Multiple sequence alignment - TraesCS5A01G279200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G279200 | chr5A | 100.000 | 4189 | 0 | 0 | 1 | 4189 | 488265591 | 488261403 | 0.000000e+00 | 7736 |
1 | TraesCS5A01G279200 | chr5B | 88.993 | 3516 | 206 | 91 | 644 | 4064 | 464330071 | 464326642 | 0.000000e+00 | 4181 |
2 | TraesCS5A01G279200 | chr5D | 91.455 | 2797 | 137 | 40 | 643 | 3392 | 386654740 | 386651999 | 0.000000e+00 | 3747 |
3 | TraesCS5A01G279200 | chr5D | 85.565 | 672 | 55 | 21 | 3394 | 4060 | 386651892 | 386651258 | 0.000000e+00 | 665 |
4 | TraesCS5A01G279200 | chr2B | 98.346 | 544 | 5 | 2 | 1 | 543 | 39425635 | 39425095 | 0.000000e+00 | 952 |
5 | TraesCS5A01G279200 | chr2B | 97.959 | 98 | 2 | 0 | 548 | 645 | 461096846 | 461096749 | 2.000000e-38 | 171 |
6 | TraesCS5A01G279200 | chr2B | 98.947 | 95 | 1 | 0 | 548 | 642 | 689374633 | 689374727 | 2.000000e-38 | 171 |
7 | TraesCS5A01G279200 | chr4A | 98.158 | 543 | 7 | 1 | 1 | 543 | 377592359 | 377591820 | 0.000000e+00 | 944 |
8 | TraesCS5A01G279200 | chr4A | 97.794 | 544 | 8 | 2 | 1 | 543 | 537234094 | 537234634 | 0.000000e+00 | 935 |
9 | TraesCS5A01G279200 | chr4A | 97.959 | 98 | 2 | 0 | 548 | 645 | 377591883 | 377591786 | 2.000000e-38 | 171 |
10 | TraesCS5A01G279200 | chr7A | 97.978 | 544 | 7 | 2 | 1 | 543 | 121045802 | 121045262 | 0.000000e+00 | 941 |
11 | TraesCS5A01G279200 | chr7A | 97.959 | 98 | 2 | 0 | 548 | 645 | 652192750 | 652192653 | 2.000000e-38 | 171 |
12 | TraesCS5A01G279200 | chr1A | 97.974 | 543 | 8 | 1 | 1 | 543 | 449181351 | 449180812 | 0.000000e+00 | 939 |
13 | TraesCS5A01G279200 | chr1A | 97.610 | 544 | 9 | 2 | 1 | 543 | 58179137 | 58178597 | 0.000000e+00 | 929 |
14 | TraesCS5A01G279200 | chr1A | 98.947 | 95 | 1 | 0 | 548 | 642 | 58178660 | 58178566 | 2.000000e-38 | 171 |
15 | TraesCS5A01G279200 | chr4B | 97.794 | 544 | 8 | 2 | 1 | 543 | 489024698 | 489025238 | 0.000000e+00 | 935 |
16 | TraesCS5A01G279200 | chr4B | 98.947 | 95 | 1 | 0 | 548 | 642 | 489025175 | 489025269 | 2.000000e-38 | 171 |
17 | TraesCS5A01G279200 | chr2A | 97.798 | 545 | 7 | 5 | 1 | 543 | 145437286 | 145437827 | 0.000000e+00 | 935 |
18 | TraesCS5A01G279200 | chr2A | 97.000 | 100 | 3 | 0 | 548 | 647 | 100131197 | 100131098 | 7.200000e-38 | 169 |
19 | TraesCS5A01G279200 | chr7B | 97.610 | 544 | 9 | 2 | 1 | 543 | 253904068 | 253903528 | 0.000000e+00 | 929 |
20 | TraesCS5A01G279200 | chr6B | 97.959 | 98 | 2 | 0 | 548 | 645 | 135851991 | 135851894 | 2.000000e-38 | 171 |
21 | TraesCS5A01G279200 | chr1B | 98.947 | 95 | 1 | 0 | 548 | 642 | 439510920 | 439511014 | 2.000000e-38 | 171 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G279200 | chr5A | 488261403 | 488265591 | 4188 | True | 7736.0 | 7736 | 100.0000 | 1 | 4189 | 1 | chr5A.!!$R1 | 4188 |
1 | TraesCS5A01G279200 | chr5B | 464326642 | 464330071 | 3429 | True | 4181.0 | 4181 | 88.9930 | 644 | 4064 | 1 | chr5B.!!$R1 | 3420 |
2 | TraesCS5A01G279200 | chr5D | 386651258 | 386654740 | 3482 | True | 2206.0 | 3747 | 88.5100 | 643 | 4060 | 2 | chr5D.!!$R1 | 3417 |
3 | TraesCS5A01G279200 | chr2B | 39425095 | 39425635 | 540 | True | 952.0 | 952 | 98.3460 | 1 | 543 | 1 | chr2B.!!$R1 | 542 |
4 | TraesCS5A01G279200 | chr4A | 537234094 | 537234634 | 540 | False | 935.0 | 935 | 97.7940 | 1 | 543 | 1 | chr4A.!!$F1 | 542 |
5 | TraesCS5A01G279200 | chr4A | 377591786 | 377592359 | 573 | True | 557.5 | 944 | 98.0585 | 1 | 645 | 2 | chr4A.!!$R1 | 644 |
6 | TraesCS5A01G279200 | chr7A | 121045262 | 121045802 | 540 | True | 941.0 | 941 | 97.9780 | 1 | 543 | 1 | chr7A.!!$R1 | 542 |
7 | TraesCS5A01G279200 | chr1A | 449180812 | 449181351 | 539 | True | 939.0 | 939 | 97.9740 | 1 | 543 | 1 | chr1A.!!$R1 | 542 |
8 | TraesCS5A01G279200 | chr1A | 58178566 | 58179137 | 571 | True | 550.0 | 929 | 98.2785 | 1 | 642 | 2 | chr1A.!!$R2 | 641 |
9 | TraesCS5A01G279200 | chr4B | 489024698 | 489025269 | 571 | False | 553.0 | 935 | 98.3705 | 1 | 642 | 2 | chr4B.!!$F1 | 641 |
10 | TraesCS5A01G279200 | chr2A | 145437286 | 145437827 | 541 | False | 935.0 | 935 | 97.7980 | 1 | 543 | 1 | chr2A.!!$F1 | 542 |
11 | TraesCS5A01G279200 | chr7B | 253903528 | 253904068 | 540 | True | 929.0 | 929 | 97.6100 | 1 | 543 | 1 | chr7B.!!$R1 | 542 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
553 | 556 | 0.101219 | GTGATTTGAATCTGGGCGCC | 59.899 | 55.000 | 21.18 | 21.18 | 36.39 | 6.53 | F |
1146 | 1198 | 0.246086 | CGGTCTCTTCTGCTTCTGCT | 59.754 | 55.000 | 0.00 | 0.00 | 40.48 | 4.24 | F |
1626 | 1703 | 0.377203 | GATGACGCCGGAATTTGGTC | 59.623 | 55.000 | 5.05 | 2.32 | 0.00 | 4.02 | F |
1664 | 1741 | 1.511768 | GGGTCCCGACTCGAAGAAG | 59.488 | 63.158 | 0.00 | 0.00 | 34.09 | 2.85 | F |
2947 | 3075 | 1.099689 | AACAGGTTTGTGTGGTTCGG | 58.900 | 50.000 | 0.00 | 0.00 | 37.67 | 4.30 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2159 | 2246 | 0.099436 | GCGCTTTGCCAATCACCTAG | 59.901 | 55.0 | 0.0 | 0.0 | 37.76 | 3.02 | R |
2589 | 2678 | 0.105039 | GGTTCTCCATAGCACCCGAG | 59.895 | 60.0 | 0.0 | 0.0 | 33.30 | 4.63 | R |
2883 | 3002 | 0.248377 | GCAGCAAGCAACGATCCATC | 60.248 | 55.0 | 0.0 | 0.0 | 44.79 | 3.51 | R |
3151 | 3279 | 0.398098 | TTCTAGTGTCCCCGATCCCC | 60.398 | 60.0 | 0.0 | 0.0 | 0.00 | 4.81 | R |
3934 | 4205 | 0.036671 | AACCACCGGCTGTAACTAGC | 60.037 | 55.0 | 0.0 | 0.0 | 42.94 | 3.42 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
173 | 174 | 2.718609 | AGGATGGATTGGGGATCGAATT | 59.281 | 45.455 | 0.00 | 0.00 | 35.49 | 2.17 |
543 | 546 | 5.417266 | TGAACAGGTCAGTTTGTGATTTGAA | 59.583 | 36.000 | 0.00 | 0.00 | 37.56 | 2.69 |
544 | 547 | 6.096705 | TGAACAGGTCAGTTTGTGATTTGAAT | 59.903 | 34.615 | 0.00 | 0.00 | 37.56 | 2.57 |
545 | 548 | 6.076981 | ACAGGTCAGTTTGTGATTTGAATC | 57.923 | 37.500 | 0.00 | 0.00 | 37.56 | 2.52 |
546 | 549 | 5.829924 | ACAGGTCAGTTTGTGATTTGAATCT | 59.170 | 36.000 | 5.42 | 0.00 | 37.56 | 2.40 |
547 | 550 | 6.147581 | CAGGTCAGTTTGTGATTTGAATCTG | 58.852 | 40.000 | 5.42 | 0.00 | 37.56 | 2.90 |
548 | 551 | 5.242393 | AGGTCAGTTTGTGATTTGAATCTGG | 59.758 | 40.000 | 5.42 | 0.00 | 37.56 | 3.86 |
549 | 552 | 5.464168 | GTCAGTTTGTGATTTGAATCTGGG | 58.536 | 41.667 | 5.42 | 0.00 | 37.56 | 4.45 |
550 | 553 | 4.022068 | TCAGTTTGTGATTTGAATCTGGGC | 60.022 | 41.667 | 5.42 | 0.00 | 36.39 | 5.36 |
551 | 554 | 3.057315 | AGTTTGTGATTTGAATCTGGGCG | 60.057 | 43.478 | 5.42 | 0.00 | 36.39 | 6.13 |
552 | 555 | 0.810648 | TGTGATTTGAATCTGGGCGC | 59.189 | 50.000 | 0.00 | 0.00 | 36.39 | 6.53 |
553 | 556 | 0.101219 | GTGATTTGAATCTGGGCGCC | 59.899 | 55.000 | 21.18 | 21.18 | 36.39 | 6.53 |
554 | 557 | 1.356624 | GATTTGAATCTGGGCGCCG | 59.643 | 57.895 | 22.54 | 7.85 | 32.66 | 6.46 |
555 | 558 | 2.668261 | GATTTGAATCTGGGCGCCGC | 62.668 | 60.000 | 22.54 | 14.37 | 32.66 | 6.53 |
556 | 559 | 4.713735 | TTGAATCTGGGCGCCGCA | 62.714 | 61.111 | 22.54 | 18.43 | 0.00 | 5.69 |
575 | 578 | 2.938354 | CCAAAGGGTCAGCAGAGTG | 58.062 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
576 | 579 | 0.397941 | CCAAAGGGTCAGCAGAGTGA | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
577 | 580 | 1.202806 | CCAAAGGGTCAGCAGAGTGAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
578 | 581 | 2.575532 | CAAAGGGTCAGCAGAGTGAAA | 58.424 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
579 | 582 | 3.152341 | CAAAGGGTCAGCAGAGTGAAAT | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
580 | 583 | 3.515602 | AAGGGTCAGCAGAGTGAAATT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
581 | 584 | 3.515602 | AGGGTCAGCAGAGTGAAATTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
582 | 585 | 3.837355 | AGGGTCAGCAGAGTGAAATTTT | 58.163 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
583 | 586 | 4.218312 | AGGGTCAGCAGAGTGAAATTTTT | 58.782 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
609 | 612 | 5.247507 | TGAACAGGTCAGTTTGTGATTTG | 57.752 | 39.130 | 0.00 | 0.00 | 37.56 | 2.32 |
610 | 613 | 4.946772 | TGAACAGGTCAGTTTGTGATTTGA | 59.053 | 37.500 | 0.00 | 0.00 | 37.56 | 2.69 |
650 | 653 | 6.506500 | AATCTGTGATTTCTGGCTTTACAG | 57.493 | 37.500 | 0.00 | 0.00 | 39.84 | 2.74 |
677 | 680 | 4.353737 | CATCCGTGATTTTGGCAGTAATG | 58.646 | 43.478 | 2.18 | 0.00 | 0.00 | 1.90 |
741 | 758 | 0.609662 | TCGACCGGGGGTAAAAGAAG | 59.390 | 55.000 | 6.32 | 0.00 | 35.25 | 2.85 |
743 | 760 | 1.002315 | CGACCGGGGGTAAAAGAAGAA | 59.998 | 52.381 | 6.32 | 0.00 | 35.25 | 2.52 |
744 | 761 | 2.708051 | GACCGGGGGTAAAAGAAGAAG | 58.292 | 52.381 | 6.32 | 0.00 | 35.25 | 2.85 |
745 | 762 | 2.303890 | GACCGGGGGTAAAAGAAGAAGA | 59.696 | 50.000 | 6.32 | 0.00 | 35.25 | 2.87 |
746 | 763 | 2.305052 | ACCGGGGGTAAAAGAAGAAGAG | 59.695 | 50.000 | 6.32 | 0.00 | 32.11 | 2.85 |
747 | 764 | 2.355818 | CCGGGGGTAAAAGAAGAAGAGG | 60.356 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
752 | 769 | 5.477291 | GGGGGTAAAAGAAGAAGAGGAAAAG | 59.523 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
777 | 794 | 2.433491 | TGAAACCCATCGCCGTCG | 60.433 | 61.111 | 0.00 | 0.00 | 0.00 | 5.12 |
852 | 870 | 1.755783 | CTACGGGCGAGGTTACCCT | 60.756 | 63.158 | 0.00 | 0.00 | 44.63 | 4.34 |
924 | 965 | 3.512516 | GCCGCAAGCATCTCCACC | 61.513 | 66.667 | 0.00 | 0.00 | 42.97 | 4.61 |
1016 | 1062 | 2.605601 | ACACCCACCTACCGTCCC | 60.606 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
1017 | 1063 | 2.284405 | CACCCACCTACCGTCCCT | 60.284 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1020 | 1066 | 2.762875 | CCACCTACCGTCCCTCCC | 60.763 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1021 | 1067 | 2.363361 | CACCTACCGTCCCTCCCT | 59.637 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1022 | 1068 | 1.757340 | CACCTACCGTCCCTCCCTC | 60.757 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
1023 | 1069 | 2.123382 | CCTACCGTCCCTCCCTCC | 60.123 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1024 | 1070 | 2.123382 | CTACCGTCCCTCCCTCCC | 60.123 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1025 | 1071 | 3.752816 | CTACCGTCCCTCCCTCCCC | 62.753 | 73.684 | 0.00 | 0.00 | 0.00 | 4.81 |
1087 | 1133 | 3.700350 | CTCACCCTCCCCCTCCCT | 61.700 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
1088 | 1134 | 3.216371 | TCACCCTCCCCCTCCCTT | 61.216 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1089 | 1135 | 2.692741 | CACCCTCCCCCTCCCTTC | 60.693 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1090 | 1136 | 4.040198 | ACCCTCCCCCTCCCTTCC | 62.040 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1092 | 1138 | 4.416601 | CCTCCCCCTCCCTTCCGT | 62.417 | 72.222 | 0.00 | 0.00 | 0.00 | 4.69 |
1093 | 1139 | 2.764547 | CTCCCCCTCCCTTCCGTC | 60.765 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
1099 | 1145 | 3.391382 | CTCCCTTCCGTCCGCCTT | 61.391 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1141 | 1193 | 2.665603 | GGCCGGTCTCTTCTGCTT | 59.334 | 61.111 | 1.90 | 0.00 | 0.00 | 3.91 |
1144 | 1196 | 0.739112 | GCCGGTCTCTTCTGCTTCTG | 60.739 | 60.000 | 1.90 | 0.00 | 0.00 | 3.02 |
1145 | 1197 | 0.739112 | CCGGTCTCTTCTGCTTCTGC | 60.739 | 60.000 | 0.00 | 0.00 | 40.20 | 4.26 |
1146 | 1198 | 0.246086 | CGGTCTCTTCTGCTTCTGCT | 59.754 | 55.000 | 0.00 | 0.00 | 40.48 | 4.24 |
1148 | 1200 | 1.405391 | GGTCTCTTCTGCTTCTGCTCC | 60.405 | 57.143 | 0.00 | 0.00 | 40.48 | 4.70 |
1149 | 1201 | 0.529833 | TCTCTTCTGCTTCTGCTCCG | 59.470 | 55.000 | 0.00 | 0.00 | 40.48 | 4.63 |
1150 | 1202 | 0.459934 | CTCTTCTGCTTCTGCTCCGG | 60.460 | 60.000 | 0.00 | 0.00 | 40.48 | 5.14 |
1151 | 1203 | 1.449246 | CTTCTGCTTCTGCTCCGGG | 60.449 | 63.158 | 0.00 | 0.00 | 40.48 | 5.73 |
1152 | 1204 | 1.892819 | CTTCTGCTTCTGCTCCGGGA | 61.893 | 60.000 | 0.00 | 0.00 | 40.48 | 5.14 |
1153 | 1205 | 1.892819 | TTCTGCTTCTGCTCCGGGAG | 61.893 | 60.000 | 19.95 | 19.95 | 40.48 | 4.30 |
1154 | 1206 | 3.382803 | CTGCTTCTGCTCCGGGAGG | 62.383 | 68.421 | 24.81 | 9.89 | 44.51 | 4.30 |
1502 | 1572 | 4.033776 | CCGGCAAGGGCAAGGAGA | 62.034 | 66.667 | 0.00 | 0.00 | 43.71 | 3.71 |
1527 | 1597 | 0.534203 | TCCTGTTTCGCCAAGGTGAC | 60.534 | 55.000 | 1.04 | 0.00 | 34.07 | 3.67 |
1590 | 1667 | 2.409870 | GCCGTGCATTAGCCTGCTT | 61.410 | 57.895 | 0.00 | 0.00 | 42.75 | 3.91 |
1592 | 1669 | 1.226491 | CGTGCATTAGCCTGCTTGC | 60.226 | 57.895 | 8.51 | 8.51 | 42.75 | 4.01 |
1626 | 1703 | 0.377203 | GATGACGCCGGAATTTGGTC | 59.623 | 55.000 | 5.05 | 2.32 | 0.00 | 4.02 |
1664 | 1741 | 1.511768 | GGGTCCCGACTCGAAGAAG | 59.488 | 63.158 | 0.00 | 0.00 | 34.09 | 2.85 |
1685 | 1762 | 2.095718 | GTGCAAAATTGAGGACGAGACC | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1713 | 1790 | 4.787280 | AGGTGGAGGAGGAGGCGG | 62.787 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
1921 | 2004 | 1.884579 | ACTCTCGCCGTCTCTTTTACA | 59.115 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
1946 | 2029 | 5.239306 | TGCCTGAATGAAAAGTTGTCAGTAG | 59.761 | 40.000 | 1.51 | 0.34 | 35.07 | 2.57 |
1947 | 2030 | 5.239525 | GCCTGAATGAAAAGTTGTCAGTAGT | 59.760 | 40.000 | 1.51 | 0.00 | 35.07 | 2.73 |
1948 | 2031 | 6.426937 | GCCTGAATGAAAAGTTGTCAGTAGTA | 59.573 | 38.462 | 1.51 | 0.00 | 35.07 | 1.82 |
1949 | 2032 | 7.571428 | GCCTGAATGAAAAGTTGTCAGTAGTAC | 60.571 | 40.741 | 1.51 | 0.00 | 35.07 | 2.73 |
1950 | 2033 | 7.441157 | CCTGAATGAAAAGTTGTCAGTAGTACA | 59.559 | 37.037 | 1.51 | 0.00 | 35.07 | 2.90 |
2097 | 2182 | 7.056635 | CCATCTAGACTGGGAACATAACATTT | 58.943 | 38.462 | 11.39 | 0.00 | 41.51 | 2.32 |
2159 | 2246 | 9.927668 | TGTCTAATTTGAAGAAATTCCCATTTC | 57.072 | 29.630 | 0.00 | 0.22 | 46.20 | 2.17 |
2239 | 2326 | 1.997669 | CAGCAAGTCGAGGTTAGACC | 58.002 | 55.000 | 0.00 | 0.00 | 39.31 | 3.85 |
2252 | 2339 | 3.143728 | GGTTAGACCCGACACACAATTT | 58.856 | 45.455 | 0.00 | 0.00 | 30.04 | 1.82 |
2270 | 2357 | 5.154932 | CAATTTGTCGCGGTACCAAAATAA | 58.845 | 37.500 | 13.54 | 0.00 | 32.39 | 1.40 |
2284 | 2371 | 5.880341 | ACCAAAATAATTTGTAGCTCTCGC | 58.120 | 37.500 | 2.71 | 0.00 | 43.59 | 5.03 |
2303 | 2390 | 4.369182 | TCGCCGAATTCTCTAATCCTTTC | 58.631 | 43.478 | 3.52 | 0.00 | 0.00 | 2.62 |
2316 | 2403 | 6.698380 | TCTAATCCTTTCGCTGTTTTACTCT | 58.302 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2417 | 2505 | 3.510388 | TGTGAGCTCCAGTTTATCTCG | 57.490 | 47.619 | 12.15 | 0.00 | 0.00 | 4.04 |
2418 | 2506 | 2.197577 | GTGAGCTCCAGTTTATCTCGC | 58.802 | 52.381 | 12.15 | 0.00 | 0.00 | 5.03 |
2421 | 2509 | 3.056304 | GAGCTCCAGTTTATCTCGCATC | 58.944 | 50.000 | 0.87 | 0.00 | 0.00 | 3.91 |
2423 | 2511 | 3.133721 | AGCTCCAGTTTATCTCGCATCTT | 59.866 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2424 | 2512 | 3.492756 | GCTCCAGTTTATCTCGCATCTTC | 59.507 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
2426 | 2514 | 4.938080 | TCCAGTTTATCTCGCATCTTCTC | 58.062 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
2427 | 2515 | 3.733224 | CCAGTTTATCTCGCATCTTCTCG | 59.267 | 47.826 | 0.00 | 0.00 | 0.00 | 4.04 |
2428 | 2516 | 3.181377 | CAGTTTATCTCGCATCTTCTCGC | 59.819 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
2481 | 2570 | 8.486210 | TCTAACATGCTGTTTCCTCTGTATATT | 58.514 | 33.333 | 6.82 | 0.00 | 41.45 | 1.28 |
2499 | 2588 | 6.763135 | TGTATATTCAGATGAACCAAGCACTC | 59.237 | 38.462 | 0.00 | 0.00 | 36.80 | 3.51 |
2589 | 2678 | 2.303311 | AGACCTTTACCAGTCCTTCAGC | 59.697 | 50.000 | 0.00 | 0.00 | 33.29 | 4.26 |
2678 | 2767 | 4.465632 | ACCCTTTTCAAAAACAGGTGAC | 57.534 | 40.909 | 4.98 | 0.00 | 31.44 | 3.67 |
2697 | 2786 | 3.068024 | TGACTGTTGATTGCCTGGAAAAC | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2754 | 2873 | 5.608449 | TGCATCTGATCCTGATACTCTTTG | 58.392 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
2756 | 2875 | 4.679373 | TCTGATCCTGATACTCTTTGCC | 57.321 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
2757 | 2876 | 4.293494 | TCTGATCCTGATACTCTTTGCCT | 58.707 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
2760 | 2879 | 4.718774 | TGATCCTGATACTCTTTGCCTCTT | 59.281 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
2763 | 2882 | 5.880901 | TCCTGATACTCTTTGCCTCTTTTT | 58.119 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
2851 | 2970 | 3.564027 | GAGAATGCGGGTTCGGCG | 61.564 | 66.667 | 0.00 | 0.00 | 36.79 | 6.46 |
2875 | 2994 | 4.980434 | CCGAATTTCGATGGTTCGTATAGT | 59.020 | 41.667 | 19.91 | 0.00 | 43.74 | 2.12 |
2877 | 2996 | 5.684184 | CGAATTTCGATGGTTCGTATAGTGA | 59.316 | 40.000 | 13.45 | 0.00 | 43.74 | 3.41 |
2879 | 2998 | 6.823678 | ATTTCGATGGTTCGTATAGTGAAC | 57.176 | 37.500 | 8.60 | 8.60 | 45.65 | 3.18 |
2880 | 2999 | 4.968812 | TCGATGGTTCGTATAGTGAACA | 57.031 | 40.909 | 15.84 | 6.37 | 45.86 | 3.18 |
2883 | 3002 | 5.746721 | TCGATGGTTCGTATAGTGAACAATG | 59.253 | 40.000 | 15.84 | 8.20 | 45.86 | 2.82 |
2891 | 3010 | 6.149633 | TCGTATAGTGAACAATGATGGATCG | 58.850 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2933 | 3052 | 4.636206 | GGTAATTCAGCTTGGACTAACAGG | 59.364 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
2947 | 3075 | 1.099689 | AACAGGTTTGTGTGGTTCGG | 58.900 | 50.000 | 0.00 | 0.00 | 37.67 | 4.30 |
2962 | 3090 | 1.812686 | TTCGGCTTACGCAGGTCAGT | 61.813 | 55.000 | 0.00 | 0.00 | 43.86 | 3.41 |
3151 | 3279 | 1.418342 | CGAATGGTACCAAGACGGCG | 61.418 | 60.000 | 20.76 | 4.80 | 39.03 | 6.46 |
3171 | 3299 | 1.718280 | GGGATCGGGGACACTAGAAT | 58.282 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3179 | 3307 | 2.777692 | GGGGACACTAGAATGAATCCCA | 59.222 | 50.000 | 9.26 | 0.00 | 46.58 | 4.37 |
3196 | 3324 | 1.139853 | CCCAGCTGAACTACCATCCTC | 59.860 | 57.143 | 17.39 | 0.00 | 0.00 | 3.71 |
3197 | 3325 | 2.114616 | CCAGCTGAACTACCATCCTCT | 58.885 | 52.381 | 17.39 | 0.00 | 0.00 | 3.69 |
3198 | 3326 | 2.102252 | CCAGCTGAACTACCATCCTCTC | 59.898 | 54.545 | 17.39 | 0.00 | 0.00 | 3.20 |
3216 | 3344 | 4.322349 | CCTCTCCTTGATTCTTCTCGTGTT | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
3382 | 3513 | 4.013050 | TGTCGTGGAAATGGCAATTATGA | 58.987 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
3389 | 3520 | 8.296000 | CGTGGAAATGGCAATTATGAACATATA | 58.704 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3443 | 3679 | 8.028354 | TGTATTGTTTTACAGCTCAATGATTGG | 58.972 | 33.333 | 5.20 | 0.00 | 33.48 | 3.16 |
3471 | 3707 | 5.699839 | CCAAATTACAGTTAAGTGGTGCTC | 58.300 | 41.667 | 14.69 | 0.00 | 0.00 | 4.26 |
3502 | 3738 | 3.402110 | TCATCAATCACAGCGAACAGTT | 58.598 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3507 | 3743 | 4.211164 | TCAATCACAGCGAACAGTTACTTG | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3551 | 3788 | 4.919168 | TGTTCACTCATTTCGGTACTTACG | 59.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3587 | 3825 | 5.529581 | TCACAGTGAACAGTGACTTATCA | 57.470 | 39.130 | 15.25 | 0.00 | 37.44 | 2.15 |
3602 | 3840 | 6.504398 | TGACTTATCACCAGCTATAAGTTCG | 58.496 | 40.000 | 16.90 | 0.00 | 44.81 | 3.95 |
3611 | 3849 | 8.297426 | TCACCAGCTATAAGTTCGTAATAGATG | 58.703 | 37.037 | 2.85 | 2.85 | 38.64 | 2.90 |
3629 | 3872 | 4.768583 | AGATGCTCTCTCCTTTCAACATC | 58.231 | 43.478 | 0.00 | 0.00 | 34.32 | 3.06 |
3765 | 4010 | 0.396811 | AAACAGTGAACGGAGGGAGG | 59.603 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3766 | 4011 | 1.481056 | AACAGTGAACGGAGGGAGGG | 61.481 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3767 | 4012 | 1.913762 | CAGTGAACGGAGGGAGGGT | 60.914 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
3768 | 4013 | 0.613853 | CAGTGAACGGAGGGAGGGTA | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3769 | 4014 | 0.324460 | AGTGAACGGAGGGAGGGTAG | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3771 | 4016 | 1.002069 | TGAACGGAGGGAGGGTAGTA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3774 | 4019 | 0.469518 | ACGGAGGGAGGGTAGTATGC | 60.470 | 60.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3804 | 4055 | 6.183360 | TGCAGTTGTTGGAACCTTTTAATCAT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
3805 | 4056 | 6.366061 | GCAGTTGTTGGAACCTTTTAATCATC | 59.634 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
3806 | 4057 | 7.432869 | CAGTTGTTGGAACCTTTTAATCATCA | 58.567 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
3807 | 4058 | 8.090214 | CAGTTGTTGGAACCTTTTAATCATCAT | 58.910 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
3808 | 4059 | 8.306761 | AGTTGTTGGAACCTTTTAATCATCATC | 58.693 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
3809 | 4060 | 7.773489 | TGTTGGAACCTTTTAATCATCATCA | 57.227 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3810 | 4061 | 8.365060 | TGTTGGAACCTTTTAATCATCATCAT | 57.635 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
3811 | 4062 | 8.469200 | TGTTGGAACCTTTTAATCATCATCATC | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
3812 | 4063 | 8.469200 | GTTGGAACCTTTTAATCATCATCATCA | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
3840 | 4110 | 6.298361 | TCAGAAACTCTCATTTCACCATCAA | 58.702 | 36.000 | 1.47 | 0.00 | 40.43 | 2.57 |
3843 | 4113 | 6.718454 | AGAAACTCTCATTTCACCATCAACAT | 59.282 | 34.615 | 1.47 | 0.00 | 40.43 | 2.71 |
3845 | 4115 | 5.563592 | ACTCTCATTTCACCATCAACATCA | 58.436 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
3846 | 4116 | 5.413833 | ACTCTCATTTCACCATCAACATCAC | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3847 | 4117 | 4.701651 | TCTCATTTCACCATCAACATCACC | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
3848 | 4118 | 4.405548 | TCATTTCACCATCAACATCACCA | 58.594 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
3849 | 4119 | 5.018149 | TCATTTCACCATCAACATCACCAT | 58.982 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
3850 | 4120 | 5.481122 | TCATTTCACCATCAACATCACCATT | 59.519 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3851 | 4121 | 5.389859 | TTTCACCATCAACATCACCATTC | 57.610 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
3852 | 4122 | 4.031636 | TCACCATCAACATCACCATTCA | 57.968 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
3853 | 4123 | 3.758023 | TCACCATCAACATCACCATTCAC | 59.242 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3854 | 4124 | 3.091545 | ACCATCAACATCACCATTCACC | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3855 | 4125 | 3.090790 | CCATCAACATCACCATTCACCA | 58.909 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
3856 | 4126 | 3.129813 | CCATCAACATCACCATTCACCAG | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
3857 | 4127 | 2.161855 | TCAACATCACCATTCACCAGC | 58.838 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3858 | 4128 | 1.887854 | CAACATCACCATTCACCAGCA | 59.112 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
3859 | 4129 | 1.830279 | ACATCACCATTCACCAGCAG | 58.170 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3860 | 4130 | 0.454600 | CATCACCATTCACCAGCAGC | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
3861 | 4131 | 0.330604 | ATCACCATTCACCAGCAGCT | 59.669 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3885 | 4156 | 4.226846 | AGCATCCCTTCTTTTCTGAGATGA | 59.773 | 41.667 | 0.00 | 0.00 | 33.16 | 2.92 |
3886 | 4157 | 4.575645 | GCATCCCTTCTTTTCTGAGATGAG | 59.424 | 45.833 | 0.00 | 0.00 | 33.16 | 2.90 |
3887 | 4158 | 5.628666 | GCATCCCTTCTTTTCTGAGATGAGA | 60.629 | 44.000 | 0.00 | 0.00 | 33.16 | 3.27 |
3888 | 4159 | 6.593807 | CATCCCTTCTTTTCTGAGATGAGAT | 58.406 | 40.000 | 0.00 | 0.00 | 33.16 | 2.75 |
3889 | 4160 | 5.987098 | TCCCTTCTTTTCTGAGATGAGATG | 58.013 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3890 | 4161 | 5.104610 | TCCCTTCTTTTCTGAGATGAGATGG | 60.105 | 44.000 | 15.01 | 15.01 | 33.68 | 3.51 |
3891 | 4162 | 5.104610 | CCCTTCTTTTCTGAGATGAGATGGA | 60.105 | 44.000 | 19.90 | 0.03 | 35.04 | 3.41 |
3917 | 4188 | 2.030893 | CACATCACATTTTCACCTGCGT | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 5.24 |
3919 | 4190 | 3.818210 | ACATCACATTTTCACCTGCGTAA | 59.182 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3934 | 4205 | 2.900122 | CGTAAGCAGAAATGGTGGTG | 57.100 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3943 | 4214 | 4.323417 | CAGAAATGGTGGTGCTAGTTACA | 58.677 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
3944 | 4215 | 4.393062 | CAGAAATGGTGGTGCTAGTTACAG | 59.607 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
3946 | 4217 | 0.323629 | TGGTGGTGCTAGTTACAGCC | 59.676 | 55.000 | 8.61 | 6.81 | 41.04 | 4.85 |
3947 | 4218 | 0.739813 | GGTGGTGCTAGTTACAGCCG | 60.740 | 60.000 | 4.82 | 0.00 | 41.04 | 5.52 |
3948 | 4219 | 0.739813 | GTGGTGCTAGTTACAGCCGG | 60.740 | 60.000 | 0.00 | 0.00 | 41.04 | 6.13 |
3949 | 4220 | 1.189524 | TGGTGCTAGTTACAGCCGGT | 61.190 | 55.000 | 1.90 | 0.00 | 41.04 | 5.28 |
3950 | 4221 | 0.739813 | GGTGCTAGTTACAGCCGGTG | 60.740 | 60.000 | 1.90 | 2.53 | 41.04 | 4.94 |
3963 | 4234 | 1.007502 | CCGGTGGTTGTTGCATGTG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
3964 | 4235 | 1.007502 | CGGTGGTTGTTGCATGTGG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
4060 | 4331 | 2.753296 | CTCTCCGCTGGATCTCATTTC | 58.247 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
4064 | 4335 | 2.628178 | TCCGCTGGATCTCATTTCGTAT | 59.372 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
4065 | 4336 | 2.989840 | CCGCTGGATCTCATTTCGTATC | 59.010 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4066 | 4337 | 2.989840 | CGCTGGATCTCATTTCGTATCC | 59.010 | 50.000 | 0.00 | 0.00 | 38.71 | 2.59 |
4067 | 4338 | 2.989840 | GCTGGATCTCATTTCGTATCCG | 59.010 | 50.000 | 0.00 | 0.00 | 40.71 | 4.18 |
4068 | 4339 | 3.553096 | GCTGGATCTCATTTCGTATCCGT | 60.553 | 47.826 | 0.00 | 0.00 | 40.71 | 4.69 |
4069 | 4340 | 4.230657 | CTGGATCTCATTTCGTATCCGTC | 58.769 | 47.826 | 0.00 | 0.00 | 40.71 | 4.79 |
4070 | 4341 | 3.005472 | TGGATCTCATTTCGTATCCGTCC | 59.995 | 47.826 | 0.00 | 0.00 | 40.71 | 4.79 |
4071 | 4342 | 3.005472 | GGATCTCATTTCGTATCCGTCCA | 59.995 | 47.826 | 0.00 | 0.00 | 35.01 | 4.02 |
4072 | 4343 | 4.322049 | GGATCTCATTTCGTATCCGTCCAT | 60.322 | 45.833 | 0.00 | 0.00 | 35.01 | 3.41 |
4073 | 4344 | 3.977427 | TCTCATTTCGTATCCGTCCATG | 58.023 | 45.455 | 0.00 | 0.00 | 35.01 | 3.66 |
4074 | 4345 | 3.634910 | TCTCATTTCGTATCCGTCCATGA | 59.365 | 43.478 | 0.00 | 0.00 | 35.01 | 3.07 |
4075 | 4346 | 3.713288 | TCATTTCGTATCCGTCCATGAC | 58.287 | 45.455 | 0.00 | 0.00 | 35.01 | 3.06 |
4076 | 4347 | 2.589798 | TTTCGTATCCGTCCATGACC | 57.410 | 50.000 | 0.00 | 0.00 | 35.01 | 4.02 |
4077 | 4348 | 1.476477 | TTCGTATCCGTCCATGACCA | 58.524 | 50.000 | 0.00 | 0.00 | 35.01 | 4.02 |
4078 | 4349 | 1.699730 | TCGTATCCGTCCATGACCAT | 58.300 | 50.000 | 0.00 | 0.00 | 35.01 | 3.55 |
4079 | 4350 | 1.339929 | TCGTATCCGTCCATGACCATG | 59.660 | 52.381 | 0.00 | 3.11 | 35.59 | 3.66 |
4080 | 4351 | 1.068588 | CGTATCCGTCCATGACCATGT | 59.931 | 52.381 | 8.93 | 0.00 | 37.11 | 3.21 |
4081 | 4352 | 2.755650 | GTATCCGTCCATGACCATGTC | 58.244 | 52.381 | 8.93 | 0.00 | 37.11 | 3.06 |
4082 | 4353 | 1.203237 | ATCCGTCCATGACCATGTCA | 58.797 | 50.000 | 8.93 | 0.00 | 46.90 | 3.58 |
4091 | 4362 | 0.541392 | TGACCATGTCATCCCTTCCG | 59.459 | 55.000 | 0.00 | 0.00 | 37.67 | 4.30 |
4092 | 4363 | 0.815615 | GACCATGTCATCCCTTCCGC | 60.816 | 60.000 | 0.00 | 0.00 | 32.09 | 5.54 |
4093 | 4364 | 1.526917 | CCATGTCATCCCTTCCGCC | 60.527 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
4094 | 4365 | 1.889105 | CATGTCATCCCTTCCGCCG | 60.889 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
4095 | 4366 | 3.757248 | ATGTCATCCCTTCCGCCGC | 62.757 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
4110 | 4381 | 3.490759 | CGCGCCACCTTGCAGTAG | 61.491 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4111 | 4382 | 2.358737 | GCGCCACCTTGCAGTAGT | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 2.73 |
4112 | 4383 | 1.079405 | GCGCCACCTTGCAGTAGTA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 1.82 |
4113 | 4384 | 1.084370 | GCGCCACCTTGCAGTAGTAG | 61.084 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4114 | 4385 | 0.246635 | CGCCACCTTGCAGTAGTAGT | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4115 | 4386 | 1.726853 | GCCACCTTGCAGTAGTAGTG | 58.273 | 55.000 | 0.17 | 0.17 | 0.00 | 2.74 |
4116 | 4387 | 1.002087 | GCCACCTTGCAGTAGTAGTGT | 59.998 | 52.381 | 6.84 | 0.00 | 0.00 | 3.55 |
4117 | 4388 | 2.931320 | GCCACCTTGCAGTAGTAGTGTC | 60.931 | 54.545 | 6.84 | 0.54 | 0.00 | 3.67 |
4118 | 4389 | 2.353803 | CCACCTTGCAGTAGTAGTGTCC | 60.354 | 54.545 | 6.84 | 0.00 | 0.00 | 4.02 |
4119 | 4390 | 2.299013 | CACCTTGCAGTAGTAGTGTCCA | 59.701 | 50.000 | 6.84 | 0.00 | 0.00 | 4.02 |
4120 | 4391 | 2.563179 | ACCTTGCAGTAGTAGTGTCCAG | 59.437 | 50.000 | 6.84 | 1.16 | 0.00 | 3.86 |
4121 | 4392 | 2.611518 | CTTGCAGTAGTAGTGTCCAGC | 58.388 | 52.381 | 6.84 | 0.00 | 0.00 | 4.85 |
4122 | 4393 | 1.924731 | TGCAGTAGTAGTGTCCAGCT | 58.075 | 50.000 | 6.84 | 0.00 | 0.00 | 4.24 |
4123 | 4394 | 2.248248 | TGCAGTAGTAGTGTCCAGCTT | 58.752 | 47.619 | 6.84 | 0.00 | 0.00 | 3.74 |
4124 | 4395 | 2.632996 | TGCAGTAGTAGTGTCCAGCTTT | 59.367 | 45.455 | 6.84 | 0.00 | 0.00 | 3.51 |
4125 | 4396 | 3.071023 | TGCAGTAGTAGTGTCCAGCTTTT | 59.929 | 43.478 | 6.84 | 0.00 | 0.00 | 2.27 |
4126 | 4397 | 3.433615 | GCAGTAGTAGTGTCCAGCTTTTG | 59.566 | 47.826 | 6.84 | 0.00 | 0.00 | 2.44 |
4127 | 4398 | 4.632153 | CAGTAGTAGTGTCCAGCTTTTGT | 58.368 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4128 | 4399 | 5.057149 | CAGTAGTAGTGTCCAGCTTTTGTT | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
4129 | 4400 | 6.220930 | CAGTAGTAGTGTCCAGCTTTTGTTA | 58.779 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4130 | 4401 | 6.704493 | CAGTAGTAGTGTCCAGCTTTTGTTAA | 59.296 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
4131 | 4402 | 7.225931 | CAGTAGTAGTGTCCAGCTTTTGTTAAA | 59.774 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
4132 | 4403 | 7.771826 | AGTAGTAGTGTCCAGCTTTTGTTAAAA | 59.228 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4133 | 4404 | 7.582667 | AGTAGTGTCCAGCTTTTGTTAAAAT | 57.417 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4134 | 4405 | 8.685838 | AGTAGTGTCCAGCTTTTGTTAAAATA | 57.314 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
4135 | 4406 | 9.127277 | AGTAGTGTCCAGCTTTTGTTAAAATAA | 57.873 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4136 | 4407 | 9.908152 | GTAGTGTCCAGCTTTTGTTAAAATAAT | 57.092 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4173 | 4444 | 9.939802 | TCTTCATAAAGTTTAGTTTCTACTCCC | 57.060 | 33.333 | 1.21 | 0.00 | 33.57 | 4.30 |
4174 | 4445 | 9.945904 | CTTCATAAAGTTTAGTTTCTACTCCCT | 57.054 | 33.333 | 1.21 | 0.00 | 35.78 | 4.20 |
4175 | 4446 | 9.939802 | TTCATAAAGTTTAGTTTCTACTCCCTC | 57.060 | 33.333 | 1.21 | 0.00 | 35.78 | 4.30 |
4176 | 4447 | 8.537858 | TCATAAAGTTTAGTTTCTACTCCCTCC | 58.462 | 37.037 | 1.21 | 0.00 | 35.78 | 4.30 |
4177 | 4448 | 5.402997 | AAGTTTAGTTTCTACTCCCTCCG | 57.597 | 43.478 | 0.00 | 0.00 | 35.78 | 4.63 |
4178 | 4449 | 4.414677 | AGTTTAGTTTCTACTCCCTCCGT | 58.585 | 43.478 | 0.00 | 0.00 | 35.78 | 4.69 |
4179 | 4450 | 4.462132 | AGTTTAGTTTCTACTCCCTCCGTC | 59.538 | 45.833 | 0.00 | 0.00 | 35.78 | 4.79 |
4180 | 4451 | 1.849977 | AGTTTCTACTCCCTCCGTCC | 58.150 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4181 | 4452 | 0.822811 | GTTTCTACTCCCTCCGTCCC | 59.177 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4182 | 4453 | 0.410663 | TTTCTACTCCCTCCGTCCCA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4183 | 4454 | 0.635009 | TTCTACTCCCTCCGTCCCAT | 59.365 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4184 | 4455 | 1.526315 | TCTACTCCCTCCGTCCCATA | 58.474 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4185 | 4456 | 1.424302 | TCTACTCCCTCCGTCCCATAG | 59.576 | 57.143 | 0.00 | 0.00 | 0.00 | 2.23 |
4186 | 4457 | 0.178970 | TACTCCCTCCGTCCCATAGC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 2.97 |
4187 | 4458 | 2.520982 | TCCCTCCGTCCCATAGCG | 60.521 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
4188 | 4459 | 2.838225 | CCCTCCGTCCCATAGCGT | 60.838 | 66.667 | 0.00 | 0.00 | 0.00 | 5.07 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
173 | 174 | 5.127682 | TCAGATCTGAAGATTTGATCCGTGA | 59.872 | 40.000 | 23.17 | 0.00 | 39.71 | 4.35 |
557 | 560 | 0.397941 | TCACTCTGCTGACCCTTTGG | 59.602 | 55.000 | 0.00 | 0.00 | 37.80 | 3.28 |
558 | 561 | 2.260844 | TTCACTCTGCTGACCCTTTG | 57.739 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
559 | 562 | 3.515602 | ATTTCACTCTGCTGACCCTTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
560 | 563 | 3.515602 | AATTTCACTCTGCTGACCCTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
561 | 564 | 3.515602 | AAATTTCACTCTGCTGACCCT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
562 | 565 | 4.590850 | AAAAATTTCACTCTGCTGACCC | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 4.46 |
587 | 590 | 4.946772 | TCAAATCACAAACTGACCTGTTCA | 59.053 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
588 | 591 | 5.499139 | TCAAATCACAAACTGACCTGTTC | 57.501 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
589 | 592 | 6.469782 | AATCAAATCACAAACTGACCTGTT | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
590 | 593 | 6.322201 | AGAAATCAAATCACAAACTGACCTGT | 59.678 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
591 | 594 | 6.639686 | CAGAAATCAAATCACAAACTGACCTG | 59.360 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
592 | 595 | 6.736794 | GCAGAAATCAAATCACAAACTGACCT | 60.737 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
593 | 596 | 5.403466 | GCAGAAATCAAATCACAAACTGACC | 59.597 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
594 | 597 | 5.403466 | GGCAGAAATCAAATCACAAACTGAC | 59.597 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
595 | 598 | 5.302568 | AGGCAGAAATCAAATCACAAACTGA | 59.697 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
596 | 599 | 5.535333 | AGGCAGAAATCAAATCACAAACTG | 58.465 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
597 | 600 | 5.302568 | TGAGGCAGAAATCAAATCACAAACT | 59.697 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
598 | 601 | 5.531634 | TGAGGCAGAAATCAAATCACAAAC | 58.468 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
599 | 602 | 5.279106 | CCTGAGGCAGAAATCAAATCACAAA | 60.279 | 40.000 | 0.00 | 0.00 | 32.44 | 2.83 |
600 | 603 | 4.219070 | CCTGAGGCAGAAATCAAATCACAA | 59.781 | 41.667 | 0.00 | 0.00 | 32.44 | 3.33 |
601 | 604 | 3.760151 | CCTGAGGCAGAAATCAAATCACA | 59.240 | 43.478 | 0.00 | 0.00 | 32.44 | 3.58 |
602 | 605 | 3.760684 | ACCTGAGGCAGAAATCAAATCAC | 59.239 | 43.478 | 0.00 | 0.00 | 32.44 | 3.06 |
603 | 606 | 4.012374 | GACCTGAGGCAGAAATCAAATCA | 58.988 | 43.478 | 0.00 | 0.00 | 32.44 | 2.57 |
604 | 607 | 4.012374 | TGACCTGAGGCAGAAATCAAATC | 58.988 | 43.478 | 0.00 | 0.00 | 32.44 | 2.17 |
605 | 608 | 4.038271 | TGACCTGAGGCAGAAATCAAAT | 57.962 | 40.909 | 0.00 | 0.00 | 32.44 | 2.32 |
606 | 609 | 3.507162 | TGACCTGAGGCAGAAATCAAA | 57.493 | 42.857 | 0.00 | 0.00 | 32.44 | 2.69 |
607 | 610 | 3.507162 | TTGACCTGAGGCAGAAATCAA | 57.493 | 42.857 | 0.00 | 0.00 | 32.44 | 2.57 |
608 | 611 | 3.507162 | TTTGACCTGAGGCAGAAATCA | 57.493 | 42.857 | 0.00 | 0.00 | 32.44 | 2.57 |
609 | 612 | 4.096081 | CAGATTTGACCTGAGGCAGAAATC | 59.904 | 45.833 | 16.71 | 16.71 | 34.90 | 2.17 |
610 | 613 | 4.015084 | CAGATTTGACCTGAGGCAGAAAT | 58.985 | 43.478 | 0.00 | 0.18 | 32.44 | 2.17 |
650 | 653 | 1.102978 | CCAAAATCACGGATGGGGTC | 58.897 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
726 | 743 | 2.355818 | CCTCTTCTTCTTTTACCCCCGG | 60.356 | 54.545 | 0.00 | 0.00 | 0.00 | 5.73 |
741 | 758 | 3.991367 | TCACGGTTCTCTTTTCCTCTTC | 58.009 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
743 | 760 | 4.127907 | GTTTCACGGTTCTCTTTTCCTCT | 58.872 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
744 | 761 | 3.250280 | GGTTTCACGGTTCTCTTTTCCTC | 59.750 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
745 | 762 | 3.211865 | GGTTTCACGGTTCTCTTTTCCT | 58.788 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
746 | 763 | 2.292569 | GGGTTTCACGGTTCTCTTTTCC | 59.707 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
747 | 764 | 2.946990 | TGGGTTTCACGGTTCTCTTTTC | 59.053 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
752 | 769 | 1.076332 | CGATGGGTTTCACGGTTCTC | 58.924 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1087 | 1133 | 2.358247 | GAAGCAAGGCGGACGGAA | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 4.30 |
1088 | 1134 | 4.388499 | GGAAGCAAGGCGGACGGA | 62.388 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
1089 | 1135 | 3.901797 | AAGGAAGCAAGGCGGACGG | 62.902 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1090 | 1136 | 2.358737 | AAGGAAGCAAGGCGGACG | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
1091 | 1137 | 2.041115 | GGAAGGAAGCAAGGCGGAC | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1092 | 1138 | 2.224159 | AGGAAGGAAGCAAGGCGGA | 61.224 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
1093 | 1139 | 2.042831 | CAGGAAGGAAGCAAGGCGG | 61.043 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
1096 | 1142 | 2.694760 | GCGCAGGAAGGAAGCAAGG | 61.695 | 63.158 | 0.30 | 0.00 | 0.00 | 3.61 |
1098 | 1144 | 0.895100 | ATTGCGCAGGAAGGAAGCAA | 60.895 | 50.000 | 11.31 | 3.64 | 44.16 | 3.91 |
1099 | 1145 | 1.303561 | ATTGCGCAGGAAGGAAGCA | 60.304 | 52.632 | 11.31 | 0.00 | 44.16 | 3.91 |
1527 | 1597 | 5.593679 | ATTGAAATCCATGGAGCAAGAAG | 57.406 | 39.130 | 21.33 | 0.00 | 0.00 | 2.85 |
1586 | 1663 | 1.375908 | CGGCTAGAACCAGCAAGCA | 60.376 | 57.895 | 0.00 | 0.00 | 43.67 | 3.91 |
1590 | 1667 | 1.134699 | CATCTTCGGCTAGAACCAGCA | 60.135 | 52.381 | 0.00 | 0.00 | 43.67 | 4.41 |
1592 | 1669 | 2.796383 | CGTCATCTTCGGCTAGAACCAG | 60.796 | 54.545 | 0.00 | 0.00 | 34.66 | 4.00 |
1626 | 1703 | 2.108566 | CGGCTCTCCCATCTGCAG | 59.891 | 66.667 | 7.63 | 7.63 | 0.00 | 4.41 |
1664 | 1741 | 2.095718 | GGTCTCGTCCTCAATTTTGCAC | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1685 | 1762 | 3.612247 | CTCCACCTTGGGCCTCACG | 62.612 | 68.421 | 4.53 | 0.00 | 38.32 | 4.35 |
1921 | 2004 | 4.586001 | ACTGACAACTTTTCATTCAGGCAT | 59.414 | 37.500 | 0.00 | 0.00 | 38.42 | 4.40 |
1959 | 2042 | 0.110056 | CACAATTGAGGACAGCGTGC | 60.110 | 55.000 | 13.59 | 0.00 | 0.00 | 5.34 |
2077 | 2160 | 7.504238 | ACACAAAAATGTTATGTTCCCAGTCTA | 59.496 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2159 | 2246 | 0.099436 | GCGCTTTGCCAATCACCTAG | 59.901 | 55.000 | 0.00 | 0.00 | 37.76 | 3.02 |
2252 | 2339 | 4.215827 | ACAAATTATTTTGGTACCGCGACA | 59.784 | 37.500 | 8.23 | 0.00 | 45.34 | 4.35 |
2256 | 2343 | 5.886992 | AGCTACAAATTATTTTGGTACCGC | 58.113 | 37.500 | 7.57 | 0.00 | 45.34 | 5.68 |
2284 | 2371 | 4.210120 | CAGCGAAAGGATTAGAGAATTCGG | 59.790 | 45.833 | 0.00 | 0.00 | 39.81 | 4.30 |
2303 | 2390 | 6.049263 | AGAACTGAAAAGAGTAAAACAGCG | 57.951 | 37.500 | 0.00 | 0.00 | 0.00 | 5.18 |
2316 | 2403 | 4.889409 | AGCTTCATGGACAAGAACTGAAAA | 59.111 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2406 | 2494 | 3.181377 | GCGAGAAGATGCGAGATAAACTG | 59.819 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
2417 | 2505 | 1.061570 | CCAAAGCGCGAGAAGATGC | 59.938 | 57.895 | 12.10 | 0.00 | 0.00 | 3.91 |
2418 | 2506 | 1.061570 | GCCAAAGCGCGAGAAGATG | 59.938 | 57.895 | 12.10 | 0.00 | 0.00 | 2.90 |
2421 | 2509 | 0.458543 | TAGAGCCAAAGCGCGAGAAG | 60.459 | 55.000 | 12.10 | 0.00 | 44.54 | 2.85 |
2423 | 2511 | 0.528466 | CATAGAGCCAAAGCGCGAGA | 60.528 | 55.000 | 12.10 | 0.00 | 44.54 | 4.04 |
2424 | 2512 | 0.528466 | TCATAGAGCCAAAGCGCGAG | 60.528 | 55.000 | 12.10 | 0.00 | 44.54 | 5.03 |
2426 | 2514 | 0.726827 | TTTCATAGAGCCAAAGCGCG | 59.273 | 50.000 | 0.00 | 0.00 | 44.54 | 6.86 |
2427 | 2515 | 1.468520 | TGTTTCATAGAGCCAAAGCGC | 59.531 | 47.619 | 0.00 | 0.00 | 46.67 | 5.92 |
2428 | 2516 | 3.829886 | TTGTTTCATAGAGCCAAAGCG | 57.170 | 42.857 | 0.00 | 0.00 | 46.67 | 4.68 |
2481 | 2570 | 1.338105 | CCGAGTGCTTGGTTCATCTGA | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
2589 | 2678 | 0.105039 | GGTTCTCCATAGCACCCGAG | 59.895 | 60.000 | 0.00 | 0.00 | 33.30 | 4.63 |
2678 | 2767 | 3.645884 | CAGTTTTCCAGGCAATCAACAG | 58.354 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2763 | 2882 | 3.822735 | CCAGAAATCCTGTTGCTGAGAAA | 59.177 | 43.478 | 0.00 | 0.00 | 41.33 | 2.52 |
2773 | 2892 | 0.909610 | TCGCCTCCCAGAAATCCTGT | 60.910 | 55.000 | 0.00 | 0.00 | 41.33 | 4.00 |
2806 | 2925 | 0.882042 | GCTCGTGGTCCATATGCAGG | 60.882 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2875 | 2994 | 3.346315 | AGCAACGATCCATCATTGTTCA | 58.654 | 40.909 | 0.00 | 0.00 | 37.03 | 3.18 |
2877 | 2996 | 3.674138 | GCAAGCAACGATCCATCATTGTT | 60.674 | 43.478 | 0.00 | 0.00 | 39.43 | 2.83 |
2879 | 2998 | 2.098607 | AGCAAGCAACGATCCATCATTG | 59.901 | 45.455 | 0.00 | 0.00 | 33.51 | 2.82 |
2880 | 2999 | 2.098607 | CAGCAAGCAACGATCCATCATT | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2883 | 3002 | 0.248377 | GCAGCAAGCAACGATCCATC | 60.248 | 55.000 | 0.00 | 0.00 | 44.79 | 3.51 |
2933 | 3052 | 1.333435 | CGTAAGCCGAACCACACAAAC | 60.333 | 52.381 | 0.00 | 0.00 | 39.56 | 2.93 |
2962 | 3090 | 3.198417 | TCTGGATGATCTGCTGCTTGTAA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
3151 | 3279 | 0.398098 | TTCTAGTGTCCCCGATCCCC | 60.398 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3171 | 3299 | 2.265367 | TGGTAGTTCAGCTGGGATTCA | 58.735 | 47.619 | 15.13 | 3.30 | 0.00 | 2.57 |
3179 | 3307 | 2.023501 | AGGAGAGGATGGTAGTTCAGCT | 60.024 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3196 | 3324 | 4.560128 | TCAACACGAGAAGAATCAAGGAG | 58.440 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
3197 | 3325 | 4.600692 | TCAACACGAGAAGAATCAAGGA | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
3198 | 3326 | 4.931601 | TCATCAACACGAGAAGAATCAAGG | 59.068 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
3294 | 3424 | 3.195661 | GCCGAGTTCTTACACATTAGGG | 58.804 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3433 | 3669 | 1.304796 | TTGGCGGCCCAATCATTGA | 60.305 | 52.632 | 17.97 | 0.00 | 46.01 | 2.57 |
3443 | 3679 | 2.490509 | ACTTAACTGTAATTTGGCGGCC | 59.509 | 45.455 | 13.32 | 13.32 | 0.00 | 6.13 |
3502 | 3738 | 3.676172 | CGCTAAACCGTGATTGACAAGTA | 59.324 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3551 | 3788 | 2.163010 | CACTGTGATTGGTGAGCATTCC | 59.837 | 50.000 | 0.32 | 0.00 | 35.69 | 3.01 |
3587 | 3825 | 7.039644 | AGCATCTATTACGAACTTATAGCTGGT | 60.040 | 37.037 | 0.00 | 0.00 | 29.15 | 4.00 |
3611 | 3849 | 6.344500 | TCTTATGATGTTGAAAGGAGAGAGC | 58.656 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3652 | 3896 | 9.042008 | GCGTCTATATACTTTCAATTCAGGAAA | 57.958 | 33.333 | 0.00 | 0.00 | 33.52 | 3.13 |
3653 | 3897 | 7.381408 | CGCGTCTATATACTTTCAATTCAGGAA | 59.619 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3654 | 3898 | 6.861572 | CGCGTCTATATACTTTCAATTCAGGA | 59.138 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
3655 | 3899 | 6.641314 | ACGCGTCTATATACTTTCAATTCAGG | 59.359 | 38.462 | 5.58 | 0.00 | 0.00 | 3.86 |
3732 | 3977 | 5.728351 | TCACTGTTTAAAGACGTTTCAGG | 57.272 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
3745 | 3990 | 1.621814 | CCTCCCTCCGTTCACTGTTTA | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
3784 | 4035 | 8.187913 | TGATGATGATTAAAAGGTTCCAACAA | 57.812 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
3804 | 4055 | 7.120923 | TGAGAGTTTCTGATGATGATGATGA | 57.879 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3805 | 4056 | 7.971183 | ATGAGAGTTTCTGATGATGATGATG | 57.029 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3806 | 4057 | 8.982091 | AAATGAGAGTTTCTGATGATGATGAT | 57.018 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
3807 | 4058 | 8.044908 | TGAAATGAGAGTTTCTGATGATGATGA | 58.955 | 33.333 | 0.00 | 0.00 | 38.58 | 2.92 |
3808 | 4059 | 8.123575 | GTGAAATGAGAGTTTCTGATGATGATG | 58.876 | 37.037 | 0.00 | 0.00 | 38.58 | 3.07 |
3809 | 4060 | 7.282675 | GGTGAAATGAGAGTTTCTGATGATGAT | 59.717 | 37.037 | 0.00 | 0.00 | 38.58 | 2.45 |
3810 | 4061 | 6.596888 | GGTGAAATGAGAGTTTCTGATGATGA | 59.403 | 38.462 | 0.00 | 0.00 | 38.58 | 2.92 |
3811 | 4062 | 6.373495 | TGGTGAAATGAGAGTTTCTGATGATG | 59.627 | 38.462 | 0.00 | 0.00 | 38.58 | 3.07 |
3812 | 4063 | 6.479006 | TGGTGAAATGAGAGTTTCTGATGAT | 58.521 | 36.000 | 0.00 | 0.00 | 38.58 | 2.45 |
3840 | 4110 | 1.830279 | CTGCTGGTGAATGGTGATGT | 58.170 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3843 | 4113 | 0.983467 | TAGCTGCTGGTGAATGGTGA | 59.017 | 50.000 | 13.43 | 0.00 | 0.00 | 4.02 |
3845 | 4115 | 0.393537 | GCTAGCTGCTGGTGAATGGT | 60.394 | 55.000 | 13.43 | 0.00 | 38.95 | 3.55 |
3846 | 4116 | 0.393402 | TGCTAGCTGCTGGTGAATGG | 60.393 | 55.000 | 17.23 | 0.00 | 43.37 | 3.16 |
3847 | 4117 | 1.602851 | GATGCTAGCTGCTGGTGAATG | 59.397 | 52.381 | 17.23 | 0.00 | 43.37 | 2.67 |
3848 | 4118 | 1.476471 | GGATGCTAGCTGCTGGTGAAT | 60.476 | 52.381 | 17.23 | 5.12 | 43.37 | 2.57 |
3849 | 4119 | 0.107508 | GGATGCTAGCTGCTGGTGAA | 60.108 | 55.000 | 17.23 | 0.00 | 43.37 | 3.18 |
3850 | 4120 | 1.524002 | GGATGCTAGCTGCTGGTGA | 59.476 | 57.895 | 17.23 | 0.62 | 43.37 | 4.02 |
3851 | 4121 | 1.525535 | GGGATGCTAGCTGCTGGTG | 60.526 | 63.158 | 17.23 | 3.64 | 43.37 | 4.17 |
3852 | 4122 | 1.277580 | AAGGGATGCTAGCTGCTGGT | 61.278 | 55.000 | 17.23 | 0.00 | 43.37 | 4.00 |
3853 | 4123 | 0.534652 | GAAGGGATGCTAGCTGCTGG | 60.535 | 60.000 | 17.23 | 11.05 | 43.37 | 4.85 |
3854 | 4124 | 0.469070 | AGAAGGGATGCTAGCTGCTG | 59.531 | 55.000 | 17.23 | 3.55 | 43.37 | 4.41 |
3855 | 4125 | 1.211456 | AAGAAGGGATGCTAGCTGCT | 58.789 | 50.000 | 17.23 | 7.57 | 43.37 | 4.24 |
3856 | 4126 | 2.049888 | AAAGAAGGGATGCTAGCTGC | 57.950 | 50.000 | 17.23 | 7.56 | 43.25 | 5.25 |
3857 | 4127 | 3.626670 | CAGAAAAGAAGGGATGCTAGCTG | 59.373 | 47.826 | 17.23 | 0.00 | 0.00 | 4.24 |
3858 | 4128 | 3.521126 | TCAGAAAAGAAGGGATGCTAGCT | 59.479 | 43.478 | 17.23 | 0.83 | 0.00 | 3.32 |
3859 | 4129 | 3.876320 | CTCAGAAAAGAAGGGATGCTAGC | 59.124 | 47.826 | 8.10 | 8.10 | 0.00 | 3.42 |
3860 | 4130 | 5.350504 | TCTCAGAAAAGAAGGGATGCTAG | 57.649 | 43.478 | 0.00 | 0.00 | 0.00 | 3.42 |
3861 | 4131 | 5.426509 | TCATCTCAGAAAAGAAGGGATGCTA | 59.573 | 40.000 | 0.00 | 0.00 | 32.03 | 3.49 |
3867 | 4137 | 5.104610 | TCCATCTCATCTCAGAAAAGAAGGG | 60.105 | 44.000 | 9.78 | 7.38 | 0.00 | 3.95 |
3888 | 4159 | 4.278170 | GTGAAAATGTGATGTGGAGTTCCA | 59.722 | 41.667 | 0.00 | 0.00 | 45.30 | 3.53 |
3889 | 4160 | 4.321230 | GGTGAAAATGTGATGTGGAGTTCC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
3890 | 4161 | 4.520492 | AGGTGAAAATGTGATGTGGAGTTC | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3891 | 4162 | 4.279169 | CAGGTGAAAATGTGATGTGGAGTT | 59.721 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3917 | 4188 | 2.584835 | AGCACCACCATTTCTGCTTA | 57.415 | 45.000 | 0.00 | 0.00 | 36.57 | 3.09 |
3919 | 4190 | 1.352352 | ACTAGCACCACCATTTCTGCT | 59.648 | 47.619 | 0.00 | 0.00 | 42.60 | 4.24 |
3931 | 4202 | 0.739813 | CACCGGCTGTAACTAGCACC | 60.740 | 60.000 | 0.00 | 0.00 | 45.46 | 5.01 |
3934 | 4205 | 0.036671 | AACCACCGGCTGTAACTAGC | 60.037 | 55.000 | 0.00 | 0.00 | 42.94 | 3.42 |
3936 | 4207 | 1.050204 | ACAACCACCGGCTGTAACTA | 58.950 | 50.000 | 0.00 | 0.00 | 29.45 | 2.24 |
3943 | 4214 | 2.203480 | ATGCAACAACCACCGGCT | 60.203 | 55.556 | 0.00 | 0.00 | 0.00 | 5.52 |
3944 | 4215 | 2.049248 | CATGCAACAACCACCGGC | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
3946 | 4217 | 1.007502 | CCACATGCAACAACCACCG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
3947 | 4218 | 1.367102 | CCCACATGCAACAACCACC | 59.633 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
3948 | 4219 | 0.249405 | CACCCACATGCAACAACCAC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3949 | 4220 | 1.398174 | CCACCCACATGCAACAACCA | 61.398 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3950 | 4221 | 1.367102 | CCACCCACATGCAACAACC | 59.633 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
3963 | 4234 | 1.823169 | TTCTCCTACGTGCACCACCC | 61.823 | 60.000 | 12.15 | 0.00 | 0.00 | 4.61 |
3964 | 4235 | 0.389948 | CTTCTCCTACGTGCACCACC | 60.390 | 60.000 | 12.15 | 0.00 | 0.00 | 4.61 |
4064 | 4335 | 2.677508 | TGACATGGTCATGGACGGA | 58.322 | 52.632 | 14.49 | 0.00 | 42.91 | 4.69 |
4072 | 4343 | 0.541392 | CGGAAGGGATGACATGGTCA | 59.459 | 55.000 | 1.05 | 1.05 | 46.90 | 4.02 |
4073 | 4344 | 0.815615 | GCGGAAGGGATGACATGGTC | 60.816 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4074 | 4345 | 1.224592 | GCGGAAGGGATGACATGGT | 59.775 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
4075 | 4346 | 1.526917 | GGCGGAAGGGATGACATGG | 60.527 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
4076 | 4347 | 1.889105 | CGGCGGAAGGGATGACATG | 60.889 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
4077 | 4348 | 2.505982 | CGGCGGAAGGGATGACAT | 59.494 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
4078 | 4349 | 4.467084 | GCGGCGGAAGGGATGACA | 62.467 | 66.667 | 9.78 | 0.00 | 0.00 | 3.58 |
4093 | 4364 | 2.829043 | TACTACTGCAAGGTGGCGCG | 62.829 | 60.000 | 0.00 | 0.00 | 39.30 | 6.86 |
4094 | 4365 | 1.079405 | TACTACTGCAAGGTGGCGC | 60.079 | 57.895 | 0.00 | 0.00 | 39.30 | 6.53 |
4095 | 4366 | 0.246635 | ACTACTACTGCAAGGTGGCG | 59.753 | 55.000 | 0.00 | 0.00 | 39.30 | 5.69 |
4096 | 4367 | 1.002087 | ACACTACTACTGCAAGGTGGC | 59.998 | 52.381 | 0.00 | 0.00 | 39.30 | 5.01 |
4097 | 4368 | 2.353803 | GGACACTACTACTGCAAGGTGG | 60.354 | 54.545 | 0.00 | 0.00 | 39.30 | 4.61 |
4098 | 4369 | 2.299013 | TGGACACTACTACTGCAAGGTG | 59.701 | 50.000 | 0.00 | 0.00 | 39.30 | 4.00 |
4099 | 4370 | 2.563179 | CTGGACACTACTACTGCAAGGT | 59.437 | 50.000 | 0.00 | 0.00 | 39.30 | 3.50 |
4100 | 4371 | 2.675317 | GCTGGACACTACTACTGCAAGG | 60.675 | 54.545 | 0.00 | 0.00 | 39.30 | 3.61 |
4101 | 4372 | 2.232452 | AGCTGGACACTACTACTGCAAG | 59.768 | 50.000 | 0.00 | 0.00 | 42.29 | 4.01 |
4102 | 4373 | 2.248248 | AGCTGGACACTACTACTGCAA | 58.752 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
4103 | 4374 | 1.924731 | AGCTGGACACTACTACTGCA | 58.075 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
4104 | 4375 | 3.320673 | AAAGCTGGACACTACTACTGC | 57.679 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
4105 | 4376 | 4.632153 | ACAAAAGCTGGACACTACTACTG | 58.368 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
4106 | 4377 | 4.957684 | ACAAAAGCTGGACACTACTACT | 57.042 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4107 | 4378 | 7.486802 | TTTAACAAAAGCTGGACACTACTAC | 57.513 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4108 | 4379 | 8.685838 | ATTTTAACAAAAGCTGGACACTACTA | 57.314 | 30.769 | 0.00 | 0.00 | 33.22 | 1.82 |
4109 | 4380 | 7.582667 | ATTTTAACAAAAGCTGGACACTACT | 57.417 | 32.000 | 0.00 | 0.00 | 33.22 | 2.57 |
4110 | 4381 | 9.908152 | ATTATTTTAACAAAAGCTGGACACTAC | 57.092 | 29.630 | 0.00 | 0.00 | 33.22 | 2.73 |
4147 | 4418 | 9.939802 | GGGAGTAGAAACTAAACTTTATGAAGA | 57.060 | 33.333 | 3.94 | 0.00 | 35.56 | 2.87 |
4148 | 4419 | 9.945904 | AGGGAGTAGAAACTAAACTTTATGAAG | 57.054 | 33.333 | 0.00 | 0.00 | 35.56 | 3.02 |
4149 | 4420 | 9.939802 | GAGGGAGTAGAAACTAAACTTTATGAA | 57.060 | 33.333 | 0.00 | 0.00 | 35.56 | 2.57 |
4150 | 4421 | 8.537858 | GGAGGGAGTAGAAACTAAACTTTATGA | 58.462 | 37.037 | 0.00 | 0.00 | 35.56 | 2.15 |
4151 | 4422 | 7.491696 | CGGAGGGAGTAGAAACTAAACTTTATG | 59.508 | 40.741 | 0.00 | 0.00 | 35.56 | 1.90 |
4152 | 4423 | 7.179872 | ACGGAGGGAGTAGAAACTAAACTTTAT | 59.820 | 37.037 | 0.00 | 0.00 | 35.56 | 1.40 |
4153 | 4424 | 6.494835 | ACGGAGGGAGTAGAAACTAAACTTTA | 59.505 | 38.462 | 0.00 | 0.00 | 35.56 | 1.85 |
4154 | 4425 | 5.306419 | ACGGAGGGAGTAGAAACTAAACTTT | 59.694 | 40.000 | 0.00 | 0.00 | 35.56 | 2.66 |
4155 | 4426 | 4.837298 | ACGGAGGGAGTAGAAACTAAACTT | 59.163 | 41.667 | 0.00 | 0.00 | 35.56 | 2.66 |
4156 | 4427 | 4.414677 | ACGGAGGGAGTAGAAACTAAACT | 58.585 | 43.478 | 0.00 | 0.00 | 35.56 | 2.66 |
4157 | 4428 | 4.381398 | GGACGGAGGGAGTAGAAACTAAAC | 60.381 | 50.000 | 0.00 | 0.00 | 35.56 | 2.01 |
4158 | 4429 | 3.766051 | GGACGGAGGGAGTAGAAACTAAA | 59.234 | 47.826 | 0.00 | 0.00 | 35.56 | 1.85 |
4159 | 4430 | 3.359950 | GGACGGAGGGAGTAGAAACTAA | 58.640 | 50.000 | 0.00 | 0.00 | 35.56 | 2.24 |
4160 | 4431 | 2.357569 | GGGACGGAGGGAGTAGAAACTA | 60.358 | 54.545 | 0.00 | 0.00 | 35.56 | 2.24 |
4161 | 4432 | 1.619160 | GGGACGGAGGGAGTAGAAACT | 60.619 | 57.143 | 0.00 | 0.00 | 39.21 | 2.66 |
4162 | 4433 | 0.822811 | GGGACGGAGGGAGTAGAAAC | 59.177 | 60.000 | 0.00 | 0.00 | 0.00 | 2.78 |
4163 | 4434 | 0.410663 | TGGGACGGAGGGAGTAGAAA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4164 | 4435 | 0.635009 | ATGGGACGGAGGGAGTAGAA | 59.365 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4165 | 4436 | 1.424302 | CTATGGGACGGAGGGAGTAGA | 59.576 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
4166 | 4437 | 1.912417 | CTATGGGACGGAGGGAGTAG | 58.088 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4167 | 4438 | 0.178970 | GCTATGGGACGGAGGGAGTA | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4168 | 4439 | 1.457831 | GCTATGGGACGGAGGGAGT | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
4169 | 4440 | 2.565645 | CGCTATGGGACGGAGGGAG | 61.566 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
4170 | 4441 | 2.520982 | CGCTATGGGACGGAGGGA | 60.521 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
4171 | 4442 | 2.838225 | ACGCTATGGGACGGAGGG | 60.838 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.