Multiple sequence alignment - TraesCS5A01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G281000 chr5A 100.000 7185 0 0 1 7185 490050935 490043751 0.000000e+00 13269.0
1 TraesCS5A01G281000 chr5A 98.859 263 3 0 1589 1851 451457880 451458142 3.030000e-128 470.0
2 TraesCS5A01G281000 chr5A 97.770 269 6 0 1589 1857 596587302 596587570 1.410000e-126 464.0
3 TraesCS5A01G281000 chr5A 77.439 656 93 23 5524 6172 489900994 489900387 2.480000e-89 340.0
4 TraesCS5A01G281000 chr5A 78.125 416 70 11 5769 6174 491937069 491937473 2.000000e-60 244.0
5 TraesCS5A01G281000 chr5A 90.698 129 12 0 5157 5285 489901371 489901243 9.580000e-39 172.0
6 TraesCS5A01G281000 chr5A 83.708 178 29 0 5320 5497 489901238 489901061 1.240000e-37 169.0
7 TraesCS5A01G281000 chr5A 79.096 177 21 13 6984 7150 681229639 681229469 2.740000e-19 108.0
8 TraesCS5A01G281000 chr5A 80.142 141 24 4 561 701 453842744 453842608 1.280000e-17 102.0
9 TraesCS5A01G281000 chr5A 86.747 83 9 1 996 1076 491709263 491709181 2.760000e-14 91.6
10 TraesCS5A01G281000 chr5A 93.333 45 0 2 2549 2590 489906576 489906532 6.020000e-06 63.9
11 TraesCS5A01G281000 chr5B 92.947 2311 97 22 3232 5500 465865240 465862954 0.000000e+00 3304.0
12 TraesCS5A01G281000 chr5B 93.119 901 50 10 5547 6445 465862951 465862061 0.000000e+00 1310.0
13 TraesCS5A01G281000 chr5B 91.249 857 31 20 736 1590 465867713 465866899 0.000000e+00 1127.0
14 TraesCS5A01G281000 chr5B 96.093 691 21 4 2558 3242 465866104 465865414 0.000000e+00 1122.0
15 TraesCS5A01G281000 chr5B 87.193 773 34 20 1846 2560 465866905 465866140 0.000000e+00 819.0
16 TraesCS5A01G281000 chr5B 87.031 586 71 3 4702 5283 465592278 465591694 0.000000e+00 656.0
17 TraesCS5A01G281000 chr5B 88.909 550 37 11 2025 2550 469154384 469154933 0.000000e+00 656.0
18 TraesCS5A01G281000 chr5B 78.032 874 131 29 5324 6172 465591686 465590849 1.800000e-135 494.0
19 TraesCS5A01G281000 chr5B 91.440 257 17 2 2025 2276 693758412 693758156 1.480000e-91 348.0
20 TraesCS5A01G281000 chr5B 83.922 255 23 6 6562 6809 465862038 465861795 2.020000e-55 228.0
21 TraesCS5A01G281000 chr5B 92.617 149 11 0 2402 2550 472320762 472320910 1.570000e-51 215.0
22 TraesCS5A01G281000 chr5B 82.569 109 16 3 4290 4396 485912068 485912175 7.670000e-15 93.5
23 TraesCS5A01G281000 chr5B 82.022 89 8 3 996 1076 467167822 467167910 1.290000e-07 69.4
24 TraesCS5A01G281000 chr5D 90.383 1830 111 25 4015 5797 387322734 387320923 0.000000e+00 2344.0
25 TraesCS5A01G281000 chr5D 93.291 790 33 8 5786 6559 387320905 387320120 0.000000e+00 1147.0
26 TraesCS5A01G281000 chr5D 90.323 744 31 10 1849 2559 387323827 387323092 0.000000e+00 937.0
27 TraesCS5A01G281000 chr5D 89.368 696 35 11 897 1590 387324483 387323825 0.000000e+00 839.0
28 TraesCS5A01G281000 chr5D 83.180 761 124 3 4526 5283 387117842 387117083 0.000000e+00 693.0
29 TraesCS5A01G281000 chr5D 86.519 586 74 3 4702 5283 387195504 387194920 2.190000e-179 640.0
30 TraesCS5A01G281000 chr5D 84.105 648 30 24 6562 7185 387320045 387319447 6.300000e-155 558.0
31 TraesCS5A01G281000 chr5D 77.689 874 134 30 5324 6172 387194912 387194075 1.810000e-130 477.0
32 TraesCS5A01G281000 chr5D 77.511 667 93 25 5515 6172 387116850 387116232 1.480000e-91 348.0
33 TraesCS5A01G281000 chr5D 84.694 294 23 7 2558 2851 387323055 387322784 2.550000e-69 274.0
34 TraesCS5A01G281000 chr5D 79.146 398 66 8 5787 6174 388828155 388828545 7.150000e-65 259.0
35 TraesCS5A01G281000 chr5D 85.333 225 31 2 469 693 363221961 363222183 1.560000e-56 231.0
36 TraesCS5A01G281000 chr5D 83.957 187 30 0 4524 4710 387195724 387195538 5.730000e-41 180.0
37 TraesCS5A01G281000 chr5D 84.270 178 28 0 5320 5497 387117076 387116899 2.660000e-39 174.0
38 TraesCS5A01G281000 chr5D 87.500 120 8 3 750 865 387324669 387324553 1.630000e-26 132.0
39 TraesCS5A01G281000 chr5D 87.671 73 7 1 1006 1076 388815259 388815331 4.620000e-12 84.2
40 TraesCS5A01G281000 chr5D 95.833 48 1 1 1018 1064 387119177 387119130 7.730000e-10 76.8
41 TraesCS5A01G281000 chr6B 89.273 550 35 9 2025 2550 500603626 500603077 0.000000e+00 667.0
42 TraesCS5A01G281000 chr6B 98.120 266 5 0 1589 1854 712458222 712457957 1.410000e-126 464.0
43 TraesCS5A01G281000 chr6B 91.051 257 18 2 2025 2276 344996438 344996182 6.900000e-90 342.0
44 TraesCS5A01G281000 chr2A 90.965 487 41 3 211 696 5485988 5485504 0.000000e+00 652.0
45 TraesCS5A01G281000 chr2A 86.466 133 13 2 31 163 5486108 5485981 2.700000e-29 141.0
46 TraesCS5A01G281000 chr7B 98.566 279 2 2 1588 1865 153573423 153573146 6.480000e-135 492.0
47 TraesCS5A01G281000 chr7B 98.859 263 3 0 1589 1851 196712802 196713064 3.030000e-128 470.0
48 TraesCS5A01G281000 chr2B 87.359 443 29 15 2025 2441 333549189 333548748 3.900000e-132 483.0
49 TraesCS5A01G281000 chr2B 86.996 446 28 12 2025 2441 333541373 333540929 6.520000e-130 475.0
50 TraesCS5A01G281000 chr2B 98.485 264 4 0 1588 1851 450718231 450718494 3.930000e-127 466.0
51 TraesCS5A01G281000 chr2B 86.076 79 7 3 7074 7148 609140601 609140679 1.660000e-11 82.4
52 TraesCS5A01G281000 chrUn 98.859 263 3 0 1589 1851 83540825 83541087 3.030000e-128 470.0
53 TraesCS5A01G281000 chr7A 98.479 263 4 0 1589 1851 722352916 722353178 1.410000e-126 464.0
54 TraesCS5A01G281000 chr4A 97.398 269 7 0 1586 1854 107265308 107265040 6.570000e-125 459.0
55 TraesCS5A01G281000 chr4A 90.272 257 20 2 2025 2276 726526068 726526324 1.490000e-86 331.0
56 TraesCS5A01G281000 chr4A 75.148 169 28 11 524 684 411144298 411144136 4.650000e-07 67.6
57 TraesCS5A01G281000 chr3B 82.079 279 40 7 417 693 672648052 672647782 5.610000e-56 230.0
58 TraesCS5A01G281000 chr3B 80.804 224 39 3 470 693 672637751 672637532 9.580000e-39 172.0
59 TraesCS5A01G281000 chr6A 84.545 220 30 4 467 686 48711519 48711304 1.570000e-51 215.0
60 TraesCS5A01G281000 chr6A 84.080 201 27 4 494 694 421775670 421775865 9.520000e-44 189.0
61 TraesCS5A01G281000 chr7D 83.571 140 17 6 554 693 390086028 390086161 7.570000e-25 126.0
62 TraesCS5A01G281000 chr7D 92.593 54 3 1 4425 4478 215058830 215058778 7.730000e-10 76.8
63 TraesCS5A01G281000 chr7D 90.000 60 5 1 4337 4396 587846230 587846172 7.730000e-10 76.8
64 TraesCS5A01G281000 chr1B 85.185 108 12 3 4291 4396 245953844 245953949 2.740000e-19 108.0
65 TraesCS5A01G281000 chr1B 75.281 178 38 6 6967 7139 593245468 593245292 5.970000e-11 80.5
66 TraesCS5A01G281000 chr4D 81.890 127 20 3 561 687 21698206 21698329 3.550000e-18 104.0
67 TraesCS5A01G281000 chr3D 92.157 51 2 2 1029 1077 419971510 419971560 3.600000e-08 71.3
68 TraesCS5A01G281000 chr4B 83.333 72 6 3 7081 7148 626406443 626406512 2.160000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G281000 chr5A 490043751 490050935 7184 True 13269.000000 13269 100.000000 1 7185 1 chr5A.!!$R3 7184
1 TraesCS5A01G281000 chr5A 489900387 489901371 984 True 227.000000 340 83.948333 5157 6172 3 chr5A.!!$R6 1015
2 TraesCS5A01G281000 chr5B 465861795 465867713 5918 True 1318.333333 3304 90.753833 736 6809 6 chr5B.!!$R3 6073
3 TraesCS5A01G281000 chr5B 469154384 469154933 549 False 656.000000 656 88.909000 2025 2550 1 chr5B.!!$F2 525
4 TraesCS5A01G281000 chr5B 465590849 465592278 1429 True 575.000000 656 82.531500 4702 6172 2 chr5B.!!$R2 1470
5 TraesCS5A01G281000 chr5D 387319447 387324669 5222 True 890.142857 2344 88.523429 750 7185 7 chr5D.!!$R3 6435
6 TraesCS5A01G281000 chr5D 387194075 387195724 1649 True 432.333333 640 82.721667 4524 6172 3 chr5D.!!$R2 1648
7 TraesCS5A01G281000 chr5D 387116232 387119177 2945 True 322.950000 693 85.198500 1018 6172 4 chr5D.!!$R1 5154
8 TraesCS5A01G281000 chr6B 500603077 500603626 549 True 667.000000 667 89.273000 2025 2550 1 chr6B.!!$R2 525
9 TraesCS5A01G281000 chr2A 5485504 5486108 604 True 396.500000 652 88.715500 31 696 2 chr2A.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.033920 GCAAAAGGGCCCTGTTTCAG 59.966 55.0 29.50 15.94 0.00 3.02 F
701 702 0.108089 TAGCGCTGCCCGATGTTTAA 60.108 50.0 22.90 0.00 40.02 1.52 F
1613 1664 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.0 8.23 0.00 41.33 3.55 F
1844 1895 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.0 6.13 0.00 40.63 4.63 F
3578 4001 0.399091 TCTATGGGGCTCTGTCTGGG 60.399 60.0 0.00 0.00 0.00 4.45 F
3932 4355 0.109532 TTTGGTGCGGTGATGAGGAA 59.890 50.0 0.00 0.00 0.00 3.36 F
3933 4356 0.327924 TTGGTGCGGTGATGAGGAAT 59.672 50.0 0.00 0.00 0.00 3.01 F
5641 6299 0.322456 TGGATGGAAGTTTGCCTCGG 60.322 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1645 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.0 40.63 4.63 R
1836 1887 0.750546 TGACATACTCCCTCCGTCCG 60.751 60.000 0.00 0.0 0.00 4.79 R
3567 3990 0.036022 ACTTTCAGCCCAGACAGAGC 59.964 55.000 0.00 0.0 0.00 4.09 R
3591 4014 1.225855 TAAGCAACACACTTGCCGAG 58.774 50.000 1.45 0.0 45.98 4.63 R
5211 5795 0.872388 GAACAACCGGACACCATCAC 59.128 55.000 9.46 0.0 0.00 3.06 R
5407 6021 1.471501 GCATACTGGATGTGAGCACGA 60.472 52.381 1.15 0.0 37.90 4.35 R
5820 6532 1.672854 CTCCCGGCGTCTCATTGGTA 61.673 60.000 6.01 0.0 0.00 3.25 R
6666 7471 0.031857 TGAAATGCGTTGGCCTGTTG 59.968 50.000 3.32 0.0 38.85 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.681939 TGATGTTTAAGGAAAAAGCTATCGT 57.318 32.000 0.00 0.00 0.00 3.73
25 26 8.106247 TGATGTTTAAGGAAAAAGCTATCGTT 57.894 30.769 0.00 0.00 0.00 3.85
26 27 8.234546 TGATGTTTAAGGAAAAAGCTATCGTTC 58.765 33.333 5.60 0.00 0.00 3.95
27 28 7.499321 TGTTTAAGGAAAAAGCTATCGTTCA 57.501 32.000 5.60 0.00 0.00 3.18
28 29 7.581476 TGTTTAAGGAAAAAGCTATCGTTCAG 58.419 34.615 5.60 0.00 0.00 3.02
29 30 7.227910 TGTTTAAGGAAAAAGCTATCGTTCAGT 59.772 33.333 5.60 0.00 0.00 3.41
59 60 1.269166 CGCCATCTTGTACGTGAGAC 58.731 55.000 0.00 0.00 0.00 3.36
83 84 1.082019 TCCTATGTGGGCCCACTCA 59.918 57.895 45.89 33.88 46.30 3.41
90 91 1.616327 TGGGCCCACTCAGCACTAT 60.616 57.895 24.45 0.00 33.68 2.12
91 92 0.326143 TGGGCCCACTCAGCACTATA 60.326 55.000 24.45 0.00 33.68 1.31
92 93 1.059913 GGGCCCACTCAGCACTATAT 58.940 55.000 19.95 0.00 0.00 0.86
93 94 2.257207 GGGCCCACTCAGCACTATATA 58.743 52.381 19.95 0.00 0.00 0.86
94 95 2.840651 GGGCCCACTCAGCACTATATAT 59.159 50.000 19.95 0.00 0.00 0.86
109 110 8.845227 AGCACTATATATCTCTACAATGATCGG 58.155 37.037 0.00 0.00 0.00 4.18
115 116 3.418047 TCTCTACAATGATCGGCGGATA 58.582 45.455 7.21 0.00 31.51 2.59
120 121 4.265904 ACAATGATCGGCGGATATAACA 57.734 40.909 7.21 1.45 31.51 2.41
121 122 4.637276 ACAATGATCGGCGGATATAACAA 58.363 39.130 7.21 0.00 31.51 2.83
130 131 3.181510 GGCGGATATAACAAATCGATGCC 60.182 47.826 0.00 0.00 32.99 4.40
172 173 4.389576 GCCGCTGCTTCCGTGTTG 62.390 66.667 0.00 0.00 33.53 3.33
173 174 3.726517 CCGCTGCTTCCGTGTTGG 61.727 66.667 0.00 0.00 40.09 3.77
174 175 3.726517 CGCTGCTTCCGTGTTGGG 61.727 66.667 0.00 0.00 38.76 4.12
175 176 4.043200 GCTGCTTCCGTGTTGGGC 62.043 66.667 0.00 0.00 38.76 5.36
176 177 2.281761 CTGCTTCCGTGTTGGGCT 60.282 61.111 0.00 0.00 38.76 5.19
177 178 2.594303 TGCTTCCGTGTTGGGCTG 60.594 61.111 0.00 0.00 38.76 4.85
178 179 2.594592 GCTTCCGTGTTGGGCTGT 60.595 61.111 0.00 0.00 38.76 4.40
179 180 2.617274 GCTTCCGTGTTGGGCTGTC 61.617 63.158 0.00 0.00 38.76 3.51
180 181 1.071471 CTTCCGTGTTGGGCTGTCT 59.929 57.895 0.00 0.00 38.76 3.41
181 182 1.227823 TTCCGTGTTGGGCTGTCTG 60.228 57.895 0.00 0.00 38.76 3.51
182 183 3.357079 CCGTGTTGGGCTGTCTGC 61.357 66.667 0.00 0.00 41.94 4.26
183 184 3.716006 CGTGTTGGGCTGTCTGCG 61.716 66.667 0.00 0.00 44.05 5.18
192 193 3.108289 CTGTCTGCGCTCGTGGTG 61.108 66.667 9.73 0.00 0.00 4.17
199 200 4.700365 CGCTCGTGGTGCACTCGA 62.700 66.667 25.94 25.94 42.16 4.04
202 203 3.295273 TCGTGGTGCACTCGAGCT 61.295 61.111 24.74 0.00 39.84 4.09
203 204 2.807045 CGTGGTGCACTCGAGCTC 60.807 66.667 22.87 2.73 38.27 4.09
204 205 2.807045 GTGGTGCACTCGAGCTCG 60.807 66.667 30.03 30.03 41.45 5.03
205 206 4.056125 TGGTGCACTCGAGCTCGG 62.056 66.667 33.98 25.75 40.29 4.63
207 208 4.724602 GTGCACTCGAGCTCGGCA 62.725 66.667 33.98 30.34 40.29 5.69
208 209 4.724602 TGCACTCGAGCTCGGCAC 62.725 66.667 33.98 21.19 40.29 5.01
256 257 3.854669 CCGCCCCAGCTCCTACAG 61.855 72.222 0.00 0.00 36.60 2.74
277 278 0.901124 AGTGCTCACCTCACTGGATC 59.099 55.000 0.00 0.00 42.63 3.36
280 281 0.177604 GCTCACCTCACTGGATCTGG 59.822 60.000 0.00 0.00 39.71 3.86
289 290 3.743521 TCACTGGATCTGGTTGAACAAG 58.256 45.455 0.00 0.00 0.00 3.16
290 291 2.227388 CACTGGATCTGGTTGAACAAGC 59.773 50.000 9.38 9.38 39.12 4.01
325 326 1.070786 ACAAAGTCGGTCGGCATGT 59.929 52.632 0.00 0.00 0.00 3.21
338 339 2.467826 GCATGTCGCCAAGCTCCTC 61.468 63.158 0.00 0.00 32.65 3.71
340 341 0.461548 CATGTCGCCAAGCTCCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
363 364 3.818787 GGCGGCAAGGCATCACAG 61.819 66.667 3.07 0.00 45.92 3.66
378 379 1.403679 TCACAGGCGGTTTTGTTTCTG 59.596 47.619 0.00 0.00 0.00 3.02
402 403 2.095617 GCAAAGGGCATGTTTCAATTGC 60.096 45.455 0.00 1.27 43.97 3.56
430 431 1.006220 CTTCGTTGCAAAAGGGCCC 60.006 57.895 16.46 16.46 0.00 5.80
438 439 0.033920 GCAAAAGGGCCCTGTTTCAG 59.966 55.000 29.50 15.94 0.00 3.02
439 440 1.703411 CAAAAGGGCCCTGTTTCAGA 58.297 50.000 29.50 0.00 32.44 3.27
477 478 8.611757 CCCTAAATTATTATTTGCAACAAAGCC 58.388 33.333 0.00 0.00 35.61 4.35
495 496 6.692392 CAAAGCCTTTGTTACGAAAAACTTC 58.308 36.000 9.06 0.00 35.94 3.01
498 499 5.124936 AGCCTTTGTTACGAAAAACTTCTGT 59.875 36.000 0.00 0.00 0.00 3.41
509 510 8.428186 ACGAAAAACTTCTGTAACAAGACATA 57.572 30.769 0.00 0.00 0.00 2.29
519 520 8.785329 TCTGTAACAAGACATATGTTGCATAA 57.215 30.769 10.30 1.26 46.99 1.90
520 521 9.394767 TCTGTAACAAGACATATGTTGCATAAT 57.605 29.630 10.30 0.00 46.99 1.28
568 569 4.448732 GTGGAAATTTTCTGCAACATCACC 59.551 41.667 8.93 0.00 0.00 4.02
584 585 1.480137 TCACCCTTGTTGCAAAAGTGG 59.520 47.619 0.00 12.29 0.00 4.00
590 591 2.376808 TGTTGCAAAAGTGGTGGTTG 57.623 45.000 0.00 0.00 0.00 3.77
622 623 1.934589 CATCGGACGGCTATTTGACA 58.065 50.000 0.00 0.00 0.00 3.58
697 698 4.873129 CGTAGCGCTGCCCGATGT 62.873 66.667 22.90 0.00 40.02 3.06
698 699 2.511600 GTAGCGCTGCCCGATGTT 60.512 61.111 22.90 0.00 40.02 2.71
699 700 2.106683 GTAGCGCTGCCCGATGTTT 61.107 57.895 22.90 0.00 40.02 2.83
700 701 0.808453 GTAGCGCTGCCCGATGTTTA 60.808 55.000 22.90 0.00 40.02 2.01
701 702 0.108089 TAGCGCTGCCCGATGTTTAA 60.108 50.000 22.90 0.00 40.02 1.52
702 703 0.748005 AGCGCTGCCCGATGTTTAAT 60.748 50.000 10.39 0.00 40.02 1.40
703 704 0.592247 GCGCTGCCCGATGTTTAATG 60.592 55.000 0.00 0.00 40.02 1.90
704 705 0.732571 CGCTGCCCGATGTTTAATGT 59.267 50.000 0.00 0.00 40.02 2.71
705 706 1.531677 CGCTGCCCGATGTTTAATGTG 60.532 52.381 0.00 0.00 40.02 3.21
706 707 1.472480 GCTGCCCGATGTTTAATGTGT 59.528 47.619 0.00 0.00 0.00 3.72
707 708 2.094752 GCTGCCCGATGTTTAATGTGTT 60.095 45.455 0.00 0.00 0.00 3.32
708 709 3.127895 GCTGCCCGATGTTTAATGTGTTA 59.872 43.478 0.00 0.00 0.00 2.41
709 710 4.380023 GCTGCCCGATGTTTAATGTGTTAA 60.380 41.667 0.00 0.00 0.00 2.01
710 711 5.704888 CTGCCCGATGTTTAATGTGTTAAA 58.295 37.500 0.00 0.00 37.43 1.52
711 712 6.085555 TGCCCGATGTTTAATGTGTTAAAA 57.914 33.333 0.00 0.00 40.43 1.52
712 713 6.513180 TGCCCGATGTTTAATGTGTTAAAAA 58.487 32.000 0.00 0.00 40.43 1.94
753 754 5.941555 TTTTTCCTGAAGGGCAACTTAAA 57.058 34.783 0.00 0.00 40.21 1.52
755 756 5.941555 TTTCCTGAAGGGCAACTTAAAAA 57.058 34.783 0.00 0.00 40.21 1.94
805 806 3.669251 AGAGAGTTTCTCAGGGTTTCG 57.331 47.619 8.64 0.00 45.73 3.46
820 821 3.790416 TTCGCTTTGCCTGCCCAGT 62.790 57.895 0.00 0.00 0.00 4.00
821 822 3.741476 CGCTTTGCCTGCCCAGTC 61.741 66.667 0.00 0.00 0.00 3.51
822 823 2.598394 GCTTTGCCTGCCCAGTCA 60.598 61.111 0.00 0.00 0.00 3.41
865 868 0.872388 GTCACACGCGGATTCCTTTT 59.128 50.000 12.47 0.00 0.00 2.27
893 896 1.530323 AAAATCCCGAACGAACTGGG 58.470 50.000 0.00 0.00 44.75 4.45
904 907 3.636282 ACGAACTGGGTGCAAATAAAC 57.364 42.857 0.00 0.00 0.00 2.01
933 976 2.317371 AGAGGGCTCAAGAGTCAGAA 57.683 50.000 3.88 0.00 33.98 3.02
941 984 1.898472 TCAAGAGTCAGAAGAGGCAGG 59.102 52.381 0.00 0.00 0.00 4.85
946 989 3.393970 CAGAAGAGGCAGGGCGGA 61.394 66.667 0.00 0.00 0.00 5.54
976 1019 0.604511 ATTTTCCGTGTCGACCCACC 60.605 55.000 14.12 0.00 31.47 4.61
987 1031 2.687200 ACCCACCGGCTGCTATCA 60.687 61.111 0.00 0.00 0.00 2.15
1012 1056 0.939577 CCGTCTTATGATGTCGCCGG 60.940 60.000 0.00 0.00 0.00 6.13
1076 1120 2.474359 CACTGCTTCTTCGTCTCTGTTG 59.526 50.000 0.00 0.00 0.00 3.33
1110 1154 3.465990 CCCTGTCTGGCACATACTG 57.534 57.895 0.00 0.00 38.20 2.74
1134 1178 6.439375 TGTAGGTCTCAAATTCAGGCTACTAA 59.561 38.462 0.00 0.00 0.00 2.24
1135 1179 5.983540 AGGTCTCAAATTCAGGCTACTAAG 58.016 41.667 0.00 0.00 0.00 2.18
1136 1180 5.485708 AGGTCTCAAATTCAGGCTACTAAGT 59.514 40.000 0.00 0.00 0.00 2.24
1137 1181 6.668283 AGGTCTCAAATTCAGGCTACTAAGTA 59.332 38.462 0.00 0.00 0.00 2.24
1147 1191 5.832060 TCAGGCTACTAAGTATTACTCCACC 59.168 44.000 0.00 0.00 0.00 4.61
1161 1205 0.250945 TCCACCGCCTTATGCAACAA 60.251 50.000 0.00 0.00 41.33 2.83
1228 1272 1.295423 GTAGGGAGGCGTGCAAAGA 59.705 57.895 0.00 0.00 0.00 2.52
1318 1362 8.432110 TGGAAATTTTACAAGAAAGCTTTTCC 57.568 30.769 14.05 11.60 34.16 3.13
1319 1363 8.264347 TGGAAATTTTACAAGAAAGCTTTTCCT 58.736 29.630 14.05 3.70 34.45 3.36
1320 1364 9.109393 GGAAATTTTACAAGAAAGCTTTTCCTT 57.891 29.630 14.05 10.10 32.30 3.36
1561 1612 7.491048 TGTTTCTCAAACTGGCAAAAGATTAAC 59.509 33.333 1.11 0.00 41.90 2.01
1602 1653 2.274760 AGGTACTCCCTCCGTCCG 59.725 66.667 0.00 0.00 40.71 4.79
1603 1654 3.525545 GGTACTCCCTCCGTCCGC 61.526 72.222 0.00 0.00 0.00 5.54
1604 1655 3.885521 GTACTCCCTCCGTCCGCG 61.886 72.222 0.00 0.00 37.95 6.46
1605 1656 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
1606 1657 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
1607 1658 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
1608 1659 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1609 1660 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1610 1661 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1611 1662 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1612 1663 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1613 1664 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1614 1665 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1615 1666 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1616 1667 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
1617 1668 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
1618 1669 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
1619 1670 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
1620 1671 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
1621 1672 5.276270 GTCCGCGAATAAGTGTACATCTAA 58.724 41.667 8.23 0.00 0.00 2.10
1622 1673 5.172771 GTCCGCGAATAAGTGTACATCTAAC 59.827 44.000 8.23 0.00 0.00 2.34
1623 1674 5.066893 TCCGCGAATAAGTGTACATCTAACT 59.933 40.000 8.23 0.00 0.00 2.24
1624 1675 5.747197 CCGCGAATAAGTGTACATCTAACTT 59.253 40.000 8.23 0.00 37.82 2.66
1625 1676 6.255020 CCGCGAATAAGTGTACATCTAACTTT 59.745 38.462 8.23 0.00 35.77 2.66
1626 1677 7.201496 CCGCGAATAAGTGTACATCTAACTTTT 60.201 37.037 8.23 0.00 35.77 2.27
1627 1678 7.630987 CGCGAATAAGTGTACATCTAACTTTTG 59.369 37.037 0.00 0.00 35.77 2.44
1628 1679 8.440833 GCGAATAAGTGTACATCTAACTTTTGT 58.559 33.333 0.00 0.00 35.77 2.83
1735 1786 9.878599 AAAGTACATTTCAAAACGAATCTAGTG 57.121 29.630 0.00 0.00 32.32 2.74
1736 1787 8.827177 AGTACATTTCAAAACGAATCTAGTGA 57.173 30.769 0.00 0.00 32.32 3.41
1737 1788 9.436957 AGTACATTTCAAAACGAATCTAGTGAT 57.563 29.630 0.00 0.00 32.32 3.06
1740 1791 9.436957 ACATTTCAAAACGAATCTAGTGATACT 57.563 29.630 0.00 0.00 32.32 2.12
1748 1799 9.886132 AAACGAATCTAGTGATACTAATTTGGT 57.114 29.630 0.00 0.00 29.00 3.67
1749 1800 8.873215 ACGAATCTAGTGATACTAATTTGGTG 57.127 34.615 0.00 0.00 29.00 4.17
1750 1801 7.438459 ACGAATCTAGTGATACTAATTTGGTGC 59.562 37.037 0.00 0.00 29.00 5.01
1751 1802 7.095607 CGAATCTAGTGATACTAATTTGGTGCC 60.096 40.741 0.00 0.00 29.00 5.01
1752 1803 6.553953 TCTAGTGATACTAATTTGGTGCCA 57.446 37.500 0.00 0.00 29.00 4.92
1753 1804 7.136822 TCTAGTGATACTAATTTGGTGCCAT 57.863 36.000 0.00 0.00 29.00 4.40
1754 1805 8.257602 TCTAGTGATACTAATTTGGTGCCATA 57.742 34.615 0.00 0.00 29.00 2.74
1755 1806 8.710239 TCTAGTGATACTAATTTGGTGCCATAA 58.290 33.333 0.00 0.00 29.00 1.90
1756 1807 9.337396 CTAGTGATACTAATTTGGTGCCATAAA 57.663 33.333 0.00 0.00 29.00 1.40
1757 1808 8.766994 AGTGATACTAATTTGGTGCCATAAAT 57.233 30.769 0.00 0.00 0.00 1.40
1758 1809 8.632679 AGTGATACTAATTTGGTGCCATAAATG 58.367 33.333 0.00 0.00 0.00 2.32
1759 1810 7.382218 GTGATACTAATTTGGTGCCATAAATGC 59.618 37.037 0.00 0.00 0.00 3.56
1760 1811 5.937975 ACTAATTTGGTGCCATAAATGCT 57.062 34.783 0.00 0.00 0.00 3.79
1761 1812 6.298441 ACTAATTTGGTGCCATAAATGCTT 57.702 33.333 0.00 0.00 0.00 3.91
1762 1813 6.710278 ACTAATTTGGTGCCATAAATGCTTT 58.290 32.000 0.00 0.00 0.00 3.51
1763 1814 7.167535 ACTAATTTGGTGCCATAAATGCTTTT 58.832 30.769 2.86 2.86 0.00 2.27
1764 1815 8.317679 ACTAATTTGGTGCCATAAATGCTTTTA 58.682 29.630 7.20 7.20 0.00 1.52
1765 1816 6.983474 ATTTGGTGCCATAAATGCTTTTAC 57.017 33.333 6.92 0.00 30.33 2.01
1766 1817 5.736951 TTGGTGCCATAAATGCTTTTACT 57.263 34.783 6.92 0.00 30.33 2.24
1767 1818 5.323371 TGGTGCCATAAATGCTTTTACTC 57.677 39.130 6.92 1.42 30.33 2.59
1768 1819 5.016173 TGGTGCCATAAATGCTTTTACTCT 58.984 37.500 6.92 0.00 30.33 3.24
1769 1820 5.480073 TGGTGCCATAAATGCTTTTACTCTT 59.520 36.000 6.92 0.00 30.33 2.85
1770 1821 6.014669 TGGTGCCATAAATGCTTTTACTCTTT 60.015 34.615 6.92 0.00 30.33 2.52
1771 1822 6.531594 GGTGCCATAAATGCTTTTACTCTTTC 59.468 38.462 6.92 0.00 30.33 2.62
1772 1823 6.531594 GTGCCATAAATGCTTTTACTCTTTCC 59.468 38.462 6.92 0.00 30.33 3.13
1773 1824 6.437162 TGCCATAAATGCTTTTACTCTTTCCT 59.563 34.615 6.92 0.00 30.33 3.36
1774 1825 7.613801 TGCCATAAATGCTTTTACTCTTTCCTA 59.386 33.333 6.92 0.00 30.33 2.94
1775 1826 8.131731 GCCATAAATGCTTTTACTCTTTCCTAG 58.868 37.037 6.92 0.00 30.33 3.02
1776 1827 9.396022 CCATAAATGCTTTTACTCTTTCCTAGA 57.604 33.333 6.92 0.00 30.33 2.43
1780 1831 7.929941 ATGCTTTTACTCTTTCCTAGAAAGG 57.070 36.000 15.16 9.56 45.21 3.11
1781 1832 6.838382 TGCTTTTACTCTTTCCTAGAAAGGT 58.162 36.000 15.16 13.69 44.09 3.50
1782 1833 6.710744 TGCTTTTACTCTTTCCTAGAAAGGTG 59.289 38.462 15.16 11.38 44.09 4.00
1783 1834 6.149640 GCTTTTACTCTTTCCTAGAAAGGTGG 59.850 42.308 15.16 9.44 44.09 4.61
1784 1835 6.758806 TTTACTCTTTCCTAGAAAGGTGGT 57.241 37.500 15.16 13.41 44.09 4.16
1785 1836 4.893829 ACTCTTTCCTAGAAAGGTGGTC 57.106 45.455 15.16 0.00 44.09 4.02
1786 1837 4.232091 ACTCTTTCCTAGAAAGGTGGTCA 58.768 43.478 15.16 0.00 44.09 4.02
1787 1838 4.658901 ACTCTTTCCTAGAAAGGTGGTCAA 59.341 41.667 15.16 0.00 44.09 3.18
1788 1839 5.132144 ACTCTTTCCTAGAAAGGTGGTCAAA 59.868 40.000 15.16 0.00 44.09 2.69
1789 1840 5.621193 TCTTTCCTAGAAAGGTGGTCAAAG 58.379 41.667 15.16 2.36 44.09 2.77
1790 1841 5.132144 TCTTTCCTAGAAAGGTGGTCAAAGT 59.868 40.000 15.16 0.00 44.09 2.66
1791 1842 6.328148 TCTTTCCTAGAAAGGTGGTCAAAGTA 59.672 38.462 15.16 0.00 44.09 2.24
1792 1843 6.697641 TTCCTAGAAAGGTGGTCAAAGTAT 57.302 37.500 0.00 0.00 44.09 2.12
1793 1844 6.697641 TCCTAGAAAGGTGGTCAAAGTATT 57.302 37.500 0.00 0.00 44.09 1.89
1794 1845 7.801893 TCCTAGAAAGGTGGTCAAAGTATTA 57.198 36.000 0.00 0.00 44.09 0.98
1795 1846 8.209802 TCCTAGAAAGGTGGTCAAAGTATTAA 57.790 34.615 0.00 0.00 44.09 1.40
1796 1847 8.662255 TCCTAGAAAGGTGGTCAAAGTATTAAA 58.338 33.333 0.00 0.00 44.09 1.52
1797 1848 9.292195 CCTAGAAAGGTGGTCAAAGTATTAAAA 57.708 33.333 0.00 0.00 38.19 1.52
1799 1850 8.762481 AGAAAGGTGGTCAAAGTATTAAAACT 57.238 30.769 0.00 0.00 0.00 2.66
1800 1851 9.197306 AGAAAGGTGGTCAAAGTATTAAAACTT 57.803 29.630 0.00 0.00 41.46 2.66
1820 1871 9.788960 AAAACTTTGACTTAAGACAAAAGCTAG 57.211 29.630 25.68 18.71 38.68 3.42
1821 1872 8.732746 AACTTTGACTTAAGACAAAAGCTAGA 57.267 30.769 25.68 9.24 38.68 2.43
1822 1873 8.910351 ACTTTGACTTAAGACAAAAGCTAGAT 57.090 30.769 25.68 9.44 38.68 1.98
1823 1874 8.778358 ACTTTGACTTAAGACAAAAGCTAGATG 58.222 33.333 25.68 16.98 38.68 2.90
1824 1875 8.677148 TTTGACTTAAGACAAAAGCTAGATGT 57.323 30.769 24.34 0.00 36.92 3.06
1825 1876 9.772973 TTTGACTTAAGACAAAAGCTAGATGTA 57.227 29.630 24.34 4.07 36.92 2.29
1826 1877 8.758633 TGACTTAAGACAAAAGCTAGATGTAC 57.241 34.615 10.09 0.00 0.00 2.90
1827 1878 8.364894 TGACTTAAGACAAAAGCTAGATGTACA 58.635 33.333 10.09 0.00 0.00 2.90
1828 1879 8.535690 ACTTAAGACAAAAGCTAGATGTACAC 57.464 34.615 10.09 0.00 0.00 2.90
1829 1880 8.368668 ACTTAAGACAAAAGCTAGATGTACACT 58.631 33.333 10.09 0.13 0.00 3.55
1830 1881 9.209175 CTTAAGACAAAAGCTAGATGTACACTT 57.791 33.333 0.00 0.00 0.00 3.16
1833 1884 9.726438 AAGACAAAAGCTAGATGTACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
1834 1885 9.372369 AGACAAAAGCTAGATGTACACTTATTC 57.628 33.333 0.00 0.00 0.00 1.75
1835 1886 8.186178 ACAAAAGCTAGATGTACACTTATTCG 57.814 34.615 0.00 0.00 0.00 3.34
1836 1887 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
1837 1888 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
1838 1889 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
1839 1890 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
1840 1891 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
1841 1892 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
1842 1893 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1843 1894 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
1844 1895 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
1845 1896 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
1846 1897 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1847 1898 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1888 1939 9.947669 GCTGATAACGGAATACTATAACGATAT 57.052 33.333 0.00 0.00 0.00 1.63
1942 1993 0.445436 GAGTGAACTGCAATCGGCTG 59.555 55.000 0.00 0.00 45.15 4.85
1977 2036 4.757149 AGCTGTGATTCTGTTCCAACTTAC 59.243 41.667 0.00 0.00 0.00 2.34
2007 2091 4.229876 GCACTTTTAATTCTCCAGCACAC 58.770 43.478 0.00 0.00 0.00 3.82
2087 2205 4.479158 ACTATTTTTCCTGGAACCAGCAA 58.521 39.130 9.04 4.21 42.35 3.91
2107 2225 5.182001 AGCAACATCTTGTGTCTCATTTACC 59.818 40.000 0.00 0.00 41.14 2.85
2115 2233 7.103641 TCTTGTGTCTCATTTACCCTGATTAC 58.896 38.462 0.00 0.00 0.00 1.89
2117 2235 7.727578 TGTGTCTCATTTACCCTGATTACTA 57.272 36.000 0.00 0.00 0.00 1.82
2118 2236 7.553334 TGTGTCTCATTTACCCTGATTACTAC 58.447 38.462 0.00 0.00 0.00 2.73
2119 2237 6.696148 GTGTCTCATTTACCCTGATTACTACG 59.304 42.308 0.00 0.00 0.00 3.51
2120 2238 6.183360 TGTCTCATTTACCCTGATTACTACGG 60.183 42.308 0.00 0.00 0.00 4.02
2122 2240 5.909477 TCATTTACCCTGATTACTACGGTG 58.091 41.667 0.00 0.00 0.00 4.94
2126 2257 4.895668 ACCCTGATTACTACGGTGAAAA 57.104 40.909 0.00 0.00 0.00 2.29
2164 2296 1.484240 CAGCTTGTCCTTAGCCTAGCT 59.516 52.381 0.00 0.00 43.41 3.32
2243 2375 3.191581 CACGGCCATGTGTTTTACCATTA 59.808 43.478 2.24 0.00 35.12 1.90
2261 2393 4.385199 CCATTAAGCTACCCAGTGATTCCA 60.385 45.833 0.00 0.00 0.00 3.53
2262 2394 2.789409 AAGCTACCCAGTGATTCCAC 57.211 50.000 0.00 0.00 43.50 4.02
2350 2538 6.989659 ACTGAAACAAGAAACTCGTCCTATA 58.010 36.000 0.00 0.00 0.00 1.31
2425 2614 9.760926 ATGTTCAATATACTAGGATGAGCTAGA 57.239 33.333 0.00 0.00 0.00 2.43
2567 2800 1.672881 GAAGATGCCAAACCTCGGATG 59.327 52.381 0.00 0.00 0.00 3.51
2658 2891 4.993705 AGTTTTCTCTACAATGTCCCCA 57.006 40.909 0.00 0.00 0.00 4.96
2691 2924 4.052159 AGGCTTCGTCTGTAGATCATTG 57.948 45.455 0.00 0.00 0.00 2.82
2714 2947 4.381932 GGCTGCCACTTGCTAAAACAATAT 60.382 41.667 15.17 0.00 42.00 1.28
2740 2973 1.542915 GCAGCTTCAGAGATGGCAAAA 59.457 47.619 0.00 0.00 39.66 2.44
2761 2994 1.319614 GCCGGGCCAAGCAGATTTTA 61.320 55.000 8.12 0.00 0.00 1.52
2815 3048 0.460987 CACCCTCTTCTCCGATGCAC 60.461 60.000 0.00 0.00 0.00 4.57
2865 3098 4.502962 GAATGAGAGGACAAGAGTCTTGG 58.497 47.826 31.20 16.55 44.36 3.61
2872 3105 2.079925 GACAAGAGTCTTGGGTCATGC 58.920 52.381 31.20 11.53 41.64 4.06
2956 3190 4.672587 TCTCATTATCACCCCGAAGAAG 57.327 45.455 0.00 0.00 0.00 2.85
2957 3191 4.286707 TCTCATTATCACCCCGAAGAAGA 58.713 43.478 0.00 0.00 0.00 2.87
3038 3276 9.299963 TCATGAATATTTTTGGTAAATTGCTCG 57.700 29.630 0.00 0.00 0.00 5.03
3079 3317 2.892373 TGCATTCTTTAGTTTCGGCG 57.108 45.000 0.00 0.00 0.00 6.46
3115 3353 7.571026 CGTTCATTAGAAGATCCATTCATGAC 58.429 38.462 0.00 0.00 33.63 3.06
3166 3405 4.200092 AGAAGTCACACCAAGAAGAAACC 58.800 43.478 0.00 0.00 0.00 3.27
3176 3415 4.044426 CCAAGAAGAAACCTTTGCTTTCG 58.956 43.478 0.00 0.00 33.56 3.46
3215 3454 1.418637 TGGCTTTAGACTTGGTCCGTT 59.581 47.619 0.00 0.00 32.18 4.44
3216 3455 1.804748 GGCTTTAGACTTGGTCCGTTG 59.195 52.381 0.00 0.00 32.18 4.10
3242 3481 7.038659 GGATTATCCTATCGGAGTTCTCAATG 58.961 42.308 3.59 0.00 44.06 2.82
3243 3482 3.735237 TCCTATCGGAGTTCTCAATGC 57.265 47.619 2.24 0.00 33.30 3.56
3258 3681 5.772521 TCTCAATGCTTTTGGTTTTAGCTC 58.227 37.500 0.00 0.00 35.93 4.09
3341 3764 4.735369 TGGTGATCCAAGAAGGCTTTTTA 58.265 39.130 0.00 0.00 41.25 1.52
3349 3772 4.240096 CAAGAAGGCTTTTTATGCACAGG 58.760 43.478 0.00 0.00 30.14 4.00
3412 3835 3.409026 TTCTTGCTCTGGAACCTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
3414 3837 2.705658 TCTTGCTCTGGAACCTCTTCAA 59.294 45.455 0.00 0.00 0.00 2.69
3421 3844 5.802821 GCTCTGGAACCTCTTCAAAAGATCT 60.803 44.000 0.00 0.00 36.82 2.75
3422 3845 6.192970 TCTGGAACCTCTTCAAAAGATCTT 57.807 37.500 0.88 0.88 36.82 2.40
3455 3878 3.053395 TCTGCTATGGAAAATGGCCTTCT 60.053 43.478 3.32 0.00 0.00 2.85
3483 3906 2.086869 GGTCATGCAAAGAGCTGCTAA 58.913 47.619 0.15 0.00 45.94 3.09
3486 3909 3.063725 GTCATGCAAAGAGCTGCTAAGAG 59.936 47.826 0.15 0.00 45.94 2.85
3514 3937 4.463539 ACCAGTTTTTATGCTGATGATGCA 59.536 37.500 0.00 0.00 44.95 3.96
3546 3969 8.616076 GTTTATAAATCCTGTTGATGGTCTCAG 58.384 37.037 0.31 0.00 34.68 3.35
3567 3990 6.900194 TCAGGTCTTCTAAATTTCTATGGGG 58.100 40.000 0.00 0.00 0.00 4.96
3578 4001 0.399091 TCTATGGGGCTCTGTCTGGG 60.399 60.000 0.00 0.00 0.00 4.45
3591 4014 2.746362 CTGTCTGGGCTGAAAGTGAATC 59.254 50.000 0.00 0.00 35.30 2.52
3707 4130 1.005450 TGCAAGTATTTGGTCCTCCCC 59.995 52.381 0.00 0.00 34.79 4.81
3711 4134 2.772930 AGTATTTGGTCCTCCCCCTAC 58.227 52.381 0.00 0.00 0.00 3.18
3817 4240 1.978617 CAAAATGGGCCGCCTCACT 60.979 57.895 9.86 0.00 0.00 3.41
3818 4241 1.678970 AAAATGGGCCGCCTCACTC 60.679 57.895 9.86 0.00 0.00 3.51
3819 4242 2.142292 AAAATGGGCCGCCTCACTCT 62.142 55.000 9.86 0.00 0.00 3.24
3820 4243 2.826777 AAATGGGCCGCCTCACTCTG 62.827 60.000 9.86 0.00 0.00 3.35
3823 4246 3.075005 GGCCGCCTCACTCTGGTA 61.075 66.667 0.71 0.00 0.00 3.25
3824 4247 2.496817 GCCGCCTCACTCTGGTAG 59.503 66.667 0.00 0.00 0.00 3.18
3854 4277 3.858247 ACTCGGTGCTTATTACTTCACC 58.142 45.455 0.00 0.00 44.04 4.02
3857 4280 4.839121 TCGGTGCTTATTACTTCACCATT 58.161 39.130 10.37 0.00 46.92 3.16
3877 4300 0.257328 TTCACACCTTCCAAGTGGCA 59.743 50.000 0.00 0.00 39.63 4.92
3884 4307 3.763360 CACCTTCCAAGTGGCATATCAAA 59.237 43.478 0.00 0.00 34.44 2.69
3899 4322 9.153721 TGGCATATCAAAAAGATTGACAAAATC 57.846 29.630 0.00 0.00 38.19 2.17
3905 4328 8.160521 TCAAAAAGATTGACAAAATCCGTAGA 57.839 30.769 0.00 0.00 0.00 2.59
3911 4334 6.431234 AGATTGACAAAATCCGTAGAAGCTTT 59.569 34.615 0.00 0.00 0.00 3.51
3929 4352 1.522668 TTCTTTGGTGCGGTGATGAG 58.477 50.000 0.00 0.00 0.00 2.90
3932 4355 0.109532 TTTGGTGCGGTGATGAGGAA 59.890 50.000 0.00 0.00 0.00 3.36
3933 4356 0.327924 TTGGTGCGGTGATGAGGAAT 59.672 50.000 0.00 0.00 0.00 3.01
3934 4357 0.327924 TGGTGCGGTGATGAGGAATT 59.672 50.000 0.00 0.00 0.00 2.17
3935 4358 0.734889 GGTGCGGTGATGAGGAATTG 59.265 55.000 0.00 0.00 0.00 2.32
3937 4360 1.667724 GTGCGGTGATGAGGAATTGAG 59.332 52.381 0.00 0.00 0.00 3.02
3938 4361 1.303309 GCGGTGATGAGGAATTGAGG 58.697 55.000 0.00 0.00 0.00 3.86
3939 4362 1.134401 GCGGTGATGAGGAATTGAGGA 60.134 52.381 0.00 0.00 0.00 3.71
3940 4363 2.486191 GCGGTGATGAGGAATTGAGGAT 60.486 50.000 0.00 0.00 0.00 3.24
3941 4364 3.136763 CGGTGATGAGGAATTGAGGATG 58.863 50.000 0.00 0.00 0.00 3.51
3942 4365 2.883386 GGTGATGAGGAATTGAGGATGC 59.117 50.000 0.00 0.00 0.00 3.91
3943 4366 3.434739 GGTGATGAGGAATTGAGGATGCT 60.435 47.826 0.00 0.00 0.00 3.79
3944 4367 4.202398 GGTGATGAGGAATTGAGGATGCTA 60.202 45.833 0.00 0.00 0.00 3.49
3945 4368 5.371526 GTGATGAGGAATTGAGGATGCTAA 58.628 41.667 0.00 0.00 0.00 3.09
3946 4369 5.824624 GTGATGAGGAATTGAGGATGCTAAA 59.175 40.000 0.00 0.00 0.00 1.85
3947 4370 6.017275 GTGATGAGGAATTGAGGATGCTAAAG 60.017 42.308 0.00 0.00 0.00 1.85
3948 4371 4.785301 TGAGGAATTGAGGATGCTAAAGG 58.215 43.478 0.00 0.00 0.00 3.11
3949 4372 4.474651 TGAGGAATTGAGGATGCTAAAGGA 59.525 41.667 0.00 0.00 0.00 3.36
3950 4373 5.046288 AGGAATTGAGGATGCTAAAGGAG 57.954 43.478 0.00 0.00 0.00 3.69
3972 4395 2.357952 GGAAGTGTTTGGTCAACTGGAC 59.642 50.000 0.00 0.00 46.20 4.02
3984 4407 4.434520 GTCAACTGGACTAAGGTATGCTC 58.565 47.826 0.00 0.00 43.46 4.26
3990 4413 2.826725 GGACTAAGGTATGCTCGCCTAT 59.173 50.000 0.00 0.00 34.15 2.57
4007 4430 7.004555 TCGCCTATAAGATGTGGATGTTTAT 57.995 36.000 0.00 0.00 0.00 1.40
4011 4434 7.573843 GCCTATAAGATGTGGATGTTTATGTGC 60.574 40.741 0.00 0.00 0.00 4.57
4013 4436 5.571784 AAGATGTGGATGTTTATGTGCTG 57.428 39.130 0.00 0.00 0.00 4.41
4019 4442 5.982516 TGTGGATGTTTATGTGCTGAAAAAC 59.017 36.000 0.00 0.00 33.46 2.43
4090 4513 4.439016 GCCTGTGAACGTTTAGTTTCCAAA 60.439 41.667 0.46 0.00 44.35 3.28
4122 4545 0.941542 TAGTTTGCGTGTTCCACTGC 59.058 50.000 0.00 0.00 35.63 4.40
4138 4582 1.909287 TGCACAAGGCCATGCATGT 60.909 52.632 24.58 4.09 46.63 3.21
4180 4624 1.130054 TCCCAGCCTTGTCTGAAGCT 61.130 55.000 0.00 0.00 36.19 3.74
4299 4748 6.958192 TGGTCTTATTACCTTGTACTTCCTCT 59.042 38.462 0.00 0.00 40.44 3.69
4365 4869 9.373603 ACATTTTTAAGTTTGACCAGGTTTTAC 57.626 29.630 0.00 0.00 0.00 2.01
4397 4901 2.884639 ACCAACATCTACAACACCAAGC 59.115 45.455 0.00 0.00 0.00 4.01
4402 4906 6.597672 CCAACATCTACAACACCAAGCTAATA 59.402 38.462 0.00 0.00 0.00 0.98
4494 5032 7.045416 TGTGACTTAGCACAGTTCTAGAAAAA 58.955 34.615 6.78 0.00 43.35 1.94
4727 5308 4.403453 GCTACAAGAAAAATGCACGTAGG 58.597 43.478 0.00 0.00 0.00 3.18
4827 5408 6.717289 ACACTCAGGCTTAAATTGTATGGTA 58.283 36.000 0.00 0.00 0.00 3.25
4844 5425 6.661377 TGTATGGTATTTACAATGCCAACACT 59.339 34.615 9.93 0.00 37.34 3.55
4882 5463 2.819608 GTTGGCTCCAGATTGCTGTTAA 59.180 45.455 0.00 0.00 40.63 2.01
4922 5506 8.443953 AACTCAGCCTCATACTTTCAAATATC 57.556 34.615 0.00 0.00 0.00 1.63
4984 5568 5.586243 GCTCACTTTTATCTAATGGCAGTGA 59.414 40.000 0.00 0.00 37.44 3.41
5153 5737 6.166045 GCTTTGGAGCGATTGGAACTCAAT 62.166 45.833 0.00 0.00 42.81 2.57
5299 5883 7.470935 TTCACTTTTTCCATGATGATGATGT 57.529 32.000 0.00 0.00 0.00 3.06
5301 5885 7.898918 TCACTTTTTCCATGATGATGATGTTT 58.101 30.769 0.00 0.00 0.00 2.83
5303 5887 8.995220 CACTTTTTCCATGATGATGATGTTTTT 58.005 29.630 0.00 0.00 0.00 1.94
5304 5888 9.211485 ACTTTTTCCATGATGATGATGTTTTTC 57.789 29.630 0.00 0.00 0.00 2.29
5307 5891 8.710835 TTTCCATGATGATGATGTTTTTCATG 57.289 30.769 0.00 0.00 39.91 3.07
5308 5892 7.648039 TCCATGATGATGATGTTTTTCATGA 57.352 32.000 11.23 0.00 41.74 3.07
5309 5893 8.245195 TCCATGATGATGATGTTTTTCATGAT 57.755 30.769 11.23 0.00 41.74 2.45
5310 5894 8.141268 TCCATGATGATGATGTTTTTCATGATG 58.859 33.333 11.23 5.08 41.74 3.07
5311 5895 8.141268 CCATGATGATGATGTTTTTCATGATGA 58.859 33.333 11.47 0.00 41.24 2.92
5312 5896 8.968242 CATGATGATGATGTTTTTCATGATGAC 58.032 33.333 0.00 0.00 41.24 3.06
5313 5897 7.190871 TGATGATGATGTTTTTCATGATGACG 58.809 34.615 0.00 0.00 36.48 4.35
5314 5898 6.740411 TGATGATGTTTTTCATGATGACGA 57.260 33.333 0.00 0.00 36.48 4.20
5315 5899 7.324354 TGATGATGTTTTTCATGATGACGAT 57.676 32.000 0.00 0.00 36.48 3.73
5316 5900 7.190871 TGATGATGTTTTTCATGATGACGATG 58.809 34.615 0.00 0.00 36.48 3.84
5317 5901 6.499234 TGATGTTTTTCATGATGACGATGT 57.501 33.333 0.00 0.00 36.83 3.06
5318 5902 6.545508 TGATGTTTTTCATGATGACGATGTC 58.454 36.000 0.00 0.00 36.83 3.06
5369 5983 5.589452 AGAATCACTGCAGATGAAGGAAATC 59.411 40.000 23.35 11.98 0.00 2.17
5407 6021 2.860735 GCGTTCTTCATTATGCTCTCGT 59.139 45.455 0.00 0.00 0.00 4.18
5511 6147 6.196079 TGTCTATGGACATATGCGTATCTC 57.804 41.667 7.97 0.00 46.19 2.75
5641 6299 0.322456 TGGATGGAAGTTTGCCTCGG 60.322 55.000 0.00 0.00 0.00 4.63
5672 6330 5.992217 GGTATGCGGACTATGATCTTTTCTT 59.008 40.000 0.00 0.00 0.00 2.52
5797 6475 9.781834 TTGTTTAGAGCAATAATAAATTCACGG 57.218 29.630 0.00 0.00 0.00 4.94
5820 6532 3.030291 TGTTGGTTTTTCATCTGCAGGT 58.970 40.909 15.13 2.68 0.00 4.00
5945 6657 3.502211 CACTAAATTCCGCTCCACAAAGT 59.498 43.478 0.00 0.00 0.00 2.66
5986 6698 3.375299 GTCATATTCTTGACAGCACACCC 59.625 47.826 0.00 0.00 44.38 4.61
6061 6779 2.363306 TTGACAGATGCTTTGTGGGT 57.637 45.000 0.00 0.00 0.00 4.51
6113 6834 0.384309 TGCGGCTATCCAGACTTACG 59.616 55.000 0.00 0.00 0.00 3.18
6201 6927 2.479566 TGACTTGCAAGGGAGCTAAG 57.520 50.000 29.18 2.89 34.99 2.18
6299 7031 4.468153 TGTGTCCTTGGTTTTAGGCTTTTT 59.532 37.500 0.00 0.00 32.59 1.94
6340 7072 5.128171 AGGTTGTGTTGAGACTAGTTGTACA 59.872 40.000 0.00 0.00 0.00 2.90
6370 7102 1.080772 GTAGTTTTGCCCCTTGCGC 60.081 57.895 0.00 0.00 45.60 6.09
6377 7109 4.362476 GCCCCTTGCGCTGGTTTG 62.362 66.667 9.73 3.33 0.00 2.93
6430 7162 6.365518 GTGTCTGGTTTGGTTTCGTTTTAAAA 59.634 34.615 0.00 0.00 0.00 1.52
6431 7163 7.063662 GTGTCTGGTTTGGTTTCGTTTTAAAAT 59.936 33.333 3.52 0.00 0.00 1.82
6434 7166 5.519206 TGGTTTGGTTTCGTTTTAAAATCCG 59.481 36.000 3.52 4.35 0.00 4.18
6443 7175 5.764131 TCGTTTTAAAATCCGCTGTTGATT 58.236 33.333 3.52 0.00 33.97 2.57
6475 7207 1.844771 GCACGCACACAGATCAAGCA 61.845 55.000 0.00 0.00 0.00 3.91
6489 7221 3.788227 TCAAGCATGTACCCTGAGTTT 57.212 42.857 0.00 0.00 0.00 2.66
6490 7222 3.411446 TCAAGCATGTACCCTGAGTTTG 58.589 45.455 0.00 0.00 0.00 2.93
6502 7234 2.356535 CCTGAGTTTGGGGAGGAATGAG 60.357 54.545 0.00 0.00 0.00 2.90
6504 7236 2.986019 TGAGTTTGGGGAGGAATGAGAA 59.014 45.455 0.00 0.00 0.00 2.87
6517 7249 1.906990 ATGAGAATATGCAGCAGGCC 58.093 50.000 0.00 0.00 43.89 5.19
6524 7256 0.251297 TATGCAGCAGGCCAAACACT 60.251 50.000 5.01 0.00 43.89 3.55
6559 7291 8.798153 CCTCAGTCAAATAAATAAATGTTTCGC 58.202 33.333 0.00 0.00 0.00 4.70
6560 7292 9.559958 CTCAGTCAAATAAATAAATGTTTCGCT 57.440 29.630 0.00 0.00 0.00 4.93
6583 7388 6.543831 GCTCTGAACATAATTCCAGTGGTTAT 59.456 38.462 9.54 4.13 0.00 1.89
6606 7411 3.600388 GAGATACTTAATCATGCGGGGG 58.400 50.000 0.00 0.00 37.03 5.40
6648 7453 6.539826 TGATTTCTGTAGTGTTCATGCATAGG 59.460 38.462 0.00 0.00 0.00 2.57
6666 7471 0.888619 GGCAAACTTAGGGCAACTCC 59.111 55.000 0.00 0.00 0.00 3.85
6667 7472 1.616159 GCAAACTTAGGGCAACTCCA 58.384 50.000 0.00 0.00 36.21 3.86
6668 7473 1.960689 GCAAACTTAGGGCAACTCCAA 59.039 47.619 0.00 0.00 36.21 3.53
6669 7474 2.288213 GCAAACTTAGGGCAACTCCAAC 60.288 50.000 0.00 0.00 36.21 3.77
6670 7475 2.955660 CAAACTTAGGGCAACTCCAACA 59.044 45.455 0.00 0.00 36.21 3.33
6671 7476 2.568623 ACTTAGGGCAACTCCAACAG 57.431 50.000 0.00 0.00 36.21 3.16
6677 7482 1.363807 GCAACTCCAACAGGCCAAC 59.636 57.895 5.01 0.00 0.00 3.77
6685 7490 0.031857 CAACAGGCCAACGCATTTCA 59.968 50.000 5.01 0.00 36.38 2.69
6703 7508 0.740868 CATCCGACTGCATCCGTGTT 60.741 55.000 7.04 0.00 0.00 3.32
6783 7588 3.448093 TTGCTGTCCATACCCATTTCA 57.552 42.857 0.00 0.00 0.00 2.69
6817 7629 3.369381 CTGGGTTAGCCACGAGATG 57.631 57.895 0.00 0.00 36.17 2.90
6838 7671 4.838152 CAGCCCACGCGCATAGGT 62.838 66.667 5.73 0.00 41.18 3.08
6859 7692 1.831580 GCCACAGCCTCATTTTCTCT 58.168 50.000 0.00 0.00 0.00 3.10
6860 7693 2.165998 GCCACAGCCTCATTTTCTCTT 58.834 47.619 0.00 0.00 0.00 2.85
6900 7733 8.928270 TGTTTCCTATTTTCGTTTTTGCTTTA 57.072 26.923 0.00 0.00 0.00 1.85
6986 7822 8.999220 AAAAACATTTGAAAAATGTTGCCAAT 57.001 23.077 24.22 11.09 46.62 3.16
6987 7823 8.631676 AAAACATTTGAAAAATGTTGCCAATC 57.368 26.923 24.22 0.00 46.62 2.67
6988 7824 6.939132 ACATTTGAAAAATGTTGCCAATCA 57.061 29.167 11.58 0.00 37.58 2.57
6989 7825 7.513371 ACATTTGAAAAATGTTGCCAATCAT 57.487 28.000 11.58 0.00 37.58 2.45
6990 7826 7.942990 ACATTTGAAAAATGTTGCCAATCATT 58.057 26.923 11.58 1.14 37.58 2.57
6991 7827 8.414778 ACATTTGAAAAATGTTGCCAATCATTT 58.585 25.926 11.58 10.29 43.26 2.32
6992 7828 8.695284 CATTTGAAAAATGTTGCCAATCATTTG 58.305 29.630 14.41 3.23 41.44 2.32
6993 7829 7.563888 TTGAAAAATGTTGCCAATCATTTGA 57.436 28.000 14.41 4.62 41.44 2.69
6994 7830 7.563888 TGAAAAATGTTGCCAATCATTTGAA 57.436 28.000 14.41 5.52 41.44 2.69
6995 7831 7.993101 TGAAAAATGTTGCCAATCATTTGAAA 58.007 26.923 14.41 5.29 41.44 2.69
6996 7832 8.464404 TGAAAAATGTTGCCAATCATTTGAAAA 58.536 25.926 14.41 4.14 41.44 2.29
6997 7833 9.298774 GAAAAATGTTGCCAATCATTTGAAAAA 57.701 25.926 14.41 0.00 41.44 1.94
6998 7834 9.819267 AAAAATGTTGCCAATCATTTGAAAAAT 57.181 22.222 14.41 1.62 41.44 1.82
7120 7957 7.647715 AGCATTTGAACACTGTTAAATGTGTAC 59.352 33.333 21.94 13.76 45.33 2.90
7155 7992 8.667076 TGACCATGTACTAGAAAATGATGATG 57.333 34.615 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.234546 TGAACGATAGCTTTTTCCTTAAACATC 58.765 33.333 0.00 0.00 42.67 3.06
3 4 7.227910 ACTGAACGATAGCTTTTTCCTTAAACA 59.772 33.333 0.00 0.00 42.67 2.83
4 5 7.582352 ACTGAACGATAGCTTTTTCCTTAAAC 58.418 34.615 0.00 0.00 42.67 2.01
5 6 7.359765 CGACTGAACGATAGCTTTTTCCTTAAA 60.360 37.037 0.00 0.00 42.67 1.52
6 7 6.090358 CGACTGAACGATAGCTTTTTCCTTAA 59.910 38.462 0.00 0.00 42.67 1.85
7 8 5.575606 CGACTGAACGATAGCTTTTTCCTTA 59.424 40.000 0.00 0.00 42.67 2.69
8 9 4.389077 CGACTGAACGATAGCTTTTTCCTT 59.611 41.667 0.00 0.00 42.67 3.36
9 10 3.927142 CGACTGAACGATAGCTTTTTCCT 59.073 43.478 0.00 0.00 42.67 3.36
10 11 3.924686 TCGACTGAACGATAGCTTTTTCC 59.075 43.478 0.00 0.00 37.37 3.13
11 12 4.857588 TCTCGACTGAACGATAGCTTTTTC 59.142 41.667 0.00 0.00 41.39 2.29
12 13 4.806330 TCTCGACTGAACGATAGCTTTTT 58.194 39.130 0.00 0.00 41.39 1.94
13 14 4.436242 TCTCGACTGAACGATAGCTTTT 57.564 40.909 0.00 0.00 41.39 2.27
14 15 4.167268 GTTCTCGACTGAACGATAGCTTT 58.833 43.478 0.00 0.00 41.39 3.51
15 16 3.427773 GGTTCTCGACTGAACGATAGCTT 60.428 47.826 10.40 0.00 45.11 3.74
16 17 2.097791 GGTTCTCGACTGAACGATAGCT 59.902 50.000 10.40 0.00 45.11 3.32
17 18 2.097791 AGGTTCTCGACTGAACGATAGC 59.902 50.000 10.40 0.00 45.11 2.97
18 19 3.242804 GGAGGTTCTCGACTGAACGATAG 60.243 52.174 10.40 0.00 45.11 2.08
19 20 2.681848 GGAGGTTCTCGACTGAACGATA 59.318 50.000 10.40 0.00 45.11 2.92
20 21 1.473278 GGAGGTTCTCGACTGAACGAT 59.527 52.381 10.40 3.43 45.11 3.73
21 22 0.879765 GGAGGTTCTCGACTGAACGA 59.120 55.000 10.40 0.00 45.11 3.85
22 23 0.454620 CGGAGGTTCTCGACTGAACG 60.455 60.000 10.40 0.00 45.11 3.95
23 24 0.733223 GCGGAGGTTCTCGACTGAAC 60.733 60.000 8.62 8.62 43.88 3.18
24 25 1.585006 GCGGAGGTTCTCGACTGAA 59.415 57.895 0.00 0.00 0.00 3.02
25 26 2.341101 GGCGGAGGTTCTCGACTGA 61.341 63.158 0.00 0.00 0.00 3.41
26 27 1.949847 ATGGCGGAGGTTCTCGACTG 61.950 60.000 0.00 0.00 35.11 3.51
27 28 1.668101 GATGGCGGAGGTTCTCGACT 61.668 60.000 0.00 0.00 35.11 4.18
28 29 1.227002 GATGGCGGAGGTTCTCGAC 60.227 63.158 0.00 0.00 34.54 4.20
29 30 0.970937 AAGATGGCGGAGGTTCTCGA 60.971 55.000 0.00 0.00 0.00 4.04
59 60 2.890474 GCCCACATAGGACACGCG 60.890 66.667 3.53 3.53 41.22 6.01
83 84 8.845227 CCGATCATTGTAGAGATATATAGTGCT 58.155 37.037 0.00 0.00 0.00 4.40
90 91 5.190677 TCCGCCGATCATTGTAGAGATATA 58.809 41.667 0.00 0.00 0.00 0.86
91 92 4.017126 TCCGCCGATCATTGTAGAGATAT 58.983 43.478 0.00 0.00 0.00 1.63
92 93 3.418047 TCCGCCGATCATTGTAGAGATA 58.582 45.455 0.00 0.00 0.00 1.98
93 94 2.239400 TCCGCCGATCATTGTAGAGAT 58.761 47.619 0.00 0.00 0.00 2.75
94 95 1.687563 TCCGCCGATCATTGTAGAGA 58.312 50.000 0.00 0.00 0.00 3.10
109 110 3.483574 CGGCATCGATTTGTTATATCCGC 60.484 47.826 0.00 0.00 39.00 5.54
115 116 3.065019 GCAACGGCATCGATTTGTTAT 57.935 42.857 0.00 0.00 40.72 1.89
155 156 4.389576 CAACACGGAAGCAGCGGC 62.390 66.667 0.00 0.00 41.61 6.53
156 157 3.726517 CCAACACGGAAGCAGCGG 61.727 66.667 0.00 0.00 36.56 5.52
157 158 3.726517 CCCAACACGGAAGCAGCG 61.727 66.667 0.00 0.00 36.56 5.18
158 159 4.043200 GCCCAACACGGAAGCAGC 62.043 66.667 0.00 0.00 36.56 5.25
159 160 2.281761 AGCCCAACACGGAAGCAG 60.282 61.111 0.00 0.00 36.56 4.24
160 161 2.594303 CAGCCCAACACGGAAGCA 60.594 61.111 0.00 0.00 36.56 3.91
161 162 2.594592 ACAGCCCAACACGGAAGC 60.595 61.111 0.00 0.00 36.56 3.86
162 163 1.071471 AGACAGCCCAACACGGAAG 59.929 57.895 0.00 0.00 36.56 3.46
163 164 1.227823 CAGACAGCCCAACACGGAA 60.228 57.895 0.00 0.00 36.56 4.30
164 165 2.425592 CAGACAGCCCAACACGGA 59.574 61.111 0.00 0.00 36.56 4.69
165 166 3.357079 GCAGACAGCCCAACACGG 61.357 66.667 0.00 0.00 37.23 4.94
166 167 3.716006 CGCAGACAGCCCAACACG 61.716 66.667 0.00 0.00 41.38 4.49
167 168 4.030452 GCGCAGACAGCCCAACAC 62.030 66.667 0.30 0.00 41.38 3.32
168 169 4.254709 AGCGCAGACAGCCCAACA 62.255 61.111 11.47 0.00 41.38 3.33
169 170 3.426568 GAGCGCAGACAGCCCAAC 61.427 66.667 11.47 0.00 41.38 3.77
175 176 3.108289 CACCACGAGCGCAGACAG 61.108 66.667 11.47 0.00 0.00 3.51
182 183 4.700365 TCGAGTGCACCACGAGCG 62.700 66.667 25.32 15.05 39.64 5.03
183 184 2.807045 CTCGAGTGCACCACGAGC 60.807 66.667 33.85 12.20 44.67 5.03
185 186 3.268965 GAGCTCGAGTGCACCACGA 62.269 63.158 26.56 26.56 39.64 4.35
186 187 2.807045 GAGCTCGAGTGCACCACG 60.807 66.667 22.25 22.25 39.64 4.94
187 188 2.807045 CGAGCTCGAGTGCACCAC 60.807 66.667 32.06 7.42 43.02 4.16
188 189 4.056125 CCGAGCTCGAGTGCACCA 62.056 66.667 36.59 0.00 43.02 4.17
190 191 4.724602 TGCCGAGCTCGAGTGCAC 62.725 66.667 36.59 17.76 43.02 4.57
191 192 4.724602 GTGCCGAGCTCGAGTGCA 62.725 66.667 36.59 31.41 43.02 4.57
259 260 0.901124 AGATCCAGTGAGGTGAGCAC 59.099 55.000 0.00 0.00 39.02 4.40
265 266 2.030027 TCAACCAGATCCAGTGAGGT 57.970 50.000 0.00 0.00 39.02 3.85
277 278 0.595095 GCAGGAGCTTGTTCAACCAG 59.405 55.000 0.00 0.00 37.91 4.00
280 281 1.405105 TGTTGCAGGAGCTTGTTCAAC 59.595 47.619 12.79 12.79 42.74 3.18
325 326 1.511305 CGTTAGAGGAGCTTGGCGA 59.489 57.895 0.00 0.00 0.00 5.54
336 337 1.519455 CTTGCCGCCTCCGTTAGAG 60.519 63.158 0.00 0.00 42.83 2.43
338 339 2.511600 CCTTGCCGCCTCCGTTAG 60.512 66.667 0.00 0.00 0.00 2.34
350 351 3.818787 CCGCCTGTGATGCCTTGC 61.819 66.667 0.00 0.00 0.00 4.01
352 353 0.827507 AAAACCGCCTGTGATGCCTT 60.828 50.000 0.00 0.00 0.00 4.35
363 364 1.215014 GCTGCAGAAACAAAACCGCC 61.215 55.000 20.43 0.00 0.00 6.13
378 379 0.033781 TGAAACATGCCCTTTGCTGC 59.966 50.000 0.00 0.00 42.00 5.25
402 403 0.662619 TGCAACGAAGAGGCTTGTTG 59.337 50.000 14.52 14.52 43.40 3.33
477 478 8.883789 TGTTACAGAAGTTTTTCGTAACAAAG 57.116 30.769 21.20 0.00 45.93 2.77
484 485 6.730960 TGTCTTGTTACAGAAGTTTTTCGT 57.269 33.333 0.00 0.00 38.38 3.85
492 493 7.132694 TGCAACATATGTCTTGTTACAGAAG 57.867 36.000 9.23 0.00 35.61 2.85
534 535 6.364435 GCAGAAAATTTCCACAACAAGAGATC 59.636 38.462 1.57 0.00 0.00 2.75
537 538 5.350633 TGCAGAAAATTTCCACAACAAGAG 58.649 37.500 1.57 0.00 0.00 2.85
540 541 5.240891 TGTTGCAGAAAATTTCCACAACAA 58.759 33.333 27.27 17.47 45.25 2.83
546 547 4.502950 GGGTGATGTTGCAGAAAATTTCCA 60.503 41.667 1.57 0.00 0.00 3.53
568 569 1.206849 ACCACCACTTTTGCAACAAGG 59.793 47.619 18.96 12.94 0.00 3.61
584 585 3.660111 GCCCACGTGAGCAACCAC 61.660 66.667 17.95 0.00 0.00 4.16
608 609 2.627945 TGGACATGTCAAATAGCCGTC 58.372 47.619 26.47 6.35 0.00 4.79
611 612 3.554934 TGGATGGACATGTCAAATAGCC 58.445 45.455 26.47 19.80 0.00 3.93
731 732 5.941555 TTTAAGTTGCCCTTCAGGAAAAA 57.058 34.783 0.00 0.00 33.58 1.94
732 733 5.941555 TTTTAAGTTGCCCTTCAGGAAAA 57.058 34.783 0.00 0.00 33.58 2.29
733 734 5.659079 TCTTTTTAAGTTGCCCTTCAGGAAA 59.341 36.000 0.00 0.00 38.24 3.13
734 735 5.205056 TCTTTTTAAGTTGCCCTTCAGGAA 58.795 37.500 0.00 0.00 38.24 3.36
774 775 1.557269 AAACTCTCTCGCATGGGCCT 61.557 55.000 4.53 0.00 36.38 5.19
805 806 2.598394 TGACTGGGCAGGCAAAGC 60.598 61.111 0.00 0.00 44.93 3.51
820 821 1.700368 CTCTCCTCCTGTCCCCTGA 59.300 63.158 0.00 0.00 0.00 3.86
821 822 1.382420 CCTCTCCTCCTGTCCCCTG 60.382 68.421 0.00 0.00 0.00 4.45
822 823 3.114390 CCTCTCCTCCTGTCCCCT 58.886 66.667 0.00 0.00 0.00 4.79
826 827 3.151022 CGGGCCTCTCCTCCTGTC 61.151 72.222 0.84 0.00 34.39 3.51
827 828 4.787280 CCGGGCCTCTCCTCCTGT 62.787 72.222 0.84 0.00 34.39 4.00
933 976 1.303643 CTTTTTCCGCCCTGCCTCT 60.304 57.895 0.00 0.00 0.00 3.69
941 984 1.557099 AAATCCCCTCTTTTTCCGCC 58.443 50.000 0.00 0.00 0.00 6.13
946 989 3.572642 ACACGGAAAATCCCCTCTTTTT 58.427 40.909 0.00 0.00 31.13 1.94
976 1019 2.659897 GCGGAGTGATAGCAGCCG 60.660 66.667 15.64 15.64 42.71 5.52
987 1031 1.067212 GACATCATAAGACGGCGGAGT 59.933 52.381 13.24 0.00 0.00 3.85
1012 1056 2.026879 GCGACGAGGATCCTGCTC 59.973 66.667 22.02 11.97 0.00 4.26
1076 1120 6.016777 CCAGACAGGGCATATGAAGATAAAAC 60.017 42.308 6.97 0.00 0.00 2.43
1110 1154 5.346181 AGTAGCCTGAATTTGAGACCTAC 57.654 43.478 5.93 5.93 0.00 3.18
1134 1178 3.244112 GCATAAGGCGGTGGAGTAATACT 60.244 47.826 0.00 0.00 0.00 2.12
1135 1179 3.064931 GCATAAGGCGGTGGAGTAATAC 58.935 50.000 0.00 0.00 0.00 1.89
1136 1180 3.396260 GCATAAGGCGGTGGAGTAATA 57.604 47.619 0.00 0.00 0.00 0.98
1137 1181 2.256117 GCATAAGGCGGTGGAGTAAT 57.744 50.000 0.00 0.00 0.00 1.89
1161 1205 4.016572 ACTGGAACATAAAGGGGGCTAATT 60.017 41.667 0.00 0.00 38.20 1.40
1204 1248 1.218316 CACGCCTCCCTACCAAGTC 59.782 63.158 0.00 0.00 0.00 3.01
1516 1567 0.391130 ATCCACTTGCGAGCGCTTTA 60.391 50.000 13.26 0.00 42.51 1.85
1590 1641 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
1591 1642 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1592 1643 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1593 1644 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
1594 1645 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
1595 1646 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
1596 1647 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1597 1648 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
1598 1649 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
1599 1650 5.066893 AGTTAGATGTACACTTATTCGCGGA 59.933 40.000 6.13 0.00 0.00 5.54
1600 1651 5.279384 AGTTAGATGTACACTTATTCGCGG 58.721 41.667 6.13 0.00 0.00 6.46
1601 1652 6.807708 AAGTTAGATGTACACTTATTCGCG 57.192 37.500 0.00 0.00 0.00 5.87
1602 1653 8.440833 ACAAAAGTTAGATGTACACTTATTCGC 58.559 33.333 0.00 0.00 30.37 4.70
1709 1760 9.878599 CACTAGATTCGTTTTGAAATGTACTTT 57.121 29.630 0.00 0.00 40.71 2.66
1710 1761 9.268268 TCACTAGATTCGTTTTGAAATGTACTT 57.732 29.630 0.00 0.00 40.71 2.24
1711 1762 8.827177 TCACTAGATTCGTTTTGAAATGTACT 57.173 30.769 0.00 0.00 40.71 2.73
1714 1765 9.436957 AGTATCACTAGATTCGTTTTGAAATGT 57.563 29.630 0.00 0.00 40.71 2.71
1722 1773 9.886132 ACCAAATTAGTATCACTAGATTCGTTT 57.114 29.630 0.00 0.00 35.67 3.60
1723 1774 9.314321 CACCAAATTAGTATCACTAGATTCGTT 57.686 33.333 0.00 0.00 35.67 3.85
1724 1775 7.438459 GCACCAAATTAGTATCACTAGATTCGT 59.562 37.037 0.00 0.00 35.67 3.85
1725 1776 7.095607 GGCACCAAATTAGTATCACTAGATTCG 60.096 40.741 0.00 0.00 35.67 3.34
1726 1777 7.715249 TGGCACCAAATTAGTATCACTAGATTC 59.285 37.037 0.00 0.00 35.67 2.52
1727 1778 7.573710 TGGCACCAAATTAGTATCACTAGATT 58.426 34.615 0.00 0.00 35.67 2.40
1728 1779 7.136822 TGGCACCAAATTAGTATCACTAGAT 57.863 36.000 0.00 0.00 38.29 1.98
1729 1780 6.553953 TGGCACCAAATTAGTATCACTAGA 57.446 37.500 0.00 0.00 31.47 2.43
1730 1781 8.902540 TTATGGCACCAAATTAGTATCACTAG 57.097 34.615 0.00 0.00 31.47 2.57
1731 1782 9.860650 ATTTATGGCACCAAATTAGTATCACTA 57.139 29.630 0.00 0.00 0.00 2.74
1732 1783 8.632679 CATTTATGGCACCAAATTAGTATCACT 58.367 33.333 6.24 0.00 0.00 3.41
1733 1784 7.382218 GCATTTATGGCACCAAATTAGTATCAC 59.618 37.037 6.24 0.00 0.00 3.06
1734 1785 7.287466 AGCATTTATGGCACCAAATTAGTATCA 59.713 33.333 6.24 0.00 0.00 2.15
1735 1786 7.661040 AGCATTTATGGCACCAAATTAGTATC 58.339 34.615 6.24 0.00 0.00 2.24
1736 1787 7.601705 AGCATTTATGGCACCAAATTAGTAT 57.398 32.000 6.24 0.00 0.00 2.12
1737 1788 7.416964 AAGCATTTATGGCACCAAATTAGTA 57.583 32.000 6.24 0.00 0.00 1.82
1738 1789 5.937975 AGCATTTATGGCACCAAATTAGT 57.062 34.783 6.24 0.00 0.00 2.24
1739 1790 7.614124 AAAAGCATTTATGGCACCAAATTAG 57.386 32.000 6.24 0.00 37.28 1.73
1740 1791 8.317679 AGTAAAAGCATTTATGGCACCAAATTA 58.682 29.630 6.24 0.00 37.28 1.40
1741 1792 7.167535 AGTAAAAGCATTTATGGCACCAAATT 58.832 30.769 6.24 0.00 37.28 1.82
1742 1793 6.710278 AGTAAAAGCATTTATGGCACCAAAT 58.290 32.000 0.00 0.00 37.28 2.32
1743 1794 6.014669 AGAGTAAAAGCATTTATGGCACCAAA 60.015 34.615 0.00 0.00 37.28 3.28
1744 1795 5.480073 AGAGTAAAAGCATTTATGGCACCAA 59.520 36.000 0.00 0.00 37.28 3.67
1745 1796 5.016173 AGAGTAAAAGCATTTATGGCACCA 58.984 37.500 0.00 0.00 37.28 4.17
1746 1797 5.582689 AGAGTAAAAGCATTTATGGCACC 57.417 39.130 0.00 0.00 37.28 5.01
1747 1798 6.531594 GGAAAGAGTAAAAGCATTTATGGCAC 59.468 38.462 0.00 0.00 37.28 5.01
1748 1799 6.437162 AGGAAAGAGTAAAAGCATTTATGGCA 59.563 34.615 0.00 0.00 37.28 4.92
1749 1800 6.867550 AGGAAAGAGTAAAAGCATTTATGGC 58.132 36.000 0.00 0.00 37.28 4.40
1750 1801 9.396022 TCTAGGAAAGAGTAAAAGCATTTATGG 57.604 33.333 0.00 0.00 37.28 2.74
1754 1805 8.797438 CCTTTCTAGGAAAGAGTAAAAGCATTT 58.203 33.333 18.11 0.00 45.05 2.32
1755 1806 7.945109 ACCTTTCTAGGAAAGAGTAAAAGCATT 59.055 33.333 18.11 0.00 45.05 3.56
1756 1807 7.391833 CACCTTTCTAGGAAAGAGTAAAAGCAT 59.608 37.037 18.11 0.00 45.05 3.79
1757 1808 6.710744 CACCTTTCTAGGAAAGAGTAAAAGCA 59.289 38.462 18.11 0.00 45.05 3.91
1758 1809 6.149640 CCACCTTTCTAGGAAAGAGTAAAAGC 59.850 42.308 18.11 0.00 45.05 3.51
1759 1810 7.225011 ACCACCTTTCTAGGAAAGAGTAAAAG 58.775 38.462 18.11 5.51 45.05 2.27
1760 1811 7.145474 ACCACCTTTCTAGGAAAGAGTAAAA 57.855 36.000 18.11 0.00 45.05 1.52
1761 1812 6.328148 TGACCACCTTTCTAGGAAAGAGTAAA 59.672 38.462 18.11 5.62 45.05 2.01
1762 1813 5.842328 TGACCACCTTTCTAGGAAAGAGTAA 59.158 40.000 18.11 6.30 45.05 2.24
1763 1814 5.399991 TGACCACCTTTCTAGGAAAGAGTA 58.600 41.667 18.11 1.76 45.05 2.59
1764 1815 4.232091 TGACCACCTTTCTAGGAAAGAGT 58.768 43.478 18.11 12.94 45.05 3.24
1765 1816 4.891992 TGACCACCTTTCTAGGAAAGAG 57.108 45.455 18.11 11.90 45.05 2.85
1766 1817 5.132144 ACTTTGACCACCTTTCTAGGAAAGA 59.868 40.000 18.11 0.00 45.05 2.52
1767 1818 5.377478 ACTTTGACCACCTTTCTAGGAAAG 58.623 41.667 11.68 11.68 45.05 2.62
1768 1819 5.382664 ACTTTGACCACCTTTCTAGGAAA 57.617 39.130 0.00 0.00 45.05 3.13
1769 1820 6.697641 ATACTTTGACCACCTTTCTAGGAA 57.302 37.500 0.00 0.00 45.05 3.36
1770 1821 6.697641 AATACTTTGACCACCTTTCTAGGA 57.302 37.500 0.00 0.00 45.05 2.94
1773 1824 9.856162 AGTTTTAATACTTTGACCACCTTTCTA 57.144 29.630 0.00 0.00 0.00 2.10
1774 1825 8.762481 AGTTTTAATACTTTGACCACCTTTCT 57.238 30.769 0.00 0.00 0.00 2.52
1775 1826 9.811995 AAAGTTTTAATACTTTGACCACCTTTC 57.188 29.630 19.28 0.00 44.42 2.62
1794 1845 9.788960 CTAGCTTTTGTCTTAAGTCAAAGTTTT 57.211 29.630 21.47 13.93 35.29 2.43
1795 1846 9.174166 TCTAGCTTTTGTCTTAAGTCAAAGTTT 57.826 29.630 21.47 15.16 35.29 2.66
1796 1847 8.732746 TCTAGCTTTTGTCTTAAGTCAAAGTT 57.267 30.769 21.47 17.02 35.29 2.66
1797 1848 8.778358 CATCTAGCTTTTGTCTTAAGTCAAAGT 58.222 33.333 21.47 15.13 35.29 2.66
1798 1849 8.778358 ACATCTAGCTTTTGTCTTAAGTCAAAG 58.222 33.333 21.47 17.68 35.29 2.77
1799 1850 8.677148 ACATCTAGCTTTTGTCTTAAGTCAAA 57.323 30.769 19.60 19.60 32.81 2.69
1800 1851 9.204570 GTACATCTAGCTTTTGTCTTAAGTCAA 57.795 33.333 10.54 10.54 0.00 3.18
1801 1852 8.364894 TGTACATCTAGCTTTTGTCTTAAGTCA 58.635 33.333 1.63 0.00 0.00 3.41
1802 1853 8.648968 GTGTACATCTAGCTTTTGTCTTAAGTC 58.351 37.037 0.00 0.00 0.00 3.01
1803 1854 8.368668 AGTGTACATCTAGCTTTTGTCTTAAGT 58.631 33.333 0.00 0.00 0.00 2.24
1804 1855 8.764524 AGTGTACATCTAGCTTTTGTCTTAAG 57.235 34.615 0.00 0.00 0.00 1.85
1807 1858 9.726438 AATAAGTGTACATCTAGCTTTTGTCTT 57.274 29.630 0.00 0.00 0.00 3.01
1808 1859 9.372369 GAATAAGTGTACATCTAGCTTTTGTCT 57.628 33.333 0.00 0.00 0.00 3.41
1809 1860 8.321716 CGAATAAGTGTACATCTAGCTTTTGTC 58.678 37.037 0.00 0.00 0.00 3.18
1810 1861 7.201530 GCGAATAAGTGTACATCTAGCTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
1811 1862 7.119997 GCGAATAAGTGTACATCTAGCTTTTG 58.880 38.462 0.00 0.00 0.00 2.44
1812 1863 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
1813 1864 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
1814 1865 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
1815 1866 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
1816 1867 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
1817 1868 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
1818 1869 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
1819 1870 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
1820 1871 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
1821 1872 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
1822 1873 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
1823 1874 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1824 1875 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1825 1876 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1826 1877 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1827 1878 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1828 1879 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1829 1880 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1830 1881 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1831 1882 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
1832 1883 2.898920 ATACTCCCTCCGTCCGCGAA 62.899 60.000 8.23 0.00 41.33 4.70
1833 1884 3.411114 ATACTCCCTCCGTCCGCGA 62.411 63.158 8.23 0.00 41.33 5.87
1834 1885 2.905880 ATACTCCCTCCGTCCGCG 60.906 66.667 0.00 0.00 37.95 6.46
1835 1886 2.073037 GACATACTCCCTCCGTCCGC 62.073 65.000 0.00 0.00 0.00 5.54
1836 1887 0.750546 TGACATACTCCCTCCGTCCG 60.751 60.000 0.00 0.00 0.00 4.79
1837 1888 1.409427 CTTGACATACTCCCTCCGTCC 59.591 57.143 0.00 0.00 0.00 4.79
1838 1889 2.376109 TCTTGACATACTCCCTCCGTC 58.624 52.381 0.00 0.00 0.00 4.79
1839 1890 2.526888 TCTTGACATACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
1840 1891 3.522553 GTTTCTTGACATACTCCCTCCG 58.477 50.000 0.00 0.00 0.00 4.63
1841 1892 3.522553 CGTTTCTTGACATACTCCCTCC 58.477 50.000 0.00 0.00 0.00 4.30
1842 1893 2.930682 GCGTTTCTTGACATACTCCCTC 59.069 50.000 0.00 0.00 0.00 4.30
1843 1894 2.567615 AGCGTTTCTTGACATACTCCCT 59.432 45.455 0.00 0.00 0.00 4.20
1844 1895 2.673368 CAGCGTTTCTTGACATACTCCC 59.327 50.000 0.00 0.00 0.00 4.30
1845 1896 3.585862 TCAGCGTTTCTTGACATACTCC 58.414 45.455 0.00 0.00 0.00 3.85
1846 1897 6.506513 CGTTATCAGCGTTTCTTGACATACTC 60.507 42.308 0.00 0.00 0.00 2.59
1847 1898 5.288712 CGTTATCAGCGTTTCTTGACATACT 59.711 40.000 0.00 0.00 0.00 2.12
1898 1949 9.259832 TCATACATTCAGGTAGCATAGTGATAT 57.740 33.333 0.00 0.00 0.00 1.63
1899 1950 8.650143 TCATACATTCAGGTAGCATAGTGATA 57.350 34.615 0.00 0.00 0.00 2.15
1900 1951 7.234371 ACTCATACATTCAGGTAGCATAGTGAT 59.766 37.037 0.00 0.00 0.00 3.06
1901 1952 6.551227 ACTCATACATTCAGGTAGCATAGTGA 59.449 38.462 0.00 0.00 0.00 3.41
1977 2036 6.222389 TGGAGAATTAAAAGTGCAACCATTG 58.778 36.000 0.00 0.00 37.80 2.82
2007 2091 9.442047 AGGAATCAGATACTAGAAACAAAGTTG 57.558 33.333 0.00 0.00 0.00 3.16
2107 2225 5.526010 GTGTTTTCACCGTAGTAATCAGG 57.474 43.478 0.00 0.00 44.31 3.86
2120 2238 7.200474 GCAATGGCTTCAAAGGTGTTTTCAC 62.200 44.000 0.00 0.00 42.59 3.18
2122 2240 3.248363 GCAATGGCTTCAAAGGTGTTTTC 59.752 43.478 0.00 0.00 36.96 2.29
2126 2257 1.342174 CTGCAATGGCTTCAAAGGTGT 59.658 47.619 0.00 0.00 41.91 4.16
2243 2375 1.282157 GGTGGAATCACTGGGTAGCTT 59.718 52.381 0.00 0.00 43.17 3.74
2474 2669 3.938334 TGCATTGCAGCGAAGTTTAGATA 59.062 39.130 7.38 0.00 37.31 1.98
2658 2891 1.625818 ACGAAGCCTTTGAGGAGTCAT 59.374 47.619 0.00 0.00 37.67 3.06
2714 2947 2.367894 CCATCTCTGAAGCTGCTCCATA 59.632 50.000 1.00 0.00 0.00 2.74
2761 2994 4.762289 AGGCGGAGATACAAGAAAAGAT 57.238 40.909 0.00 0.00 0.00 2.40
2815 3048 2.969628 ACCTTCCTCTACATCTTGCG 57.030 50.000 0.00 0.00 0.00 4.85
2865 3098 3.193263 CATCAGACACTAGTGCATGACC 58.807 50.000 24.94 9.35 33.21 4.02
2872 3105 4.652421 AGATCTGCATCAGACACTAGTG 57.348 45.455 21.44 21.44 43.63 2.74
2949 3183 2.600867 GAGGCATCGTCTTTCTTCTTCG 59.399 50.000 0.00 0.00 0.00 3.79
2956 3190 1.933247 CAGAGGAGGCATCGTCTTTC 58.067 55.000 19.96 0.00 46.01 2.62
2957 3191 0.107945 GCAGAGGAGGCATCGTCTTT 60.108 55.000 19.96 0.00 46.01 2.52
3079 3317 2.862674 TAATGAACGCACTCCGCCCC 62.863 60.000 0.00 0.00 41.76 5.80
3115 3353 7.164826 CAGAACACTCTTGACGAAAGAAAATTG 59.835 37.037 6.74 5.01 44.38 2.32
3258 3681 5.246883 AGGGAAATCAAGTCCTTCAATTTGG 59.753 40.000 0.00 0.00 35.33 3.28
3266 3689 6.241645 CAAGAACTAGGGAAATCAAGTCCTT 58.758 40.000 0.00 0.00 35.33 3.36
3329 3752 3.766545 TCCTGTGCATAAAAAGCCTTCT 58.233 40.909 0.00 0.00 0.00 2.85
3330 3753 4.519540 TTCCTGTGCATAAAAAGCCTTC 57.480 40.909 0.00 0.00 0.00 3.46
3334 3757 4.021981 AGACCTTTCCTGTGCATAAAAAGC 60.022 41.667 10.66 0.00 0.00 3.51
3341 3764 1.980765 TCTCAGACCTTTCCTGTGCAT 59.019 47.619 0.00 0.00 33.57 3.96
3349 3772 1.645710 TCCCCTGTCTCAGACCTTTC 58.354 55.000 1.24 0.00 32.44 2.62
3376 3799 4.286808 AGCAAGAATAAAAAGCATTGGGGT 59.713 37.500 0.00 0.00 0.00 4.95
3444 3867 2.259917 CCAGGGAAAAGAAGGCCATTT 58.740 47.619 5.01 0.00 0.00 2.32
3455 3878 2.892852 CTCTTTGCATGACCAGGGAAAA 59.107 45.455 0.00 0.00 32.48 2.29
3483 3906 3.589288 AGCATAAAAACTGGTCCTCCTCT 59.411 43.478 0.00 0.00 34.23 3.69
3486 3909 3.686016 TCAGCATAAAAACTGGTCCTCC 58.314 45.455 0.00 0.00 34.57 4.30
3514 3937 4.941263 TCAACAGGATTTATAAACAGCGCT 59.059 37.500 2.64 2.64 0.00 5.92
3546 3969 5.696030 AGCCCCATAGAAATTTAGAAGACC 58.304 41.667 0.00 0.00 0.00 3.85
3567 3990 0.036022 ACTTTCAGCCCAGACAGAGC 59.964 55.000 0.00 0.00 0.00 4.09
3578 4001 1.442769 TGCCGAGATTCACTTTCAGC 58.557 50.000 0.00 0.00 0.00 4.26
3591 4014 1.225855 TAAGCAACACACTTGCCGAG 58.774 50.000 1.45 0.00 45.98 4.63
3692 4115 1.773052 GGTAGGGGGAGGACCAAATAC 59.227 57.143 0.00 0.00 42.91 1.89
3707 4130 2.296471 CCTACGCAATCTGGTAGGTAGG 59.704 54.545 8.69 1.12 46.92 3.18
3728 4151 2.317530 AGGGCTCTAATTCAACTCGC 57.682 50.000 0.00 0.00 0.00 5.03
3817 4240 3.087031 CCGAGTTAACCAGACTACCAGA 58.913 50.000 0.88 0.00 0.00 3.86
3818 4241 2.824341 ACCGAGTTAACCAGACTACCAG 59.176 50.000 0.88 0.00 0.00 4.00
3819 4242 2.559668 CACCGAGTTAACCAGACTACCA 59.440 50.000 0.88 0.00 0.00 3.25
3820 4243 2.673326 GCACCGAGTTAACCAGACTACC 60.673 54.545 0.88 0.00 0.00 3.18
3821 4244 2.230750 AGCACCGAGTTAACCAGACTAC 59.769 50.000 0.88 0.00 0.00 2.73
3822 4245 2.522185 AGCACCGAGTTAACCAGACTA 58.478 47.619 0.88 0.00 0.00 2.59
3823 4246 1.339097 AGCACCGAGTTAACCAGACT 58.661 50.000 0.88 0.00 0.00 3.24
3824 4247 2.165319 AAGCACCGAGTTAACCAGAC 57.835 50.000 0.88 0.00 0.00 3.51
3854 4277 3.799917 GCCACTTGGAAGGTGTGAAAATG 60.800 47.826 0.00 0.00 37.39 2.32
3857 4280 1.341482 TGCCACTTGGAAGGTGTGAAA 60.341 47.619 0.00 0.00 37.39 2.69
3884 4307 6.431234 AGCTTCTACGGATTTTGTCAATCTTT 59.569 34.615 0.00 0.00 0.00 2.52
3899 4322 2.095718 GCACCAAAGAAAGCTTCTACGG 60.096 50.000 0.00 5.83 39.61 4.02
3905 4328 0.385390 CACCGCACCAAAGAAAGCTT 59.615 50.000 0.00 0.00 35.37 3.74
3911 4334 0.321564 CCTCATCACCGCACCAAAGA 60.322 55.000 0.00 0.00 0.00 2.52
3929 4352 4.140536 CCTCCTTTAGCATCCTCAATTCC 58.859 47.826 0.00 0.00 0.00 3.01
3932 4355 3.397527 TCCCTCCTTTAGCATCCTCAAT 58.602 45.455 0.00 0.00 0.00 2.57
3933 4356 2.845659 TCCCTCCTTTAGCATCCTCAA 58.154 47.619 0.00 0.00 0.00 3.02
3934 4357 2.568546 TCCCTCCTTTAGCATCCTCA 57.431 50.000 0.00 0.00 0.00 3.86
3935 4358 2.774809 ACTTCCCTCCTTTAGCATCCTC 59.225 50.000 0.00 0.00 0.00 3.71
3937 4360 2.239907 ACACTTCCCTCCTTTAGCATCC 59.760 50.000 0.00 0.00 0.00 3.51
3938 4361 3.636153 ACACTTCCCTCCTTTAGCATC 57.364 47.619 0.00 0.00 0.00 3.91
3939 4362 4.082125 CAAACACTTCCCTCCTTTAGCAT 58.918 43.478 0.00 0.00 0.00 3.79
3940 4363 3.486383 CAAACACTTCCCTCCTTTAGCA 58.514 45.455 0.00 0.00 0.00 3.49
3941 4364 2.820197 CCAAACACTTCCCTCCTTTAGC 59.180 50.000 0.00 0.00 0.00 3.09
3942 4365 4.072839 GACCAAACACTTCCCTCCTTTAG 58.927 47.826 0.00 0.00 0.00 1.85
3943 4366 3.460340 TGACCAAACACTTCCCTCCTTTA 59.540 43.478 0.00 0.00 0.00 1.85
3944 4367 2.243736 TGACCAAACACTTCCCTCCTTT 59.756 45.455 0.00 0.00 0.00 3.11
3945 4368 1.850345 TGACCAAACACTTCCCTCCTT 59.150 47.619 0.00 0.00 0.00 3.36
3946 4369 1.518367 TGACCAAACACTTCCCTCCT 58.482 50.000 0.00 0.00 0.00 3.69
3947 4370 1.954382 GTTGACCAAACACTTCCCTCC 59.046 52.381 0.00 0.00 38.75 4.30
3948 4371 2.618709 CAGTTGACCAAACACTTCCCTC 59.381 50.000 0.00 0.00 41.61 4.30
3949 4372 2.654863 CAGTTGACCAAACACTTCCCT 58.345 47.619 0.00 0.00 41.61 4.20
3950 4373 1.681264 CCAGTTGACCAAACACTTCCC 59.319 52.381 0.00 0.00 41.61 3.97
3972 4395 5.899120 TCTTATAGGCGAGCATACCTTAG 57.101 43.478 0.00 0.00 37.50 2.18
3984 4407 6.650807 ACATAAACATCCACATCTTATAGGCG 59.349 38.462 0.00 0.00 0.00 5.52
3990 4413 6.413892 TCAGCACATAAACATCCACATCTTA 58.586 36.000 0.00 0.00 0.00 2.10
4007 4430 3.259374 TGAAAACCAGGTTTTTCAGCACA 59.741 39.130 27.72 18.05 45.99 4.57
4013 4436 5.985530 CCTTCTGATGAAAACCAGGTTTTTC 59.014 40.000 27.72 22.19 44.33 2.29
4019 4442 2.450476 CCCCTTCTGATGAAAACCAGG 58.550 52.381 0.00 0.00 0.00 4.45
4062 4485 4.705337 ACTAAACGTTCACAGGCAAAAA 57.295 36.364 0.00 0.00 0.00 1.94
4063 4486 4.705337 AACTAAACGTTCACAGGCAAAA 57.295 36.364 0.00 0.00 0.00 2.44
4090 4513 2.939103 CGCAAACTAAGAGCATAAGCCT 59.061 45.455 0.00 0.00 43.56 4.58
4122 4545 0.172578 CTGACATGCATGGCCTTGTG 59.827 55.000 29.51 12.92 33.92 3.33
4138 4582 2.042464 GGGTAGGAGCATGTCATCTGA 58.958 52.381 0.00 0.00 0.00 3.27
4180 4624 7.830940 TTTTCACGTAAGAAGAACAGTTGTA 57.169 32.000 0.00 0.00 43.62 2.41
4299 4748 8.710835 GGAAAAACCTCAAGTATTTTGAAACA 57.289 30.769 0.00 0.00 35.41 2.83
4470 5008 7.478520 TTTTTCTAGAACTGTGCTAAGTCAC 57.521 36.000 4.18 0.00 37.48 3.67
4494 5032 8.075761 AGTACTCTATCCGTTCCAAAATACTT 57.924 34.615 0.00 0.00 0.00 2.24
4727 5308 5.803020 AATCTCTTGTTGTTATTCTCCGC 57.197 39.130 0.00 0.00 0.00 5.54
4820 5401 7.095695 AGTGTTGGCATTGTAAATACCATAC 57.904 36.000 0.00 0.00 0.00 2.39
4827 5408 8.367156 ACAATTTCTAGTGTTGGCATTGTAAAT 58.633 29.630 0.00 0.00 0.00 1.40
4844 5425 6.823689 GGAGCCAACTATCAAGACAATTTCTA 59.176 38.462 0.00 0.00 32.51 2.10
4882 5463 3.620966 GCTGAGTTCTTCTATGCCTGGTT 60.621 47.826 0.00 0.00 0.00 3.67
4922 5506 4.335082 TGCTTCGTTTGATAAATGGTCG 57.665 40.909 0.00 0.00 0.00 4.79
5211 5795 0.872388 GAACAACCGGACACCATCAC 59.128 55.000 9.46 0.00 0.00 3.06
5299 5883 5.580297 TGATCGACATCGTCATCATGAAAAA 59.420 36.000 0.00 0.00 40.80 1.94
5301 5885 4.681744 TGATCGACATCGTCATCATGAAA 58.318 39.130 0.00 0.00 40.80 2.69
5303 5887 3.988379 TGATCGACATCGTCATCATGA 57.012 42.857 0.00 0.00 40.80 3.07
5304 5888 3.798337 TGTTGATCGACATCGTCATCATG 59.202 43.478 11.98 0.00 40.80 3.07
5307 5891 3.859961 ACTTGTTGATCGACATCGTCATC 59.140 43.478 16.62 0.00 40.80 2.92
5308 5892 3.849911 ACTTGTTGATCGACATCGTCAT 58.150 40.909 16.62 0.00 40.80 3.06
5309 5893 3.297830 ACTTGTTGATCGACATCGTCA 57.702 42.857 16.62 0.53 40.80 4.35
5310 5894 4.163552 TGTACTTGTTGATCGACATCGTC 58.836 43.478 16.62 8.74 40.80 4.20
5311 5895 4.166523 CTGTACTTGTTGATCGACATCGT 58.833 43.478 16.62 17.24 40.80 3.73
5312 5896 3.000674 GCTGTACTTGTTGATCGACATCG 60.001 47.826 16.62 12.77 41.45 3.84
5313 5897 4.177026 AGCTGTACTTGTTGATCGACATC 58.823 43.478 16.62 8.43 0.00 3.06
5314 5898 4.193826 AGCTGTACTTGTTGATCGACAT 57.806 40.909 16.62 5.57 0.00 3.06
5315 5899 3.660501 AGCTGTACTTGTTGATCGACA 57.339 42.857 11.98 11.98 0.00 4.35
5316 5900 6.531948 AGAAATAGCTGTACTTGTTGATCGAC 59.468 38.462 6.11 6.11 0.00 4.20
5317 5901 6.631016 AGAAATAGCTGTACTTGTTGATCGA 58.369 36.000 0.00 0.00 0.00 3.59
5318 5902 6.893958 AGAAATAGCTGTACTTGTTGATCG 57.106 37.500 0.00 0.00 0.00 3.69
5369 5983 4.813161 AGAACGCAGGAATGTGATATGAAG 59.187 41.667 0.00 0.00 0.00 3.02
5407 6021 1.471501 GCATACTGGATGTGAGCACGA 60.472 52.381 1.15 0.00 37.90 4.35
5509 6128 9.458727 ACATCAATCCCTTTGCTATATAATGAG 57.541 33.333 0.00 0.00 35.16 2.90
5641 6299 1.731433 TAGTCCGCATACCGAGGTGC 61.731 60.000 4.80 0.00 40.02 5.01
5672 6330 1.865865 GTCGAGACAAGAAACCAGCA 58.134 50.000 0.00 0.00 0.00 4.41
5735 6393 7.013083 CACTAAGAAATATCTCAGCAAGCCAAT 59.987 37.037 0.00 0.00 33.77 3.16
5797 6475 3.383761 CTGCAGATGAAAAACCAACACC 58.616 45.455 8.42 0.00 0.00 4.16
5820 6532 1.672854 CTCCCGGCGTCTCATTGGTA 61.673 60.000 6.01 0.00 0.00 3.25
5945 6657 8.978874 ATATGACATGTGAGCTTAACCAATAA 57.021 30.769 1.15 0.00 0.00 1.40
6061 6779 6.319715 AGGGGCTTCCATAAAAGTTTCTTTA 58.680 36.000 0.00 0.00 38.24 1.85
6201 6927 0.608035 TTCATCAGGAACGCCCCAAC 60.608 55.000 0.00 0.00 34.66 3.77
6311 7043 8.594550 ACAACTAGTCTCAACACAACCTTATAT 58.405 33.333 0.00 0.00 0.00 0.86
6340 7072 4.455606 GGCAAAACTACCATATCTCAGCT 58.544 43.478 0.00 0.00 0.00 4.24
6370 7102 6.083098 TCAACATCCATAACAACAAACCAG 57.917 37.500 0.00 0.00 0.00 4.00
6377 7109 6.266168 TCCATGTTCAACATCCATAACAAC 57.734 37.500 0.00 0.00 36.53 3.32
6460 7192 2.096496 GGTACATGCTTGATCTGTGTGC 59.904 50.000 6.60 0.00 0.00 4.57
6475 7207 1.916181 CTCCCCAAACTCAGGGTACAT 59.084 52.381 0.00 0.00 45.28 2.29
6489 7221 3.055328 TGCATATTCTCATTCCTCCCCA 58.945 45.455 0.00 0.00 0.00 4.96
6490 7222 3.683802 CTGCATATTCTCATTCCTCCCC 58.316 50.000 0.00 0.00 0.00 4.81
6502 7234 1.477700 TGTTTGGCCTGCTGCATATTC 59.522 47.619 3.32 0.00 43.89 1.75
6504 7236 0.819582 GTGTTTGGCCTGCTGCATAT 59.180 50.000 3.32 0.00 43.89 1.78
6517 7249 7.026631 TGACTGAGGTTTCATTAAGTGTTTG 57.973 36.000 0.00 0.00 31.68 2.93
6559 7291 7.012704 CCATAACCACTGGAATTATGTTCAGAG 59.987 40.741 0.71 0.00 35.44 3.35
6560 7292 6.828273 CCATAACCACTGGAATTATGTTCAGA 59.172 38.462 0.71 0.00 35.44 3.27
6583 7388 3.007940 CCCCGCATGATTAAGTATCTCCA 59.992 47.826 0.00 0.00 34.17 3.86
6648 7453 1.616159 TGGAGTTGCCCTAAGTTTGC 58.384 50.000 0.00 0.00 34.97 3.68
6652 7457 1.073923 CCTGTTGGAGTTGCCCTAAGT 59.926 52.381 0.00 0.00 34.97 2.24
6666 7471 0.031857 TGAAATGCGTTGGCCTGTTG 59.968 50.000 3.32 0.00 38.85 3.33
6667 7472 0.968405 ATGAAATGCGTTGGCCTGTT 59.032 45.000 3.32 0.00 38.85 3.16
6668 7473 0.527565 GATGAAATGCGTTGGCCTGT 59.472 50.000 3.32 0.00 38.85 4.00
6669 7474 0.179129 GGATGAAATGCGTTGGCCTG 60.179 55.000 3.32 0.00 38.85 4.85
6670 7475 2.192605 GGATGAAATGCGTTGGCCT 58.807 52.632 3.32 0.00 38.85 5.19
6671 7476 4.812814 GGATGAAATGCGTTGGCC 57.187 55.556 0.00 0.00 38.85 5.36
6685 7490 0.460284 GAACACGGATGCAGTCGGAT 60.460 55.000 14.49 1.30 0.00 4.18
6703 7508 1.593933 GTTTTTGTCCGCACGTACAGA 59.406 47.619 0.00 0.00 0.00 3.41
6752 7557 2.852449 TGGACAGCAAAACGGACATTA 58.148 42.857 0.00 0.00 0.00 1.90
6753 7558 1.686355 TGGACAGCAAAACGGACATT 58.314 45.000 0.00 0.00 0.00 2.71
6783 7588 5.777526 AACCCAGCCCAAATTTGAATTAT 57.222 34.783 19.86 0.00 0.00 1.28
6820 7632 4.529219 CCTATGCGCGTGGGCTGA 62.529 66.667 19.79 0.00 36.88 4.26
6822 7634 4.838152 CACCTATGCGCGTGGGCT 62.838 66.667 29.82 15.37 36.88 5.19
6978 7814 9.727627 TTTAACATTTTTCAAATGATTGGCAAC 57.272 25.926 14.66 0.00 37.15 4.17
6980 7816 9.894783 CATTTAACATTTTTCAAATGATTGGCA 57.105 25.926 14.66 0.00 39.59 4.92
6981 7817 9.896263 ACATTTAACATTTTTCAAATGATTGGC 57.104 25.926 14.66 0.00 39.59 4.52
6989 7825 8.997323 CCCTATGCACATTTAACATTTTTCAAA 58.003 29.630 0.00 0.00 0.00 2.69
6990 7826 8.370940 TCCCTATGCACATTTAACATTTTTCAA 58.629 29.630 0.00 0.00 0.00 2.69
6991 7827 7.901029 TCCCTATGCACATTTAACATTTTTCA 58.099 30.769 0.00 0.00 0.00 2.69
6992 7828 8.770438 TTCCCTATGCACATTTAACATTTTTC 57.230 30.769 0.00 0.00 0.00 2.29
6993 7829 9.566432 TTTTCCCTATGCACATTTAACATTTTT 57.434 25.926 0.00 0.00 0.00 1.94
6994 7830 9.566432 TTTTTCCCTATGCACATTTAACATTTT 57.434 25.926 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.