Multiple sequence alignment - TraesCS5A01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G280900 chr5A 100.000 4851 0 0 1 4851 490035242 490040092 0.000000e+00 8959.0
1 TraesCS5A01G280900 chr5B 89.504 2963 142 76 1455 4348 465834603 465837465 0.000000e+00 3592.0
2 TraesCS5A01G280900 chr5B 93.521 710 27 9 704 1408 465833804 465834499 0.000000e+00 1038.0
3 TraesCS5A01G280900 chr5B 83.977 699 76 25 4 692 707895524 707896196 5.300000e-179 638.0
4 TraesCS5A01G280900 chr5B 94.226 381 18 3 315 695 71643682 71643306 3.260000e-161 579.0
5 TraesCS5A01G280900 chr5B 96.486 313 11 0 7 319 71644105 71643793 7.200000e-143 518.0
6 TraesCS5A01G280900 chr5D 92.577 2196 83 27 2688 4848 387298566 387300716 0.000000e+00 3079.0
7 TraesCS5A01G280900 chr5D 89.139 1998 100 48 704 2623 387296399 387298357 0.000000e+00 2379.0
8 TraesCS5A01G280900 chr1B 98.843 605 6 1 1 605 454928840 454929443 0.000000e+00 1077.0
9 TraesCS5A01G280900 chr3A 95.082 488 23 1 2 489 636824741 636825227 0.000000e+00 767.0
10 TraesCS5A01G280900 chr3A 94.811 424 21 1 2 424 62444894 62445317 0.000000e+00 660.0
11 TraesCS5A01G280900 chr3A 95.349 215 10 0 481 695 636827581 636827795 4.650000e-90 342.0
12 TraesCS5A01G280900 chr3A 92.973 185 12 1 504 687 62445339 62445523 8.000000e-68 268.0
13 TraesCS5A01G280900 chr2B 84.801 704 70 26 4 696 775601592 775602269 0.000000e+00 673.0
14 TraesCS5A01G280900 chr2B 82.581 310 42 9 393 696 655633220 655633523 3.720000e-66 263.0
15 TraesCS5A01G280900 chr2D 93.438 381 22 2 315 695 520503819 520503442 3.280000e-156 562.0
16 TraesCS5A01G280900 chr2D 95.625 320 13 1 1 319 520504249 520503930 3.350000e-141 512.0
17 TraesCS5A01G280900 chr2A 86.158 419 26 21 279 695 625954093 625954481 1.610000e-114 424.0
18 TraesCS5A01G280900 chr2A 94.118 85 5 0 2 86 625953729 625953813 3.940000e-26 130.0
19 TraesCS5A01G280900 chr3B 87.541 305 21 7 853 1144 119395349 119395049 2.160000e-88 337.0
20 TraesCS5A01G280900 chr3B 95.082 122 6 0 575 696 597057980 597058101 4.950000e-45 193.0
21 TraesCS5A01G280900 chr3D 82.353 102 10 5 261 354 393062374 393062475 1.120000e-11 82.4
22 TraesCS5A01G280900 chr7D 79.381 97 15 4 4727 4821 416239044 416238951 4.050000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G280900 chr5A 490035242 490040092 4850 False 8959.0 8959 100.0000 1 4851 1 chr5A.!!$F1 4850
1 TraesCS5A01G280900 chr5B 465833804 465837465 3661 False 2315.0 3592 91.5125 704 4348 2 chr5B.!!$F2 3644
2 TraesCS5A01G280900 chr5B 707895524 707896196 672 False 638.0 638 83.9770 4 692 1 chr5B.!!$F1 688
3 TraesCS5A01G280900 chr5B 71643306 71644105 799 True 548.5 579 95.3560 7 695 2 chr5B.!!$R1 688
4 TraesCS5A01G280900 chr5D 387296399 387300716 4317 False 2729.0 3079 90.8580 704 4848 2 chr5D.!!$F1 4144
5 TraesCS5A01G280900 chr1B 454928840 454929443 603 False 1077.0 1077 98.8430 1 605 1 chr1B.!!$F1 604
6 TraesCS5A01G280900 chr3A 636824741 636827795 3054 False 554.5 767 95.2155 2 695 2 chr3A.!!$F2 693
7 TraesCS5A01G280900 chr3A 62444894 62445523 629 False 464.0 660 93.8920 2 687 2 chr3A.!!$F1 685
8 TraesCS5A01G280900 chr2B 775601592 775602269 677 False 673.0 673 84.8010 4 696 1 chr2B.!!$F2 692
9 TraesCS5A01G280900 chr2D 520503442 520504249 807 True 537.0 562 94.5315 1 695 2 chr2D.!!$R1 694
10 TraesCS5A01G280900 chr2A 625953729 625954481 752 False 277.0 424 90.1380 2 695 2 chr2A.!!$F1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 3516 2.104729 CTCCGCTCTGCTCAGCTC 59.895 66.667 0.00 0.0 37.25 4.09 F
1515 4217 0.033503 TATCCTCCTGTCGGTGAGCA 60.034 55.000 0.00 0.0 0.00 4.26 F
2720 5631 0.036164 TGAATGGGTCACCCTCAACG 59.964 55.000 16.04 0.0 45.70 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 4538 0.237235 CGCTACGGCTTTTCTGCAAA 59.763 50.0 0.00 0.00 36.09 3.68 R
3496 6420 0.602905 CCGAGTTCACCTTGGTGTCC 60.603 60.0 18.05 10.51 39.63 4.02 R
4546 7503 0.511221 ACAAACGCTGACCGATTTCG 59.489 50.0 0.00 0.00 41.02 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
696 3316 4.760204 CCGTATCACTTGATATTTTCCCCC 59.240 45.833 2.31 0.00 39.03 5.40
697 3317 4.451096 CGTATCACTTGATATTTTCCCCCG 59.549 45.833 2.31 0.00 39.03 5.73
698 3318 4.788925 ATCACTTGATATTTTCCCCCGA 57.211 40.909 0.00 0.00 32.01 5.14
699 3319 4.150897 TCACTTGATATTTTCCCCCGAG 57.849 45.455 0.00 0.00 0.00 4.63
700 3320 3.118038 TCACTTGATATTTTCCCCCGAGG 60.118 47.826 0.00 0.00 0.00 4.63
701 3321 3.118038 CACTTGATATTTTCCCCCGAGGA 60.118 47.826 0.00 0.00 45.68 3.71
702 3322 8.601672 ATCACTTGATATTTTCCCCCGAGGAC 62.602 46.154 0.00 0.00 37.41 3.85
820 3440 2.844224 TACGCGCACACAGCTACTCG 62.844 60.000 5.73 0.00 42.61 4.18
889 3514 4.447989 TGCTCCGCTCTGCTCAGC 62.448 66.667 0.00 0.00 35.90 4.26
890 3515 4.146075 GCTCCGCTCTGCTCAGCT 62.146 66.667 0.00 0.00 37.25 4.24
891 3516 2.104729 CTCCGCTCTGCTCAGCTC 59.895 66.667 0.00 0.00 37.25 4.09
892 3517 2.677875 TCCGCTCTGCTCAGCTCA 60.678 61.111 0.00 0.00 37.25 4.26
893 3518 2.202770 CCGCTCTGCTCAGCTCAG 60.203 66.667 0.00 0.00 37.25 3.35
894 3519 2.886604 CGCTCTGCTCAGCTCAGC 60.887 66.667 1.01 1.01 37.25 4.26
897 3522 4.447989 TCTGCTCAGCTCAGCGCC 62.448 66.667 4.73 0.00 42.92 6.53
938 3568 2.795110 ATCCCGAGCTGAGCTGAGC 61.795 63.158 18.32 18.32 39.88 4.26
965 3595 2.581354 CACTAGCGGCCAAGCTCT 59.419 61.111 8.56 0.00 45.67 4.09
974 3604 2.105128 CCAAGCTCTAGACGCCGG 59.895 66.667 0.00 0.00 0.00 6.13
976 3606 2.756283 AAGCTCTAGACGCCGGCT 60.756 61.111 26.68 11.91 34.52 5.52
977 3607 3.069980 AAGCTCTAGACGCCGGCTG 62.070 63.158 26.68 20.24 33.30 4.85
979 3609 4.577246 CTCTAGACGCCGGCTGCC 62.577 72.222 26.68 9.11 36.24 4.85
981 3611 4.577246 CTAGACGCCGGCTGCCTC 62.577 72.222 26.68 13.18 36.24 4.70
1095 3734 0.257039 ACATCACCAAGATCCTGGCC 59.743 55.000 10.46 0.00 40.45 5.36
1097 3736 0.982852 ATCACCAAGATCCTGGCCGA 60.983 55.000 10.46 7.80 40.45 5.54
1368 4012 3.848726 ACCGTACCGTACCAAGTTATTG 58.151 45.455 3.04 0.00 36.09 1.90
1394 4039 3.522731 CACCCTCCTCCTCGCTCG 61.523 72.222 0.00 0.00 0.00 5.03
1448 4111 0.953003 AAGAGTCGCCGGTAGATAGC 59.047 55.000 1.90 0.00 0.00 2.97
1459 4161 1.733360 GGTAGATAGCCGCTAGTCTCG 59.267 57.143 6.23 0.00 0.00 4.04
1461 4163 0.606944 AGATAGCCGCTAGTCTCGGG 60.607 60.000 6.23 0.00 46.51 5.14
1514 4216 0.671251 CTATCCTCCTGTCGGTGAGC 59.329 60.000 0.00 0.00 0.00 4.26
1515 4217 0.033503 TATCCTCCTGTCGGTGAGCA 60.034 55.000 0.00 0.00 0.00 4.26
1524 4226 3.689161 CCTGTCGGTGAGCATGAAATTAA 59.311 43.478 0.00 0.00 0.00 1.40
1533 4235 6.183360 GGTGAGCATGAAATTAAGGGAGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
1585 4287 6.560253 TTTAAGCTTTGAACCTCAGCTTAG 57.440 37.500 3.20 0.00 45.08 2.18
1604 4314 5.627367 GCTTAGAGTCACTGTATTAGCATCG 59.373 44.000 1.61 0.00 0.00 3.84
1622 4332 1.340248 TCGTTGGACTCTGGACAGTTC 59.660 52.381 0.00 0.00 0.00 3.01
1625 4335 3.612004 CGTTGGACTCTGGACAGTTCTAC 60.612 52.174 0.00 0.00 0.00 2.59
1631 4341 5.216614 ACTCTGGACAGTTCTACCTTTTC 57.783 43.478 0.00 0.00 0.00 2.29
1682 4392 5.663106 ACTAACTGATTGCATCTCCTCCTAA 59.337 40.000 0.00 0.00 0.00 2.69
1747 4457 9.601217 AAACGTCTATTCTTGAAATAGCAGTAT 57.399 29.630 0.00 0.00 31.88 2.12
1765 4475 6.761242 AGCAGTATTCATCGTATGCTGTTTTA 59.239 34.615 0.00 0.00 42.11 1.52
1770 4480 6.844696 TTCATCGTATGCTGTTTTATCCTC 57.155 37.500 0.00 0.00 0.00 3.71
1775 4485 6.112734 TCGTATGCTGTTTTATCCTCAACAT 58.887 36.000 0.00 0.00 32.50 2.71
1825 4535 0.478072 TTTCCCAGCTGCTCCTTTGA 59.522 50.000 8.66 0.00 0.00 2.69
1828 4538 0.323178 CCCAGCTGCTCCTTTGATGT 60.323 55.000 8.66 0.00 0.00 3.06
1830 4540 1.891150 CCAGCTGCTCCTTTGATGTTT 59.109 47.619 8.66 0.00 0.00 2.83
1849 4575 2.785258 CAGAAAAGCCGTAGCGCC 59.215 61.111 2.29 0.00 46.67 6.53
1883 4609 2.964740 TCTTCCTTCTTCGTGATGCAG 58.035 47.619 0.00 0.00 0.00 4.41
1884 4610 2.300152 TCTTCCTTCTTCGTGATGCAGT 59.700 45.455 0.00 0.00 0.00 4.40
1885 4611 3.509967 TCTTCCTTCTTCGTGATGCAGTA 59.490 43.478 0.00 0.00 0.00 2.74
1886 4612 3.510388 TCCTTCTTCGTGATGCAGTAG 57.490 47.619 0.00 0.00 0.00 2.57
1887 4613 1.929836 CCTTCTTCGTGATGCAGTAGC 59.070 52.381 0.00 0.00 42.57 3.58
1917 4653 1.344598 TGGATGGGGTTCCGGATAGAA 60.345 52.381 4.15 0.00 38.74 2.10
1918 4654 1.985895 GGATGGGGTTCCGGATAGAAT 59.014 52.381 4.15 0.00 35.24 2.40
1919 4655 2.027100 GGATGGGGTTCCGGATAGAATC 60.027 54.545 4.15 5.57 35.24 2.52
1920 4656 2.184088 TGGGGTTCCGGATAGAATCA 57.816 50.000 4.15 0.00 35.24 2.57
1921 4657 2.701551 TGGGGTTCCGGATAGAATCAT 58.298 47.619 4.15 0.00 35.24 2.45
1922 4658 3.864328 TGGGGTTCCGGATAGAATCATA 58.136 45.455 4.15 0.00 35.24 2.15
1923 4659 3.838317 TGGGGTTCCGGATAGAATCATAG 59.162 47.826 4.15 0.00 35.24 2.23
1924 4660 4.094476 GGGGTTCCGGATAGAATCATAGA 58.906 47.826 4.15 0.00 0.00 1.98
2056 4804 4.396790 TGGAATTAATGGCGTCTTTGTACC 59.603 41.667 0.00 0.00 0.00 3.34
2057 4805 4.396790 GGAATTAATGGCGTCTTTGTACCA 59.603 41.667 0.00 0.00 36.43 3.25
2072 4820 8.015658 GTCTTTGTACCACTATCAACAAATGAC 58.984 37.037 0.00 0.00 41.93 3.06
2083 4831 4.536065 TCAACAAATGACAATGTCGCTTC 58.464 39.130 9.00 0.00 34.95 3.86
2148 4896 0.933047 TGACACACGTCGCTTTCGAG 60.933 55.000 0.00 0.00 46.46 4.04
2387 5151 7.925043 CATTTGAAAATGATGGGAATTGGAA 57.075 32.000 9.69 0.00 46.72 3.53
2427 5191 7.566709 TCTCGCCGTTTTTAAACTAGTTTAAG 58.433 34.615 29.88 22.24 43.36 1.85
2466 5230 9.692325 AGATAAGATTGCCTCTTTGTTTAGATT 57.308 29.630 4.19 0.00 41.60 2.40
2531 5295 2.092103 ACCCACTGGTTAGTTGCTTCAA 60.092 45.455 0.00 0.00 44.75 2.69
2584 5348 8.870242 GTGTACTCCACGTTTGTAATAATTTC 57.130 34.615 0.00 0.00 33.61 2.17
2586 5350 6.173191 ACTCCACGTTTGTAATAATTTCGG 57.827 37.500 0.00 0.00 0.00 4.30
2629 5396 3.778954 AGATGGCCTACTAATTGGAGC 57.221 47.619 3.32 0.00 0.00 4.70
2634 5401 3.134081 TGGCCTACTAATTGGAGCAGTAC 59.866 47.826 3.32 0.00 0.00 2.73
2636 5403 4.587684 GGCCTACTAATTGGAGCAGTACTA 59.412 45.833 0.00 0.00 0.00 1.82
2637 5404 5.279056 GGCCTACTAATTGGAGCAGTACTAG 60.279 48.000 0.00 0.00 0.00 2.57
2638 5405 5.302313 GCCTACTAATTGGAGCAGTACTAGT 59.698 44.000 0.00 0.00 0.00 2.57
2639 5406 6.736243 GCCTACTAATTGGAGCAGTACTAGTG 60.736 46.154 5.39 0.00 0.00 2.74
2654 5421 6.372014 GTACTAGTGTACACATTTGTCACG 57.628 41.667 27.06 7.20 46.06 4.35
2655 5422 4.304110 ACTAGTGTACACATTTGTCACGG 58.696 43.478 27.06 7.26 38.12 4.94
2656 5423 3.462483 AGTGTACACATTTGTCACGGA 57.538 42.857 27.06 0.00 38.12 4.69
2658 5425 4.385825 AGTGTACACATTTGTCACGGAAT 58.614 39.130 27.06 0.00 38.12 3.01
2659 5426 4.819630 AGTGTACACATTTGTCACGGAATT 59.180 37.500 27.06 0.00 38.12 2.17
2661 5428 4.816925 TGTACACATTTGTCACGGAATTCA 59.183 37.500 7.93 0.00 37.15 2.57
2662 5429 4.223320 ACACATTTGTCACGGAATTCAC 57.777 40.909 7.93 0.00 0.00 3.18
2663 5430 3.882888 ACACATTTGTCACGGAATTCACT 59.117 39.130 7.93 0.00 0.00 3.41
2666 5433 5.851177 CACATTTGTCACGGAATTCACTAAC 59.149 40.000 7.93 0.92 0.00 2.34
2667 5434 5.763204 ACATTTGTCACGGAATTCACTAACT 59.237 36.000 7.93 0.00 0.00 2.24
2668 5435 5.917541 TTTGTCACGGAATTCACTAACTC 57.082 39.130 7.93 0.00 0.00 3.01
2669 5436 3.921677 TGTCACGGAATTCACTAACTCC 58.078 45.455 7.93 0.00 0.00 3.85
2674 5441 5.468746 TCACGGAATTCACTAACTCCAAAAG 59.531 40.000 7.93 0.00 0.00 2.27
2714 5625 1.102978 CCGAATTGAATGGGTCACCC 58.897 55.000 5.63 5.63 45.71 4.61
2720 5631 0.036164 TGAATGGGTCACCCTCAACG 59.964 55.000 16.04 0.00 45.70 4.10
2727 5638 0.179067 GTCACCCTCAACGTGGACAA 60.179 55.000 0.00 0.00 0.00 3.18
2728 5639 0.762418 TCACCCTCAACGTGGACAAT 59.238 50.000 0.00 0.00 0.00 2.71
2729 5640 1.156736 CACCCTCAACGTGGACAATC 58.843 55.000 0.00 0.00 0.00 2.67
2730 5641 0.036306 ACCCTCAACGTGGACAATCC 59.964 55.000 0.00 0.00 36.96 3.01
2733 5644 2.504367 CCTCAACGTGGACAATCCTTT 58.496 47.619 0.00 0.00 37.46 3.11
2734 5645 2.484264 CCTCAACGTGGACAATCCTTTC 59.516 50.000 0.00 0.00 37.46 2.62
2735 5646 2.484264 CTCAACGTGGACAATCCTTTCC 59.516 50.000 0.00 0.00 37.46 3.13
2736 5647 2.105821 TCAACGTGGACAATCCTTTCCT 59.894 45.455 0.00 0.00 37.46 3.36
2737 5648 3.325425 TCAACGTGGACAATCCTTTCCTA 59.675 43.478 0.00 0.00 37.46 2.94
2738 5649 3.329929 ACGTGGACAATCCTTTCCTAC 57.670 47.619 0.00 0.00 37.46 3.18
2739 5650 2.904434 ACGTGGACAATCCTTTCCTACT 59.096 45.455 0.00 0.00 37.46 2.57
2740 5651 3.262420 CGTGGACAATCCTTTCCTACTG 58.738 50.000 0.00 0.00 37.46 2.74
2741 5652 3.610911 GTGGACAATCCTTTCCTACTGG 58.389 50.000 0.00 0.00 37.46 4.00
2905 5824 3.611549 CGAAACCTTTCTACTAGTTCGCC 59.388 47.826 0.00 0.00 35.07 5.54
2908 5827 1.189403 CTTTCTACTAGTTCGCCGCG 58.811 55.000 6.39 6.39 0.00 6.46
2913 5832 2.613595 TCTACTAGTTCGCCGCGATTAA 59.386 45.455 17.62 0.00 35.23 1.40
2918 5842 0.297820 GTTCGCCGCGATTAACTGAG 59.702 55.000 17.62 0.00 35.23 3.35
2935 5859 3.198068 CTGAGATGGGTTAATGGTCGTG 58.802 50.000 0.00 0.00 0.00 4.35
3469 6393 0.803740 AGGACTACAGCTTCGACGTC 59.196 55.000 5.18 5.18 0.00 4.34
3517 6441 2.430367 ACCAAGGTGAACTCGGCC 59.570 61.111 0.00 0.00 0.00 6.13
3891 6816 2.687935 TGTTTTTGTGCTGAGTTCTCCC 59.312 45.455 0.00 0.00 0.00 4.30
3916 6841 5.576447 AATTCGTGGCCCTTGTTATTTAG 57.424 39.130 0.00 0.00 0.00 1.85
3926 6851 4.322539 CCCTTGTTATTTAGCGCGAAAAAC 59.677 41.667 19.49 20.93 0.00 2.43
3981 6906 4.321527 GCATGTCCTGAAGAAAAAGAAGGG 60.322 45.833 0.00 0.00 0.00 3.95
4000 6925 5.079998 AGGGAAAAGACAGGAATTTCCTT 57.920 39.130 15.50 7.43 46.91 3.36
4119 7050 7.334421 TGGAGCTTAGAGTGATGTACAATTTTC 59.666 37.037 0.00 0.00 0.00 2.29
4157 7092 4.359706 ACTTTTGCCTTTTAAGCTGTTCG 58.640 39.130 0.00 0.00 0.00 3.95
4158 7093 4.097286 ACTTTTGCCTTTTAAGCTGTTCGA 59.903 37.500 0.00 0.00 0.00 3.71
4162 7097 2.917343 GCCTTTTAAGCTGTTCGAATGC 59.083 45.455 15.34 15.34 0.00 3.56
4222 7157 1.511305 GAGCTTCCCGTGTGATCGA 59.489 57.895 0.00 0.00 0.00 3.59
4227 7162 2.826428 CTTCCCGTGTGATCGATTGAT 58.174 47.619 0.00 0.00 37.60 2.57
4348 7283 3.158676 GCCGGTCTACCTCATCTCTTAT 58.841 50.000 1.90 0.00 0.00 1.73
4349 7284 3.057174 GCCGGTCTACCTCATCTCTTATG 60.057 52.174 1.90 0.00 0.00 1.90
4351 7286 4.145807 CGGTCTACCTCATCTCTTATGGT 58.854 47.826 0.00 0.00 35.05 3.55
4426 7363 8.934507 TTTTGAGTTTTATTAGGGTTTGTGTG 57.065 30.769 0.00 0.00 0.00 3.82
4427 7364 7.883391 TTGAGTTTTATTAGGGTTTGTGTGA 57.117 32.000 0.00 0.00 0.00 3.58
4428 7365 7.266922 TGAGTTTTATTAGGGTTTGTGTGAC 57.733 36.000 0.00 0.00 0.00 3.67
4429 7366 6.829298 TGAGTTTTATTAGGGTTTGTGTGACA 59.171 34.615 0.00 0.00 0.00 3.58
4434 7391 0.751643 AGGGTTTGTGTGACAGTGGC 60.752 55.000 0.00 0.00 0.00 5.01
4452 7409 6.111382 CAGTGGCTCTGAAGATGAAATAAGA 58.889 40.000 10.99 0.00 46.27 2.10
4455 7412 7.833183 AGTGGCTCTGAAGATGAAATAAGATTT 59.167 33.333 0.00 0.00 0.00 2.17
4457 7414 9.028284 TGGCTCTGAAGATGAAATAAGATTTTT 57.972 29.630 0.00 0.00 0.00 1.94
4483 7440 5.047590 TCGTCTATTTCAGTGGTGCTTCTAA 60.048 40.000 0.00 0.00 0.00 2.10
4493 7450 2.560981 TGGTGCTTCTAACGTCATCAGA 59.439 45.455 0.00 0.00 0.00 3.27
4503 7460 1.657751 CGTCATCAGAGGGTCTGCGA 61.658 60.000 0.00 0.00 43.95 5.10
4505 7462 1.066858 GTCATCAGAGGGTCTGCGAAA 60.067 52.381 0.00 0.00 43.95 3.46
4526 7483 6.090358 CGAAAGTTTGTCTTCGGCTAATCTTA 59.910 38.462 0.00 0.00 35.02 2.10
4531 7488 3.709653 TGTCTTCGGCTAATCTTATGGGT 59.290 43.478 0.00 0.00 0.00 4.51
4532 7489 4.163458 TGTCTTCGGCTAATCTTATGGGTT 59.837 41.667 0.00 0.00 0.00 4.11
4533 7490 5.123936 GTCTTCGGCTAATCTTATGGGTTT 58.876 41.667 0.00 0.00 0.00 3.27
4534 7491 5.007724 GTCTTCGGCTAATCTTATGGGTTTG 59.992 44.000 0.00 0.00 0.00 2.93
4535 7492 3.815809 TCGGCTAATCTTATGGGTTTGG 58.184 45.455 0.00 0.00 0.00 3.28
4536 7493 2.293399 CGGCTAATCTTATGGGTTTGGC 59.707 50.000 0.00 0.00 0.00 4.52
4537 7494 3.566351 GGCTAATCTTATGGGTTTGGCT 58.434 45.455 0.00 0.00 0.00 4.75
4538 7495 4.725490 GGCTAATCTTATGGGTTTGGCTA 58.275 43.478 0.00 0.00 0.00 3.93
4539 7496 5.137551 GGCTAATCTTATGGGTTTGGCTAA 58.862 41.667 0.00 0.00 0.00 3.09
4540 7497 5.775195 GGCTAATCTTATGGGTTTGGCTAAT 59.225 40.000 0.00 0.00 0.00 1.73
4541 7498 6.946009 GGCTAATCTTATGGGTTTGGCTAATA 59.054 38.462 0.00 0.00 0.00 0.98
4542 7499 7.615757 GGCTAATCTTATGGGTTTGGCTAATAT 59.384 37.037 0.00 0.00 0.00 1.28
4543 7500 9.025041 GCTAATCTTATGGGTTTGGCTAATATT 57.975 33.333 0.00 0.00 0.00 1.28
4547 7504 8.786826 TCTTATGGGTTTGGCTAATATTATCG 57.213 34.615 0.00 0.00 0.00 2.92
4548 7505 8.598916 TCTTATGGGTTTGGCTAATATTATCGA 58.401 33.333 0.00 0.00 0.00 3.59
4559 7516 6.237861 GGCTAATATTATCGAAATCGGTCAGC 60.238 42.308 2.63 0.00 40.29 4.26
4612 7569 6.025749 TGTCTTTATCTGTGTGTCTACAGG 57.974 41.667 6.12 0.00 46.26 4.00
4619 7576 1.414919 TGTGTGTCTACAGGTTGGACC 59.585 52.381 0.00 0.00 37.52 4.46
4623 7580 2.039879 GTGTCTACAGGTTGGACCCATT 59.960 50.000 0.00 0.00 39.75 3.16
4642 7599 4.500837 CCATTTGATCTACGTGTCTCTTCG 59.499 45.833 0.00 0.00 0.00 3.79
4645 7602 3.332034 TGATCTACGTGTCTCTTCGTCA 58.668 45.455 0.00 0.00 40.70 4.35
4649 7606 1.082038 CGTGTCTCTTCGTCAGCGT 60.082 57.895 0.00 0.00 39.49 5.07
4650 7607 1.060726 CGTGTCTCTTCGTCAGCGTC 61.061 60.000 0.00 0.00 39.49 5.19
4651 7608 0.040336 GTGTCTCTTCGTCAGCGTCA 60.040 55.000 0.00 0.00 39.49 4.35
4652 7609 0.666374 TGTCTCTTCGTCAGCGTCAA 59.334 50.000 0.00 0.00 39.49 3.18
4653 7610 1.053811 GTCTCTTCGTCAGCGTCAAC 58.946 55.000 0.00 0.00 39.49 3.18
4654 7611 0.385598 TCTCTTCGTCAGCGTCAACG 60.386 55.000 0.00 0.00 43.27 4.10
4655 7612 0.385598 CTCTTCGTCAGCGTCAACGA 60.386 55.000 6.75 4.58 45.37 3.85
4656 7613 0.659417 TCTTCGTCAGCGTCAACGAC 60.659 55.000 6.75 0.00 46.56 4.34
4697 7654 7.052873 GCATTGATCCTATATGGTCTTAGCAT 58.947 38.462 0.00 0.00 39.88 3.79
4706 7663 8.099537 CCTATATGGTCTTAGCATGATGACTTT 58.900 37.037 0.00 0.00 36.89 2.66
4711 7668 6.100279 TGGTCTTAGCATGATGACTTTCCTAT 59.900 38.462 0.00 0.00 0.00 2.57
4763 7720 0.833949 GAGGGAGGAGGGACAATGAC 59.166 60.000 0.00 0.00 0.00 3.06
4771 7728 2.690778 GGGACAATGACAGCGGCAC 61.691 63.158 1.45 0.00 0.00 5.01
4810 7767 5.352284 CAATTCTTGTAGTCATCGCTAGGT 58.648 41.667 0.00 0.00 0.00 3.08
4818 7775 4.418973 AGTCATCGCTAGGTAGTCTACA 57.581 45.455 12.08 0.00 0.00 2.74
4848 7805 2.102252 AGAATGCCTCCTCTTTCTAGCG 59.898 50.000 0.00 0.00 31.32 4.26
4849 7806 1.781786 ATGCCTCCTCTTTCTAGCGA 58.218 50.000 0.00 0.00 0.00 4.93
4850 7807 0.818296 TGCCTCCTCTTTCTAGCGAC 59.182 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
697 3317 4.717313 GGGGTGGCGGTTGTCCTC 62.717 72.222 0.00 0.00 0.00 3.71
820 3440 1.270358 GCTGGCTGGGCTATGTAGTAC 60.270 57.143 0.00 0.00 0.00 2.73
889 3514 4.463879 CTGGTGGAGGGCGCTGAG 62.464 72.222 8.56 0.00 0.00 3.35
891 3516 4.767255 GACTGGTGGAGGGCGCTG 62.767 72.222 8.56 0.00 0.00 5.18
910 3540 3.866582 CTCGGGATGGAGTGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
949 3579 0.395862 TCTAGAGCTTGGCCGCTAGT 60.396 55.000 4.99 0.00 41.08 2.57
980 3610 0.835276 TATCCTCTCCTCGTCGGTGA 59.165 55.000 0.00 0.00 34.31 4.02
981 3611 1.676746 TTATCCTCTCCTCGTCGGTG 58.323 55.000 0.00 0.00 0.00 4.94
987 3626 1.548269 GCCTCCATTATCCTCTCCTCG 59.452 57.143 0.00 0.00 0.00 4.63
1333 3972 1.551883 GTACGGTACCTGGAACATGGT 59.448 52.381 10.90 0.00 41.38 3.55
1485 4187 1.760875 GGAGGATAGCGTGTCCCCA 60.761 63.158 2.06 0.00 36.36 4.96
1514 4216 7.962918 CGACAAAGTTACTCCCTTAATTTCATG 59.037 37.037 0.00 0.00 0.00 3.07
1515 4217 7.120726 CCGACAAAGTTACTCCCTTAATTTCAT 59.879 37.037 0.00 0.00 0.00 2.57
1524 4226 1.053424 TGCCGACAAAGTTACTCCCT 58.947 50.000 0.00 0.00 0.00 4.20
1533 4235 1.234615 AATGGACGGTGCCGACAAAG 61.235 55.000 18.16 0.00 42.83 2.77
1578 4280 5.895928 TGCTAATACAGTGACTCTAAGCTG 58.104 41.667 0.00 0.00 35.31 4.24
1580 4282 5.627367 CGATGCTAATACAGTGACTCTAAGC 59.373 44.000 0.00 0.00 0.00 3.09
1585 4287 4.504461 CCAACGATGCTAATACAGTGACTC 59.496 45.833 0.00 0.00 0.00 3.36
1604 4314 3.306156 GGTAGAACTGTCCAGAGTCCAAC 60.306 52.174 0.40 0.87 0.00 3.77
1622 4332 5.920840 GCAGCTTTAAAACCTGAAAAGGTAG 59.079 40.000 15.86 0.00 42.20 3.18
1625 4335 4.507756 GTGCAGCTTTAAAACCTGAAAAGG 59.492 41.667 15.86 0.00 32.14 3.11
1631 4341 4.229876 GCTAAGTGCAGCTTTAAAACCTG 58.770 43.478 9.90 9.90 42.31 4.00
1720 4430 8.997621 ACTGCTATTTCAAGAATAGACGTTTA 57.002 30.769 9.36 0.00 33.22 2.01
1735 4445 7.116948 ACAGCATACGATGAATACTGCTATTTC 59.883 37.037 0.00 0.00 37.84 2.17
1739 4449 5.453567 ACAGCATACGATGAATACTGCTA 57.546 39.130 0.00 0.00 37.84 3.49
1747 4457 6.345298 TGAGGATAAAACAGCATACGATGAA 58.655 36.000 0.00 0.00 31.28 2.57
1765 4475 8.585471 ATTCAAGATGTGTTTATGTTGAGGAT 57.415 30.769 0.00 0.00 40.17 3.24
1770 4480 8.991243 AATGGATTCAAGATGTGTTTATGTTG 57.009 30.769 0.00 0.00 33.86 3.33
1775 4485 6.127758 CCGGAAATGGATTCAAGATGTGTTTA 60.128 38.462 0.00 0.00 39.98 2.01
1825 4535 2.351738 GCTACGGCTTTTCTGCAAACAT 60.352 45.455 0.00 0.00 35.22 2.71
1828 4538 0.237235 CGCTACGGCTTTTCTGCAAA 59.763 50.000 0.00 0.00 36.09 3.68
1830 4540 2.677003 GCGCTACGGCTTTTCTGCA 61.677 57.895 0.00 0.00 36.09 4.41
1849 4575 6.428385 AGAAGGAAGAACAATAATGAAGCG 57.572 37.500 0.00 0.00 0.00 4.68
1883 4609 1.453155 CATCCACCACCAACTGCTAC 58.547 55.000 0.00 0.00 0.00 3.58
1884 4610 0.327924 CCATCCACCACCAACTGCTA 59.672 55.000 0.00 0.00 0.00 3.49
1885 4611 1.075482 CCATCCACCACCAACTGCT 59.925 57.895 0.00 0.00 0.00 4.24
1886 4612 1.978617 CCCATCCACCACCAACTGC 60.979 63.158 0.00 0.00 0.00 4.40
1887 4613 1.304381 CCCCATCCACCACCAACTG 60.304 63.158 0.00 0.00 0.00 3.16
1888 4614 1.368268 AACCCCATCCACCACCAACT 61.368 55.000 0.00 0.00 0.00 3.16
2045 4793 6.533819 TTTGTTGATAGTGGTACAAAGACG 57.466 37.500 0.00 0.00 44.16 4.18
2056 4804 5.509272 GCGACATTGTCATTTGTTGATAGTG 59.491 40.000 16.61 0.00 38.57 2.74
2057 4805 5.412594 AGCGACATTGTCATTTGTTGATAGT 59.587 36.000 16.61 0.00 36.54 2.12
2083 4831 2.073816 AGTGGGTCGTATTTTTCAGCG 58.926 47.619 0.00 0.00 0.00 5.18
2204 4956 3.815401 CCAATAATTTAGAGACTGGCCGG 59.185 47.826 11.02 11.02 0.00 6.13
2387 5151 1.383803 GAGATCCAGCCTGGGGAGT 60.384 63.158 11.68 0.00 38.32 3.85
2427 5191 5.411053 GCAATCTTATCTATCACTCCAAGGC 59.589 44.000 0.00 0.00 0.00 4.35
2466 5230 4.562757 GGCAACACACTCCATACTACAAGA 60.563 45.833 0.00 0.00 0.00 3.02
2520 5284 7.566760 TCAGAAAGACAAATTGAAGCAACTA 57.433 32.000 0.00 0.00 0.00 2.24
2521 5285 6.455360 TCAGAAAGACAAATTGAAGCAACT 57.545 33.333 0.00 0.00 0.00 3.16
2531 5295 4.410099 TGGCCTCAATCAGAAAGACAAAT 58.590 39.130 3.32 0.00 0.00 2.32
2634 5401 4.552355 TCCGTGACAAATGTGTACACTAG 58.448 43.478 25.60 14.80 38.41 2.57
2636 5403 3.462483 TCCGTGACAAATGTGTACACT 57.538 42.857 25.60 9.56 38.41 3.55
2637 5404 4.742438 ATTCCGTGACAAATGTGTACAC 57.258 40.909 19.36 19.36 38.41 2.90
2638 5405 4.816925 TGAATTCCGTGACAAATGTGTACA 59.183 37.500 2.27 0.00 38.41 2.90
2639 5406 5.049680 AGTGAATTCCGTGACAAATGTGTAC 60.050 40.000 2.27 0.00 38.41 2.90
2645 5412 5.411669 GGAGTTAGTGAATTCCGTGACAAAT 59.588 40.000 2.27 0.00 32.35 2.32
2649 5416 3.921677 TGGAGTTAGTGAATTCCGTGAC 58.078 45.455 2.27 0.00 42.93 3.67
2651 5418 5.238650 ACTTTTGGAGTTAGTGAATTCCGTG 59.761 40.000 2.27 0.00 42.93 4.94
2652 5419 5.374071 ACTTTTGGAGTTAGTGAATTCCGT 58.626 37.500 2.27 0.00 42.93 4.69
2653 5420 5.941948 ACTTTTGGAGTTAGTGAATTCCG 57.058 39.130 2.27 0.00 42.93 4.30
2654 5421 9.626045 CAATTACTTTTGGAGTTAGTGAATTCC 57.374 33.333 2.27 0.00 40.93 3.01
2667 5434 8.032451 GCTTAATAGCAACCAATTACTTTTGGA 58.968 33.333 10.05 0.00 46.09 3.53
2685 5452 4.466828 CCATTCAATTCGGCGCTTAATAG 58.533 43.478 7.64 0.00 0.00 1.73
2714 5625 2.484264 GGAAAGGATTGTCCACGTTGAG 59.516 50.000 0.00 0.00 39.61 3.02
2720 5631 3.610911 CCAGTAGGAAAGGATTGTCCAC 58.389 50.000 0.00 0.00 36.44 4.02
2727 5638 3.725634 ACAGTAGCCAGTAGGAAAGGAT 58.274 45.455 0.00 0.00 36.89 3.24
2728 5639 3.185880 ACAGTAGCCAGTAGGAAAGGA 57.814 47.619 0.00 0.00 36.89 3.36
2729 5640 3.983044 AACAGTAGCCAGTAGGAAAGG 57.017 47.619 0.00 0.00 36.89 3.11
2730 5641 5.046950 AGAGAAACAGTAGCCAGTAGGAAAG 60.047 44.000 0.00 0.00 36.89 2.62
2733 5644 3.764434 CAGAGAAACAGTAGCCAGTAGGA 59.236 47.826 0.00 0.00 36.89 2.94
2734 5645 3.511934 ACAGAGAAACAGTAGCCAGTAGG 59.488 47.826 0.00 0.00 38.23 3.18
2735 5646 4.461081 AGACAGAGAAACAGTAGCCAGTAG 59.539 45.833 0.00 0.00 0.00 2.57
2736 5647 4.218635 CAGACAGAGAAACAGTAGCCAGTA 59.781 45.833 0.00 0.00 0.00 2.74
2737 5648 3.006323 CAGACAGAGAAACAGTAGCCAGT 59.994 47.826 0.00 0.00 0.00 4.00
2738 5649 3.256879 TCAGACAGAGAAACAGTAGCCAG 59.743 47.826 0.00 0.00 0.00 4.85
2739 5650 3.230976 TCAGACAGAGAAACAGTAGCCA 58.769 45.455 0.00 0.00 0.00 4.75
2740 5651 3.944055 TCAGACAGAGAAACAGTAGCC 57.056 47.619 0.00 0.00 0.00 3.93
2741 5652 5.523916 TGTTTTCAGACAGAGAAACAGTAGC 59.476 40.000 0.00 0.00 34.92 3.58
2817 5733 7.952671 TGGGAATTCATGTACAGTAGATACTC 58.047 38.462 7.93 0.00 33.46 2.59
2818 5734 7.914427 TGGGAATTCATGTACAGTAGATACT 57.086 36.000 7.93 0.00 36.90 2.12
2819 5735 8.367911 TGATGGGAATTCATGTACAGTAGATAC 58.632 37.037 7.93 0.00 0.00 2.24
2820 5736 8.491045 TGATGGGAATTCATGTACAGTAGATA 57.509 34.615 7.93 0.00 0.00 1.98
2821 5737 7.379059 TGATGGGAATTCATGTACAGTAGAT 57.621 36.000 7.93 0.00 0.00 1.98
2822 5738 6.806668 TGATGGGAATTCATGTACAGTAGA 57.193 37.500 7.93 0.00 0.00 2.59
2823 5739 8.455903 AATTGATGGGAATTCATGTACAGTAG 57.544 34.615 7.93 0.00 0.00 2.57
2824 5740 8.052141 TGAATTGATGGGAATTCATGTACAGTA 58.948 33.333 7.93 0.00 43.98 2.74
2825 5741 6.891361 TGAATTGATGGGAATTCATGTACAGT 59.109 34.615 7.93 0.00 43.98 3.55
2905 5824 2.225068 ACCCATCTCAGTTAATCGCG 57.775 50.000 0.00 0.00 0.00 5.87
2908 5827 6.202954 CGACCATTAACCCATCTCAGTTAATC 59.797 42.308 5.41 0.00 43.75 1.75
2913 5832 2.838202 ACGACCATTAACCCATCTCAGT 59.162 45.455 0.00 0.00 0.00 3.41
2918 5842 2.014128 CACCACGACCATTAACCCATC 58.986 52.381 0.00 0.00 0.00 3.51
3004 5928 3.553437 CTCCGCCGTGAACGTCACT 62.553 63.158 13.65 0.00 44.85 3.41
3469 6393 2.100603 GTCTCGCCGTCCTTCTCG 59.899 66.667 0.00 0.00 0.00 4.04
3490 6414 1.669115 CACCTTGGTGTCCAGCTCG 60.669 63.158 11.39 0.00 33.81 5.03
3496 6420 0.602905 CCGAGTTCACCTTGGTGTCC 60.603 60.000 18.05 10.51 39.63 4.02
3517 6441 1.182667 TGATGGTGTAGGTGACCGAG 58.817 55.000 0.00 0.00 36.12 4.63
3891 6816 2.524569 AACAAGGGCCACGAATTTTG 57.475 45.000 6.18 1.55 0.00 2.44
3916 6841 1.275471 GCCCTTCTTGTTTTTCGCGC 61.275 55.000 0.00 0.00 0.00 6.86
3926 6851 4.748277 ATGAATGAAATGGCCCTTCTTG 57.252 40.909 14.06 0.00 0.00 3.02
3999 6924 8.396390 CAAAATGATCATCACAACAAAAACCAA 58.604 29.630 9.06 0.00 0.00 3.67
4000 6925 7.551974 ACAAAATGATCATCACAACAAAAACCA 59.448 29.630 9.06 0.00 0.00 3.67
4084 7015 3.030291 ACTCTAAGCTCCAGGATGTCTG 58.970 50.000 0.00 0.00 43.00 3.51
4119 7050 6.071278 AGGCAAAAGTAGAGTGGTAGAACTAG 60.071 42.308 0.00 0.00 0.00 2.57
4157 7092 1.671328 GCTAGGGAAAGTTCGGCATTC 59.329 52.381 0.00 0.00 0.00 2.67
4158 7093 1.751437 GCTAGGGAAAGTTCGGCATT 58.249 50.000 0.00 0.00 0.00 3.56
4162 7097 0.531200 AGTCGCTAGGGAAAGTTCGG 59.469 55.000 11.59 0.00 0.00 4.30
4210 7145 4.570772 AGTTAAATCAATCGATCACACGGG 59.429 41.667 0.00 0.00 0.00 5.28
4213 7148 7.023575 AGCAAAGTTAAATCAATCGATCACAC 58.976 34.615 0.00 0.00 0.00 3.82
4324 7259 2.043248 ATGAGGTAGACCGGCCGT 60.043 61.111 26.12 12.57 42.08 5.68
4405 7342 7.012989 ACTGTCACACAAACCCTAATAAAACTC 59.987 37.037 0.00 0.00 0.00 3.01
4425 7362 2.250924 TCATCTTCAGAGCCACTGTCA 58.749 47.619 8.09 0.00 45.86 3.58
4426 7363 3.325293 TTCATCTTCAGAGCCACTGTC 57.675 47.619 8.09 0.00 45.86 3.51
4427 7364 3.777106 TTTCATCTTCAGAGCCACTGT 57.223 42.857 8.09 0.00 45.86 3.55
4428 7365 6.111382 TCTTATTTCATCTTCAGAGCCACTG 58.889 40.000 2.58 2.58 46.97 3.66
4429 7366 6.305272 TCTTATTTCATCTTCAGAGCCACT 57.695 37.500 0.00 0.00 0.00 4.00
4452 7409 6.348540 GCACCACTGAAATAGACGAGAAAAAT 60.349 38.462 0.00 0.00 0.00 1.82
4455 7412 3.994392 GCACCACTGAAATAGACGAGAAA 59.006 43.478 0.00 0.00 0.00 2.52
4457 7414 2.826128 AGCACCACTGAAATAGACGAGA 59.174 45.455 0.00 0.00 0.00 4.04
4468 7425 1.684450 TGACGTTAGAAGCACCACTGA 59.316 47.619 0.00 0.00 0.00 3.41
4493 7450 1.141053 AGACAAACTTTCGCAGACCCT 59.859 47.619 0.00 0.00 34.32 4.34
4503 7460 7.148239 CCATAAGATTAGCCGAAGACAAACTTT 60.148 37.037 0.00 0.00 39.13 2.66
4505 7462 5.817816 CCATAAGATTAGCCGAAGACAAACT 59.182 40.000 0.00 0.00 0.00 2.66
4526 7483 8.650143 ATTTCGATAATATTAGCCAAACCCAT 57.350 30.769 5.79 0.00 0.00 4.00
4531 7488 7.658167 TGACCGATTTCGATAATATTAGCCAAA 59.342 33.333 6.07 6.07 43.02 3.28
4532 7489 7.156000 TGACCGATTTCGATAATATTAGCCAA 58.844 34.615 5.19 0.00 43.02 4.52
4533 7490 6.693466 TGACCGATTTCGATAATATTAGCCA 58.307 36.000 5.19 0.00 43.02 4.75
4534 7491 6.237861 GCTGACCGATTTCGATAATATTAGCC 60.238 42.308 5.19 0.00 43.02 3.93
4535 7492 6.506513 CGCTGACCGATTTCGATAATATTAGC 60.507 42.308 0.67 0.43 43.02 3.09
4536 7493 6.527023 ACGCTGACCGATTTCGATAATATTAG 59.473 38.462 0.67 0.00 43.02 1.73
4537 7494 6.384224 ACGCTGACCGATTTCGATAATATTA 58.616 36.000 0.67 0.00 43.02 0.98
4538 7495 5.227908 ACGCTGACCGATTTCGATAATATT 58.772 37.500 0.67 0.00 43.02 1.28
4539 7496 4.806330 ACGCTGACCGATTTCGATAATAT 58.194 39.130 0.67 0.00 43.02 1.28
4540 7497 4.233123 ACGCTGACCGATTTCGATAATA 57.767 40.909 0.67 0.00 43.02 0.98
4541 7498 3.093717 ACGCTGACCGATTTCGATAAT 57.906 42.857 0.67 0.00 43.02 1.28
4542 7499 2.572191 ACGCTGACCGATTTCGATAA 57.428 45.000 0.67 0.00 43.02 1.75
4543 7500 2.572191 AACGCTGACCGATTTCGATA 57.428 45.000 0.67 0.00 43.02 2.92
4544 7501 1.393539 CAAACGCTGACCGATTTCGAT 59.606 47.619 0.67 0.00 43.02 3.59
4545 7502 0.787787 CAAACGCTGACCGATTTCGA 59.212 50.000 0.67 0.00 43.02 3.71
4546 7503 0.511221 ACAAACGCTGACCGATTTCG 59.489 50.000 0.00 0.00 41.02 3.46
4547 7504 1.798813 AGACAAACGCTGACCGATTTC 59.201 47.619 0.00 0.00 41.02 2.17
4548 7505 1.878953 AGACAAACGCTGACCGATTT 58.121 45.000 0.00 0.00 41.02 2.17
4559 7516 1.126113 CGGATCCACGAAAGACAAACG 59.874 52.381 13.41 0.00 35.47 3.60
4612 7569 3.374058 CACGTAGATCAAATGGGTCCAAC 59.626 47.826 0.00 0.00 0.00 3.77
4619 7576 4.500837 CGAAGAGACACGTAGATCAAATGG 59.499 45.833 0.00 0.00 0.00 3.16
4623 7580 3.749609 TGACGAAGAGACACGTAGATCAA 59.250 43.478 0.00 0.00 42.74 2.57
4656 7613 1.227999 ATGCACCAGAACGACAACCG 61.228 55.000 0.00 0.00 45.44 4.44
4663 7620 1.742761 AGGATCAATGCACCAGAACG 58.257 50.000 0.00 0.00 0.00 3.95
4667 7624 4.914983 ACCATATAGGATCAATGCACCAG 58.085 43.478 0.00 0.00 41.22 4.00
4721 7678 4.150980 CACGGAGTCGCACAAACTTTATTA 59.849 41.667 0.00 0.00 41.61 0.98
4774 7731 4.075763 CAAGAATTGGAGCAAGTCGAAG 57.924 45.455 0.00 0.00 43.94 3.79
4810 7767 5.163405 GGCATTCTCCAATGTCTGTAGACTA 60.163 44.000 12.75 1.05 44.99 2.59
4831 7788 0.818296 GTCGCTAGAAAGAGGAGGCA 59.182 55.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.