AutoCloner

Multiple sequence alignment - TraesCS5A01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G283200	chr5A	100.000	3279	0	0	1	3279	491567845	491571123	0.000000e+00	6056
1	TraesCS5A01G283200	chr5A	94.946	554	10	4	1523	2076	491584511	491585046	0.000000e+00	852
2	TraesCS5A01G283200	chr5A	89.696	592	35	11	951	1526	491583894	491584475	0.000000e+00	732
3	TraesCS5A01G283200	chr5A	87.063	572	55	7	1539	2103	489764149	489764708	2.150000e-176	628
4	TraesCS5A01G283200	chr5A	89.260	419	36	4	2582	2997	491585766	491586178	1.740000e-142	516
5	TraesCS5A01G283200	chr5A	88.214	280	24	3	3000	3279	491586282	491586552	3.160000e-85	326
6	TraesCS5A01G283200	chr5A	92.135	89	3	1	2234	2318	489682797	489682885	4.440000e-24	122
7	TraesCS5A01G283200	chr5A	84.559	136	6	10	2251	2372	489678550	489678684	1.600000e-23	121
8	TraesCS5A01G283200	chr4A	89.040	1615	81	21	1	1607	45870094	45871620	0.000000e+00	1914
9	TraesCS5A01G283200	chr4A	92.330	1043	66	8	2136	3173	45872056	45873089	0.000000e+00	1471
10	TraesCS5A01G283200	chr5D	89.658	1054	63	15	2150	3173	388381993	388383030	0.000000e+00	1301
11	TraesCS5A01G283200	chr5D	85.849	1166	86	29	991	2104	386958350	386959488	0.000000e+00	1166
12	TraesCS5A01G283200	chr5D	94.655	580	18	4	1535	2114	388381270	388381836	0.000000e+00	887
13	TraesCS5A01G283200	chr5D	86.264	779	59	24	763	1525	388380481	388381227	0.000000e+00	802
14	TraesCS5A01G283200	chr5D	90.646	588	41	8	951	1528	388411703	388412286	0.000000e+00	769
15	TraesCS5A01G283200	chr5D	90.756	595	27	8	1520	2107	388412316	388412889	0.000000e+00	769
16	TraesCS5A01G283200	chr5D	86.795	727	49	18	2583	3277	353955523	353956234	0.000000e+00	767
17	TraesCS5A01G283200	chr5D	89.005	573	30	9	1535	2107	353954357	353954896	0.000000e+00	678
18	TraesCS5A01G283200	chr5D	87.752	596	40	17	951	1525	353953731	353954314	0.000000e+00	665
19	TraesCS5A01G283200	chr5D	91.358	486	30	5	1638	2123	388592516	388592989	0.000000e+00	654
20	TraesCS5A01G283200	chr5D	85.689	566	62	7	1535	2098	370778061	370778609	2.190000e-161	579
21	TraesCS5A01G283200	chr5D	88.793	464	44	3	2568	3031	353968293	353968748	2.210000e-156	562
22	TraesCS5A01G283200	chr5D	89.976	419	33	4	2582	2997	388596304	388596716	1.730000e-147	532
23	TraesCS5A01G283200	chr5D	85.664	286	33	8	3000	3279	388596831	388597114	8.900000e-76	294
24	TraesCS5A01G283200	chr5D	82.993	294	22	11	2281	2560	353955012	353955291	1.180000e-59	241
25	TraesCS5A01G283200	chr5D	85.526	152	10	8	2233	2372	386959584	386959735	7.330000e-32	148
26	TraesCS5A01G283200	chr5B	84.153	1199	85	44	978	2103	465053751	465054917	0.000000e+00	1064
27	TraesCS5A01G283200	chr5B	87.404	778	48	14	763	1525	467019101	467019843	0.000000e+00	848
28	TraesCS5A01G283200	chr5B	89.175	582	26	10	1539	2114	467019893	467020443	0.000000e+00	691
29	TraesCS5A01G283200	chr5B	89.786	421	38	4	2571	2989	467021216	467021633	4.820000e-148	534
30	TraesCS5A01G283200	chr5B	81.982	666	84	17	92	735	467018357	467019008	1.730000e-147	532
31	TraesCS5A01G283200	chr5B	86.545	275	27	3	3000	3273	467021755	467022020	8.900000e-76	294
32	TraesCS5A01G283200	chr5B	84.513	226	19	12	2113	2337	467020474	467020684	3.320000e-50	209
33	TraesCS5A01G283200	chr5B	84.559	136	6	10	2251	2372	465054979	465055113	1.600000e-23	121
34	TraesCS5A01G283200	chr6D	90.393	687	33	15	847	1525	106951526	106952187	0.000000e+00	872
35	TraesCS5A01G283200	chr6D	87.705	732	50	14	1520	2234	106952219	106952927	0.000000e+00	817
36	TraesCS5A01G283200	chr6D	93.258	534	35	1	92	625	106946230	106946762	0.000000e+00	785
37	TraesCS5A01G283200	chr6D	88.368	576	45	9	1539	2103	60556404	60555840	0.000000e+00	673
38	TraesCS5A01G283200	chr6D	88.966	145	3	3	638	773	106951386	106951526	2.020000e-37	167
39	TraesCS5A01G283200	chr6D	94.565	92	1	1	2234	2321	60555737	60555646	4.410000e-29	139
40	TraesCS5A01G283200	chr6A	90.205	684	34	13	847	1519	130412607	130413268	0.000000e+00	861
41	TraesCS5A01G283200	chr6A	92.154	599	34	4	183	773	130412014	130412607	0.000000e+00	833
42	TraesCS5A01G283200	chr6A	87.517	737	47	15	1520	2234	130413307	130414020	0.000000e+00	809
43	TraesCS5A01G283200	chr6A	95.238	84	4	0	91	174	130410176	130410259	2.050000e-27	134
44	TraesCS5A01G283200	chr7B	88.562	577	39	8	1533	2103	456502171	456501616	0.000000e+00	675
45	TraesCS5A01G283200	chr7D	86.957	575	47	10	1535	2103	437592670	437593222	3.590000e-174	621
46	TraesCS5A01G283200	chr7D	92.381	105	7	1	2233	2336	437593333	437593437	7.330000e-32	148
47	TraesCS5A01G283200	chr4B	89.006	473	39	6	2568	3030	31872248	31871779	1.020000e-159	573

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G283200	chr5A	491567845	491571123	3278	False	6056.000000	6056	100.000000	1	3279	1	chr5A.!!$F4	3278
1	TraesCS5A01G283200	chr5A	489764149	489764708	559	False	628.000000	628	87.063000	1539	2103	1	chr5A.!!$F3	564
2	TraesCS5A01G283200	chr5A	491583894	491586552	2658	False	606.500000	852	90.529000	951	3279	4	chr5A.!!$F5	2328
3	TraesCS5A01G283200	chr4A	45870094	45873089	2995	False	1692.500000	1914	90.685000	1	3173	2	chr4A.!!$F1	3172
4	TraesCS5A01G283200	chr5D	388380481	388383030	2549	False	996.666667	1301	90.192333	763	3173	3	chr5D.!!$F5	2410
5	TraesCS5A01G283200	chr5D	388411703	388412889	1186	False	769.000000	769	90.701000	951	2107	2	chr5D.!!$F6	1156
6	TraesCS5A01G283200	chr5D	386958350	386959735	1385	False	657.000000	1166	85.687500	991	2372	2	chr5D.!!$F4	1381
7	TraesCS5A01G283200	chr5D	353953731	353956234	2503	False	587.750000	767	86.636250	951	3277	4	chr5D.!!$F3	2326
8	TraesCS5A01G283200	chr5D	370778061	370778609	548	False	579.000000	579	85.689000	1535	2098	1	chr5D.!!$F2	563
9	TraesCS5A01G283200	chr5D	388592516	388597114	4598	False	493.333333	654	88.999333	1638	3279	3	chr5D.!!$F7	1641
10	TraesCS5A01G283200	chr5B	465053751	465055113	1362	False	592.500000	1064	84.356000	978	2372	2	chr5B.!!$F1	1394
11	TraesCS5A01G283200	chr5B	467018357	467022020	3663	False	518.000000	848	86.567500	92	3273	6	chr5B.!!$F2	3181
12	TraesCS5A01G283200	chr6D	106946230	106946762	532	False	785.000000	785	93.258000	92	625	1	chr6D.!!$F1	533
13	TraesCS5A01G283200	chr6D	106951386	106952927	1541	False	618.666667	872	89.021333	638	2234	3	chr6D.!!$F2	1596
14	TraesCS5A01G283200	chr6D	60555646	60556404	758	True	406.000000	673	91.466500	1539	2321	2	chr6D.!!$R1	782
15	TraesCS5A01G283200	chr6A	130410176	130414020	3844	False	659.250000	861	91.278500	91	2234	4	chr6A.!!$F1	2143
16	TraesCS5A01G283200	chr7B	456501616	456502171	555	True	675.000000	675	88.562000	1533	2103	1	chr7B.!!$R1	570
17	TraesCS5A01G283200	chr7D	437592670	437593437	767	False	384.500000	621	89.669000	1535	2336	2	chr7D.!!$F1	801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
842	2682	0.239347	AAGCTTGAGATGCACGCAAC	59.761	50.0	0.0	0.0	43.65	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2683	8467	1.001393	ATCGCGGTGGGGAAAACAT	60.001	52.632	6.13	0.0	38.73	2.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	8.186163	TGCATAGATTAAGCAAACAAGATGAAG	58.814	33.333	0.00	0.00	34.97	3.02
86	87	1.405105	TCGCCCTGCTTTATTGATTGC	59.595	47.619	0.00	0.00	0.00	3.56
104	105	3.627395	TGCGGTATTGTCTGGAATCTT	57.373	42.857	0.00	0.00	0.00	2.40
181	1928	3.125376	GCCCATCCTCATCGGCCTT	62.125	63.158	0.00	0.00	30.14	4.35
198	1945	1.895798	CCTTATCTAGCCTCATCCGCA	59.104	52.381	0.00	0.00	0.00	5.69
239	1986	4.792087	GTGGGTGACACCGTTGAT	57.208	55.556	18.40	0.00	44.49	2.57
317	2071	2.092538	CCTGGAGCTTCATGTCAGGATT	60.093	50.000	0.00	0.00	45.66	3.01
385	2141	0.463654	TTGCGACACCAGAGCAAAGT	60.464	50.000	0.00	0.00	46.23	2.66
429	2186	1.481871	CCTTCAGGCGAGTACCCTTA	58.518	55.000	0.00	0.00	0.00	2.69
570	2339	1.175983	TTCGCTTCCAAACGGGCAAT	61.176	50.000	0.00	0.00	36.21	3.56
708	2477	1.251251	GACTGGACTGCAAGCCAAAT	58.749	50.000	8.39	0.69	39.13	2.32
709	2478	1.615392	GACTGGACTGCAAGCCAAATT	59.385	47.619	8.39	0.00	39.13	1.82
711	2480	3.230134	ACTGGACTGCAAGCCAAATTAA	58.770	40.909	8.39	0.00	39.13	1.40
769	2564	7.790027	ACTCAGTGACATAATAAGCTTGAGAT	58.210	34.615	9.86	0.00	0.00	2.75
841	2681	1.807139	TAAGCTTGAGATGCACGCAA	58.193	45.000	9.86	0.00	43.65	4.85
842	2682	0.239347	AAGCTTGAGATGCACGCAAC	59.761	50.000	0.00	0.00	43.65	4.17
843	2683	1.510623	GCTTGAGATGCACGCAACG	60.511	57.895	0.00	0.00	41.10	4.10
844	2684	1.510623	CTTGAGATGCACGCAACGC	60.511	57.895	0.00	0.00	34.81	4.84
845	2685	2.173951	CTTGAGATGCACGCAACGCA	62.174	55.000	1.76	1.76	44.94	5.24
918	2772	2.721797	CGATTTCTTCACCGAGCAAACG	60.722	50.000	0.00	0.00	0.00	3.60
982	2838	2.026905	GCCCTGAGTCGATCTTCTCCT	61.027	57.143	10.17	0.00	0.00	3.69
1031	2896	1.760086	CTCCTCTCCTCCACCGCAT	60.760	63.158	0.00	0.00	0.00	4.73
1034	2899	1.760086	CTCTCCTCCACCGCATCCT	60.760	63.158	0.00	0.00	0.00	3.24
1035	2900	1.743321	CTCTCCTCCACCGCATCCTC	61.743	65.000	0.00	0.00	0.00	3.71
1109	3012	0.463295	CTTCAGCATCATGTCCGGCT	60.463	55.000	0.00	0.00	36.99	5.52
1110	3013	0.462581	TTCAGCATCATGTCCGGCTC	60.463	55.000	0.00	0.00	33.60	4.70
1112	3015	2.969238	GCATCATGTCCGGCTCCG	60.969	66.667	0.00	0.48	39.44	4.63
1148	3057	2.496341	CGCTGGAGATCCTTCGCA	59.504	61.111	0.00	0.00	36.82	5.10
1177	3086	3.362797	TCTGAGCTCGTCGCGGTT	61.363	61.111	6.13	0.00	45.59	4.44
1221	3130	3.114616	CGTGCTTCCTGCCTCGTG	61.115	66.667	0.00	0.00	42.00	4.35
2108	4158	0.442699	GCTGTGATCGTCGTTTTCCC	59.557	55.000	0.00	0.00	0.00	3.97
2122	4342	6.793680	CGTCGTTTTCCCTTTTTGTAATAGTC	59.206	38.462	0.00	0.00	0.00	2.59
2344	7624	2.355716	GCTTGTGTGGCCACCTCTTATA	60.356	50.000	32.62	9.77	41.09	0.98
2345	7625	3.270877	CTTGTGTGGCCACCTCTTATAC	58.729	50.000	32.62	21.55	41.09	1.47
2369	7651	7.374272	ACAGACCATATGAAAGTAGATGATCG	58.626	38.462	3.65	0.00	0.00	3.69
2370	7652	7.231519	ACAGACCATATGAAAGTAGATGATCGA	59.768	37.037	3.65	0.00	0.00	3.59
2371	7653	8.249638	CAGACCATATGAAAGTAGATGATCGAT	58.750	37.037	3.65	0.00	0.00	3.59
2406	7688	6.814644	CAGTGCATGATTGTGGTCAAATAATT	59.185	34.615	0.00	0.00	37.11	1.40
2407	7689	7.975058	CAGTGCATGATTGTGGTCAAATAATTA	59.025	33.333	0.00	0.00	37.11	1.40
2408	7690	8.530311	AGTGCATGATTGTGGTCAAATAATTAA	58.470	29.630	0.00	0.00	37.11	1.40
2409	7691	9.316730	GTGCATGATTGTGGTCAAATAATTAAT	57.683	29.630	0.00	0.00	37.11	1.40
2489	8056	0.248458	CACGTGGTGCTTGGTGAAAC	60.248	55.000	7.95	0.00	32.23	2.78
2553	8121	3.291585	CAACAAAGCATCGAGAACACAC	58.708	45.455	0.00	0.00	0.00	3.82
2564	8132	1.002430	GAGAACACACTGATCAGGCCA	59.998	52.381	26.08	0.00	0.00	5.36
2675	8459	0.179032	ATGTTTCAGGCGGTGTCACA	60.179	50.000	5.12	0.00	0.00	3.58
2678	8462	0.107410	TTTCAGGCGGTGTCACAGTT	60.107	50.000	5.12	0.00	0.00	3.16
2683	8467	1.965643	AGGCGGTGTCACAGTTACTTA	59.034	47.619	5.12	0.00	0.00	2.24
2791	8578	0.969894	AGAAGAGAACCCGGAGTGTG	59.030	55.000	0.73	0.00	0.00	3.82
2798	8585	0.320421	AACCCGGAGTGTGTTGATCG	60.320	55.000	0.73	0.00	0.00	3.69
2861	8648	0.032813	AATGGGTGGCTTCATCTGGG	60.033	55.000	0.00	0.00	0.00	4.45
2917	8731	1.541588	GGTGTTTGCTCCATCAAGGTC	59.458	52.381	0.00	0.00	39.02	3.85
2945	8759	5.151297	TCTCTGATATGTCACAAGTGCAA	57.849	39.130	0.00	0.00	0.00	4.08
2965	8781	9.502091	AGTGCAACATTAGAACTTATAAGAACA	57.498	29.630	19.38	0.00	41.43	3.18
2989	8805	8.250332	ACATTTTTCAAAGTATGGCACGATAAT	58.750	29.630	0.00	0.00	0.00	1.28
2990	8806	9.729023	CATTTTTCAAAGTATGGCACGATAATA	57.271	29.630	0.00	0.00	0.00	0.98
2997	8813	6.598753	AGTATGGCACGATAATAAACACAC	57.401	37.500	0.00	0.00	0.00	3.82
3019	8949	7.794810	CACACAAATAAACAAGCATTCATGTTG	59.205	33.333	0.00	0.00	39.57	3.33
3208	9146	2.509548	AGTAAGCACAATCCCAGCCATA	59.490	45.455	0.00	0.00	0.00	2.74
3243	9181	3.757745	ACTGACCAACTGTTGTTTTCG	57.242	42.857	18.38	6.06	33.52	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	4.491676	ACATGCATCTTCATCTTGTTTGC	58.508	39.130	0.00	0.00	0.00	3.68
72	73	5.356751	AGACAATACCGCAATCAATAAAGCA	59.643	36.000	0.00	0.00	0.00	3.91
181	1928	0.891373	GCTGCGGATGAGGCTAGATA	59.109	55.000	0.00	0.00	0.00	1.98
239	1986	1.270839	CCAAGAAGAGGCGAGGTGAAA	60.271	52.381	0.00	0.00	0.00	2.69
298	2052	2.573009	TGAATCCTGACATGAAGCTCCA	59.427	45.455	0.00	0.00	0.00	3.86
348	2104	2.158449	GCAATGGACTTCGTGACTCTTG	59.842	50.000	0.00	0.00	0.00	3.02
352	2108	0.317160	TCGCAATGGACTTCGTGACT	59.683	50.000	0.00	0.00	0.00	3.41
538	2300	4.830708	GCGAATTGAAAACCGCGA	57.169	50.000	8.23	0.00	40.38	5.87
570	2339	6.072397	ACACGAATTCCAAATTTTATGGTCGA	60.072	34.615	14.01	0.00	36.57	4.20
669	2438	6.263344	CAGTCATTCATTACAATGCCTTCTG	58.737	40.000	0.00	0.33	36.36	3.02
708	2477	8.745590	GGAGTTTAAATCAAATACAGCCCTTAA	58.254	33.333	0.00	0.00	0.00	1.85
709	2478	7.891183	TGGAGTTTAAATCAAATACAGCCCTTA	59.109	33.333	0.00	0.00	0.00	2.69
711	2480	6.252995	TGGAGTTTAAATCAAATACAGCCCT	58.747	36.000	0.00	0.00	0.00	5.19
769	2564	2.559698	TTCTCCCATTTCGTCTTGCA	57.440	45.000	0.00	0.00	0.00	4.08
841	2681	4.897856	GGTTGCGTTGCGTTGCGT	62.898	61.111	0.00	0.00	0.00	5.24
842	2682	4.896028	TGGTTGCGTTGCGTTGCG	62.896	61.111	0.00	0.00	0.00	4.85
843	2683	1.486644	ATTTGGTTGCGTTGCGTTGC	61.487	50.000	0.00	0.00	0.00	4.17
844	2684	0.502275	GATTTGGTTGCGTTGCGTTG	59.498	50.000	0.00	0.00	0.00	4.10
845	2685	0.596341	GGATTTGGTTGCGTTGCGTT	60.596	50.000	0.00	0.00	0.00	4.84
982	2838	0.960364	GGAAAGATTGGAGGTGCGCA	60.960	55.000	5.66	5.66	0.00	6.09
1031	2896	0.955178	GGAAGATGCGATCGAGAGGA	59.045	55.000	21.57	0.00	0.00	3.71
1034	2899	1.654774	CCGGAAGATGCGATCGAGA	59.345	57.895	21.57	4.24	30.86	4.04
1035	2900	2.018866	GCCGGAAGATGCGATCGAG	61.019	63.158	21.57	0.00	30.86	4.04
1148	3057	1.004440	GCTCAGACTGGAACCGCTT	60.004	57.895	1.81	0.00	0.00	4.68
1266	3175	0.537188	CGCCTTCCTCTTCTTGGCTA	59.463	55.000	0.00	0.00	41.25	3.93
1624	3578	2.092323	CAGATGTCCACGTACTCCTCA	58.908	52.381	0.00	0.00	0.00	3.86
1625	3579	1.202313	GCAGATGTCCACGTACTCCTC	60.202	57.143	0.00	0.00	0.00	3.71
1626	3580	0.818296	GCAGATGTCCACGTACTCCT	59.182	55.000	0.00	0.00	0.00	3.69
1627	3581	0.525668	CGCAGATGTCCACGTACTCC	60.526	60.000	0.00	0.00	0.00	3.85
1707	3708	2.912295	TGGTGAGATGAACCAGAATCCA	59.088	45.455	0.00	0.00	42.82	3.41
2044	4094	5.255687	TCTTCTTGGCAGCTTTGATTATGA	58.744	37.500	0.00	0.00	0.00	2.15
2046	4096	6.786967	AATCTTCTTGGCAGCTTTGATTAT	57.213	33.333	0.00	0.00	0.00	1.28
2108	4158	6.183360	CGGCAGAAGAGGACTATTACAAAAAG	60.183	42.308	0.00	0.00	0.00	2.27
2122	4342	2.097038	CGTTCAGCGGCAGAAGAGG	61.097	63.158	8.15	0.00	36.85	3.69
2173	4600	8.851145	ACTAATTGAGCTGAGAATCGAACTATA	58.149	33.333	0.00	0.00	38.61	1.31
2174	4601	7.651304	CACTAATTGAGCTGAGAATCGAACTAT	59.349	37.037	0.00	0.00	38.61	2.12
2344	7624	7.231519	TCGATCATCTACTTTCATATGGTCTGT	59.768	37.037	2.13	0.47	29.13	3.41
2345	7625	7.597386	TCGATCATCTACTTTCATATGGTCTG	58.403	38.462	2.13	0.00	29.13	3.51
2369	7651	5.791367	ATCATGCACTGCGTATAATCATC	57.209	39.130	0.00	0.00	0.00	2.92
2370	7652	5.471116	ACAATCATGCACTGCGTATAATCAT	59.529	36.000	0.00	0.00	0.00	2.45
2371	7653	4.815846	ACAATCATGCACTGCGTATAATCA	59.184	37.500	0.00	0.00	0.00	2.57
2406	7688	1.038681	TCAGGCGCTACGGGTCATTA	61.039	55.000	7.64	0.00	0.00	1.90
2407	7689	2.186903	CAGGCGCTACGGGTCATT	59.813	61.111	7.64	0.00	0.00	2.57
2408	7690	2.758327	TCAGGCGCTACGGGTCAT	60.758	61.111	7.64	0.00	0.00	3.06
2409	7691	3.449227	CTCAGGCGCTACGGGTCA	61.449	66.667	7.64	0.00	0.00	4.02
2430	7717	1.087501	GGTTTAGGCCAAGAAGCGAG	58.912	55.000	5.01	0.00	0.00	5.03
2553	8121	2.124570	CCGGGTTGGCCTGATCAG	60.125	66.667	16.24	16.24	43.97	2.90
2564	8132	4.635699	ACTCTGAAAGAATAACCGGGTT	57.364	40.909	17.83	17.83	46.34	4.11
2675	8459	4.329392	CGGTGGGGAAAACATAAGTAACT	58.671	43.478	0.00	0.00	0.00	2.24
2678	8462	2.713877	GCGGTGGGGAAAACATAAGTA	58.286	47.619	0.00	0.00	0.00	2.24
2683	8467	1.001393	ATCGCGGTGGGGAAAACAT	60.001	52.632	6.13	0.00	38.73	2.71
2791	8578	3.197434	GGCAACTACCAAACGATCAAC	57.803	47.619	0.00	0.00	0.00	3.18
2854	8641	3.080641	TGGCTGACCACCCAGATG	58.919	61.111	0.00	0.00	42.67	2.90
2861	8648	2.497675	TCATACTTCTCTGGCTGACCAC	59.502	50.000	0.00	0.00	42.67	4.16
2878	8665	1.685803	CCCCAGCCAAGCAACATCATA	60.686	52.381	0.00	0.00	0.00	2.15
2917	8731	6.479331	CACTTGTGACATATCAGAGATGGAAG	59.521	42.308	9.84	7.97	34.75	3.46
2980	8796	9.119329	TGTTTATTTGTGTGTTTATTATCGTGC	57.881	29.630	0.00	0.00	0.00	5.34
2989	8805	8.932945	TGAATGCTTGTTTATTTGTGTGTTTA	57.067	26.923	0.00	0.00	0.00	2.01
2990	8806	7.840342	TGAATGCTTGTTTATTTGTGTGTTT	57.160	28.000	0.00	0.00	0.00	2.83
2991	8807	7.495279	ACATGAATGCTTGTTTATTTGTGTGTT	59.505	29.630	0.00	0.00	0.00	3.32
3208	9146	3.519510	TGGTCAGTTAGCCTAGCTGAATT	59.480	43.478	18.33	0.00	45.51	2.17
3243	9181	2.223340	CCTGACTGACAGTTGTTGCAAC	60.223	50.000	22.83	22.83	44.40	4.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.