Multiple sequence alignment - TraesCS5A01G280000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G280000 chr5A 100.000 3527 0 0 1 3527 489630201 489633727 0.000000e+00 6514.0
1 TraesCS5A01G280000 chr5D 91.369 1483 88 17 520 1990 386941062 386942516 0.000000e+00 1993.0
2 TraesCS5A01G280000 chr5D 94.111 832 42 6 2050 2880 386942683 386943508 0.000000e+00 1258.0
3 TraesCS5A01G280000 chr5D 87.825 616 67 8 2887 3499 475252318 475251708 0.000000e+00 715.0
4 TraesCS5A01G280000 chr5D 87.363 182 9 5 286 461 386940722 386940895 2.780000e-46 196.0
5 TraesCS5A01G280000 chr5D 94.203 69 4 0 1988 2056 386942595 386942663 4.820000e-19 106.0
6 TraesCS5A01G280000 chr5B 91.507 1307 65 17 296 1569 465011979 465013272 0.000000e+00 1757.0
7 TraesCS5A01G280000 chr5B 93.013 458 21 4 1984 2441 465013680 465014126 0.000000e+00 658.0
8 TraesCS5A01G280000 chr5B 91.928 446 32 2 2436 2880 465019936 465020378 3.870000e-174 621.0
9 TraesCS5A01G280000 chr2A 88.594 640 67 3 2887 3525 693535000 693534366 0.000000e+00 773.0
10 TraesCS5A01G280000 chr2A 87.017 647 67 14 2885 3527 504764850 504765483 0.000000e+00 713.0
11 TraesCS5A01G280000 chr2A 92.727 55 3 1 223 276 713447724 713447778 1.050000e-10 78.7
12 TraesCS5A01G280000 chr3D 88.264 622 65 8 2884 3501 318014367 318014984 0.000000e+00 737.0
13 TraesCS5A01G280000 chr6D 87.326 647 74 8 2885 3527 241777549 241778191 0.000000e+00 734.0
14 TraesCS5A01G280000 chr6D 88.045 619 69 5 2888 3503 357614617 357614001 0.000000e+00 728.0
15 TraesCS5A01G280000 chr6D 85.984 635 73 12 2873 3500 233288693 233288068 0.000000e+00 665.0
16 TraesCS5A01G280000 chr6D 73.711 194 45 6 86 276 77694265 77694455 1.760000e-08 71.3
17 TraesCS5A01G280000 chr6A 86.977 645 82 2 2884 3527 432777020 432777663 0.000000e+00 725.0
18 TraesCS5A01G280000 chr7A 86.271 641 84 4 2885 3524 399101742 399101105 0.000000e+00 693.0
19 TraesCS5A01G280000 chr7D 94.946 277 11 2 1 277 412586418 412586145 6.990000e-117 431.0
20 TraesCS5A01G280000 chr1B 94.585 277 14 1 1 277 8157035 8156760 9.050000e-116 427.0
21 TraesCS5A01G280000 chr2B 94.224 277 14 2 1 277 64322692 64322966 4.210000e-114 422.0
22 TraesCS5A01G280000 chr3B 88.255 298 29 6 1 296 787804540 787804247 5.600000e-93 351.0
23 TraesCS5A01G280000 chr3A 77.320 194 42 2 84 276 274755247 274755055 2.880000e-21 113.0
24 TraesCS5A01G280000 chr7B 78.824 170 33 3 110 277 71308324 71308492 1.030000e-20 111.0
25 TraesCS5A01G280000 chr6B 90.741 54 4 1 224 276 439056061 439056114 1.760000e-08 71.3
26 TraesCS5A01G280000 chr2D 73.711 194 45 6 86 276 57124224 57124414 1.760000e-08 71.3
27 TraesCS5A01G280000 chr4B 92.857 42 2 1 235 275 195454035 195453994 3.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G280000 chr5A 489630201 489633727 3526 False 6514.00 6514 100.0000 1 3527 1 chr5A.!!$F1 3526
1 TraesCS5A01G280000 chr5D 386940722 386943508 2786 False 888.25 1993 91.7615 286 2880 4 chr5D.!!$F1 2594
2 TraesCS5A01G280000 chr5D 475251708 475252318 610 True 715.00 715 87.8250 2887 3499 1 chr5D.!!$R1 612
3 TraesCS5A01G280000 chr5B 465011979 465014126 2147 False 1207.50 1757 92.2600 296 2441 2 chr5B.!!$F2 2145
4 TraesCS5A01G280000 chr2A 693534366 693535000 634 True 773.00 773 88.5940 2887 3525 1 chr2A.!!$R1 638
5 TraesCS5A01G280000 chr2A 504764850 504765483 633 False 713.00 713 87.0170 2885 3527 1 chr2A.!!$F1 642
6 TraesCS5A01G280000 chr3D 318014367 318014984 617 False 737.00 737 88.2640 2884 3501 1 chr3D.!!$F1 617
7 TraesCS5A01G280000 chr6D 241777549 241778191 642 False 734.00 734 87.3260 2885 3527 1 chr6D.!!$F2 642
8 TraesCS5A01G280000 chr6D 357614001 357614617 616 True 728.00 728 88.0450 2888 3503 1 chr6D.!!$R2 615
9 TraesCS5A01G280000 chr6D 233288068 233288693 625 True 665.00 665 85.9840 2873 3500 1 chr6D.!!$R1 627
10 TraesCS5A01G280000 chr6A 432777020 432777663 643 False 725.00 725 86.9770 2884 3527 1 chr6A.!!$F1 643
11 TraesCS5A01G280000 chr7A 399101105 399101742 637 True 693.00 693 86.2710 2885 3524 1 chr7A.!!$R1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.030638 GAGTCCATCTGAGCTCGAGC 59.969 60.0 30.01 30.01 42.49 5.03 F
876 998 0.173708 GCCTCACCTTCTACCTCGTG 59.826 60.0 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1588 0.035458 CCCCACCAGTCTGTGAGTTC 59.965 60.0 0.0 0.0 38.55 3.01 R
2763 3007 0.599204 ACATGACCGACCGTGTGTTC 60.599 55.0 0.0 0.0 35.18 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.337578 AATAGCCGTGCAAAATAAATGGT 57.662 34.783 0.00 0.00 0.00 3.55
23 24 3.676291 AGCCGTGCAAAATAAATGGTT 57.324 38.095 0.00 0.00 0.00 3.67
24 25 3.324993 AGCCGTGCAAAATAAATGGTTG 58.675 40.909 0.00 0.00 0.00 3.77
25 26 2.414825 GCCGTGCAAAATAAATGGTTGG 59.585 45.455 0.00 0.00 0.00 3.77
26 27 2.999355 CCGTGCAAAATAAATGGTTGGG 59.001 45.455 0.00 0.00 0.00 4.12
27 28 2.999355 CGTGCAAAATAAATGGTTGGGG 59.001 45.455 0.00 0.00 0.00 4.96
28 29 3.556004 CGTGCAAAATAAATGGTTGGGGT 60.556 43.478 0.00 0.00 0.00 4.95
29 30 4.393834 GTGCAAAATAAATGGTTGGGGTT 58.606 39.130 0.00 0.00 0.00 4.11
30 31 4.215185 GTGCAAAATAAATGGTTGGGGTTG 59.785 41.667 0.00 0.00 0.00 3.77
31 32 3.755905 GCAAAATAAATGGTTGGGGTTGG 59.244 43.478 0.00 0.00 0.00 3.77
32 33 4.505742 GCAAAATAAATGGTTGGGGTTGGA 60.506 41.667 0.00 0.00 0.00 3.53
33 34 4.901197 AAATAAATGGTTGGGGTTGGAC 57.099 40.909 0.00 0.00 0.00 4.02
34 35 1.912417 TAAATGGTTGGGGTTGGACG 58.088 50.000 0.00 0.00 0.00 4.79
35 36 1.468506 AAATGGTTGGGGTTGGACGC 61.469 55.000 0.00 0.00 0.00 5.19
54 55 3.557824 CGCCGTCTGGTGGTTAAC 58.442 61.111 0.00 0.00 42.32 2.01
55 56 2.377310 CGCCGTCTGGTGGTTAACG 61.377 63.158 0.00 0.00 42.32 3.18
56 57 1.301165 GCCGTCTGGTGGTTAACGT 60.301 57.895 0.00 0.00 37.67 3.99
57 58 1.287041 GCCGTCTGGTGGTTAACGTC 61.287 60.000 0.00 0.00 37.67 4.34
58 59 0.316204 CCGTCTGGTGGTTAACGTCT 59.684 55.000 0.00 0.00 33.45 4.18
59 60 1.415374 CGTCTGGTGGTTAACGTCTG 58.585 55.000 0.00 0.00 0.00 3.51
60 61 1.001048 CGTCTGGTGGTTAACGTCTGA 60.001 52.381 0.00 0.00 0.00 3.27
61 62 2.673833 GTCTGGTGGTTAACGTCTGAG 58.326 52.381 0.00 0.00 0.00 3.35
62 63 1.000506 TCTGGTGGTTAACGTCTGAGC 59.999 52.381 0.00 0.00 0.00 4.26
63 64 0.034337 TGGTGGTTAACGTCTGAGCC 59.966 55.000 0.00 0.00 0.00 4.70
64 65 1.012486 GGTGGTTAACGTCTGAGCCG 61.012 60.000 0.00 0.00 0.00 5.52
65 66 0.319297 GTGGTTAACGTCTGAGCCGT 60.319 55.000 0.00 0.00 40.92 5.68
66 67 0.319211 TGGTTAACGTCTGAGCCGTG 60.319 55.000 0.00 0.00 38.77 4.94
67 68 1.012486 GGTTAACGTCTGAGCCGTGG 61.012 60.000 0.00 0.00 38.77 4.94
68 69 1.373748 TTAACGTCTGAGCCGTGGC 60.374 57.895 1.67 1.67 38.77 5.01
78 79 4.012895 GCCGTGGCTCACAACGTG 62.013 66.667 2.98 0.00 38.26 4.49
79 80 2.279851 CCGTGGCTCACAACGTGA 60.280 61.111 0.00 0.00 40.50 4.35
80 81 1.667830 CCGTGGCTCACAACGTGAT 60.668 57.895 0.00 0.00 41.94 3.06
81 82 1.492873 CGTGGCTCACAACGTGATG 59.507 57.895 0.00 0.00 41.94 3.07
82 83 1.868997 GTGGCTCACAACGTGATGG 59.131 57.895 0.00 0.00 41.94 3.51
83 84 1.965930 TGGCTCACAACGTGATGGC 60.966 57.895 0.00 5.48 41.94 4.40
84 85 2.690778 GGCTCACAACGTGATGGCC 61.691 63.158 10.50 10.50 43.19 5.36
85 86 2.690778 GCTCACAACGTGATGGCCC 61.691 63.158 0.00 0.00 41.94 5.80
86 87 1.302431 CTCACAACGTGATGGCCCA 60.302 57.895 0.00 0.00 41.94 5.36
87 88 0.677731 CTCACAACGTGATGGCCCAT 60.678 55.000 0.00 0.00 41.94 4.00
88 89 0.676466 TCACAACGTGATGGCCCATC 60.676 55.000 17.13 17.13 37.67 3.51
89 90 0.677731 CACAACGTGATGGCCCATCT 60.678 55.000 23.69 1.50 41.06 2.90
90 91 0.677731 ACAACGTGATGGCCCATCTG 60.678 55.000 23.69 17.85 41.06 2.90
91 92 0.392863 CAACGTGATGGCCCATCTGA 60.393 55.000 23.69 2.28 41.06 3.27
92 93 0.548031 AACGTGATGGCCCATCTGAT 59.452 50.000 23.69 9.05 41.06 2.90
93 94 0.107456 ACGTGATGGCCCATCTGATC 59.893 55.000 23.69 10.91 41.06 2.92
94 95 0.604780 CGTGATGGCCCATCTGATCC 60.605 60.000 23.69 6.57 41.06 3.36
95 96 0.604780 GTGATGGCCCATCTGATCCG 60.605 60.000 23.69 0.00 41.06 4.18
96 97 1.673665 GATGGCCCATCTGATCCGC 60.674 63.158 16.71 0.00 37.82 5.54
97 98 3.201707 ATGGCCCATCTGATCCGCC 62.202 63.158 14.73 14.73 40.16 6.13
98 99 4.996434 GGCCCATCTGATCCGCCG 62.996 72.222 8.35 0.00 0.00 6.46
100 101 3.933722 CCCATCTGATCCGCCGCT 61.934 66.667 0.00 0.00 0.00 5.52
101 102 2.664185 CCATCTGATCCGCCGCTG 60.664 66.667 0.00 0.00 0.00 5.18
102 103 3.344215 CATCTGATCCGCCGCTGC 61.344 66.667 0.00 0.00 0.00 5.25
115 116 4.500116 GCTGCGAGGAGGACGGAC 62.500 72.222 0.00 0.00 0.00 4.79
116 117 4.180946 CTGCGAGGAGGACGGACG 62.181 72.222 0.00 0.00 0.00 4.79
118 119 4.176851 GCGAGGAGGACGGACGTC 62.177 72.222 15.90 15.90 43.87 4.34
119 120 3.862402 CGAGGAGGACGGACGTCG 61.862 72.222 17.35 7.64 45.41 5.12
120 121 4.176851 GAGGAGGACGGACGTCGC 62.177 72.222 17.35 12.06 45.41 5.19
122 123 3.823330 GGAGGACGGACGTCGCAT 61.823 66.667 17.35 7.09 45.41 4.73
123 124 2.181021 GAGGACGGACGTCGCATT 59.819 61.111 17.35 4.49 45.41 3.56
124 125 1.430632 GAGGACGGACGTCGCATTA 59.569 57.895 17.35 0.00 45.41 1.90
125 126 0.179156 GAGGACGGACGTCGCATTAA 60.179 55.000 17.35 0.00 45.41 1.40
126 127 0.244450 AGGACGGACGTCGCATTAAA 59.756 50.000 17.35 0.00 45.41 1.52
127 128 1.134907 AGGACGGACGTCGCATTAAAT 60.135 47.619 17.35 0.00 45.41 1.40
128 129 2.099592 AGGACGGACGTCGCATTAAATA 59.900 45.455 17.35 0.00 45.41 1.40
129 130 2.470257 GGACGGACGTCGCATTAAATAG 59.530 50.000 17.35 0.00 45.41 1.73
130 131 1.856597 ACGGACGTCGCATTAAATAGC 59.143 47.619 9.92 0.00 43.89 2.97
131 132 1.191647 CGGACGTCGCATTAAATAGCC 59.808 52.381 9.92 0.00 0.00 3.93
132 133 1.191647 GGACGTCGCATTAAATAGCCG 59.808 52.381 9.92 0.00 0.00 5.52
133 134 1.856597 GACGTCGCATTAAATAGCCGT 59.143 47.619 0.00 0.00 32.76 5.68
134 135 3.044986 GACGTCGCATTAAATAGCCGTA 58.955 45.455 0.00 0.00 30.82 4.02
135 136 3.047796 ACGTCGCATTAAATAGCCGTAG 58.952 45.455 0.00 0.00 29.32 3.51
136 137 2.160013 CGTCGCATTAAATAGCCGTAGC 60.160 50.000 0.00 0.00 40.32 3.58
137 138 2.798283 GTCGCATTAAATAGCCGTAGCA 59.202 45.455 0.00 0.00 43.56 3.49
138 139 3.057019 TCGCATTAAATAGCCGTAGCAG 58.943 45.455 0.00 0.00 43.56 4.24
139 140 3.057019 CGCATTAAATAGCCGTAGCAGA 58.943 45.455 0.00 0.00 43.56 4.26
140 141 3.121944 CGCATTAAATAGCCGTAGCAGAG 59.878 47.826 0.00 0.00 43.56 3.35
141 142 4.058817 GCATTAAATAGCCGTAGCAGAGT 58.941 43.478 0.00 0.00 43.56 3.24
142 143 4.084328 GCATTAAATAGCCGTAGCAGAGTG 60.084 45.833 0.00 0.00 43.56 3.51
143 144 2.604046 AAATAGCCGTAGCAGAGTGG 57.396 50.000 0.00 0.00 43.56 4.00
144 145 1.776662 AATAGCCGTAGCAGAGTGGA 58.223 50.000 0.00 0.00 43.56 4.02
145 146 1.033574 ATAGCCGTAGCAGAGTGGAC 58.966 55.000 0.00 0.00 43.56 4.02
146 147 1.035932 TAGCCGTAGCAGAGTGGACC 61.036 60.000 0.00 0.00 43.56 4.46
147 148 2.646175 GCCGTAGCAGAGTGGACCA 61.646 63.158 0.00 0.00 39.53 4.02
148 149 1.513158 CCGTAGCAGAGTGGACCAG 59.487 63.158 0.00 0.00 0.00 4.00
149 150 1.513158 CGTAGCAGAGTGGACCAGG 59.487 63.158 0.00 0.00 0.00 4.45
150 151 1.901085 GTAGCAGAGTGGACCAGGG 59.099 63.158 0.00 0.00 0.00 4.45
151 152 0.905337 GTAGCAGAGTGGACCAGGGT 60.905 60.000 0.00 0.00 0.00 4.34
152 153 0.614979 TAGCAGAGTGGACCAGGGTC 60.615 60.000 10.03 10.03 43.87 4.46
153 154 1.915769 GCAGAGTGGACCAGGGTCT 60.916 63.158 17.41 0.00 44.04 3.85
154 155 1.978473 CAGAGTGGACCAGGGTCTG 59.022 63.158 17.41 12.05 44.04 3.51
178 179 4.965119 AAAAAGGCGTTCATACATCTCC 57.035 40.909 0.00 0.00 0.00 3.71
179 180 3.627395 AAAGGCGTTCATACATCTCCA 57.373 42.857 0.00 0.00 0.00 3.86
180 181 3.627395 AAGGCGTTCATACATCTCCAA 57.373 42.857 0.00 0.00 0.00 3.53
181 182 3.627395 AGGCGTTCATACATCTCCAAA 57.373 42.857 0.00 0.00 0.00 3.28
182 183 4.156455 AGGCGTTCATACATCTCCAAAT 57.844 40.909 0.00 0.00 0.00 2.32
183 184 5.290493 AGGCGTTCATACATCTCCAAATA 57.710 39.130 0.00 0.00 0.00 1.40
184 185 5.057149 AGGCGTTCATACATCTCCAAATAC 58.943 41.667 0.00 0.00 0.00 1.89
185 186 4.814234 GGCGTTCATACATCTCCAAATACA 59.186 41.667 0.00 0.00 0.00 2.29
186 187 5.470098 GGCGTTCATACATCTCCAAATACAT 59.530 40.000 0.00 0.00 0.00 2.29
187 188 6.365839 GCGTTCATACATCTCCAAATACATG 58.634 40.000 0.00 0.00 0.00 3.21
188 189 6.566564 GCGTTCATACATCTCCAAATACATGG 60.567 42.308 0.00 0.00 42.12 3.66
189 190 6.483307 CGTTCATACATCTCCAAATACATGGT 59.517 38.462 0.00 0.00 41.46 3.55
190 191 7.655732 CGTTCATACATCTCCAAATACATGGTA 59.344 37.037 0.00 0.00 41.46 3.25
191 192 9.337396 GTTCATACATCTCCAAATACATGGTAA 57.663 33.333 0.00 0.00 41.46 2.85
192 193 9.913310 TTCATACATCTCCAAATACATGGTAAA 57.087 29.630 0.00 0.00 41.46 2.01
193 194 9.913310 TCATACATCTCCAAATACATGGTAAAA 57.087 29.630 0.00 0.00 41.46 1.52
201 202 9.762933 CTCCAAATACATGGTAAAATAATTGGG 57.237 33.333 0.00 0.00 41.46 4.12
202 203 8.709308 TCCAAATACATGGTAAAATAATTGGGG 58.291 33.333 0.00 0.00 41.46 4.96
203 204 8.490311 CCAAATACATGGTAAAATAATTGGGGT 58.510 33.333 0.00 0.00 35.65 4.95
206 207 9.945633 AATACATGGTAAAATAATTGGGGTAGT 57.054 29.630 0.00 0.00 0.00 2.73
207 208 7.654022 ACATGGTAAAATAATTGGGGTAGTG 57.346 36.000 0.00 0.00 0.00 2.74
208 209 6.097696 ACATGGTAAAATAATTGGGGTAGTGC 59.902 38.462 0.00 0.00 0.00 4.40
209 210 5.833340 TGGTAAAATAATTGGGGTAGTGCT 58.167 37.500 0.00 0.00 0.00 4.40
210 211 6.257586 TGGTAAAATAATTGGGGTAGTGCTT 58.742 36.000 0.00 0.00 0.00 3.91
211 212 7.411808 TGGTAAAATAATTGGGGTAGTGCTTA 58.588 34.615 0.00 0.00 0.00 3.09
212 213 8.062536 TGGTAAAATAATTGGGGTAGTGCTTAT 58.937 33.333 0.00 0.00 0.00 1.73
213 214 8.573885 GGTAAAATAATTGGGGTAGTGCTTATC 58.426 37.037 0.00 0.00 0.00 1.75
214 215 9.350951 GTAAAATAATTGGGGTAGTGCTTATCT 57.649 33.333 0.00 0.00 0.00 1.98
215 216 8.838649 AAAATAATTGGGGTAGTGCTTATCTT 57.161 30.769 0.00 0.00 0.00 2.40
216 217 8.838649 AAATAATTGGGGTAGTGCTTATCTTT 57.161 30.769 0.00 0.00 0.00 2.52
217 218 7.823745 ATAATTGGGGTAGTGCTTATCTTTG 57.176 36.000 0.00 0.00 0.00 2.77
218 219 2.999331 TGGGGTAGTGCTTATCTTTGC 58.001 47.619 0.00 0.00 0.00 3.68
219 220 1.940613 GGGGTAGTGCTTATCTTTGCG 59.059 52.381 0.00 0.00 0.00 4.85
220 221 1.330829 GGGTAGTGCTTATCTTTGCGC 59.669 52.381 0.00 0.00 39.68 6.09
221 222 1.330829 GGTAGTGCTTATCTTTGCGCC 59.669 52.381 4.18 0.00 40.18 6.53
222 223 2.006888 GTAGTGCTTATCTTTGCGCCA 58.993 47.619 4.18 0.00 40.18 5.69
223 224 1.089920 AGTGCTTATCTTTGCGCCAG 58.910 50.000 4.18 0.00 40.18 4.85
224 225 0.524180 GTGCTTATCTTTGCGCCAGC 60.524 55.000 4.18 1.42 45.41 4.85
225 226 0.677731 TGCTTATCTTTGCGCCAGCT 60.678 50.000 4.18 0.00 45.42 4.24
226 227 0.248377 GCTTATCTTTGCGCCAGCTG 60.248 55.000 6.78 6.78 45.42 4.24
227 228 1.372582 CTTATCTTTGCGCCAGCTGA 58.627 50.000 17.39 0.00 45.42 4.26
228 229 1.063174 CTTATCTTTGCGCCAGCTGAC 59.937 52.381 17.39 1.25 45.42 3.51
229 230 1.083806 TATCTTTGCGCCAGCTGACG 61.084 55.000 18.82 18.82 45.42 4.35
230 231 4.093952 CTTTGCGCCAGCTGACGG 62.094 66.667 23.99 9.23 45.42 4.79
243 244 3.485947 GCTGACGGCTGAGATATAGAG 57.514 52.381 0.00 0.00 38.06 2.43
244 245 2.817258 GCTGACGGCTGAGATATAGAGT 59.183 50.000 0.00 0.00 38.06 3.24
245 246 3.119990 GCTGACGGCTGAGATATAGAGTC 60.120 52.174 0.00 0.00 38.06 3.36
246 247 3.413327 TGACGGCTGAGATATAGAGTCC 58.587 50.000 0.00 0.00 0.00 3.85
247 248 3.181443 TGACGGCTGAGATATAGAGTCCA 60.181 47.826 0.00 0.00 0.00 4.02
248 249 4.013728 GACGGCTGAGATATAGAGTCCAT 58.986 47.826 0.00 0.00 0.00 3.41
249 250 4.013728 ACGGCTGAGATATAGAGTCCATC 58.986 47.826 0.00 0.00 0.00 3.51
250 251 4.263727 ACGGCTGAGATATAGAGTCCATCT 60.264 45.833 0.00 0.37 42.47 2.90
251 252 4.096231 CGGCTGAGATATAGAGTCCATCTG 59.904 50.000 4.65 0.00 39.20 2.90
252 253 5.260424 GGCTGAGATATAGAGTCCATCTGA 58.740 45.833 4.65 0.00 39.20 3.27
253 254 5.357878 GGCTGAGATATAGAGTCCATCTGAG 59.642 48.000 8.29 8.29 39.20 3.35
254 255 5.163622 GCTGAGATATAGAGTCCATCTGAGC 60.164 48.000 16.84 16.84 44.71 4.26
255 256 6.138391 TGAGATATAGAGTCCATCTGAGCT 57.862 41.667 4.65 0.00 39.20 4.09
256 257 6.179756 TGAGATATAGAGTCCATCTGAGCTC 58.820 44.000 6.82 6.82 39.20 4.09
257 258 5.185454 AGATATAGAGTCCATCTGAGCTCG 58.815 45.833 9.64 4.19 39.20 5.03
258 259 3.500448 ATAGAGTCCATCTGAGCTCGA 57.500 47.619 9.64 9.86 39.20 4.04
259 260 1.679139 AGAGTCCATCTGAGCTCGAG 58.321 55.000 8.45 8.45 36.69 4.04
260 261 0.030638 GAGTCCATCTGAGCTCGAGC 59.969 60.000 30.01 30.01 42.49 5.03
261 262 5.327094 TAGAGTCCATCTGAGCTCGAGCT 62.327 52.174 38.87 38.87 46.47 4.09
273 274 3.708563 GCTCGAGCTCAGAATAGACTT 57.291 47.619 29.88 0.00 38.21 3.01
274 275 4.040445 GCTCGAGCTCAGAATAGACTTT 57.960 45.455 29.88 0.00 38.21 2.66
275 276 4.041723 GCTCGAGCTCAGAATAGACTTTC 58.958 47.826 29.88 0.00 38.21 2.62
276 277 4.606961 CTCGAGCTCAGAATAGACTTTCC 58.393 47.826 15.40 0.00 0.00 3.13
277 278 3.381908 TCGAGCTCAGAATAGACTTTCCC 59.618 47.826 15.40 0.00 0.00 3.97
278 279 3.131223 CGAGCTCAGAATAGACTTTCCCA 59.869 47.826 15.40 0.00 0.00 4.37
279 280 4.202202 CGAGCTCAGAATAGACTTTCCCAT 60.202 45.833 15.40 0.00 0.00 4.00
280 281 5.010112 CGAGCTCAGAATAGACTTTCCCATA 59.990 44.000 15.40 0.00 0.00 2.74
281 282 6.418057 AGCTCAGAATAGACTTTCCCATAG 57.582 41.667 0.00 0.00 0.00 2.23
282 283 5.306678 AGCTCAGAATAGACTTTCCCATAGG 59.693 44.000 0.00 0.00 0.00 2.57
283 284 5.071115 GCTCAGAATAGACTTTCCCATAGGT 59.929 44.000 0.00 0.00 0.00 3.08
284 285 6.408662 GCTCAGAATAGACTTTCCCATAGGTT 60.409 42.308 0.00 0.00 0.00 3.50
305 306 3.006940 TGGTTGCTATTTGGCGACTTAG 58.993 45.455 6.29 0.00 43.85 2.18
359 364 0.964860 TGGTTCGGACGGATCGGTTA 60.965 55.000 7.41 0.00 0.00 2.85
370 375 0.659957 GATCGGTTACGTAGTCGGCT 59.340 55.000 15.95 0.00 43.93 5.52
371 376 0.379669 ATCGGTTACGTAGTCGGCTG 59.620 55.000 15.95 0.00 43.93 4.85
372 377 1.226491 CGGTTACGTAGTCGGCTGG 60.226 63.158 0.00 0.00 43.93 4.85
373 378 1.140375 GGTTACGTAGTCGGCTGGG 59.860 63.158 0.00 0.00 43.93 4.45
374 379 1.140375 GTTACGTAGTCGGCTGGGG 59.860 63.158 0.00 0.00 43.93 4.96
375 380 1.304381 TTACGTAGTCGGCTGGGGT 60.304 57.895 0.00 0.00 43.93 4.95
376 381 1.315257 TTACGTAGTCGGCTGGGGTC 61.315 60.000 0.00 0.00 43.93 4.46
425 430 5.659440 AACGGATTTGAACCTGCAAATAT 57.341 34.783 0.00 0.00 45.63 1.28
435 442 1.685803 CCTGCAAATATGACTGCCCCA 60.686 52.381 0.00 0.00 37.79 4.96
446 453 2.358125 TGCCCCAATCGTGTCACG 60.358 61.111 19.38 19.38 44.19 4.35
450 457 3.410516 CCAATCGTGTCACGCGCA 61.411 61.111 20.56 3.99 42.21 6.09
451 458 2.739704 CCAATCGTGTCACGCGCAT 61.740 57.895 20.56 6.37 42.21 4.73
483 516 1.939785 CGCGCTGACATCGTCTACC 60.940 63.158 5.56 0.00 33.15 3.18
492 525 2.434702 GACATCGTCTACCCCAATCCTT 59.565 50.000 0.00 0.00 0.00 3.36
534 656 4.221482 TCCCCTGACTAATCATCATCATCG 59.779 45.833 0.00 0.00 33.22 3.84
535 657 4.020751 CCCCTGACTAATCATCATCATCGT 60.021 45.833 0.00 0.00 33.22 3.73
536 658 5.167121 CCCTGACTAATCATCATCATCGTC 58.833 45.833 0.00 0.00 33.22 4.20
537 659 4.855937 CCTGACTAATCATCATCATCGTCG 59.144 45.833 0.00 0.00 33.22 5.12
538 660 5.438761 TGACTAATCATCATCATCGTCGT 57.561 39.130 0.00 0.00 0.00 4.34
539 661 5.452777 TGACTAATCATCATCATCGTCGTC 58.547 41.667 0.00 0.00 0.00 4.20
577 699 0.250513 GATGGAGGAACGAGCCAAGT 59.749 55.000 0.00 0.00 34.95 3.16
636 758 4.200283 CTCGCCGTCCTCCAGCTC 62.200 72.222 0.00 0.00 0.00 4.09
741 863 3.376078 GTCGCCGACCTGGTACCA 61.376 66.667 15.39 15.39 41.21 3.25
759 881 3.459063 CGTTCTCCGGACCCCTCC 61.459 72.222 0.00 0.00 0.00 4.30
770 892 0.252284 GACCCCTCCTCTCCTTGTCA 60.252 60.000 0.00 0.00 0.00 3.58
777 899 1.353358 TCCTCTCCTTGTCAGACGGTA 59.647 52.381 0.00 0.00 0.00 4.02
853 975 1.023513 GCAACGGAGCATCAAGAGCT 61.024 55.000 0.00 0.00 46.82 4.09
864 986 2.359230 AAGAGCTTGCGCCTCACC 60.359 61.111 4.18 0.00 36.60 4.02
876 998 0.173708 GCCTCACCTTCTACCTCGTG 59.826 60.000 0.00 0.00 0.00 4.35
880 1002 1.075050 TCACCTTCTACCTCGTGGACT 59.925 52.381 11.17 0.00 37.04 3.85
1029 1154 1.696832 GGCGCTTCATGTCGTTCCTC 61.697 60.000 7.64 0.00 0.00 3.71
1251 1376 2.637947 GAGCCTTTCTTCCATGGAGTC 58.362 52.381 15.53 0.00 0.00 3.36
1296 1421 2.950172 GCGGCTTTTCTGCGACGAA 61.950 57.895 0.00 0.00 37.32 3.85
1359 1484 2.225091 TGGACATGTTCCTTGCCTTGAT 60.225 45.455 0.46 0.00 46.10 2.57
1448 1573 6.407074 GCCTTCAGTAACCTCAGAGCTATTTA 60.407 42.308 0.00 0.00 0.00 1.40
1463 1588 6.825721 AGAGCTATTTATCTCAACAACTTGGG 59.174 38.462 0.00 0.00 0.00 4.12
1572 1697 4.865776 TCCCTAAAATTCGTGTTGCAAAG 58.134 39.130 0.00 0.00 0.00 2.77
1573 1698 4.339814 TCCCTAAAATTCGTGTTGCAAAGT 59.660 37.500 0.00 0.00 0.00 2.66
1574 1699 4.444056 CCCTAAAATTCGTGTTGCAAAGTG 59.556 41.667 0.00 0.00 0.00 3.16
1575 1700 3.923827 AAAATTCGTGTTGCAAAGTGC 57.076 38.095 0.00 0.00 45.29 4.40
1601 1726 2.883574 CATGCAAGCCCATGTACTTTG 58.116 47.619 0.00 0.00 38.19 2.77
1602 1727 2.284754 TGCAAGCCCATGTACTTTGA 57.715 45.000 0.00 0.00 0.00 2.69
1603 1728 2.161855 TGCAAGCCCATGTACTTTGAG 58.838 47.619 0.00 0.00 0.00 3.02
1614 1739 6.545666 CCCATGTACTTTGAGGCATTATTGTA 59.454 38.462 0.00 0.00 0.00 2.41
1623 1748 9.888878 CTTTGAGGCATTATTGTATTCAGTATG 57.111 33.333 0.00 0.00 37.54 2.39
1624 1749 7.439157 TGAGGCATTATTGTATTCAGTATGC 57.561 36.000 0.00 0.00 35.14 3.14
1625 1750 6.997476 TGAGGCATTATTGTATTCAGTATGCA 59.003 34.615 0.00 0.00 36.31 3.96
1626 1751 7.666804 TGAGGCATTATTGTATTCAGTATGCAT 59.333 33.333 3.79 3.79 36.31 3.96
1627 1752 8.413309 AGGCATTATTGTATTCAGTATGCATT 57.587 30.769 3.54 0.00 36.31 3.56
1628 1753 8.517878 AGGCATTATTGTATTCAGTATGCATTC 58.482 33.333 3.54 0.00 36.31 2.67
1629 1754 8.298854 GGCATTATTGTATTCAGTATGCATTCA 58.701 33.333 3.54 0.00 36.31 2.57
1630 1755 9.338291 GCATTATTGTATTCAGTATGCATTCAG 57.662 33.333 3.54 0.00 35.53 3.02
1640 1765 5.545335 TCAGTATGCATTCAGTATCCATCCT 59.455 40.000 3.54 0.00 34.76 3.24
1686 1811 3.005261 ACTTCATTTTTGTGTGCGGCATA 59.995 39.130 5.72 0.00 0.00 3.14
1714 1842 7.980099 AGTTTGATCTTATTTCCTCGTCGTAAT 59.020 33.333 0.00 0.00 0.00 1.89
1756 1884 8.709308 AGCATGTTCAAAGTCCTACTATCTTAT 58.291 33.333 0.00 0.00 0.00 1.73
1852 1986 6.931281 TGTTGATCCTCTTCTCTACAAAGTTG 59.069 38.462 0.00 0.00 0.00 3.16
1859 1993 6.712547 CCTCTTCTCTACAAAGTTGGTCAAAT 59.287 38.462 0.00 0.00 0.00 2.32
1872 2006 8.644374 AAGTTGGTCAAATTTGGTAAGCTATA 57.356 30.769 17.90 0.00 0.00 1.31
1873 2007 8.823220 AGTTGGTCAAATTTGGTAAGCTATAT 57.177 30.769 17.90 0.00 0.00 0.86
1874 2008 8.903820 AGTTGGTCAAATTTGGTAAGCTATATC 58.096 33.333 17.90 0.00 0.00 1.63
1875 2009 8.682710 GTTGGTCAAATTTGGTAAGCTATATCA 58.317 33.333 17.90 0.00 0.00 2.15
1978 2115 6.777091 TGGAATTGCATGGCTACTTTATACAT 59.223 34.615 0.00 0.00 0.00 2.29
2046 2264 9.559958 CACTTTCTATGCCAAATTTAGTGTTAG 57.440 33.333 0.00 0.00 0.00 2.34
2212 2456 0.841289 TTTTATTCCCCCGGATCGCT 59.159 50.000 0.73 0.00 0.00 4.93
2214 2458 1.946984 TTATTCCCCCGGATCGCTAT 58.053 50.000 0.73 0.00 0.00 2.97
2311 2555 1.644509 TGCTGGGCTTAGAGAAGACA 58.355 50.000 0.00 0.00 43.28 3.41
2338 2582 0.941463 GGTGCGATACATCTGGCTCG 60.941 60.000 0.00 0.00 0.00 5.03
2395 2639 4.213482 ACTTACTTGAACAATGTCCGCTTC 59.787 41.667 0.00 0.00 0.00 3.86
2411 2655 2.454055 GCTTCGAAATTGCTATGGTGC 58.546 47.619 0.00 0.00 0.00 5.01
2538 2782 4.693566 GTCCCATGTTGAATTAGTTCGTGA 59.306 41.667 0.00 0.00 37.15 4.35
2592 2836 5.632347 GCTTCTTTGTTCATGGTTGATTCTG 59.368 40.000 0.00 0.00 0.00 3.02
2641 2885 2.358322 ACGGTTTTGAGTTGGGATGT 57.642 45.000 0.00 0.00 0.00 3.06
2691 2935 2.423373 CCTGATTGGGAATACAGGGTGG 60.423 54.545 0.00 0.00 44.04 4.61
2734 2978 8.492748 TGATTTGTTGACGAGTTGTTTATAGAC 58.507 33.333 0.00 0.00 0.00 2.59
2736 2980 7.402811 TTGTTGACGAGTTGTTTATAGACAG 57.597 36.000 0.00 0.00 0.00 3.51
2753 2997 3.579151 AGACAGGAGAGTTTTAGGACCAC 59.421 47.826 0.00 0.00 0.00 4.16
2794 3038 4.110482 GTCGGTCATGTTGGATGTAGTAC 58.890 47.826 0.00 0.00 0.00 2.73
2849 3093 8.915654 AGAAATTTGAATTCTTGATTTGCGTAC 58.084 29.630 7.05 0.00 33.41 3.67
2854 3098 3.799137 TTCTTGATTTGCGTACGAACC 57.201 42.857 21.65 1.31 0.00 3.62
2865 3109 0.606604 GTACGAACCTCTGGCTCCAA 59.393 55.000 0.00 0.00 0.00 3.53
2871 3115 1.153086 CCTCTGGCTCCAAATCGGG 60.153 63.158 0.00 0.00 34.36 5.14
2880 3124 2.358619 CAAATCGGGGGAAGGGCA 59.641 61.111 0.00 0.00 0.00 5.36
2881 3125 1.076044 CAAATCGGGGGAAGGGCAT 60.076 57.895 0.00 0.00 0.00 4.40
2882 3126 0.687427 CAAATCGGGGGAAGGGCATT 60.687 55.000 0.00 0.00 0.00 3.56
2922 3166 1.894699 GAATCTTGGGTAGGGGGTCT 58.105 55.000 0.00 0.00 0.00 3.85
2923 3167 2.206223 GAATCTTGGGTAGGGGGTCTT 58.794 52.381 0.00 0.00 0.00 3.01
2927 3171 1.708551 CTTGGGTAGGGGGTCTTGAAA 59.291 52.381 0.00 0.00 0.00 2.69
2929 3173 2.364190 TGGGTAGGGGGTCTTGAAATT 58.636 47.619 0.00 0.00 0.00 1.82
2960 3205 3.166679 GGATCGAAGGTAATAGGAGGCT 58.833 50.000 0.00 0.00 0.00 4.58
3087 3333 6.636562 ACCTCGAGATCGTAATGACTAAAT 57.363 37.500 15.71 0.00 40.80 1.40
3118 3364 7.603180 TGTCTAGCCTGTATGATTATGACTT 57.397 36.000 0.00 0.00 0.00 3.01
3122 3368 8.928448 TCTAGCCTGTATGATTATGACTTTCTT 58.072 33.333 0.00 0.00 0.00 2.52
3123 3369 9.202273 CTAGCCTGTATGATTATGACTTTCTTC 57.798 37.037 0.00 0.00 0.00 2.87
3169 3417 0.487772 GATACCAGAGGGGGCTAGGA 59.512 60.000 0.00 0.00 42.91 2.94
3183 3431 3.451178 GGGCTAGGATTTGTACAGAGTCA 59.549 47.826 0.00 0.00 0.00 3.41
3189 3437 7.982354 GCTAGGATTTGTACAGAGTCAGTTTAT 59.018 37.037 0.00 0.00 0.00 1.40
3198 3446 9.516546 TGTACAGAGTCAGTTTATAGAGAAAGA 57.483 33.333 0.00 0.00 0.00 2.52
3217 3465 7.042335 AGAAAGAAATCTTCATATCCGAACGT 58.958 34.615 0.00 0.00 34.61 3.99
3277 3529 0.687920 TTGTATCTTCACGGCCCACA 59.312 50.000 0.00 0.00 0.00 4.17
3298 3550 2.510691 CCGGCCCACGTCACATAC 60.511 66.667 0.00 0.00 42.24 2.39
3311 3563 3.467226 CATACCCCGGACGCCTGT 61.467 66.667 0.73 0.00 0.00 4.00
3354 3606 2.467880 CTCAGTAGCCCCTAAACCAGA 58.532 52.381 0.00 0.00 0.00 3.86
3370 3622 4.801330 ACCAGACTTCAATGACGATGTA 57.199 40.909 0.00 0.00 0.00 2.29
3371 3623 4.495422 ACCAGACTTCAATGACGATGTAC 58.505 43.478 0.00 0.00 0.00 2.90
3375 3627 2.494471 ACTTCAATGACGATGTACCCGA 59.506 45.455 11.03 0.00 0.00 5.14
3435 3688 4.406003 TCCTCCAATACTCCAAAGTAGCTC 59.594 45.833 0.00 0.00 41.22 4.09
3438 3691 4.113354 CCAATACTCCAAAGTAGCTCGAC 58.887 47.826 0.00 0.00 41.22 4.20
3469 3723 7.450634 AGAACTATATCCGGCTCTGTACAATAA 59.549 37.037 0.00 0.00 0.00 1.40
3484 3738 6.299922 TGTACAATAATCACAACCCTGAACA 58.700 36.000 0.00 0.00 0.00 3.18
3505 3761 9.810545 TGAACAACAAAGGAAAAATACTTAAGG 57.189 29.630 7.53 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.337578 ACCATTTATTTTGCACGGCTATT 57.662 34.783 0.00 0.00 0.00 1.73
1 2 5.108517 CAACCATTTATTTTGCACGGCTAT 58.891 37.500 0.00 0.00 0.00 2.97
2 3 4.489810 CAACCATTTATTTTGCACGGCTA 58.510 39.130 0.00 0.00 0.00 3.93
5 6 2.999355 CCCAACCATTTATTTTGCACGG 59.001 45.455 0.00 0.00 0.00 4.94
6 7 2.999355 CCCCAACCATTTATTTTGCACG 59.001 45.455 0.00 0.00 0.00 5.34
7 8 4.014569 ACCCCAACCATTTATTTTGCAC 57.985 40.909 0.00 0.00 0.00 4.57
9 10 3.755905 CCAACCCCAACCATTTATTTTGC 59.244 43.478 0.00 0.00 0.00 3.68
11 12 4.262678 CGTCCAACCCCAACCATTTATTTT 60.263 41.667 0.00 0.00 0.00 1.82
12 13 3.259625 CGTCCAACCCCAACCATTTATTT 59.740 43.478 0.00 0.00 0.00 1.40
13 14 2.829120 CGTCCAACCCCAACCATTTATT 59.171 45.455 0.00 0.00 0.00 1.40
14 15 2.452505 CGTCCAACCCCAACCATTTAT 58.547 47.619 0.00 0.00 0.00 1.40
15 16 1.912417 CGTCCAACCCCAACCATTTA 58.088 50.000 0.00 0.00 0.00 1.40
16 17 1.468506 GCGTCCAACCCCAACCATTT 61.469 55.000 0.00 0.00 0.00 2.32
17 18 1.906333 GCGTCCAACCCCAACCATT 60.906 57.895 0.00 0.00 0.00 3.16
18 19 2.282887 GCGTCCAACCCCAACCAT 60.283 61.111 0.00 0.00 0.00 3.55
19 20 4.589675 GGCGTCCAACCCCAACCA 62.590 66.667 0.00 0.00 0.00 3.67
35 36 3.242897 TTAACCACCAGACGGCGGG 62.243 63.158 13.24 5.64 39.01 6.13
36 37 2.030958 GTTAACCACCAGACGGCGG 61.031 63.158 13.24 0.00 40.71 6.13
37 38 2.377310 CGTTAACCACCAGACGGCG 61.377 63.158 4.80 4.80 34.57 6.46
38 39 1.287041 GACGTTAACCACCAGACGGC 61.287 60.000 0.00 0.00 39.63 5.68
39 40 0.316204 AGACGTTAACCACCAGACGG 59.684 55.000 0.00 0.00 39.63 4.79
40 41 1.001048 TCAGACGTTAACCACCAGACG 60.001 52.381 0.00 0.00 41.00 4.18
41 42 2.673833 CTCAGACGTTAACCACCAGAC 58.326 52.381 0.00 0.00 0.00 3.51
42 43 1.000506 GCTCAGACGTTAACCACCAGA 59.999 52.381 0.00 0.00 0.00 3.86
43 44 1.429463 GCTCAGACGTTAACCACCAG 58.571 55.000 0.00 0.00 0.00 4.00
44 45 0.034337 GGCTCAGACGTTAACCACCA 59.966 55.000 0.00 0.00 0.00 4.17
45 46 1.012486 CGGCTCAGACGTTAACCACC 61.012 60.000 0.00 0.00 0.00 4.61
46 47 2.442084 CGGCTCAGACGTTAACCAC 58.558 57.895 0.00 0.00 0.00 4.16
47 48 4.979204 CGGCTCAGACGTTAACCA 57.021 55.556 0.00 0.00 0.00 3.67
61 62 4.012895 CACGTTGTGAGCCACGGC 62.013 66.667 0.00 0.00 37.14 5.68
62 63 1.667830 ATCACGTTGTGAGCCACGG 60.668 57.895 5.80 0.00 46.04 4.94
63 64 1.492873 CATCACGTTGTGAGCCACG 59.507 57.895 5.80 0.00 46.04 4.94
64 65 1.868997 CCATCACGTTGTGAGCCAC 59.131 57.895 5.80 0.00 46.04 5.01
65 66 1.965930 GCCATCACGTTGTGAGCCA 60.966 57.895 5.80 0.00 46.04 4.75
66 67 2.690778 GGCCATCACGTTGTGAGCC 61.691 63.158 12.57 12.57 46.04 4.70
67 68 2.690778 GGGCCATCACGTTGTGAGC 61.691 63.158 4.39 4.48 46.04 4.26
68 69 0.677731 ATGGGCCATCACGTTGTGAG 60.678 55.000 14.78 0.00 46.04 3.51
69 70 0.676466 GATGGGCCATCACGTTGTGA 60.676 55.000 35.84 1.65 46.90 3.58
70 71 0.677731 AGATGGGCCATCACGTTGTG 60.678 55.000 39.87 0.00 42.72 3.33
71 72 0.677731 CAGATGGGCCATCACGTTGT 60.678 55.000 39.87 21.20 42.72 3.32
72 73 0.392863 TCAGATGGGCCATCACGTTG 60.393 55.000 39.87 30.32 42.72 4.10
73 74 0.548031 ATCAGATGGGCCATCACGTT 59.452 50.000 39.87 25.09 42.72 3.99
74 75 0.107456 GATCAGATGGGCCATCACGT 59.893 55.000 39.87 27.18 42.72 4.49
75 76 0.604780 GGATCAGATGGGCCATCACG 60.605 60.000 39.87 31.16 42.72 4.35
76 77 0.604780 CGGATCAGATGGGCCATCAC 60.605 60.000 39.87 27.82 42.72 3.06
77 78 1.756665 CGGATCAGATGGGCCATCA 59.243 57.895 39.87 25.60 42.72 3.07
78 79 1.673665 GCGGATCAGATGGGCCATC 60.674 63.158 34.42 34.42 40.80 3.51
79 80 2.433446 GCGGATCAGATGGGCCAT 59.567 61.111 21.39 21.39 0.00 4.40
80 81 3.877450 GGCGGATCAGATGGGCCA 61.877 66.667 9.61 9.61 43.23 5.36
81 82 4.996434 CGGCGGATCAGATGGGCC 62.996 72.222 0.00 10.22 40.36 5.80
83 84 3.933722 AGCGGCGGATCAGATGGG 61.934 66.667 9.78 0.00 0.00 4.00
84 85 2.664185 CAGCGGCGGATCAGATGG 60.664 66.667 9.78 0.00 0.00 3.51
85 86 3.344215 GCAGCGGCGGATCAGATG 61.344 66.667 9.78 0.00 0.00 2.90
98 99 4.500116 GTCCGTCCTCCTCGCAGC 62.500 72.222 0.00 0.00 0.00 5.25
99 100 4.180946 CGTCCGTCCTCCTCGCAG 62.181 72.222 0.00 0.00 0.00 5.18
101 102 4.176851 GACGTCCGTCCTCCTCGC 62.177 72.222 3.51 0.00 39.08 5.03
102 103 3.862402 CGACGTCCGTCCTCCTCG 61.862 72.222 10.58 0.00 41.76 4.63
103 104 4.176851 GCGACGTCCGTCCTCCTC 62.177 72.222 10.58 0.00 41.76 3.71
105 106 1.996786 TAATGCGACGTCCGTCCTCC 61.997 60.000 10.58 4.03 41.76 4.30
106 107 0.179156 TTAATGCGACGTCCGTCCTC 60.179 55.000 10.58 6.96 41.76 3.71
107 108 0.244450 TTTAATGCGACGTCCGTCCT 59.756 50.000 10.58 0.03 41.76 3.85
108 109 1.283736 ATTTAATGCGACGTCCGTCC 58.716 50.000 10.58 7.60 41.76 4.79
109 110 2.097541 GCTATTTAATGCGACGTCCGTC 60.098 50.000 10.58 9.69 41.15 4.79
110 111 1.856597 GCTATTTAATGCGACGTCCGT 59.143 47.619 10.58 1.28 41.15 4.69
111 112 1.191647 GGCTATTTAATGCGACGTCCG 59.808 52.381 10.58 6.51 42.21 4.79
112 113 1.191647 CGGCTATTTAATGCGACGTCC 59.808 52.381 10.58 3.43 0.00 4.79
113 114 1.856597 ACGGCTATTTAATGCGACGTC 59.143 47.619 5.18 5.18 0.00 4.34
114 115 1.930567 ACGGCTATTTAATGCGACGT 58.069 45.000 4.56 4.56 0.00 4.34
115 116 2.160013 GCTACGGCTATTTAATGCGACG 60.160 50.000 3.45 3.45 35.22 5.12
116 117 2.798283 TGCTACGGCTATTTAATGCGAC 59.202 45.455 0.00 0.00 39.59 5.19
117 118 3.057019 CTGCTACGGCTATTTAATGCGA 58.943 45.455 0.00 0.00 39.59 5.10
118 119 3.057019 TCTGCTACGGCTATTTAATGCG 58.943 45.455 0.00 0.00 39.59 4.73
119 120 4.058817 ACTCTGCTACGGCTATTTAATGC 58.941 43.478 0.00 0.00 39.59 3.56
120 121 4.449068 CCACTCTGCTACGGCTATTTAATG 59.551 45.833 0.00 0.00 39.59 1.90
121 122 4.344102 TCCACTCTGCTACGGCTATTTAAT 59.656 41.667 0.00 0.00 39.59 1.40
122 123 3.702548 TCCACTCTGCTACGGCTATTTAA 59.297 43.478 0.00 0.00 39.59 1.52
123 124 3.067742 GTCCACTCTGCTACGGCTATTTA 59.932 47.826 0.00 0.00 39.59 1.40
124 125 2.108168 TCCACTCTGCTACGGCTATTT 58.892 47.619 0.00 0.00 39.59 1.40
125 126 1.409427 GTCCACTCTGCTACGGCTATT 59.591 52.381 0.00 0.00 39.59 1.73
126 127 1.033574 GTCCACTCTGCTACGGCTAT 58.966 55.000 0.00 0.00 39.59 2.97
127 128 1.035932 GGTCCACTCTGCTACGGCTA 61.036 60.000 0.00 0.00 39.59 3.93
128 129 2.352032 GGTCCACTCTGCTACGGCT 61.352 63.158 0.00 0.00 39.59 5.52
129 130 2.184579 GGTCCACTCTGCTACGGC 59.815 66.667 0.00 0.00 39.26 5.68
130 131 1.513158 CTGGTCCACTCTGCTACGG 59.487 63.158 0.00 0.00 0.00 4.02
131 132 1.513158 CCTGGTCCACTCTGCTACG 59.487 63.158 0.00 0.00 0.00 3.51
132 133 0.905337 ACCCTGGTCCACTCTGCTAC 60.905 60.000 0.00 0.00 0.00 3.58
133 134 0.614979 GACCCTGGTCCACTCTGCTA 60.615 60.000 4.93 0.00 39.08 3.49
134 135 1.915769 GACCCTGGTCCACTCTGCT 60.916 63.158 4.93 0.00 39.08 4.24
135 136 1.915769 AGACCCTGGTCCACTCTGC 60.916 63.158 12.66 0.00 45.59 4.26
136 137 1.548357 CCAGACCCTGGTCCACTCTG 61.548 65.000 12.66 4.36 45.82 3.35
137 138 1.229336 CCAGACCCTGGTCCACTCT 60.229 63.158 12.66 0.00 45.82 3.24
138 139 3.393360 CCAGACCCTGGTCCACTC 58.607 66.667 12.66 0.00 45.82 3.51
157 158 4.331968 TGGAGATGTATGAACGCCTTTTT 58.668 39.130 0.00 0.00 0.00 1.94
158 159 3.950397 TGGAGATGTATGAACGCCTTTT 58.050 40.909 0.00 0.00 0.00 2.27
159 160 3.627395 TGGAGATGTATGAACGCCTTT 57.373 42.857 0.00 0.00 0.00 3.11
160 161 3.627395 TTGGAGATGTATGAACGCCTT 57.373 42.857 0.00 0.00 0.00 4.35
161 162 3.627395 TTTGGAGATGTATGAACGCCT 57.373 42.857 0.00 0.00 0.00 5.52
162 163 4.814234 TGTATTTGGAGATGTATGAACGCC 59.186 41.667 0.00 0.00 0.00 5.68
163 164 5.984233 TGTATTTGGAGATGTATGAACGC 57.016 39.130 0.00 0.00 0.00 4.84
164 165 6.483307 ACCATGTATTTGGAGATGTATGAACG 59.517 38.462 0.00 0.00 39.25 3.95
165 166 7.807977 ACCATGTATTTGGAGATGTATGAAC 57.192 36.000 0.00 0.00 39.25 3.18
166 167 9.913310 TTTACCATGTATTTGGAGATGTATGAA 57.087 29.630 0.00 0.00 39.25 2.57
167 168 9.913310 TTTTACCATGTATTTGGAGATGTATGA 57.087 29.630 0.00 0.00 39.25 2.15
175 176 9.762933 CCCAATTATTTTACCATGTATTTGGAG 57.237 33.333 11.26 2.78 39.25 3.86
176 177 8.709308 CCCCAATTATTTTACCATGTATTTGGA 58.291 33.333 11.26 0.00 39.25 3.53
177 178 8.490311 ACCCCAATTATTTTACCATGTATTTGG 58.510 33.333 0.00 0.00 42.82 3.28
180 181 9.945633 ACTACCCCAATTATTTTACCATGTATT 57.054 29.630 0.00 0.00 0.00 1.89
181 182 9.362151 CACTACCCCAATTATTTTACCATGTAT 57.638 33.333 0.00 0.00 0.00 2.29
182 183 7.285858 GCACTACCCCAATTATTTTACCATGTA 59.714 37.037 0.00 0.00 0.00 2.29
183 184 6.097696 GCACTACCCCAATTATTTTACCATGT 59.902 38.462 0.00 0.00 0.00 3.21
184 185 6.323739 AGCACTACCCCAATTATTTTACCATG 59.676 38.462 0.00 0.00 0.00 3.66
185 186 6.440354 AGCACTACCCCAATTATTTTACCAT 58.560 36.000 0.00 0.00 0.00 3.55
186 187 5.833340 AGCACTACCCCAATTATTTTACCA 58.167 37.500 0.00 0.00 0.00 3.25
187 188 6.785337 AAGCACTACCCCAATTATTTTACC 57.215 37.500 0.00 0.00 0.00 2.85
188 189 9.350951 AGATAAGCACTACCCCAATTATTTTAC 57.649 33.333 0.00 0.00 0.00 2.01
189 190 9.930158 AAGATAAGCACTACCCCAATTATTTTA 57.070 29.630 0.00 0.00 0.00 1.52
190 191 8.838649 AAGATAAGCACTACCCCAATTATTTT 57.161 30.769 0.00 0.00 0.00 1.82
191 192 8.695456 CAAAGATAAGCACTACCCCAATTATTT 58.305 33.333 0.00 0.00 0.00 1.40
192 193 7.201911 GCAAAGATAAGCACTACCCCAATTATT 60.202 37.037 0.00 0.00 0.00 1.40
193 194 6.265422 GCAAAGATAAGCACTACCCCAATTAT 59.735 38.462 0.00 0.00 0.00 1.28
194 195 5.592688 GCAAAGATAAGCACTACCCCAATTA 59.407 40.000 0.00 0.00 0.00 1.40
195 196 4.402474 GCAAAGATAAGCACTACCCCAATT 59.598 41.667 0.00 0.00 0.00 2.32
196 197 3.954258 GCAAAGATAAGCACTACCCCAAT 59.046 43.478 0.00 0.00 0.00 3.16
197 198 3.352648 GCAAAGATAAGCACTACCCCAA 58.647 45.455 0.00 0.00 0.00 4.12
198 199 2.679639 CGCAAAGATAAGCACTACCCCA 60.680 50.000 0.00 0.00 0.00 4.96
199 200 1.940613 CGCAAAGATAAGCACTACCCC 59.059 52.381 0.00 0.00 0.00 4.95
200 201 1.330829 GCGCAAAGATAAGCACTACCC 59.669 52.381 0.30 0.00 0.00 3.69
201 202 1.330829 GGCGCAAAGATAAGCACTACC 59.669 52.381 10.83 0.00 0.00 3.18
202 203 2.006888 TGGCGCAAAGATAAGCACTAC 58.993 47.619 10.83 0.00 0.00 2.73
203 204 2.279741 CTGGCGCAAAGATAAGCACTA 58.720 47.619 10.83 0.00 0.00 2.74
204 205 1.089920 CTGGCGCAAAGATAAGCACT 58.910 50.000 10.83 0.00 0.00 4.40
205 206 0.524180 GCTGGCGCAAAGATAAGCAC 60.524 55.000 10.83 0.00 35.78 4.40
206 207 0.677731 AGCTGGCGCAAAGATAAGCA 60.678 50.000 10.83 0.00 39.10 3.91
207 208 0.248377 CAGCTGGCGCAAAGATAAGC 60.248 55.000 10.83 6.14 39.10 3.09
208 209 1.063174 GTCAGCTGGCGCAAAGATAAG 59.937 52.381 15.13 0.00 39.10 1.73
209 210 1.086696 GTCAGCTGGCGCAAAGATAA 58.913 50.000 15.13 0.00 39.10 1.75
210 211 1.083806 CGTCAGCTGGCGCAAAGATA 61.084 55.000 29.53 0.00 35.94 1.98
211 212 2.393768 CGTCAGCTGGCGCAAAGAT 61.394 57.895 29.53 0.99 35.94 2.40
212 213 3.043713 CGTCAGCTGGCGCAAAGA 61.044 61.111 29.53 0.00 35.94 2.52
213 214 4.093952 CCGTCAGCTGGCGCAAAG 62.094 66.667 34.35 17.50 42.59 2.77
223 224 2.817258 ACTCTATATCTCAGCCGTCAGC 59.183 50.000 0.00 0.00 44.25 4.26
224 225 3.438781 GGACTCTATATCTCAGCCGTCAG 59.561 52.174 0.00 0.00 0.00 3.51
225 226 3.181443 TGGACTCTATATCTCAGCCGTCA 60.181 47.826 0.00 0.00 0.00 4.35
226 227 3.413327 TGGACTCTATATCTCAGCCGTC 58.587 50.000 0.00 0.00 0.00 4.79
227 228 3.510531 TGGACTCTATATCTCAGCCGT 57.489 47.619 0.00 0.00 0.00 5.68
228 229 4.096231 CAGATGGACTCTATATCTCAGCCG 59.904 50.000 0.00 0.00 31.13 5.52
229 230 5.260424 TCAGATGGACTCTATATCTCAGCC 58.740 45.833 0.00 0.00 31.13 4.85
230 231 5.163622 GCTCAGATGGACTCTATATCTCAGC 60.164 48.000 0.00 0.00 37.77 4.26
231 232 6.182627 AGCTCAGATGGACTCTATATCTCAG 58.817 44.000 0.00 0.00 31.13 3.35
232 233 6.138391 AGCTCAGATGGACTCTATATCTCA 57.862 41.667 0.00 0.00 31.13 3.27
233 234 5.294306 CGAGCTCAGATGGACTCTATATCTC 59.706 48.000 15.40 0.00 31.13 2.75
234 235 5.045942 TCGAGCTCAGATGGACTCTATATCT 60.046 44.000 15.40 0.00 31.13 1.98
235 236 5.182487 TCGAGCTCAGATGGACTCTATATC 58.818 45.833 15.40 0.00 31.13 1.63
236 237 5.172687 TCGAGCTCAGATGGACTCTATAT 57.827 43.478 15.40 0.00 31.13 0.86
237 238 4.574892 CTCGAGCTCAGATGGACTCTATA 58.425 47.826 15.40 0.00 31.13 1.31
238 239 3.411446 CTCGAGCTCAGATGGACTCTAT 58.589 50.000 15.40 0.00 31.13 1.98
239 240 2.844946 CTCGAGCTCAGATGGACTCTA 58.155 52.381 15.40 0.00 31.13 2.43
240 241 1.679139 CTCGAGCTCAGATGGACTCT 58.321 55.000 15.40 0.00 33.14 3.24
241 242 0.030638 GCTCGAGCTCAGATGGACTC 59.969 60.000 29.88 0.00 38.21 3.36
242 243 2.114638 GCTCGAGCTCAGATGGACT 58.885 57.895 29.88 0.00 38.21 3.85
243 244 4.728058 GCTCGAGCTCAGATGGAC 57.272 61.111 29.88 0.00 38.21 4.02
253 254 3.708563 AAGTCTATTCTGAGCTCGAGC 57.291 47.619 30.01 30.01 42.49 5.03
254 255 4.499019 GGGAAAGTCTATTCTGAGCTCGAG 60.499 50.000 8.45 8.45 0.00 4.04
255 256 3.381908 GGGAAAGTCTATTCTGAGCTCGA 59.618 47.826 9.64 6.70 0.00 4.04
256 257 3.131223 TGGGAAAGTCTATTCTGAGCTCG 59.869 47.826 9.64 4.19 0.00 5.03
257 258 4.744795 TGGGAAAGTCTATTCTGAGCTC 57.255 45.455 6.82 6.82 0.00 4.09
258 259 5.306678 CCTATGGGAAAGTCTATTCTGAGCT 59.693 44.000 0.00 0.00 33.58 4.09
259 260 5.071115 ACCTATGGGAAAGTCTATTCTGAGC 59.929 44.000 0.25 0.00 36.25 4.26
260 261 6.739331 ACCTATGGGAAAGTCTATTCTGAG 57.261 41.667 0.25 0.00 36.25 3.35
261 262 6.126768 CCAACCTATGGGAAAGTCTATTCTGA 60.127 42.308 0.25 0.00 46.27 3.27
262 263 6.058183 CCAACCTATGGGAAAGTCTATTCTG 58.942 44.000 0.25 0.00 46.27 3.02
263 264 6.253946 CCAACCTATGGGAAAGTCTATTCT 57.746 41.667 0.25 0.00 46.27 2.40
277 278 3.489059 CGCCAAATAGCAACCAACCTATG 60.489 47.826 0.00 0.00 0.00 2.23
278 279 2.687935 CGCCAAATAGCAACCAACCTAT 59.312 45.455 0.00 0.00 0.00 2.57
279 280 2.088423 CGCCAAATAGCAACCAACCTA 58.912 47.619 0.00 0.00 0.00 3.08
280 281 0.887933 CGCCAAATAGCAACCAACCT 59.112 50.000 0.00 0.00 0.00 3.50
281 282 0.885196 TCGCCAAATAGCAACCAACC 59.115 50.000 0.00 0.00 0.00 3.77
282 283 1.539827 AGTCGCCAAATAGCAACCAAC 59.460 47.619 0.00 0.00 0.00 3.77
283 284 1.904287 AGTCGCCAAATAGCAACCAA 58.096 45.000 0.00 0.00 0.00 3.67
284 285 1.904287 AAGTCGCCAAATAGCAACCA 58.096 45.000 0.00 0.00 0.00 3.67
305 306 1.352056 GCCAGTCTTATTTCGCGCC 59.648 57.895 0.00 0.00 0.00 6.53
359 364 3.066814 GACCCCAGCCGACTACGT 61.067 66.667 0.00 0.00 37.88 3.57
373 378 3.706373 TTCGCAGCTCCCCAGACC 61.706 66.667 0.00 0.00 0.00 3.85
374 379 2.435059 GTTCGCAGCTCCCCAGAC 60.435 66.667 0.00 0.00 0.00 3.51
375 380 3.706373 GGTTCGCAGCTCCCCAGA 61.706 66.667 0.00 0.00 0.00 3.86
376 381 3.710722 AGGTTCGCAGCTCCCCAG 61.711 66.667 0.00 0.00 0.00 4.45
425 430 1.003839 GACACGATTGGGGCAGTCA 60.004 57.895 0.00 0.00 0.00 3.41
435 442 2.128367 TATATGCGCGTGACACGATT 57.872 45.000 31.08 13.70 46.05 3.34
446 453 2.956386 CGCGGTGAAATATATATGCGC 58.044 47.619 0.00 0.00 37.79 6.09
450 457 2.888594 AGCGCGCGGTGAAATATATAT 58.111 42.857 35.56 0.00 0.00 0.86
451 458 2.357327 AGCGCGCGGTGAAATATATA 57.643 45.000 35.56 0.00 0.00 0.86
483 516 0.179062 CGAGGAGCTGAAGGATTGGG 60.179 60.000 0.00 0.00 0.00 4.12
492 525 2.970639 CCCGTTTCGAGGAGCTGA 59.029 61.111 0.00 0.00 0.00 4.26
539 661 2.649034 CTTTGCCCTGCTGCACAG 59.351 61.111 0.00 8.73 46.77 3.66
577 699 0.733150 CTCAGCCTGTCGTCGTCATA 59.267 55.000 0.00 0.00 0.00 2.15
741 863 2.679287 GAGGGGTCCGGAGAACGT 60.679 66.667 3.06 0.00 42.24 3.99
759 881 2.095161 GTGTACCGTCTGACAAGGAGAG 60.095 54.545 8.73 0.00 0.00 3.20
770 892 3.059120 CGTCATCATATCGTGTACCGTCT 60.059 47.826 4.11 0.00 37.94 4.18
777 899 1.040646 AGGCCGTCATCATATCGTGT 58.959 50.000 0.00 0.00 0.00 4.49
825 947 2.966309 GCTCCGTTGCTTGTTCGGG 61.966 63.158 0.00 0.00 43.75 5.14
853 975 1.192146 AGGTAGAAGGTGAGGCGCAA 61.192 55.000 10.83 0.00 0.00 4.85
864 986 3.377798 GGTAAGAGTCCACGAGGTAGAAG 59.622 52.174 0.00 0.00 35.89 2.85
876 998 1.142097 GGAGCGCAGGTAAGAGTCC 59.858 63.158 11.47 0.00 39.88 3.85
880 1002 1.437573 CGATGGAGCGCAGGTAAGA 59.562 57.895 11.47 0.00 39.88 2.10
1047 1172 0.321122 GTCTGGTGAGCCCACTGAAG 60.321 60.000 0.00 0.00 42.77 3.02
1210 1335 3.970205 GGATTTCCAAGGTCCGGAA 57.030 52.632 5.23 0.00 40.81 4.30
1251 1376 2.743752 CGGCACATTGGTCAGCTCG 61.744 63.158 0.00 0.00 0.00 5.03
1296 1421 1.665161 CCGTGAAAGCTAACGACGTCT 60.665 52.381 14.70 0.00 42.32 4.18
1304 1429 0.673644 GCAGCTCCCGTGAAAGCTAA 60.674 55.000 0.00 0.00 46.87 3.09
1359 1484 5.118286 TGTATCGTTGAGAGGTATACGTCA 58.882 41.667 23.56 11.54 35.63 4.35
1448 1573 4.137543 GTGAGTTCCCAAGTTGTTGAGAT 58.862 43.478 1.45 0.00 35.46 2.75
1463 1588 0.035458 CCCCACCAGTCTGTGAGTTC 59.965 60.000 0.00 0.00 38.55 3.01
1574 1699 0.320946 ATGGGCTTGCATGTGTTTGC 60.321 50.000 1.14 0.00 43.07 3.68
1575 1700 1.270412 ACATGGGCTTGCATGTGTTTG 60.270 47.619 7.01 0.00 40.16 2.93
1576 1701 1.050204 ACATGGGCTTGCATGTGTTT 58.950 45.000 7.01 0.00 40.16 2.83
1577 1702 1.545582 GTACATGGGCTTGCATGTGTT 59.454 47.619 15.36 0.00 41.52 3.32
1578 1703 1.176527 GTACATGGGCTTGCATGTGT 58.823 50.000 15.36 0.70 41.52 3.72
1596 1721 7.944729 ACTGAATACAATAATGCCTCAAAGT 57.055 32.000 0.00 0.00 0.00 2.66
1597 1722 9.888878 CATACTGAATACAATAATGCCTCAAAG 57.111 33.333 0.00 0.00 0.00 2.77
1598 1723 8.352201 GCATACTGAATACAATAATGCCTCAAA 58.648 33.333 0.00 0.00 33.40 2.69
1599 1724 7.501892 TGCATACTGAATACAATAATGCCTCAA 59.498 33.333 0.00 0.00 36.01 3.02
1600 1725 6.997476 TGCATACTGAATACAATAATGCCTCA 59.003 34.615 0.00 0.00 36.01 3.86
1601 1726 7.439157 TGCATACTGAATACAATAATGCCTC 57.561 36.000 0.00 0.00 36.01 4.70
1602 1727 8.413309 AATGCATACTGAATACAATAATGCCT 57.587 30.769 0.00 0.00 36.01 4.75
1603 1728 8.298854 TGAATGCATACTGAATACAATAATGCC 58.701 33.333 0.00 0.00 36.01 4.40
1614 1739 6.883217 GGATGGATACTGAATGCATACTGAAT 59.117 38.462 0.00 0.00 45.73 2.57
1623 1748 7.148340 GCACTAATAAGGATGGATACTGAATGC 60.148 40.741 0.00 0.00 37.61 3.56
1624 1749 8.099537 AGCACTAATAAGGATGGATACTGAATG 58.900 37.037 0.00 0.00 37.61 2.67
1625 1750 8.212259 AGCACTAATAAGGATGGATACTGAAT 57.788 34.615 0.00 0.00 37.61 2.57
1626 1751 7.618019 AGCACTAATAAGGATGGATACTGAA 57.382 36.000 0.00 0.00 37.61 3.02
1627 1752 8.901472 ATAGCACTAATAAGGATGGATACTGA 57.099 34.615 0.00 0.00 37.61 3.41
1628 1753 9.950496 AAATAGCACTAATAAGGATGGATACTG 57.050 33.333 0.00 0.00 37.61 2.74
1686 1811 6.649557 ACGACGAGGAAATAAGATCAAACTTT 59.350 34.615 0.00 0.00 0.00 2.66
1834 1968 5.215252 TGACCAACTTTGTAGAGAAGAGG 57.785 43.478 0.00 0.00 0.00 3.69
1923 2060 9.997482 TTGTTACTACTTTCTTTGTAGCAAAAG 57.003 29.630 0.00 0.00 40.56 2.27
1945 2082 3.075884 GCCATGCAATTCCATTGTTGTT 58.924 40.909 0.00 0.00 42.20 2.83
2046 2264 7.173907 AGCTATTGACTGGTTACATGATAATGC 59.826 37.037 0.00 0.00 0.00 3.56
2138 2381 5.633830 ACATAGAAACAAGAACATGCCAG 57.366 39.130 0.00 0.00 0.00 4.85
2198 2442 1.152419 TCATAGCGATCCGGGGGAA 60.152 57.895 0.00 0.00 34.34 3.97
2212 2456 5.163488 CCTCCGTGTTGGTATTGTAGTCATA 60.163 44.000 0.00 0.00 39.52 2.15
2214 2458 3.056393 CCTCCGTGTTGGTATTGTAGTCA 60.056 47.826 0.00 0.00 39.52 3.41
2311 2555 2.435805 AGATGTATCGCACCACCTTGAT 59.564 45.455 0.00 0.00 0.00 2.57
2395 2639 4.512944 ACATCTAGCACCATAGCAATTTCG 59.487 41.667 0.00 0.00 36.85 3.46
2411 2655 3.709987 TCGACATGACATGCACATCTAG 58.290 45.455 15.49 0.00 0.00 2.43
2538 2782 3.622455 GCTAGGGGCTAATGTCACAGTTT 60.622 47.826 0.00 0.00 38.06 2.66
2567 2811 5.537674 AGAATCAACCATGAACAAAGAAGCT 59.462 36.000 0.00 0.00 39.49 3.74
2653 2897 6.150140 CCAATCAGGAGAGAGAAATTTCGTTT 59.850 38.462 12.42 2.50 41.22 3.60
2659 2903 5.786121 TTCCCAATCAGGAGAGAGAAATT 57.214 39.130 0.00 0.00 41.22 1.82
2672 2916 1.568597 CCCACCCTGTATTCCCAATCA 59.431 52.381 0.00 0.00 0.00 2.57
2691 2935 9.659830 CAACAAATCAAAACACTACTAAGTACC 57.340 33.333 0.00 0.00 33.48 3.34
2734 2978 2.353803 CCGTGGTCCTAAAACTCTCCTG 60.354 54.545 0.00 0.00 0.00 3.86
2736 2980 1.622312 ACCGTGGTCCTAAAACTCTCC 59.378 52.381 0.00 0.00 0.00 3.71
2763 3007 0.599204 ACATGACCGACCGTGTGTTC 60.599 55.000 0.00 0.00 35.18 3.18
2765 3009 0.878523 CAACATGACCGACCGTGTGT 60.879 55.000 0.00 0.00 36.49 3.72
2767 3011 1.301401 CCAACATGACCGACCGTGT 60.301 57.895 0.00 0.00 37.86 4.49
2838 3082 2.333926 CAGAGGTTCGTACGCAAATCA 58.666 47.619 11.24 0.00 0.00 2.57
2849 3093 1.373570 GATTTGGAGCCAGAGGTTCG 58.626 55.000 0.00 0.00 33.63 3.95
2854 3098 1.153086 CCCCGATTTGGAGCCAGAG 60.153 63.158 0.00 0.00 42.00 3.35
2865 3109 1.230212 GAATGCCCTTCCCCCGATT 59.770 57.895 0.00 0.00 0.00 3.34
2871 3115 1.452108 CCGACAGAATGCCCTTCCC 60.452 63.158 0.00 0.00 42.53 3.97
2922 3166 4.932799 TCGATCCTTAGACGCAAATTTCAA 59.067 37.500 0.00 0.00 0.00 2.69
2923 3167 4.500127 TCGATCCTTAGACGCAAATTTCA 58.500 39.130 0.00 0.00 0.00 2.69
2927 3171 3.118738 ACCTTCGATCCTTAGACGCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
2929 3173 1.822990 ACCTTCGATCCTTAGACGCAA 59.177 47.619 0.00 0.00 0.00 4.85
2960 3205 0.325602 GGGTAAACATCGTGTCCCCA 59.674 55.000 11.82 0.00 34.61 4.96
3081 3327 6.377912 ACAGGCTAGACATCTAGGATTTAGT 58.622 40.000 15.98 0.00 44.63 2.24
3087 3333 5.584551 TCATACAGGCTAGACATCTAGGA 57.415 43.478 15.98 2.38 44.63 2.94
3118 3364 2.301009 GGAGGGTTTAGTCCGTGAAGAA 59.699 50.000 0.00 0.00 0.00 2.52
3189 3437 9.751542 GTTCGGATATGAAGATTTCTTTCTCTA 57.248 33.333 0.00 0.00 36.11 2.43
3198 3446 5.523916 CCTTGACGTTCGGATATGAAGATTT 59.476 40.000 0.00 0.00 0.00 2.17
3217 3465 0.687757 CCGGATGGGACTCTCCTTGA 60.688 60.000 0.00 0.00 38.47 3.02
3277 3529 4.309950 GTGACGTGGGCCGGACTT 62.310 66.667 7.57 0.00 42.24 3.01
3311 3563 1.651770 AGTCCTGGATTAGAGGGTCCA 59.348 52.381 0.00 0.00 42.03 4.02
3318 3570 2.587777 ACTGAGGGAGTCCTGGATTAGA 59.412 50.000 9.58 0.00 45.05 2.10
3354 3606 2.494471 TCGGGTACATCGTCATTGAAGT 59.506 45.455 7.54 0.00 0.00 3.01
3370 3622 4.022242 CCGAAGATAATCTGTGTATCGGGT 60.022 45.833 0.00 0.00 37.91 5.28
3371 3623 4.486090 CCGAAGATAATCTGTGTATCGGG 58.514 47.826 0.00 0.00 37.91 5.14
3375 3627 5.180117 GCAATGCCGAAGATAATCTGTGTAT 59.820 40.000 0.00 0.00 0.00 2.29
3379 3631 3.544684 TGCAATGCCGAAGATAATCTGT 58.455 40.909 1.53 0.00 0.00 3.41
3435 3688 3.612004 GCCGGATATAGTTCTCTTGGTCG 60.612 52.174 5.05 0.00 0.00 4.79
3438 3691 3.829601 AGAGCCGGATATAGTTCTCTTGG 59.170 47.826 5.05 0.00 0.00 3.61
3469 3723 3.384467 CCTTTGTTGTTCAGGGTTGTGAT 59.616 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.