 CGATTTGCGTTCAGTGCATCAA 60.665 45.455 0.00 0.00 42.84 2.57
5201 15389 1.136000 CGATTTGCGTTCAGTGCATCA 60.136 47.619 0.00 0.00 42.84 3.07
5202 15390 1.128507 TCGATTTGCGTTCAGTGCATC 59.871 47.619 0.00 0.00 42.84 3.91
5203 15391 1.135972 GTCGATTTGCGTTCAGTGCAT 60.136 47.619 0.00 0.00 42.84 3.96
5204 15392 0.234625 GTCGATTTGCGTTCAGTGCA 59.765 50.000 0.00 0.00 41.80 4.57
5205 15393 0.785708 CGTCGATTTGCGTTCAGTGC 60.786 55.000 0.00 0.00 41.80 4.40
5206 15394 0.781787 TCGTCGATTTGCGTTCAGTG 59.218 50.000 0.00 0.00 41.80 3.66
5207 15395 0.782384 GTCGTCGATTTGCGTTCAGT 59.218 50.000 0.00 0.00 41.80 3.41
5208 15396 0.093026 GGTCGTCGATTTGCGTTCAG 59.907 55.000 0.00 0.00 41.80 3.02
5209 15397 0.597898 TGGTCGTCGATTTGCGTTCA 60.598 50.000 0.00 0.00 41.80 3.18
5210 15398 0.179258 GTGGTCGTCGATTTGCGTTC 60.179 55.000 0.00 0.00 41.80 3.95
5211 15399 1.562575 GGTGGTCGTCGATTTGCGTT 61.563 55.000 0.00 0.00 41.80 4.84
5212 15400 2.025418 GGTGGTCGTCGATTTGCGT 61.025 57.895 0.00 0.00 41.80 5.24
5213 15401 2.776072 GGTGGTCGTCGATTTGCG 59.224 61.111 0.00 0.00 42.69 4.85
5214 15402 2.776072 CGGTGGTCGTCGATTTGC 59.224 61.111 0.00 0.00 0.00 3.68
5231 15419 5.351740 CCAAGAAGATTTAGAGGTCGGAAAC 59.648 44.000 0.00 0.00 0.00 2.78
5232 15420 5.488341 CCAAGAAGATTTAGAGGTCGGAAA 58.512 41.667 0.00 0.00 0.00 3.13
5233 15421 4.623171 GCCAAGAAGATTTAGAGGTCGGAA 60.623 45.833 0.00 0.00 0.00 4.30
5234 15422 3.118738 GCCAAGAAGATTTAGAGGTCGGA 60.119 47.826 0.00 0.00 0.00 4.55
5235 15423 3.198872 GCCAAGAAGATTTAGAGGTCGG 58.801 50.000 0.00 0.00 0.00 4.79
5236 15424 3.861840 TGCCAAGAAGATTTAGAGGTCG 58.138 45.455 0.00 0.00 0.00 4.79
5237 15425 3.625313 GCTGCCAAGAAGATTTAGAGGTC 59.375 47.826 0.00 0.00 0.00 3.85
5238 15426 3.265479 AGCTGCCAAGAAGATTTAGAGGT 59.735 43.478 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.