Multiple sequence alignment - TraesCS5A01G283300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G283300 chr5A 100.000 5479 0 0 1 5479 491575004 491569526 0.000000e+00 10118.0
1 TraesCS5A01G283300 chr5A 91.262 1236 62 24 2009 3222 491588767 491587556 0.000000e+00 1642.0
2 TraesCS5A01G283300 chr5A 96.869 543 17 0 1 543 8157760 8157218 0.000000e+00 909.0
3 TraesCS5A01G283300 chr5A 91.808 647 31 6 3208 3854 491587540 491586916 0.000000e+00 881.0
4 TraesCS5A01G283300 chr5A 98.987 395 4 0 5085 5479 491585046 491584652 0.000000e+00 708.0
5 TraesCS5A01G283300 chr5A 86.189 572 48 10 1410 1954 491589353 491588786 1.700000e-164 590.0
6 TraesCS5A01G283300 chr5A 89.260 419 36 4 4164 4579 491586178 491585766 2.930000e-142 516.0
7 TraesCS5A01G283300 chr5A 88.631 431 31 6 5058 5479 489662563 489662142 4.900000e-140 508.0
8 TraesCS5A01G283300 chr5A 87.674 430 38 9 5058 5479 489678488 489678066 2.290000e-133 486.0
9 TraesCS5A01G283300 chr5A 88.710 310 26 3 3852 4161 491586582 491586282 2.410000e-98 370.0
10 TraesCS5A01G283300 chr5A 92.135 89 3 1 4843 4927 489682885 489682797 7.450000e-24 122.0
11 TraesCS5A01G283300 chr5A 84.559 136 6 10 4789 4910 489678684 489678550 2.680000e-23 121.0
12 TraesCS5A01G283300 chr5B 90.520 1846 117 26 1410 3222 467024786 467022966 0.000000e+00 2386.0
13 TraesCS5A01G283300 chr5B 91.158 622 34 7 3208 3829 467022950 467022350 0.000000e+00 824.0
14 TraesCS5A01G283300 chr5B 91.344 439 22 5 5047 5479 467020443 467020015 2.200000e-163 586.0
15 TraesCS5A01G283300 chr5B 89.786 421 38 4 4172 4590 467021633 467021216 8.080000e-148 534.0
16 TraesCS5A01G283300 chr5B 85.102 443 39 12 5058 5479 465054917 465054481 1.410000e-115 427.0
17 TraesCS5A01G283300 chr5B 86.545 275 27 3 3888 4161 467022020 467021755 1.490000e-75 294.0
18 TraesCS5A01G283300 chr5B 84.513 226 19 12 4824 5048 467020684 467020474 5.560000e-50 209.0
19 TraesCS5A01G283300 chr5B 84.559 136 6 10 4789 4910 465055113 465054979 2.680000e-23 121.0
20 TraesCS5A01G283300 chr5D 88.245 1863 125 32 1410 3222 388599944 388598126 0.000000e+00 2141.0
21 TraesCS5A01G283300 chr5D 89.904 1664 113 26 1460 3103 353968047 353966419 0.000000e+00 2091.0
22 TraesCS5A01G283300 chr5D 88.020 1177 96 21 1754 2916 353971577 353970432 0.000000e+00 1351.0
23 TraesCS5A01G283300 chr5D 89.658 1054 63 15 3988 5011 388383030 388381993 0.000000e+00 1301.0
24 TraesCS5A01G283300 chr5D 89.342 957 58 13 2921 3856 388384387 388383454 0.000000e+00 1162.0
25 TraesCS5A01G283300 chr5D 87.158 1059 91 19 1866 2916 388385515 388384494 0.000000e+00 1160.0
26 TraesCS5A01G283300 chr5D 91.654 647 33 7 3208 3854 388598110 388597485 0.000000e+00 876.0
27 TraesCS5A01G283300 chr5D 90.909 649 35 11 3208 3856 353970065 353969441 0.000000e+00 850.0
28 TraesCS5A01G283300 chr5D 90.601 649 35 10 3208 3856 353959665 353959043 0.000000e+00 837.0
29 TraesCS5A01G283300 chr5D 87.088 759 51 18 3852 4578 353956266 353955523 0.000000e+00 815.0
30 TraesCS5A01G283300 chr5D 94.688 433 13 3 5047 5479 388381836 388381414 0.000000e+00 664.0
31 TraesCS5A01G283300 chr5D 90.498 442 30 2 5038 5479 388592989 388592560 1.710000e-159 573.0
32 TraesCS5A01G283300 chr5D 88.793 464 44 3 4130 4593 353968748 353968293 3.710000e-156 562.0
33 TraesCS5A01G283300 chr5D 90.610 426 22 5 5054 5479 388412889 388412482 2.890000e-152 549.0
34 TraesCS5A01G283300 chr5D 89.976 419 33 4 4164 4579 388596716 388596304 2.910000e-147 532.0
35 TraesCS5A01G283300 chr5D 89.051 411 24 7 5054 5464 353954896 353954507 1.770000e-134 490.0
36 TraesCS5A01G283300 chr5D 89.333 375 26 2 1062 1422 353950376 353950002 5.000000e-125 459.0
37 TraesCS5A01G283300 chr5D 86.885 427 19 14 947 1353 353971989 353971580 1.400000e-120 444.0
38 TraesCS5A01G283300 chr5D 91.139 316 11 5 2921 3222 353970393 353970081 3.950000e-111 412.0
39 TraesCS5A01G283300 chr5D 86.667 360 25 9 1420 1760 388385896 388385541 1.440000e-100 377.0
40 TraesCS5A01G283300 chr5D 86.392 316 35 8 3852 4161 388597144 388596831 6.800000e-89 339.0
41 TraesCS5A01G283300 chr5D 83.333 372 23 19 951 1315 388386360 388386021 1.920000e-79 307.0
42 TraesCS5A01G283300 chr5D 82.993 294 22 11 4601 4880 353955291 353955012 1.970000e-59 241.0
43 TraesCS5A01G283300 chr5D 85.526 152 10 8 4789 4928 386959735 386959584 1.230000e-31 148.0
44 TraesCS5A01G283300 chr5D 92.929 99 4 1 951 1049 388388197 388388102 2.060000e-29 141.0
45 TraesCS5A01G283300 chr5D 92.929 99 4 1 951 1049 388390034 388389939 2.060000e-29 141.0
46 TraesCS5A01G283300 chr5D 85.950 121 4 3 947 1067 353951508 353951401 3.470000e-22 117.0
47 TraesCS5A01G283300 chr5D 80.392 102 5 8 4781 4870 370784862 370784764 4.580000e-06 63.9
48 TraesCS5A01G283300 chr4A 92.330 1043 66 8 3988 5025 45873089 45872056 0.000000e+00 1471.0
49 TraesCS5A01G283300 chr4A 88.586 955 66 19 2921 3856 45874451 45873521 0.000000e+00 1120.0
50 TraesCS5A01G283300 chr4A 85.747 863 76 25 2062 2916 45875313 45874490 0.000000e+00 869.0
51 TraesCS5A01G283300 chr4A 88.911 496 29 7 947 1422 45876327 45875838 6.110000e-164 588.0
52 TraesCS5A01G283300 chr4A 90.709 409 37 1 1522 1930 45875720 45875313 1.340000e-150 544.0
53 TraesCS5A01G283300 chr4A 89.901 406 27 3 5074 5479 45872056 45871665 1.360000e-140 510.0
54 TraesCS5A01G283300 chr4A 90.541 74 3 1 1419 1492 45875792 45875723 1.620000e-15 95.3
55 TraesCS5A01G283300 chr7D 93.291 939 60 3 1 936 528096225 528095287 0.000000e+00 1382.0
56 TraesCS5A01G283300 chr7D 92.111 938 71 3 1 935 89998226 89999163 0.000000e+00 1319.0
57 TraesCS5A01G283300 chr7D 94.074 135 8 0 3148 3282 61433919 61434053 7.190000e-49 206.0
58 TraesCS5A01G283300 chr7D 92.381 105 7 1 4825 4928 437593437 437593333 1.230000e-31 148.0
59 TraesCS5A01G283300 chr4B 90.550 1037 71 17 2119 3147 31869370 31870387 0.000000e+00 1347.0
60 TraesCS5A01G283300 chr4B 90.476 651 36 9 3208 3856 31870520 31871146 0.000000e+00 835.0
61 TraesCS5A01G283300 chr4B 84.836 732 69 19 1407 2109 31866577 31867295 0.000000e+00 699.0
62 TraesCS5A01G283300 chr4B 91.684 469 38 1 3388 3856 356000152 356000619 0.000000e+00 649.0
63 TraesCS5A01G283300 chr4B 89.006 473 39 6 4131 4593 31871779 31872248 1.710000e-159 573.0
64 TraesCS5A01G283300 chr2B 86.811 925 115 7 13 934 584733942 584733022 0.000000e+00 1026.0
65 TraesCS5A01G283300 chr1A 81.513 952 111 27 2934 3853 574801951 574802869 0.000000e+00 723.0
66 TraesCS5A01G283300 chr6D 87.873 569 42 8 4927 5479 106952927 106952370 1.290000e-180 643.0
67 TraesCS5A01G283300 chr6D 94.565 92 1 1 4840 4927 60555646 60555737 7.400000e-29 139.0
68 TraesCS5A01G283300 chr6D 96.154 78 3 0 3148 3225 65465534 65465457 1.600000e-25 128.0
69 TraesCS5A01G283300 chr6A 87.805 574 38 9 4927 5479 130414020 130413458 1.290000e-180 643.0
70 TraesCS5A01G283300 chr3D 94.815 135 7 0 3148 3282 99195441 99195307 1.550000e-50 211.0
71 TraesCS5A01G283300 chr3D 94.815 135 7 0 3148 3282 350636175 350636309 1.550000e-50 211.0
72 TraesCS5A01G283300 chr1D 94.815 135 7 0 3148 3282 450715365 450715231 1.550000e-50 211.0
73 TraesCS5A01G283300 chr1B 97.872 47 1 0 2680 2726 426708 426662 1.260000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G283300 chr5A 491569526 491575004 5478 True 10118.000000 10118 100.000000 1 5479 1 chr5A.!!$R4 5478
1 TraesCS5A01G283300 chr5A 8157218 8157760 542 True 909.000000 909 96.869000 1 543 1 chr5A.!!$R1 542
2 TraesCS5A01G283300 chr5A 491584652 491589353 4701 True 784.500000 1642 91.036000 1410 5479 6 chr5A.!!$R6 4069
3 TraesCS5A01G283300 chr5A 489678066 489678684 618 True 303.500000 486 86.116500 4789 5479 2 chr5A.!!$R5 690
4 TraesCS5A01G283300 chr5B 467020015 467024786 4771 True 805.500000 2386 88.977667 1410 5479 6 chr5B.!!$R2 4069
5 TraesCS5A01G283300 chr5B 465054481 465055113 632 True 274.000000 427 84.830500 4789 5479 2 chr5B.!!$R1 690
6 TraesCS5A01G283300 chr5D 353966419 353971989 5570 True 951.666667 2091 89.275000 947 4593 6 chr5D.!!$R5 3646
7 TraesCS5A01G283300 chr5D 388592560 388599944 7384 True 892.200000 2141 89.353000 1410 5479 5 chr5D.!!$R7 4069
8 TraesCS5A01G283300 chr5D 388381414 388390034 8620 True 656.625000 1301 89.588000 951 5479 8 chr5D.!!$R6 4528
9 TraesCS5A01G283300 chr5D 353950002 353959665 9663 True 493.166667 837 87.502667 947 5464 6 chr5D.!!$R4 4517
10 TraesCS5A01G283300 chr4A 45871665 45876327 4662 True 742.471429 1471 89.532143 947 5479 7 chr4A.!!$R1 4532
11 TraesCS5A01G283300 chr7D 528095287 528096225 938 True 1382.000000 1382 93.291000 1 936 1 chr7D.!!$R2 935
12 TraesCS5A01G283300 chr7D 89998226 89999163 937 False 1319.000000 1319 92.111000 1 935 1 chr7D.!!$F2 934
13 TraesCS5A01G283300 chr4B 31866577 31872248 5671 False 863.500000 1347 88.717000 1407 4593 4 chr4B.!!$F2 3186
14 TraesCS5A01G283300 chr2B 584733022 584733942 920 True 1026.000000 1026 86.811000 13 934 1 chr2B.!!$R1 921
15 TraesCS5A01G283300 chr1A 574801951 574802869 918 False 723.000000 723 81.513000 2934 3853 1 chr1A.!!$F1 919
16 TraesCS5A01G283300 chr6D 106952370 106952927 557 True 643.000000 643 87.873000 4927 5479 1 chr6D.!!$R2 552
17 TraesCS5A01G283300 chr6A 130413458 130414020 562 True 643.000000 643 87.805000 4927 5479 1 chr6A.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 852 0.036010 GCAGACAGCTAGCAGGGAAA 60.036 55.000 18.83 0.00 41.15 3.13 F
913 917 2.125912 GCCAGCGCGAGAAGAAGA 60.126 61.111 12.10 0.00 0.00 2.87 F
985 2826 2.267961 CCGGACAGTAGCAACCCC 59.732 66.667 0.00 0.00 0.00 4.95 F
2536 8419 2.232696 ACCAATATTGCCCGGTTGTTTC 59.767 45.455 10.11 0.00 0.00 2.78 F
3914 12854 1.065491 ACCTGACTGACAGTTGTTGCA 60.065 47.619 10.01 1.63 44.40 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 5487 0.320946 CCACTCGCCGGAAAAAGGTA 60.321 55.00 5.05 0.00 0.00 3.08 R
2347 8228 2.121291 TGCAACCAGTGTCAACAGAA 57.879 45.00 0.00 0.00 0.00 3.02 R
2564 8451 3.068590 ACAACACTTTGCTGCTAATTGCT 59.931 39.13 12.48 0.25 38.24 3.91 R
4298 13462 0.032813 AATGGGTGGCTTCATCTGGG 60.033 55.00 0.00 0.00 0.00 4.45 R
5051 17966 0.442699 GCTGTGATCGTCGTTTTCCC 59.557 55.00 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.561858 GACCCCTACCGGATCTCATAAC 59.438 54.545 9.46 0.00 0.00 1.89
29 31 2.574369 ACCGGATCTCATAACCAACCAA 59.426 45.455 9.46 0.00 0.00 3.67
48 50 3.941483 CCAACACGCAGATCCTTAAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
226 228 4.927267 AGTTACATCAATCCTGACCCAA 57.073 40.909 0.00 0.00 33.30 4.12
447 449 0.180171 CGGAAGTGCCATGGACCATA 59.820 55.000 18.40 0.00 35.94 2.74
489 491 1.732917 CAAGGCACGCAAACTGGAA 59.267 52.632 0.00 0.00 0.00 3.53
614 616 2.660258 ATTAACCCTAGCCAGCGCCG 62.660 60.000 2.29 0.00 34.57 6.46
631 633 2.353607 GCCCATCTCGTAGCGTCG 60.354 66.667 0.00 0.00 0.00 5.12
720 722 1.343789 CATCCTCTCCACATCGCTGAT 59.656 52.381 0.00 0.00 0.00 2.90
792 794 1.401552 CGGAGAAACGTATCGGGTACA 59.598 52.381 0.00 0.00 32.61 2.90
844 846 3.385384 AGCCGCAGACAGCTAGCA 61.385 61.111 18.83 0.00 41.17 3.49
850 852 0.036010 GCAGACAGCTAGCAGGGAAA 60.036 55.000 18.83 0.00 41.15 3.13
876 879 3.365265 GCAGGGACGGCCAAACTG 61.365 66.667 11.00 8.97 45.65 3.16
913 917 2.125912 GCCAGCGCGAGAAGAAGA 60.126 61.111 12.10 0.00 0.00 2.87
940 944 6.709018 CCTAACTTGAGGGAAAAGTTTCAA 57.291 37.500 6.84 0.00 43.60 2.69
941 945 7.290110 CCTAACTTGAGGGAAAAGTTTCAAT 57.710 36.000 6.84 0.00 43.60 2.57
942 946 7.726216 CCTAACTTGAGGGAAAAGTTTCAATT 58.274 34.615 6.84 0.00 43.60 2.32
943 947 7.867909 CCTAACTTGAGGGAAAAGTTTCAATTC 59.132 37.037 6.84 1.59 43.60 2.17
944 948 7.423844 AACTTGAGGGAAAAGTTTCAATTCT 57.576 32.000 6.15 0.00 43.60 2.40
945 949 7.423844 ACTTGAGGGAAAAGTTTCAATTCTT 57.576 32.000 6.15 0.00 38.92 2.52
949 953 6.015434 TGAGGGAAAAGTTTCAATTCTTAGCC 60.015 38.462 6.15 0.00 38.92 3.93
985 2826 2.267961 CCGGACAGTAGCAACCCC 59.732 66.667 0.00 0.00 0.00 4.95
1001 2842 3.652886 CCCCCAAGGCCCAAAATAT 57.347 52.632 0.00 0.00 0.00 1.28
1060 4742 4.622456 GCCCAAACGCACACACGG 62.622 66.667 0.00 0.00 37.37 4.94
1118 4800 4.680237 TTCACCGGAGCGCTGTGG 62.680 66.667 18.48 19.52 0.00 4.17
1366 5068 7.943413 GGTAATTTCTAATTACCTCTCGACC 57.057 40.000 24.17 7.17 46.14 4.79
1367 5069 7.495055 GGTAATTTCTAATTACCTCTCGACCA 58.505 38.462 24.17 0.00 46.14 4.02
1368 5070 7.437565 GGTAATTTCTAATTACCTCTCGACCAC 59.562 40.741 24.17 4.23 46.14 4.16
1369 5071 4.627611 TTCTAATTACCTCTCGACCACG 57.372 45.455 0.00 0.00 41.26 4.94
1370 5072 3.877559 TCTAATTACCTCTCGACCACGA 58.122 45.455 0.00 0.00 46.56 4.35
1393 5095 6.124088 AGCAGTGGATTTTTGTTATCGATC 57.876 37.500 0.00 0.00 0.00 3.69
1455 5235 5.772521 AGTTGAGCATTGCGTTTAAATTCT 58.227 33.333 2.38 0.00 0.00 2.40
1456 5236 6.908825 AGTTGAGCATTGCGTTTAAATTCTA 58.091 32.000 2.38 0.00 0.00 2.10
1457 5237 7.538575 AGTTGAGCATTGCGTTTAAATTCTAT 58.461 30.769 2.38 0.00 0.00 1.98
1458 5238 7.485913 AGTTGAGCATTGCGTTTAAATTCTATG 59.514 33.333 2.38 1.21 0.00 2.23
1531 5311 2.825836 GCGCAATGTCAGGAGGGG 60.826 66.667 0.30 0.00 0.00 4.79
1718 5527 2.813042 GCGAGTGGCTCTGCACTC 60.813 66.667 9.94 9.94 43.05 3.51
1778 5587 2.286523 CGGAGGGACCTGAAGCTGT 61.287 63.158 0.00 0.00 36.31 4.40
1932 5741 8.971321 CCTCTGTAAAACAATCTTTGTCATTTG 58.029 33.333 0.00 0.00 44.59 2.32
2075 5885 8.561536 TTTGTGGTCCTTATATTGATCCTAGA 57.438 34.615 0.00 0.00 0.00 2.43
2130 8006 6.631962 TGACTAAAAGCCTAGCTAGAAGTTC 58.368 40.000 22.70 7.56 38.25 3.01
2154 8031 3.316308 CACTTGTATGGGCAGGCTTAATC 59.684 47.826 0.00 0.00 0.00 1.75
2166 8043 4.517285 CAGGCTTAATCTCTTGGCAGTTA 58.483 43.478 0.00 0.00 0.00 2.24
2186 8063 9.840427 GCAGTTAAGATTATTCAGTTTGCTTTA 57.160 29.630 0.00 0.00 0.00 1.85
2207 8084 7.535258 GCTTTAATTCGTGGTATAATGATGCTG 59.465 37.037 0.00 0.00 0.00 4.41
2347 8228 2.495669 CTGTCCCAGGTGTGTTTTGTTT 59.504 45.455 0.00 0.00 0.00 2.83
2397 8278 7.359598 GCAAACTATCCTATTGTAGCTGAATCG 60.360 40.741 0.00 0.00 0.00 3.34
2434 8316 5.809719 TCATAAATGCAATGACGCTGTTA 57.190 34.783 0.00 0.00 0.00 2.41
2474 8356 5.221541 TGTTCCTTGTGGTTGTTTTCAAGTT 60.222 36.000 0.00 0.00 40.74 2.66
2477 8359 5.477291 TCCTTGTGGTTGTTTTCAAGTTACA 59.523 36.000 0.00 0.00 40.74 2.41
2536 8419 2.232696 ACCAATATTGCCCGGTTGTTTC 59.767 45.455 10.11 0.00 0.00 2.78
2545 8428 2.619646 GCCCGGTTGTTTCACTTCTTTA 59.380 45.455 0.00 0.00 0.00 1.85
2626 8514 7.987458 TGTTTGCAAGGTTTCCAATGTATTTAA 59.013 29.630 0.00 0.00 0.00 1.52
2628 8516 7.296628 TGCAAGGTTTCCAATGTATTTAACT 57.703 32.000 0.00 0.00 0.00 2.24
2629 8517 7.375053 TGCAAGGTTTCCAATGTATTTAACTC 58.625 34.615 0.00 0.00 0.00 3.01
2630 8518 6.811665 GCAAGGTTTCCAATGTATTTAACTCC 59.188 38.462 0.00 0.00 0.00 3.85
2631 8519 7.309805 GCAAGGTTTCCAATGTATTTAACTCCT 60.310 37.037 0.00 0.00 0.00 3.69
2633 8521 9.462606 AAGGTTTCCAATGTATTTAACTCCTAG 57.537 33.333 0.00 0.00 0.00 3.02
2748 8639 4.600692 TTCTTGATCAACTTCGAGACCA 57.399 40.909 3.38 0.00 36.16 4.02
3282 9357 7.502120 TTATGCAGAGATTTTGCCTAAGATC 57.498 36.000 0.00 0.00 40.81 2.75
3283 9358 4.847198 TGCAGAGATTTTGCCTAAGATCA 58.153 39.130 0.00 0.00 40.81 2.92
3284 9359 4.880120 TGCAGAGATTTTGCCTAAGATCAG 59.120 41.667 0.00 0.00 40.81 2.90
3287 9362 6.709846 GCAGAGATTTTGCCTAAGATCAGTAT 59.290 38.462 0.00 0.00 35.54 2.12
3288 9363 7.228308 GCAGAGATTTTGCCTAAGATCAGTATT 59.772 37.037 0.00 0.00 35.54 1.89
3289 9364 9.770097 CAGAGATTTTGCCTAAGATCAGTATTA 57.230 33.333 0.00 0.00 31.62 0.98
3298 9373 9.770097 TGCCTAAGATCAGTATTATCTTCTTTG 57.230 33.333 1.80 0.00 41.61 2.77
3299 9374 9.771534 GCCTAAGATCAGTATTATCTTCTTTGT 57.228 33.333 1.80 0.00 41.61 2.83
3433 9508 3.490348 AGTGCAGGTATGTTTTGCTTCT 58.510 40.909 0.00 0.00 38.60 2.85
3503 9580 4.201851 GCGTAAGATCATGCTTTCACACAT 60.202 41.667 0.00 0.00 43.02 3.21
3560 9641 7.122055 CACTACATAATTCCTTGGTTTTGCCTA 59.878 37.037 0.00 0.00 38.35 3.93
3699 9786 5.488919 AGTCAGAAAACCCAAGATGAGGATA 59.511 40.000 0.00 0.00 0.00 2.59
3788 9878 5.153950 ACACCTTACCTTCTCTGATTCAC 57.846 43.478 0.00 0.00 0.00 3.18
3794 9886 7.724506 ACCTTACCTTCTCTGATTCACGATATA 59.275 37.037 0.00 0.00 0.00 0.86
3795 9887 8.744652 CCTTACCTTCTCTGATTCACGATATAT 58.255 37.037 0.00 0.00 0.00 0.86
3798 9890 7.825681 ACCTTCTCTGATTCACGATATATGAG 58.174 38.462 0.00 0.00 0.00 2.90
3803 9895 7.972832 TCTCTGATTCACGATATATGAGCATTC 59.027 37.037 0.00 0.00 0.00 2.67
3844 9939 5.632244 TTCTGCAGTACTTATACGTGACA 57.368 39.130 14.67 0.00 36.33 3.58
3869 12769 9.013229 CAGCCTGCTGATATTTTGGTATAATAA 57.987 33.333 13.85 0.00 46.30 1.40
3910 12850 4.588951 TCAGATAACCTGACTGACAGTTGT 59.411 41.667 10.01 5.13 46.38 3.32
3911 12851 5.070446 TCAGATAACCTGACTGACAGTTGTT 59.930 40.000 10.01 14.96 46.38 2.83
3912 12852 5.178252 CAGATAACCTGACTGACAGTTGTTG 59.822 44.000 20.46 10.02 45.78 3.33
3913 12853 1.668419 ACCTGACTGACAGTTGTTGC 58.332 50.000 10.01 0.00 44.40 4.17
3914 12854 1.065491 ACCTGACTGACAGTTGTTGCA 60.065 47.619 10.01 1.63 44.40 4.08
3915 12855 2.016318 CCTGACTGACAGTTGTTGCAA 58.984 47.619 10.01 0.00 44.40 4.08
3916 12856 2.223340 CCTGACTGACAGTTGTTGCAAC 60.223 50.000 22.83 22.83 44.40 4.17
3917 12857 1.396648 TGACTGACAGTTGTTGCAACG 59.603 47.619 23.79 12.35 0.00 4.10
3951 12891 3.519510 TGGTCAGTTAGCCTAGCTGAATT 59.480 43.478 18.33 0.00 45.51 2.17
4168 13302 7.495279 ACATGAATGCTTGTTTATTTGTGTGTT 59.505 29.630 0.00 0.00 0.00 3.32
4169 13303 7.840342 TGAATGCTTGTTTATTTGTGTGTTT 57.160 28.000 0.00 0.00 0.00 2.83
4170 13304 8.932945 TGAATGCTTGTTTATTTGTGTGTTTA 57.067 26.923 0.00 0.00 0.00 2.01
4179 13313 9.119329 TGTTTATTTGTGTGTTTATTATCGTGC 57.881 29.630 0.00 0.00 0.00 5.34
4242 13379 6.479331 CACTTGTGACATATCAGAGATGGAAG 59.521 42.308 9.84 7.97 34.75 3.46
4298 13462 2.497675 TCATACTTCTCTGGCTGACCAC 59.502 50.000 0.00 0.00 42.67 4.16
4305 13469 3.080641 TGGCTGACCACCCAGATG 58.919 61.111 0.00 0.00 42.67 2.90
4368 13532 3.197434 GGCAACTACCAAACGATCAAC 57.803 47.619 0.00 0.00 0.00 3.18
4476 13643 1.001393 ATCGCGGTGGGGAAAACAT 60.001 52.632 6.13 0.00 38.73 2.71
4481 13648 2.713877 GCGGTGGGGAAAACATAAGTA 58.286 47.619 0.00 0.00 0.00 2.24
4484 13651 4.329392 CGGTGGGGAAAACATAAGTAACT 58.671 43.478 0.00 0.00 0.00 2.24
4595 13938 4.635699 ACTCTGAAAGAATAACCGGGTT 57.364 40.909 17.83 17.83 46.34 4.11
4606 13991 2.124570 CCGGGTTGGCCTGATCAG 60.125 66.667 16.24 16.24 43.97 2.90
4729 14397 1.087501 GGTTTAGGCCAAGAAGCGAG 58.912 55.000 5.01 0.00 0.00 5.03
4750 14423 3.449227 CTCAGGCGCTACGGGTCA 61.449 66.667 7.64 0.00 0.00 4.02
4751 14424 2.758327 TCAGGCGCTACGGGTCAT 60.758 61.111 7.64 0.00 0.00 3.06
4752 14425 2.186903 CAGGCGCTACGGGTCATT 59.813 61.111 7.64 0.00 0.00 2.57
4753 14426 1.038681 TCAGGCGCTACGGGTCATTA 61.039 55.000 7.64 0.00 0.00 1.90
4814 14489 7.597386 TCGATCATCTACTTTCATATGGTCTG 58.403 38.462 2.13 0.00 29.13 3.51
4815 14490 7.231519 TCGATCATCTACTTTCATATGGTCTGT 59.768 37.037 2.13 0.47 29.13 3.41
4985 17512 7.651304 CACTAATTGAGCTGAGAATCGAACTAT 59.349 37.037 0.00 0.00 38.61 2.12
4986 17513 8.851145 ACTAATTGAGCTGAGAATCGAACTATA 58.149 33.333 0.00 0.00 38.61 1.31
5037 17779 2.097038 CGTTCAGCGGCAGAAGAGG 61.097 63.158 8.15 0.00 36.85 3.69
5051 17966 6.183360 CGGCAGAAGAGGACTATTACAAAAAG 60.183 42.308 0.00 0.00 0.00 2.27
5109 18037 5.316167 TCTAAATCTTCTTGGCAGCTTTGA 58.684 37.500 0.00 0.00 0.00 2.69
5110 18038 5.948162 TCTAAATCTTCTTGGCAGCTTTGAT 59.052 36.000 0.00 0.00 0.00 2.57
5111 18039 5.479124 AAATCTTCTTGGCAGCTTTGATT 57.521 34.783 0.00 0.00 0.00 2.57
5112 18040 6.594788 AAATCTTCTTGGCAGCTTTGATTA 57.405 33.333 0.00 0.00 0.00 1.75
5452 18421 2.912295 TGGTGAGATGAACCAGAATCCA 59.088 45.455 0.00 0.00 42.82 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.606401 AGGATCTGCGTGTTGGTTGG 60.606 55.000 0.00 0.00 0.00 3.77
29 31 4.160439 TCTCATCTTTAAGGATCTGCGTGT 59.840 41.667 0.00 0.00 0.00 4.49
48 50 0.545071 TCACCCACCATCTGCTCTCA 60.545 55.000 0.00 0.00 0.00 3.27
161 163 2.839486 ATGGTCAGAAACTCGAAGCA 57.161 45.000 0.00 0.00 0.00 3.91
447 449 3.528905 TGATTGGGAGAGGGTGATGAATT 59.471 43.478 0.00 0.00 0.00 2.17
489 491 4.680708 CGCTGGAAGACAACCTATACACAT 60.681 45.833 0.00 0.00 34.07 3.21
614 616 2.353607 CGACGCTACGAGATGGGC 60.354 66.667 0.00 0.00 35.09 5.36
619 621 3.129502 CCACCCGACGCTACGAGA 61.130 66.667 0.00 0.00 35.09 4.04
681 683 0.817229 GATGCAGGAGCTAGGGTTGC 60.817 60.000 0.00 0.00 42.74 4.17
720 722 3.154473 CCTCGGATCAAGCGGGGA 61.154 66.667 2.84 0.00 0.00 4.81
761 763 0.108472 GTTTCTCCGTCGGGTAAGGG 60.108 60.000 12.29 0.00 33.83 3.95
792 794 1.478288 CGGACTAGGGTTCCTATCCGT 60.478 57.143 22.26 9.10 43.62 4.69
833 835 1.944177 TCTTTCCCTGCTAGCTGTCT 58.056 50.000 17.23 0.00 0.00 3.41
834 836 2.801342 CGATCTTTCCCTGCTAGCTGTC 60.801 54.545 17.23 6.21 0.00 3.51
844 846 0.539051 CCTGCTGTCGATCTTTCCCT 59.461 55.000 0.00 0.00 0.00 4.20
850 852 2.418910 CCGTCCCTGCTGTCGATCT 61.419 63.158 0.00 0.00 0.00 2.75
936 940 1.559682 AGGGAGCGGCTAAGAATTGAA 59.440 47.619 0.60 0.00 0.00 2.69
937 941 1.204146 AGGGAGCGGCTAAGAATTGA 58.796 50.000 0.60 0.00 0.00 2.57
938 942 2.548920 CCTAGGGAGCGGCTAAGAATTG 60.549 54.545 0.60 0.00 0.00 2.32
939 943 1.694696 CCTAGGGAGCGGCTAAGAATT 59.305 52.381 0.60 0.00 0.00 2.17
940 944 1.343069 CCTAGGGAGCGGCTAAGAAT 58.657 55.000 0.60 0.00 0.00 2.40
941 945 0.032416 ACCTAGGGAGCGGCTAAGAA 60.032 55.000 14.81 0.00 0.00 2.52
942 946 0.755698 CACCTAGGGAGCGGCTAAGA 60.756 60.000 14.81 0.00 0.00 2.10
943 947 1.043673 ACACCTAGGGAGCGGCTAAG 61.044 60.000 14.81 0.00 0.00 2.18
944 948 0.616679 AACACCTAGGGAGCGGCTAA 60.617 55.000 14.81 0.00 0.00 3.09
945 949 1.001248 AACACCTAGGGAGCGGCTA 59.999 57.895 14.81 0.00 0.00 3.93
949 953 1.153549 GCTGAACACCTAGGGAGCG 60.154 63.158 14.81 0.76 0.00 5.03
985 2826 3.373830 TCTTCATATTTTGGGCCTTGGG 58.626 45.455 4.53 0.00 0.00 4.12
1001 2842 0.324943 CCTTCGGGCCTTCTTCTTCA 59.675 55.000 0.84 0.00 0.00 3.02
1247 4929 2.524640 TGGTACCAGGTGGCACGA 60.525 61.111 11.60 0.00 39.32 4.35
1366 5068 3.354089 AACAAAAATCCACTGCTCGTG 57.646 42.857 0.46 0.46 43.41 4.35
1367 5069 4.142902 CGATAACAAAAATCCACTGCTCGT 60.143 41.667 0.00 0.00 0.00 4.18
1368 5070 4.092821 TCGATAACAAAAATCCACTGCTCG 59.907 41.667 0.00 0.00 0.00 5.03
1369 5071 5.545658 TCGATAACAAAAATCCACTGCTC 57.454 39.130 0.00 0.00 0.00 4.26
1370 5072 5.882557 AGATCGATAACAAAAATCCACTGCT 59.117 36.000 0.00 0.00 0.00 4.24
1425 5204 3.081061 ACGCAATGCTCAACTATCCAAA 58.919 40.909 2.94 0.00 0.00 3.28
1444 5224 9.051679 TGGATGGATGTACATAGAATTTAAACG 57.948 33.333 8.71 0.00 0.00 3.60
1455 5235 3.572642 AGGTCGTGGATGGATGTACATA 58.427 45.455 8.71 0.00 0.00 2.29
1456 5236 2.398588 AGGTCGTGGATGGATGTACAT 58.601 47.619 8.43 8.43 0.00 2.29
1457 5237 1.860641 AGGTCGTGGATGGATGTACA 58.139 50.000 0.00 0.00 0.00 2.90
1458 5238 3.004524 GTCTAGGTCGTGGATGGATGTAC 59.995 52.174 0.00 0.00 0.00 2.90
1519 5299 3.083997 GCCGACCCCTCCTGACAT 61.084 66.667 0.00 0.00 0.00 3.06
1531 5311 4.933064 CGATGCTCCTCCGCCGAC 62.933 72.222 0.00 0.00 0.00 4.79
1689 5487 0.320946 CCACTCGCCGGAAAAAGGTA 60.321 55.000 5.05 0.00 0.00 3.08
1718 5527 6.520790 CGAAACACATACAAATCACACTCATG 59.479 38.462 0.00 0.00 0.00 3.07
1778 5587 4.490003 CTGCAAGATTGGCACCAAGCAA 62.490 50.000 19.03 2.08 43.87 3.91
2035 5845 5.431765 GACCACAAATATCATCACAGGACT 58.568 41.667 0.00 0.00 0.00 3.85
2105 5916 6.607004 ACTTCTAGCTAGGCTTTTAGTCAA 57.393 37.500 20.58 2.79 40.44 3.18
2111 5922 3.587506 TGGGAACTTCTAGCTAGGCTTTT 59.412 43.478 20.58 8.88 40.44 2.27
2112 5923 3.055021 GTGGGAACTTCTAGCTAGGCTTT 60.055 47.826 20.58 10.57 40.44 3.51
2117 7993 4.810191 ACAAGTGGGAACTTCTAGCTAG 57.190 45.455 15.01 15.01 0.00 3.42
2154 8031 7.856145 ACTGAATAATCTTAACTGCCAAGAG 57.144 36.000 0.00 0.00 35.57 2.85
2175 8052 9.009327 CATTATACCACGAATTAAAGCAAACTG 57.991 33.333 0.00 0.00 0.00 3.16
2186 8063 8.621532 ATTACAGCATCATTATACCACGAATT 57.378 30.769 0.00 0.00 0.00 2.17
2238 8118 8.197439 CCCTGCCTATAAAAGAAAACATTAAGG 58.803 37.037 0.00 0.00 0.00 2.69
2347 8228 2.121291 TGCAACCAGTGTCAACAGAA 57.879 45.000 0.00 0.00 0.00 3.02
2387 8268 8.853077 ATTCCATCAAATATTCGATTCAGCTA 57.147 30.769 0.00 0.00 0.00 3.32
2434 8316 8.299570 CACAAGGAACAAAAGTTATGCTCTATT 58.700 33.333 0.00 0.00 0.00 1.73
2560 8447 6.949352 ACACTTTGCTGCTAATTGCTATAT 57.051 33.333 12.48 0.00 43.37 0.86
2563 8450 4.278170 ACAACACTTTGCTGCTAATTGCTA 59.722 37.500 12.48 0.00 38.24 3.49
2564 8451 3.068590 ACAACACTTTGCTGCTAATTGCT 59.931 39.130 12.48 0.25 38.24 3.91
2565 8452 3.182972 CACAACACTTTGCTGCTAATTGC 59.817 43.478 12.48 0.00 38.04 3.56
2566 8453 4.609947 TCACAACACTTTGCTGCTAATTG 58.390 39.130 11.34 11.34 36.00 2.32
2567 8454 4.916983 TCACAACACTTTGCTGCTAATT 57.083 36.364 0.00 0.00 36.00 1.40
2568 8455 5.458041 AATCACAACACTTTGCTGCTAAT 57.542 34.783 0.00 0.00 36.00 1.73
2569 8456 4.916983 AATCACAACACTTTGCTGCTAA 57.083 36.364 0.00 0.00 36.00 3.09
2626 8514 7.242359 AGCTTCATGTACCATATACTAGGAGT 58.758 38.462 0.00 0.00 0.00 3.85
2628 8516 7.238710 TGAGCTTCATGTACCATATACTAGGA 58.761 38.462 0.00 0.00 0.00 2.94
2629 8517 7.468141 TGAGCTTCATGTACCATATACTAGG 57.532 40.000 0.00 0.00 0.00 3.02
2630 8518 8.743714 TGATGAGCTTCATGTACCATATACTAG 58.256 37.037 3.76 0.00 37.20 2.57
2631 8519 8.523658 GTGATGAGCTTCATGTACCATATACTA 58.476 37.037 3.76 0.00 37.20 1.82
2633 8521 6.591834 GGTGATGAGCTTCATGTACCATATAC 59.408 42.308 16.07 5.75 39.05 1.47
2748 8639 4.938226 GTGCAAACCAAGTTAGCTATCTCT 59.062 41.667 4.80 0.00 0.00 3.10
3149 9149 8.647796 ACTACCAAGTTAGTTGCTGCATATATA 58.352 33.333 1.84 0.00 34.45 0.86
3287 9362 9.265901 CAGAGACAAAGAAGACAAAGAAGATAA 57.734 33.333 0.00 0.00 0.00 1.75
3288 9363 8.642432 TCAGAGACAAAGAAGACAAAGAAGATA 58.358 33.333 0.00 0.00 0.00 1.98
3289 9364 7.504403 TCAGAGACAAAGAAGACAAAGAAGAT 58.496 34.615 0.00 0.00 0.00 2.40
3290 9365 6.878317 TCAGAGACAAAGAAGACAAAGAAGA 58.122 36.000 0.00 0.00 0.00 2.87
3291 9366 7.727331 ATCAGAGACAAAGAAGACAAAGAAG 57.273 36.000 0.00 0.00 0.00 2.85
3292 9367 9.784531 AATATCAGAGACAAAGAAGACAAAGAA 57.215 29.630 0.00 0.00 0.00 2.52
3300 9375 9.713740 GCAAACATAATATCAGAGACAAAGAAG 57.286 33.333 0.00 0.00 0.00 2.85
3301 9376 9.230122 TGCAAACATAATATCAGAGACAAAGAA 57.770 29.630 0.00 0.00 0.00 2.52
3302 9377 8.791327 TGCAAACATAATATCAGAGACAAAGA 57.209 30.769 0.00 0.00 0.00 2.52
3303 9378 8.886719 TCTGCAAACATAATATCAGAGACAAAG 58.113 33.333 0.00 0.00 0.00 2.77
3304 9379 8.791327 TCTGCAAACATAATATCAGAGACAAA 57.209 30.769 0.00 0.00 0.00 2.83
3305 9380 8.833493 CATCTGCAAACATAATATCAGAGACAA 58.167 33.333 0.00 0.00 34.57 3.18
3306 9381 7.989170 ACATCTGCAAACATAATATCAGAGACA 59.011 33.333 0.00 0.00 34.57 3.41
3307 9382 8.375608 ACATCTGCAAACATAATATCAGAGAC 57.624 34.615 0.00 0.00 34.57 3.36
3308 9383 8.969260 AACATCTGCAAACATAATATCAGAGA 57.031 30.769 0.00 0.00 34.57 3.10
3433 9508 5.262009 ACAAGGATACAGAGTGCTAGTGTA 58.738 41.667 0.00 0.00 41.41 2.90
3471 9548 7.912056 AAGCATGATCTTACGCAATACATAT 57.088 32.000 0.00 0.00 0.00 1.78
3503 9580 1.127567 AGGTCCAGCCACTGCACTTA 61.128 55.000 0.00 0.00 41.13 2.24
3560 9641 5.319453 TCTCTGAAAGCCTGTGAAATGAAT 58.681 37.500 0.00 0.00 0.00 2.57
3699 9786 0.969149 TCTGGAGTGCACGACTTCAT 59.031 50.000 12.01 0.00 39.67 2.57
3788 9878 5.287274 GTGAACTCCGAATGCTCATATATCG 59.713 44.000 0.00 0.00 0.00 2.92
3794 9886 1.645034 CGTGAACTCCGAATGCTCAT 58.355 50.000 0.00 0.00 0.00 2.90
3795 9887 0.389817 CCGTGAACTCCGAATGCTCA 60.390 55.000 0.00 0.00 0.00 4.26
3798 9890 0.165944 CAACCGTGAACTCCGAATGC 59.834 55.000 0.00 0.00 0.00 3.56
3803 9895 0.591170 AAATGCAACCGTGAACTCCG 59.409 50.000 0.00 0.00 0.00 4.63
3829 9924 3.114065 GCAGGCTGTCACGTATAAGTAC 58.886 50.000 17.16 0.00 0.00 2.73
3839 9934 3.181493 CCAAAATATCAGCAGGCTGTCAC 60.181 47.826 19.75 0.00 43.96 3.67
3844 9939 9.014297 GTTATTATACCAAAATATCAGCAGGCT 57.986 33.333 0.00 0.00 0.00 4.58
3910 12850 2.989840 CCAACTGTTGTTTTCGTTGCAA 59.010 40.909 18.38 0.00 36.36 4.08
3911 12851 2.029828 ACCAACTGTTGTTTTCGTTGCA 60.030 40.909 18.38 0.00 36.36 4.08
3912 12852 2.596862 GACCAACTGTTGTTTTCGTTGC 59.403 45.455 18.38 0.00 36.36 4.17
3913 12853 3.827625 TGACCAACTGTTGTTTTCGTTG 58.172 40.909 18.38 4.05 37.18 4.10
3914 12854 3.504520 ACTGACCAACTGTTGTTTTCGTT 59.495 39.130 18.38 1.88 33.52 3.85
3915 12855 3.078837 ACTGACCAACTGTTGTTTTCGT 58.921 40.909 18.38 9.10 33.52 3.85
3916 12856 3.757745 ACTGACCAACTGTTGTTTTCG 57.242 42.857 18.38 6.06 33.52 3.46
3917 12857 5.034797 GCTAACTGACCAACTGTTGTTTTC 58.965 41.667 18.38 12.00 40.07 2.29
3951 12891 2.509548 AGTAAGCACAATCCCAGCCATA 59.490 45.455 0.00 0.00 0.00 2.74
4140 13160 7.794810 CACACAAATAAACAAGCATTCATGTTG 59.205 33.333 0.00 0.00 39.57 3.33
4162 13296 6.598753 AGTATGGCACGATAATAAACACAC 57.401 37.500 0.00 0.00 0.00 3.82
4169 13303 9.729023 CATTTTTCAAAGTATGGCACGATAATA 57.271 29.630 0.00 0.00 0.00 0.98
4170 13304 8.250332 ACATTTTTCAAAGTATGGCACGATAAT 58.750 29.630 0.00 0.00 0.00 1.28
4194 13328 9.502091 AGTGCAACATTAGAACTTATAAGAACA 57.498 29.630 19.38 0.00 41.43 3.18
4214 13350 5.151297 TCTCTGATATGTCACAAGTGCAA 57.849 39.130 0.00 0.00 0.00 4.08
4242 13379 1.541588 GGTGTTTGCTCCATCAAGGTC 59.458 52.381 0.00 0.00 39.02 3.85
4298 13462 0.032813 AATGGGTGGCTTCATCTGGG 60.033 55.000 0.00 0.00 0.00 4.45
4361 13525 0.320421 AACCCGGAGTGTGTTGATCG 60.320 55.000 0.73 0.00 0.00 3.69
4368 13532 0.969894 AGAAGAGAACCCGGAGTGTG 59.030 55.000 0.73 0.00 0.00 3.82
4476 13643 1.965643 AGGCGGTGTCACAGTTACTTA 59.034 47.619 5.12 0.00 0.00 2.24
4481 13648 0.107410 TTTCAGGCGGTGTCACAGTT 60.107 50.000 5.12 0.00 0.00 3.16
4484 13651 0.179032 ATGTTTCAGGCGGTGTCACA 60.179 50.000 5.12 0.00 0.00 3.58
4595 13938 1.002430 GAGAACACACTGATCAGGCCA 59.998 52.381 26.08 0.00 0.00 5.36
4606 13991 3.291585 CAACAAAGCATCGAGAACACAC 58.708 45.455 0.00 0.00 0.00 3.82
4670 14058 0.248458 CACGTGGTGCTTGGTGAAAC 60.248 55.000 7.95 0.00 32.23 2.78
4750 14423 9.316730 GTGCATGATTGTGGTCAAATAATTAAT 57.683 29.630 0.00 0.00 37.11 1.40
4751 14424 8.530311 AGTGCATGATTGTGGTCAAATAATTAA 58.470 29.630 0.00 0.00 37.11 1.40
4752 14425 7.975058 CAGTGCATGATTGTGGTCAAATAATTA 59.025 33.333 0.00 0.00 37.11 1.40
4753 14426 6.814644 CAGTGCATGATTGTGGTCAAATAATT 59.185 34.615 0.00 0.00 37.11 1.40
4814 14489 3.270877 CTTGTGTGGCCACCTCTTATAC 58.729 50.000 32.62 21.55 41.09 1.47
4815 14490 2.355716 GCTTGTGTGGCCACCTCTTATA 60.356 50.000 32.62 9.77 41.09 0.98
4835 14533 5.061808 GCATGATTGAATGAGAAAGTTGTGC 59.938 40.000 0.00 0.00 0.00 4.57
5027 17769 6.094186 CCTTTTTGTAATAGTCCTCTTCTGCC 59.906 42.308 0.00 0.00 0.00 4.85
5037 17779 6.793680 CGTCGTTTTCCCTTTTTGTAATAGTC 59.206 38.462 0.00 0.00 0.00 2.59
5051 17966 0.442699 GCTGTGATCGTCGTTTTCCC 59.557 55.000 0.00 0.00 0.00 3.97
5109 18037 1.609072 CAGCAGCAGCAGCATCATAAT 59.391 47.619 12.92 0.00 45.49 1.28
5110 18038 1.021968 CAGCAGCAGCAGCATCATAA 58.978 50.000 12.92 0.00 45.49 1.90
5111 18039 2.702847 CAGCAGCAGCAGCATCATA 58.297 52.632 12.92 0.00 45.49 2.15
5112 18040 3.514417 CAGCAGCAGCAGCATCAT 58.486 55.556 12.92 0.00 45.49 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.