Multiple sequence alignment - TraesCS5A01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G278900 chr5A 100.000 2795 0 0 1 2795 488037461 488040255 0.000000e+00 5162.0
1 TraesCS5A01G278900 chr5A 87.304 638 56 15 1001 1620 488050954 488051584 0.000000e+00 706.0
2 TraesCS5A01G278900 chr5A 96.793 343 10 1 2039 2381 415358878 415358537 3.120000e-159 571.0
3 TraesCS5A01G278900 chr5A 85.772 492 48 9 1162 1645 488047430 488047907 4.160000e-138 501.0
4 TraesCS5A01G278900 chr5B 92.414 1595 81 21 470 2041 464144000 464145577 0.000000e+00 2239.0
5 TraesCS5A01G278900 chr5B 86.275 663 67 15 1001 1645 464171030 464171686 0.000000e+00 699.0
6 TraesCS5A01G278900 chr5B 85.494 648 69 17 993 1620 464195301 464195943 0.000000e+00 652.0
7 TraesCS5A01G278900 chr5B 91.091 449 28 6 1 439 513205246 513205692 5.150000e-167 597.0
8 TraesCS5A01G278900 chr5B 93.878 343 21 0 2039 2381 70403453 70403111 4.130000e-143 518.0
9 TraesCS5A01G278900 chr5B 96.313 217 7 1 2380 2595 464145568 464145784 3.420000e-94 355.0
10 TraesCS5A01G278900 chr5B 95.918 98 4 0 2698 2795 464145781 464145878 2.880000e-35 159.0
11 TraesCS5A01G278900 chr5D 94.376 1458 56 11 602 2041 386209382 386210831 0.000000e+00 2215.0
12 TraesCS5A01G278900 chr5D 86.295 664 65 15 1001 1645 386512909 386513565 0.000000e+00 699.0
13 TraesCS5A01G278900 chr5D 86.250 640 60 20 1001 1620 386589496 386590127 0.000000e+00 669.0
14 TraesCS5A01G278900 chr5D 97.794 136 2 1 2380 2514 386210822 386210957 1.670000e-57 233.0
15 TraesCS5A01G278900 chr5D 94.872 78 4 0 2698 2775 386212532 386212609 3.780000e-24 122.0
16 TraesCS5A01G278900 chr5D 94.737 76 4 0 2516 2591 386210985 386211060 4.890000e-23 119.0
17 TraesCS5A01G278900 chr1A 94.855 447 15 2 1 439 27204805 27204359 0.000000e+00 691.0
18 TraesCS5A01G278900 chr2B 92.650 449 21 6 1 439 547838844 547838398 1.090000e-178 636.0
19 TraesCS5A01G278900 chr2B 94.253 348 16 1 2038 2381 64106863 64106516 1.910000e-146 529.0
20 TraesCS5A01G278900 chr2B 88.406 69 5 3 2593 2659 134754317 134754250 2.310000e-11 80.5
21 TraesCS5A01G278900 chr2A 94.595 407 13 3 42 439 306141565 306141159 3.060000e-174 621.0
22 TraesCS5A01G278900 chr2A 100.000 43 0 0 1 43 306141865 306141823 2.310000e-11 80.5
23 TraesCS5A01G278900 chr1B 91.982 449 24 8 1 439 453517940 453517494 1.100000e-173 619.0
24 TraesCS5A01G278900 chr1B 90.909 44 4 0 2658 2701 272387379 272387336 3.010000e-05 60.2
25 TraesCS5A01G278900 chr4B 91.759 449 25 8 1 439 31816553 31816107 5.120000e-172 614.0
26 TraesCS5A01G278900 chr3B 91.759 449 24 7 1 439 703901122 703900677 1.840000e-171 612.0
27 TraesCS5A01G278900 chr7B 90.646 449 30 8 1 439 606574899 606574453 1.120000e-163 586.0
28 TraesCS5A01G278900 chr7B 90.000 50 5 0 2652 2701 654122587 654122636 6.460000e-07 65.8
29 TraesCS5A01G278900 chr6D 97.085 343 10 0 2039 2381 457554588 457554930 1.870000e-161 579.0
30 TraesCS5A01G278900 chr4A 96.542 347 11 1 2036 2381 596529855 596530201 8.680000e-160 573.0
31 TraesCS5A01G278900 chr4A 88.679 53 6 0 2652 2704 434734454 434734506 6.460000e-07 65.8
32 TraesCS5A01G278900 chr3A 95.918 343 14 0 2039 2381 725981606 725981948 8.750000e-155 556.0
33 TraesCS5A01G278900 chr7A 95.821 335 14 0 2039 2373 626322988 626322654 2.450000e-150 542.0
34 TraesCS5A01G278900 chr6B 94.737 342 18 0 2040 2381 691753222 691752881 1.470000e-147 532.0
35 TraesCS5A01G278900 chr6B 92.424 66 5 0 2593 2658 15392222 15392157 8.240000e-16 95.3
36 TraesCS5A01G278900 chr6B 89.831 59 6 0 2593 2651 142897121 142897179 2.990000e-10 76.8
37 TraesCS5A01G278900 chr6B 90.909 44 4 0 2658 2701 532167941 532167984 3.010000e-05 60.2
38 TraesCS5A01G278900 chr7D 94.236 347 20 0 2035 2381 73230172 73230518 5.300000e-147 531.0
39 TraesCS5A01G278900 chr7D 75.538 511 117 5 1082 1585 230941852 230942361 7.730000e-61 244.0
40 TraesCS5A01G278900 chr1D 93.182 44 1 2 2614 2657 490928768 490928727 2.320000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G278900 chr5A 488037461 488040255 2794 False 5162.000000 5162 100.000000 1 2795 1 chr5A.!!$F1 2794
1 TraesCS5A01G278900 chr5A 488047430 488051584 4154 False 603.500000 706 86.538000 1001 1645 2 chr5A.!!$F2 644
2 TraesCS5A01G278900 chr5B 464144000 464145878 1878 False 917.666667 2239 94.881667 470 2795 3 chr5B.!!$F4 2325
3 TraesCS5A01G278900 chr5B 464171030 464171686 656 False 699.000000 699 86.275000 1001 1645 1 chr5B.!!$F1 644
4 TraesCS5A01G278900 chr5B 464195301 464195943 642 False 652.000000 652 85.494000 993 1620 1 chr5B.!!$F2 627
5 TraesCS5A01G278900 chr5D 386512909 386513565 656 False 699.000000 699 86.295000 1001 1645 1 chr5D.!!$F1 644
6 TraesCS5A01G278900 chr5D 386209382 386212609 3227 False 672.250000 2215 95.444750 602 2775 4 chr5D.!!$F3 2173
7 TraesCS5A01G278900 chr5D 386589496 386590127 631 False 669.000000 669 86.250000 1001 1620 1 chr5D.!!$F2 619
8 TraesCS5A01G278900 chr2A 306141159 306141865 706 True 350.750000 621 97.297500 1 439 2 chr2A.!!$R1 438
9 TraesCS5A01G278900 chr7D 230941852 230942361 509 False 244.000000 244 75.538000 1082 1585 1 chr7D.!!$F2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 558 1.272781 GCTGGACACTCGATTCTTCG 58.727 55.0 0.0 0.0 46.87 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 4663 0.107703 ATGATGTACCGCCCTGTGTG 60.108 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 365 8.918202 ATTTCACCACTTCTACATTTCAGTTA 57.082 30.769 0.00 0.00 0.00 2.24
247 515 4.156922 TCGGAGAGAGTCAGAAATCAGTTC 59.843 45.833 0.00 0.00 36.38 3.01
290 558 1.272781 GCTGGACACTCGATTCTTCG 58.727 55.000 0.00 0.00 46.87 3.79
362 630 6.812656 TGATTGGCATGACAACATTTTGTATC 59.187 34.615 18.26 7.48 46.43 2.24
439 708 4.448060 TGATAATTGTTTGTGACGTGCGTA 59.552 37.500 0.00 0.00 0.00 4.42
440 709 3.677190 AATTGTTTGTGACGTGCGTAA 57.323 38.095 0.00 0.00 0.00 3.18
441 710 2.438933 TTGTTTGTGACGTGCGTAAC 57.561 45.000 5.33 5.33 0.00 2.50
443 712 2.807044 TGTTTGTGACGTGCGTAACTA 58.193 42.857 12.72 3.34 30.88 2.24
444 713 2.790448 TGTTTGTGACGTGCGTAACTAG 59.210 45.455 12.72 0.00 30.88 2.57
445 714 2.780065 TTGTGACGTGCGTAACTAGT 57.220 45.000 12.72 0.00 30.88 2.57
446 715 2.780065 TGTGACGTGCGTAACTAGTT 57.220 45.000 13.68 13.68 30.88 2.24
447 716 3.082698 TGTGACGTGCGTAACTAGTTT 57.917 42.857 14.49 0.00 30.88 2.66
448 717 4.221926 TGTGACGTGCGTAACTAGTTTA 57.778 40.909 14.49 0.00 30.88 2.01
450 719 5.221880 TGTGACGTGCGTAACTAGTTTATT 58.778 37.500 14.49 0.00 30.88 1.40
451 720 5.691305 TGTGACGTGCGTAACTAGTTTATTT 59.309 36.000 14.49 0.00 30.88 1.40
452 721 6.200665 TGTGACGTGCGTAACTAGTTTATTTT 59.799 34.615 14.49 0.00 30.88 1.82
453 722 7.380870 TGTGACGTGCGTAACTAGTTTATTTTA 59.619 33.333 14.49 0.00 30.88 1.52
454 723 8.213812 GTGACGTGCGTAACTAGTTTATTTTAA 58.786 33.333 14.49 0.00 0.00 1.52
455 724 8.427012 TGACGTGCGTAACTAGTTTATTTTAAG 58.573 33.333 14.49 0.00 0.00 1.85
456 725 8.298030 ACGTGCGTAACTAGTTTATTTTAAGT 57.702 30.769 14.49 2.87 0.00 2.24
457 726 9.405587 ACGTGCGTAACTAGTTTATTTTAAGTA 57.594 29.630 14.49 0.00 0.00 2.24
458 727 9.877096 CGTGCGTAACTAGTTTATTTTAAGTAG 57.123 33.333 14.49 0.00 37.17 2.57
460 729 9.369904 TGCGTAACTAGTTTATTTTAAGTAGGG 57.630 33.333 14.49 0.00 36.02 3.53
461 730 9.586435 GCGTAACTAGTTTATTTTAAGTAGGGA 57.414 33.333 14.49 0.00 36.02 4.20
478 747 2.763448 AGGGAAGTCTAGACACTCATGC 59.237 50.000 24.44 9.92 0.00 4.06
480 749 3.055819 GGGAAGTCTAGACACTCATGCAA 60.056 47.826 24.44 0.00 0.00 4.08
483 752 4.717233 AGTCTAGACACTCATGCAAGAG 57.283 45.455 24.44 17.08 41.44 2.85
498 767 4.439305 GCAAGAGCATGTGGAATTGTTA 57.561 40.909 0.00 0.00 41.58 2.41
503 772 3.099141 AGCATGTGGAATTGTTAAGGGG 58.901 45.455 0.00 0.00 0.00 4.79
517 790 4.105697 TGTTAAGGGGGTGAATCTCTTGTT 59.894 41.667 0.00 0.00 0.00 2.83
520 793 2.084546 GGGGGTGAATCTCTTGTTTCG 58.915 52.381 0.00 0.00 0.00 3.46
523 796 2.084546 GGTGAATCTCTTGTTTCGGGG 58.915 52.381 0.00 0.00 0.00 5.73
544 817 5.454045 GGGGTTTCCTTGCATTGTTTCTAAA 60.454 40.000 0.00 0.00 0.00 1.85
545 818 6.052360 GGGTTTCCTTGCATTGTTTCTAAAA 58.948 36.000 0.00 0.00 0.00 1.52
546 819 6.540551 GGGTTTCCTTGCATTGTTTCTAAAAA 59.459 34.615 0.00 0.00 0.00 1.94
548 821 8.620416 GGTTTCCTTGCATTGTTTCTAAAAATT 58.380 29.630 0.00 0.00 0.00 1.82
549 822 9.650371 GTTTCCTTGCATTGTTTCTAAAAATTC 57.350 29.630 0.00 0.00 0.00 2.17
550 823 8.954950 TTCCTTGCATTGTTTCTAAAAATTCA 57.045 26.923 0.00 0.00 0.00 2.57
592 867 7.198306 ACATAAACCTTGTTAGGACTTTTCG 57.802 36.000 0.00 0.00 45.05 3.46
631 906 5.987347 CCGTGGATTAGTTAATACGGTTGAT 59.013 40.000 14.01 0.00 40.38 2.57
657 932 3.924686 CGTGATTAAGGAGCAGTTAACGT 59.075 43.478 0.00 0.00 0.00 3.99
761 1040 1.424403 TCTTGCCACATTACACGTCG 58.576 50.000 0.00 0.00 0.00 5.12
780 1059 2.492881 TCGCCCTGTACTTTCGATGTAA 59.507 45.455 0.00 0.00 0.00 2.41
782 1061 4.338964 TCGCCCTGTACTTTCGATGTAATA 59.661 41.667 0.00 0.00 0.00 0.98
983 1269 6.684362 GCAAAAACCTTAGGCTCTTTAACCAA 60.684 38.462 0.00 0.00 0.00 3.67
1053 3578 3.207669 GCCATTCTCCAGCTGGCG 61.208 66.667 28.91 22.98 45.35 5.69
1365 3908 2.267961 CTCACCGGGTACAAGCCC 59.732 66.667 6.32 0.00 45.21 5.19
1500 4043 0.888736 CCGTGAACCACATCTGGCAA 60.889 55.000 0.00 0.00 42.08 4.52
1780 4323 3.340953 CTGGCATTGGCGGGTTTCG 62.341 63.158 11.10 0.00 42.47 3.46
1807 4350 4.032558 CGATTGTGTGATGTGAGTGAGATG 59.967 45.833 0.00 0.00 0.00 2.90
1818 4361 4.468868 TGTGAGTGAGATGAATCTGTCCAT 59.531 41.667 0.00 0.00 37.25 3.41
1821 4364 4.035814 AGTGAGATGAATCTGTCCATGGA 58.964 43.478 11.44 11.44 37.25 3.41
1865 4418 8.701895 AGTTTTATTATCTCTTGGACACGGATA 58.298 33.333 0.00 0.00 0.00 2.59
1866 4419 8.762426 GTTTTATTATCTCTTGGACACGGATAC 58.238 37.037 0.00 0.00 0.00 2.24
1870 4423 7.776618 TTATCTCTTGGACACGGATACATAT 57.223 36.000 0.00 0.00 0.00 1.78
1881 4434 6.785191 ACACGGATACATATTTTTGCTCTTG 58.215 36.000 0.00 0.00 0.00 3.02
1921 4477 7.657336 TGTCTGGGTTGAAATAAAAAGTGATC 58.343 34.615 0.00 0.00 0.00 2.92
1930 4486 6.867816 TGAAATAAAAAGTGATCGCTGCATTT 59.132 30.769 10.09 13.41 0.00 2.32
1935 4491 3.921119 AGTGATCGCTGCATTTTCAAA 57.079 38.095 8.28 0.00 0.00 2.69
1936 4492 3.829948 AGTGATCGCTGCATTTTCAAAG 58.170 40.909 8.28 0.00 0.00 2.77
1937 4493 3.503363 AGTGATCGCTGCATTTTCAAAGA 59.497 39.130 8.28 0.00 0.00 2.52
1964 4520 6.912591 GGTGTTTTGATTTGTTGAGAGTACTG 59.087 38.462 0.00 0.00 0.00 2.74
1965 4521 6.912591 GTGTTTTGATTTGTTGAGAGTACTGG 59.087 38.462 0.00 0.00 0.00 4.00
1966 4522 5.689383 TTTGATTTGTTGAGAGTACTGGC 57.311 39.130 0.00 0.00 0.00 4.85
1967 4523 4.350368 TGATTTGTTGAGAGTACTGGCA 57.650 40.909 0.00 0.00 0.00 4.92
1968 4524 4.318332 TGATTTGTTGAGAGTACTGGCAG 58.682 43.478 14.16 14.16 0.00 4.85
1969 4525 3.838244 TTTGTTGAGAGTACTGGCAGT 57.162 42.857 25.34 25.34 0.00 4.40
1970 4526 2.820059 TGTTGAGAGTACTGGCAGTG 57.180 50.000 29.65 0.42 0.00 3.66
2022 4578 7.060979 GGCTTGCATTTAATTTTTAAGCAAAGC 59.939 33.333 0.00 0.00 40.42 3.51
2028 4584 9.752274 CATTTAATTTTTAAGCAAAGCGCATAA 57.248 25.926 11.47 0.00 46.13 1.90
2031 4587 7.832503 AATTTTTAAGCAAAGCGCATAATCT 57.167 28.000 11.47 0.00 46.13 2.40
2032 4588 6.630676 TTTTTAAGCAAAGCGCATAATCTG 57.369 33.333 11.47 0.00 46.13 2.90
2033 4589 5.559427 TTTAAGCAAAGCGCATAATCTGA 57.441 34.783 11.47 0.00 46.13 3.27
2034 4590 5.756195 TTAAGCAAAGCGCATAATCTGAT 57.244 34.783 11.47 0.00 46.13 2.90
2035 4591 4.644103 AAGCAAAGCGCATAATCTGATT 57.356 36.364 11.47 8.14 46.13 2.57
2036 4592 4.220533 AGCAAAGCGCATAATCTGATTC 57.779 40.909 11.47 0.00 46.13 2.52
2037 4593 3.628942 AGCAAAGCGCATAATCTGATTCA 59.371 39.130 11.47 0.00 46.13 2.57
2038 4594 4.277672 AGCAAAGCGCATAATCTGATTCAT 59.722 37.500 11.47 0.00 46.13 2.57
2039 4595 4.980434 GCAAAGCGCATAATCTGATTCATT 59.020 37.500 11.47 0.00 41.79 2.57
2040 4596 5.461078 GCAAAGCGCATAATCTGATTCATTT 59.539 36.000 11.47 0.00 41.79 2.32
2041 4597 6.019318 GCAAAGCGCATAATCTGATTCATTTT 60.019 34.615 11.47 0.00 41.79 1.82
2042 4598 7.464977 GCAAAGCGCATAATCTGATTCATTTTT 60.465 33.333 11.47 0.00 41.79 1.94
2066 4622 8.928270 TTTTTGAACACCACGTTACATTAATT 57.072 26.923 0.00 0.00 38.19 1.40
2070 4626 9.448294 TTGAACACCACGTTACATTAATTAAAC 57.552 29.630 1.21 0.00 38.19 2.01
2071 4627 8.618677 TGAACACCACGTTACATTAATTAAACA 58.381 29.630 1.21 0.00 38.19 2.83
2072 4628 9.615295 GAACACCACGTTACATTAATTAAACAT 57.385 29.630 1.21 0.00 38.19 2.71
2073 4629 9.615295 AACACCACGTTACATTAATTAAACATC 57.385 29.630 1.21 0.00 35.52 3.06
2074 4630 9.005777 ACACCACGTTACATTAATTAAACATCT 57.994 29.630 1.21 0.00 0.00 2.90
2075 4631 9.485591 CACCACGTTACATTAATTAAACATCTC 57.514 33.333 1.21 0.00 0.00 2.75
2076 4632 8.385111 ACCACGTTACATTAATTAAACATCTCG 58.615 33.333 1.21 6.32 0.00 4.04
2077 4633 8.597227 CCACGTTACATTAATTAAACATCTCGA 58.403 33.333 1.21 0.00 0.00 4.04
2078 4634 9.961266 CACGTTACATTAATTAAACATCTCGAA 57.039 29.630 1.21 0.00 0.00 3.71
2089 4645 9.755064 AATTAAACATCTCGAAACTTACAATCG 57.245 29.630 0.00 0.00 37.90 3.34
2090 4646 6.780706 AAACATCTCGAAACTTACAATCGT 57.219 33.333 0.00 0.00 37.79 3.73
2091 4647 6.780706 AACATCTCGAAACTTACAATCGTT 57.219 33.333 0.00 0.00 37.79 3.85
2092 4648 6.390987 ACATCTCGAAACTTACAATCGTTC 57.609 37.500 0.00 0.00 37.79 3.95
2093 4649 5.060569 ACATCTCGAAACTTACAATCGTTCG 59.939 40.000 0.00 0.00 37.79 3.95
2094 4650 4.786507 TCTCGAAACTTACAATCGTTCGA 58.213 39.130 6.63 6.63 37.79 3.71
2095 4651 5.396484 TCTCGAAACTTACAATCGTTCGAT 58.604 37.500 7.20 1.68 37.79 3.59
2096 4652 6.545508 TCTCGAAACTTACAATCGTTCGATA 58.454 36.000 8.11 0.00 37.79 2.92
2097 4653 6.467047 TCTCGAAACTTACAATCGTTCGATAC 59.533 38.462 8.11 0.00 37.79 2.24
2098 4654 6.085573 TCGAAACTTACAATCGTTCGATACA 58.914 36.000 8.11 0.00 37.79 2.29
2099 4655 6.249893 TCGAAACTTACAATCGTTCGATACAG 59.750 38.462 8.11 4.80 37.79 2.74
2100 4656 6.249893 CGAAACTTACAATCGTTCGATACAGA 59.750 38.462 8.11 0.00 0.00 3.41
2101 4657 7.201291 CGAAACTTACAATCGTTCGATACAGAA 60.201 37.037 8.11 1.22 0.00 3.02
2102 4658 8.475331 AAACTTACAATCGTTCGATACAGAAT 57.525 30.769 8.11 0.00 32.25 2.40
2103 4659 8.475331 AACTTACAATCGTTCGATACAGAATT 57.525 30.769 8.11 0.00 32.25 2.17
2104 4660 8.116624 ACTTACAATCGTTCGATACAGAATTC 57.883 34.615 8.11 0.00 32.25 2.17
2105 4661 7.758076 ACTTACAATCGTTCGATACAGAATTCA 59.242 33.333 8.44 0.00 32.25 2.57
2106 4662 6.332504 ACAATCGTTCGATACAGAATTCAC 57.667 37.500 8.44 0.00 32.25 3.18
2107 4663 5.291128 ACAATCGTTCGATACAGAATTCACC 59.709 40.000 8.44 0.00 32.25 4.02
2108 4664 4.443913 TCGTTCGATACAGAATTCACCA 57.556 40.909 8.44 0.00 32.25 4.17
2109 4665 4.171005 TCGTTCGATACAGAATTCACCAC 58.829 43.478 8.44 0.00 32.25 4.16
2110 4666 3.924073 CGTTCGATACAGAATTCACCACA 59.076 43.478 8.44 0.00 32.25 4.17
2111 4667 4.201589 CGTTCGATACAGAATTCACCACAC 60.202 45.833 8.44 0.00 32.25 3.82
2112 4668 4.529109 TCGATACAGAATTCACCACACA 57.471 40.909 8.44 0.00 0.00 3.72
2113 4669 4.494484 TCGATACAGAATTCACCACACAG 58.506 43.478 8.44 0.00 0.00 3.66
2114 4670 3.618594 CGATACAGAATTCACCACACAGG 59.381 47.826 8.44 0.00 45.67 4.00
2115 4671 2.276732 ACAGAATTCACCACACAGGG 57.723 50.000 8.44 0.00 43.89 4.45
2116 4672 0.883833 CAGAATTCACCACACAGGGC 59.116 55.000 8.44 0.00 43.89 5.19
2117 4673 0.606401 AGAATTCACCACACAGGGCG 60.606 55.000 8.44 0.00 43.89 6.13
2118 4674 1.586154 GAATTCACCACACAGGGCGG 61.586 60.000 0.00 0.00 43.89 6.13
2119 4675 2.351924 AATTCACCACACAGGGCGGT 62.352 55.000 0.00 0.00 43.89 5.68
2120 4676 1.485294 ATTCACCACACAGGGCGGTA 61.485 55.000 0.00 0.00 43.89 4.02
2121 4677 2.358247 CACCACACAGGGCGGTAC 60.358 66.667 0.00 0.00 43.89 3.34
2122 4678 2.845317 ACCACACAGGGCGGTACA 60.845 61.111 0.00 0.00 43.89 2.90
2123 4679 2.221299 ACCACACAGGGCGGTACAT 61.221 57.895 0.00 0.00 43.89 2.29
2124 4680 1.449601 CCACACAGGGCGGTACATC 60.450 63.158 0.00 0.00 0.00 3.06
2125 4681 1.295101 CACACAGGGCGGTACATCA 59.705 57.895 0.00 0.00 0.00 3.07
2126 4682 0.107703 CACACAGGGCGGTACATCAT 60.108 55.000 0.00 0.00 0.00 2.45
2127 4683 0.618458 ACACAGGGCGGTACATCATT 59.382 50.000 0.00 0.00 0.00 2.57
2128 4684 1.834896 ACACAGGGCGGTACATCATTA 59.165 47.619 0.00 0.00 0.00 1.90
2129 4685 2.237643 ACACAGGGCGGTACATCATTAA 59.762 45.455 0.00 0.00 0.00 1.40
2130 4686 2.612212 CACAGGGCGGTACATCATTAAC 59.388 50.000 0.00 0.00 0.00 2.01
2131 4687 2.237643 ACAGGGCGGTACATCATTAACA 59.762 45.455 0.00 0.00 0.00 2.41
2132 4688 3.275143 CAGGGCGGTACATCATTAACAA 58.725 45.455 0.00 0.00 0.00 2.83
2133 4689 3.312421 CAGGGCGGTACATCATTAACAAG 59.688 47.826 0.00 0.00 0.00 3.16
2134 4690 3.199071 AGGGCGGTACATCATTAACAAGA 59.801 43.478 0.00 0.00 0.00 3.02
2135 4691 3.942748 GGGCGGTACATCATTAACAAGAA 59.057 43.478 0.00 0.00 0.00 2.52
2136 4692 4.578928 GGGCGGTACATCATTAACAAGAAT 59.421 41.667 0.00 0.00 0.00 2.40
2137 4693 5.761234 GGGCGGTACATCATTAACAAGAATA 59.239 40.000 0.00 0.00 0.00 1.75
2138 4694 6.293244 GGGCGGTACATCATTAACAAGAATAC 60.293 42.308 0.00 0.00 0.00 1.89
2139 4695 6.293244 GGCGGTACATCATTAACAAGAATACC 60.293 42.308 0.00 0.00 0.00 2.73
2140 4696 6.259167 GCGGTACATCATTAACAAGAATACCA 59.741 38.462 0.00 0.00 32.89 3.25
2141 4697 7.041372 GCGGTACATCATTAACAAGAATACCAT 60.041 37.037 0.00 0.00 32.89 3.55
2142 4698 8.495949 CGGTACATCATTAACAAGAATACCATC 58.504 37.037 0.00 0.00 32.89 3.51
2143 4699 8.495949 GGTACATCATTAACAAGAATACCATCG 58.504 37.037 0.00 0.00 33.25 3.84
2144 4700 7.496529 ACATCATTAACAAGAATACCATCGG 57.503 36.000 0.00 0.00 0.00 4.18
2145 4701 7.279615 ACATCATTAACAAGAATACCATCGGA 58.720 34.615 0.00 0.00 0.00 4.55
2146 4702 7.939039 ACATCATTAACAAGAATACCATCGGAT 59.061 33.333 0.00 0.00 0.00 4.18
2147 4703 7.962964 TCATTAACAAGAATACCATCGGATC 57.037 36.000 0.00 0.00 0.00 3.36
2148 4704 7.735917 TCATTAACAAGAATACCATCGGATCT 58.264 34.615 0.00 0.00 0.00 2.75
2149 4705 8.866093 TCATTAACAAGAATACCATCGGATCTA 58.134 33.333 0.00 0.00 0.00 1.98
2150 4706 9.658799 CATTAACAAGAATACCATCGGATCTAT 57.341 33.333 0.00 0.00 0.00 1.98
2152 4708 7.969536 AACAAGAATACCATCGGATCTATTG 57.030 36.000 0.00 0.00 0.00 1.90
2153 4709 7.067496 ACAAGAATACCATCGGATCTATTGT 57.933 36.000 0.00 0.00 0.00 2.71
2154 4710 7.155328 ACAAGAATACCATCGGATCTATTGTC 58.845 38.462 0.00 0.00 0.00 3.18
2155 4711 6.918067 AGAATACCATCGGATCTATTGTCA 57.082 37.500 0.00 0.00 0.00 3.58
2156 4712 7.303182 AGAATACCATCGGATCTATTGTCAA 57.697 36.000 0.00 0.00 0.00 3.18
2157 4713 7.735917 AGAATACCATCGGATCTATTGTCAAA 58.264 34.615 0.00 0.00 0.00 2.69
2158 4714 8.210946 AGAATACCATCGGATCTATTGTCAAAA 58.789 33.333 0.00 0.00 0.00 2.44
2159 4715 7.730364 ATACCATCGGATCTATTGTCAAAAC 57.270 36.000 0.00 0.00 0.00 2.43
2160 4716 5.745227 ACCATCGGATCTATTGTCAAAACT 58.255 37.500 0.00 0.00 0.00 2.66
2161 4717 6.884832 ACCATCGGATCTATTGTCAAAACTA 58.115 36.000 0.00 0.00 0.00 2.24
2162 4718 7.335627 ACCATCGGATCTATTGTCAAAACTAA 58.664 34.615 0.00 0.00 0.00 2.24
2163 4719 7.827236 ACCATCGGATCTATTGTCAAAACTAAA 59.173 33.333 0.00 0.00 0.00 1.85
2164 4720 8.122952 CCATCGGATCTATTGTCAAAACTAAAC 58.877 37.037 0.00 0.00 0.00 2.01
2165 4721 8.883731 CATCGGATCTATTGTCAAAACTAAACT 58.116 33.333 0.00 0.00 0.00 2.66
2166 4722 8.842358 TCGGATCTATTGTCAAAACTAAACTT 57.158 30.769 0.00 0.00 0.00 2.66
2167 4723 9.932207 TCGGATCTATTGTCAAAACTAAACTTA 57.068 29.630 0.00 0.00 0.00 2.24
2169 4725 9.989869 GGATCTATTGTCAAAACTAAACTTAGC 57.010 33.333 0.00 0.00 34.09 3.09
2183 4739 9.681062 AACTAAACTTAGCTATTAAATGAGCCA 57.319 29.630 0.00 0.00 39.65 4.75
2184 4740 9.110502 ACTAAACTTAGCTATTAAATGAGCCAC 57.889 33.333 0.00 0.00 39.65 5.01
2185 4741 6.944234 AACTTAGCTATTAAATGAGCCACC 57.056 37.500 0.00 0.00 39.65 4.61
2186 4742 6.001449 ACTTAGCTATTAAATGAGCCACCA 57.999 37.500 0.00 0.00 39.65 4.17
2187 4743 5.823045 ACTTAGCTATTAAATGAGCCACCAC 59.177 40.000 0.00 0.00 39.65 4.16
2188 4744 4.235079 AGCTATTAAATGAGCCACCACA 57.765 40.909 0.00 0.00 39.65 4.17
2189 4745 4.796606 AGCTATTAAATGAGCCACCACAT 58.203 39.130 0.00 0.00 39.65 3.21
2190 4746 5.203528 AGCTATTAAATGAGCCACCACATT 58.796 37.500 0.00 0.00 39.65 2.71
2191 4747 5.068198 AGCTATTAAATGAGCCACCACATTG 59.932 40.000 0.00 0.00 39.65 2.82
2192 4748 4.741321 ATTAAATGAGCCACCACATTGG 57.259 40.909 0.00 0.00 45.02 3.16
2198 4754 3.061848 CCACCACATTGGCGGTCC 61.062 66.667 0.00 0.00 42.67 4.46
2199 4755 3.430862 CACCACATTGGCGGTCCG 61.431 66.667 6.99 6.99 42.67 4.79
2200 4756 3.632080 ACCACATTGGCGGTCCGA 61.632 61.111 17.49 0.00 42.67 4.55
2201 4757 3.124921 CCACATTGGCGGTCCGAC 61.125 66.667 17.49 14.47 34.27 4.79
2202 4758 2.047274 CACATTGGCGGTCCGACT 60.047 61.111 20.13 0.00 35.04 4.18
2203 4759 1.671054 CACATTGGCGGTCCGACTT 60.671 57.895 20.13 2.56 35.04 3.01
2204 4760 0.390603 CACATTGGCGGTCCGACTTA 60.391 55.000 20.13 6.84 35.04 2.24
2205 4761 0.539986 ACATTGGCGGTCCGACTTAT 59.460 50.000 20.13 9.11 35.04 1.73
2206 4762 1.217882 CATTGGCGGTCCGACTTATC 58.782 55.000 20.13 0.00 35.04 1.75
2207 4763 1.120530 ATTGGCGGTCCGACTTATCT 58.879 50.000 20.13 0.00 35.04 1.98
2208 4764 0.899720 TTGGCGGTCCGACTTATCTT 59.100 50.000 20.13 0.00 35.04 2.40
2209 4765 1.766494 TGGCGGTCCGACTTATCTTA 58.234 50.000 20.13 0.00 35.04 2.10
2210 4766 1.679680 TGGCGGTCCGACTTATCTTAG 59.320 52.381 20.13 0.00 35.04 2.18
2211 4767 1.602416 GGCGGTCCGACTTATCTTAGC 60.602 57.143 17.49 0.00 0.00 3.09
2212 4768 1.602416 GCGGTCCGACTTATCTTAGCC 60.602 57.143 17.49 0.00 0.00 3.93
2213 4769 1.679680 CGGTCCGACTTATCTTAGCCA 59.320 52.381 4.91 0.00 0.00 4.75
2214 4770 2.296471 CGGTCCGACTTATCTTAGCCAT 59.704 50.000 4.91 0.00 0.00 4.40
2215 4771 3.243771 CGGTCCGACTTATCTTAGCCATT 60.244 47.826 4.91 0.00 0.00 3.16
2216 4772 4.704965 GGTCCGACTTATCTTAGCCATTT 58.295 43.478 0.00 0.00 0.00 2.32
2217 4773 4.511826 GGTCCGACTTATCTTAGCCATTTG 59.488 45.833 0.00 0.00 0.00 2.32
2218 4774 5.357257 GTCCGACTTATCTTAGCCATTTGA 58.643 41.667 0.00 0.00 0.00 2.69
2219 4775 5.815740 GTCCGACTTATCTTAGCCATTTGAA 59.184 40.000 0.00 0.00 0.00 2.69
2220 4776 6.315393 GTCCGACTTATCTTAGCCATTTGAAA 59.685 38.462 0.00 0.00 0.00 2.69
2221 4777 6.538742 TCCGACTTATCTTAGCCATTTGAAAG 59.461 38.462 0.00 0.00 0.00 2.62
2222 4778 6.316390 CCGACTTATCTTAGCCATTTGAAAGT 59.684 38.462 0.00 0.00 0.00 2.66
2223 4779 7.148239 CCGACTTATCTTAGCCATTTGAAAGTT 60.148 37.037 0.00 0.00 0.00 2.66
2224 4780 8.879759 CGACTTATCTTAGCCATTTGAAAGTTA 58.120 33.333 0.00 0.00 0.00 2.24
2246 4802 9.905713 AGTTATTTATCAACTTGGATAAGCTCA 57.094 29.630 0.00 0.00 39.98 4.26
2250 4806 5.573337 ATCAACTTGGATAAGCTCAAAGC 57.427 39.130 0.00 0.00 38.33 3.51
2263 4819 4.574599 GCTCAAAGCTTCCTTCTTCAAA 57.425 40.909 0.00 0.00 38.45 2.69
2264 4820 5.131594 GCTCAAAGCTTCCTTCTTCAAAT 57.868 39.130 0.00 0.00 38.45 2.32
2265 4821 5.159925 GCTCAAAGCTTCCTTCTTCAAATC 58.840 41.667 0.00 0.00 38.45 2.17
2266 4822 5.278660 GCTCAAAGCTTCCTTCTTCAAATCA 60.279 40.000 0.00 0.00 38.45 2.57
2267 4823 6.713762 TCAAAGCTTCCTTCTTCAAATCAA 57.286 33.333 0.00 0.00 0.00 2.57
2268 4824 6.507023 TCAAAGCTTCCTTCTTCAAATCAAC 58.493 36.000 0.00 0.00 0.00 3.18
2269 4825 5.459536 AAGCTTCCTTCTTCAAATCAACC 57.540 39.130 0.00 0.00 0.00 3.77
2270 4826 4.473444 AGCTTCCTTCTTCAAATCAACCA 58.527 39.130 0.00 0.00 0.00 3.67
2271 4827 4.895297 AGCTTCCTTCTTCAAATCAACCAA 59.105 37.500 0.00 0.00 0.00 3.67
2272 4828 4.984785 GCTTCCTTCTTCAAATCAACCAAC 59.015 41.667 0.00 0.00 0.00 3.77
2273 4829 4.829064 TCCTTCTTCAAATCAACCAACG 57.171 40.909 0.00 0.00 0.00 4.10
2274 4830 4.204012 TCCTTCTTCAAATCAACCAACGT 58.796 39.130 0.00 0.00 0.00 3.99
2275 4831 4.642885 TCCTTCTTCAAATCAACCAACGTT 59.357 37.500 0.00 0.00 0.00 3.99
2288 4844 4.081322 ACCAACGTTGATCTAACAAGGT 57.919 40.909 29.35 11.62 46.09 3.50
2293 4849 5.470047 ACGTTGATCTAACAAGGTTCTCT 57.530 39.130 0.00 0.00 43.19 3.10
2294 4850 6.585695 ACGTTGATCTAACAAGGTTCTCTA 57.414 37.500 0.00 0.00 43.19 2.43
2295 4851 7.171630 ACGTTGATCTAACAAGGTTCTCTAT 57.828 36.000 0.00 0.00 43.19 1.98
2296 4852 7.612677 ACGTTGATCTAACAAGGTTCTCTATT 58.387 34.615 0.00 0.00 43.19 1.73
2297 4853 7.545965 ACGTTGATCTAACAAGGTTCTCTATTG 59.454 37.037 0.00 0.00 43.19 1.90
2298 4854 7.464710 CGTTGATCTAACAAGGTTCTCTATTGC 60.465 40.741 0.00 0.00 39.30 3.56
2299 4855 6.946340 TGATCTAACAAGGTTCTCTATTGCA 58.054 36.000 0.00 0.00 0.00 4.08
2300 4856 7.394016 TGATCTAACAAGGTTCTCTATTGCAA 58.606 34.615 0.00 0.00 0.00 4.08
2301 4857 7.550551 TGATCTAACAAGGTTCTCTATTGCAAG 59.449 37.037 4.94 0.00 0.00 4.01
2302 4858 6.173339 TCTAACAAGGTTCTCTATTGCAAGG 58.827 40.000 4.94 0.15 0.00 3.61
2303 4859 3.690460 ACAAGGTTCTCTATTGCAAGGG 58.310 45.455 4.94 0.00 0.00 3.95
2304 4860 3.330701 ACAAGGTTCTCTATTGCAAGGGA 59.669 43.478 4.94 4.65 0.00 4.20
2305 4861 3.636153 AGGTTCTCTATTGCAAGGGAC 57.364 47.619 4.94 0.05 0.00 4.46
2306 4862 2.093447 AGGTTCTCTATTGCAAGGGACG 60.093 50.000 4.94 0.94 0.00 4.79
2307 4863 1.666189 GTTCTCTATTGCAAGGGACGC 59.334 52.381 4.94 0.00 0.00 5.19
2308 4864 0.178068 TCTCTATTGCAAGGGACGCC 59.822 55.000 4.94 0.00 0.00 5.68
2309 4865 0.107703 CTCTATTGCAAGGGACGCCA 60.108 55.000 4.94 0.00 0.00 5.69
2310 4866 0.392461 TCTATTGCAAGGGACGCCAC 60.392 55.000 4.94 0.00 0.00 5.01
2311 4867 0.676466 CTATTGCAAGGGACGCCACA 60.676 55.000 4.94 0.00 0.00 4.17
2312 4868 0.250945 TATTGCAAGGGACGCCACAA 60.251 50.000 4.94 0.00 0.00 3.33
2313 4869 1.805428 ATTGCAAGGGACGCCACAAC 61.805 55.000 4.94 0.00 0.00 3.32
2314 4870 2.904866 GCAAGGGACGCCACAACA 60.905 61.111 0.00 0.00 0.00 3.33
2315 4871 2.485795 GCAAGGGACGCCACAACAA 61.486 57.895 0.00 0.00 0.00 2.83
2316 4872 2.010582 GCAAGGGACGCCACAACAAA 62.011 55.000 0.00 0.00 0.00 2.83
2317 4873 0.673437 CAAGGGACGCCACAACAAAT 59.327 50.000 0.00 0.00 0.00 2.32
2318 4874 1.883275 CAAGGGACGCCACAACAAATA 59.117 47.619 0.00 0.00 0.00 1.40
2319 4875 1.530323 AGGGACGCCACAACAAATAC 58.470 50.000 0.00 0.00 0.00 1.89
2320 4876 1.202830 AGGGACGCCACAACAAATACA 60.203 47.619 0.00 0.00 0.00 2.29
2321 4877 1.068816 GGGACGCCACAACAAATACAC 60.069 52.381 0.00 0.00 0.00 2.90
2322 4878 1.604755 GGACGCCACAACAAATACACA 59.395 47.619 0.00 0.00 0.00 3.72
2323 4879 2.033550 GGACGCCACAACAAATACACAA 59.966 45.455 0.00 0.00 0.00 3.33
2324 4880 3.305064 GGACGCCACAACAAATACACAAT 60.305 43.478 0.00 0.00 0.00 2.71
2325 4881 3.896122 ACGCCACAACAAATACACAATC 58.104 40.909 0.00 0.00 0.00 2.67
2326 4882 3.316588 ACGCCACAACAAATACACAATCA 59.683 39.130 0.00 0.00 0.00 2.57
2327 4883 3.913763 CGCCACAACAAATACACAATCAG 59.086 43.478 0.00 0.00 0.00 2.90
2328 4884 4.556501 CGCCACAACAAATACACAATCAGT 60.557 41.667 0.00 0.00 0.00 3.41
2329 4885 4.917415 GCCACAACAAATACACAATCAGTC 59.083 41.667 0.00 0.00 0.00 3.51
2330 4886 5.278463 GCCACAACAAATACACAATCAGTCT 60.278 40.000 0.00 0.00 0.00 3.24
2331 4887 6.373779 CCACAACAAATACACAATCAGTCTC 58.626 40.000 0.00 0.00 0.00 3.36
2332 4888 6.205464 CCACAACAAATACACAATCAGTCTCT 59.795 38.462 0.00 0.00 0.00 3.10
2333 4889 7.387673 CCACAACAAATACACAATCAGTCTCTA 59.612 37.037 0.00 0.00 0.00 2.43
2334 4890 8.773645 CACAACAAATACACAATCAGTCTCTAA 58.226 33.333 0.00 0.00 0.00 2.10
2335 4891 9.337396 ACAACAAATACACAATCAGTCTCTAAA 57.663 29.630 0.00 0.00 0.00 1.85
2378 4934 6.852420 GGATACCTACATATAGACCAGCAA 57.148 41.667 0.00 0.00 0.00 3.91
2574 5157 4.901868 TCGAGGTAGTTAGCAAATTGGTT 58.098 39.130 2.10 0.00 0.00 3.67
2595 6649 8.726870 TGGTTGGTTTTCTAATATGCTAGTAC 57.273 34.615 0.00 0.00 0.00 2.73
2596 6650 8.545472 TGGTTGGTTTTCTAATATGCTAGTACT 58.455 33.333 0.00 0.00 0.00 2.73
2597 6651 9.043079 GGTTGGTTTTCTAATATGCTAGTACTC 57.957 37.037 0.00 0.00 0.00 2.59
2598 6652 9.819267 GTTGGTTTTCTAATATGCTAGTACTCT 57.181 33.333 0.00 0.00 0.00 3.24
2600 6654 9.422681 TGGTTTTCTAATATGCTAGTACTCTCT 57.577 33.333 0.00 0.00 0.00 3.10
2601 6655 9.902196 GGTTTTCTAATATGCTAGTACTCTCTC 57.098 37.037 0.00 0.00 0.00 3.20
2602 6656 9.902196 GTTTTCTAATATGCTAGTACTCTCTCC 57.098 37.037 0.00 0.00 0.00 3.71
2603 6657 7.908827 TTCTAATATGCTAGTACTCTCTCCG 57.091 40.000 0.00 0.00 0.00 4.63
2604 6658 7.006865 TCTAATATGCTAGTACTCTCTCCGT 57.993 40.000 0.00 0.00 0.00 4.69
2605 6659 7.098477 TCTAATATGCTAGTACTCTCTCCGTC 58.902 42.308 0.00 0.00 0.00 4.79
2606 6660 2.328819 TGCTAGTACTCTCTCCGTCC 57.671 55.000 0.00 0.00 0.00 4.79
2607 6661 1.134159 TGCTAGTACTCTCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
2608 6662 1.134159 GCTAGTACTCTCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
2609 6663 2.683152 GCTAGTACTCTCTCCGTCCCAA 60.683 54.545 0.00 0.00 0.00 4.12
2610 6664 2.830651 AGTACTCTCTCCGTCCCAAT 57.169 50.000 0.00 0.00 0.00 3.16
2611 6665 3.103080 AGTACTCTCTCCGTCCCAATT 57.897 47.619 0.00 0.00 0.00 2.32
2612 6666 3.442076 AGTACTCTCTCCGTCCCAATTT 58.558 45.455 0.00 0.00 0.00 1.82
2613 6667 3.838903 AGTACTCTCTCCGTCCCAATTTT 59.161 43.478 0.00 0.00 0.00 1.82
2614 6668 3.790089 ACTCTCTCCGTCCCAATTTTT 57.210 42.857 0.00 0.00 0.00 1.94
2650 6704 8.565896 TTTGTCTAAATACAGATGCATCAAGT 57.434 30.769 27.81 24.97 0.00 3.16
2651 6705 7.776933 TGTCTAAATACAGATGCATCAAGTC 57.223 36.000 27.81 12.13 0.00 3.01
2652 6706 7.330262 TGTCTAAATACAGATGCATCAAGTCA 58.670 34.615 27.81 14.21 0.00 3.41
2653 6707 7.989170 TGTCTAAATACAGATGCATCAAGTCAT 59.011 33.333 27.81 14.45 0.00 3.06
2654 6708 8.281194 GTCTAAATACAGATGCATCAAGTCATG 58.719 37.037 27.81 17.86 0.00 3.07
2655 6709 7.989170 TCTAAATACAGATGCATCAAGTCATGT 59.011 33.333 27.81 22.13 0.00 3.21
2656 6710 7.400599 AAATACAGATGCATCAAGTCATGTT 57.599 32.000 27.81 14.62 0.00 2.71
2657 6711 7.400599 AATACAGATGCATCAAGTCATGTTT 57.599 32.000 27.81 14.00 0.00 2.83
2658 6712 8.510243 AATACAGATGCATCAAGTCATGTTTA 57.490 30.769 27.81 9.04 0.00 2.01
2659 6713 8.687292 ATACAGATGCATCAAGTCATGTTTAT 57.313 30.769 27.81 10.76 0.00 1.40
2660 6714 7.024340 ACAGATGCATCAAGTCATGTTTATC 57.976 36.000 27.81 0.00 0.00 1.75
2661 6715 6.827251 ACAGATGCATCAAGTCATGTTTATCT 59.173 34.615 27.81 0.00 0.00 1.98
2662 6716 7.989170 ACAGATGCATCAAGTCATGTTTATCTA 59.011 33.333 27.81 0.00 0.00 1.98
2663 6717 9.000486 CAGATGCATCAAGTCATGTTTATCTAT 58.000 33.333 27.81 0.00 0.00 1.98
2666 6720 8.298030 TGCATCAAGTCATGTTTATCTATACG 57.702 34.615 0.00 0.00 0.00 3.06
2667 6721 8.141268 TGCATCAAGTCATGTTTATCTATACGA 58.859 33.333 0.00 0.00 0.00 3.43
2668 6722 8.978539 GCATCAAGTCATGTTTATCTATACGAA 58.021 33.333 0.00 0.00 0.00 3.85
2699 6753 3.790089 AAAATTTGAGACGGAGGGAGT 57.210 42.857 0.00 0.00 0.00 3.85
2700 6754 4.903045 AAAATTTGAGACGGAGGGAGTA 57.097 40.909 0.00 0.00 0.00 2.59
2752 6806 6.913132 GGCAAAGAGAGTTAAGTTTTTCTGTC 59.087 38.462 0.00 0.00 0.00 3.51
2762 6816 5.382664 AAGTTTTTCTGTCCTAGGGTGAA 57.617 39.130 9.46 8.28 0.00 3.18
2769 6823 1.281867 TGTCCTAGGGTGAATTGCAGG 59.718 52.381 9.46 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 365 6.843069 AATGAAAAACGCTTTGCAATAACT 57.157 29.167 0.00 0.00 33.60 2.24
187 454 6.485313 ACATAATCAAAACGTCACTTCAAGGA 59.515 34.615 0.00 0.00 0.00 3.36
247 515 4.839668 TGATCACCACCCTTTTTAAACG 57.160 40.909 0.00 0.00 0.00 3.60
290 558 5.041951 TCTTTGTGATCCAACAAATACGC 57.958 39.130 10.73 0.00 46.12 4.42
338 606 6.256321 GGATACAAAATGTTGTCATGCCAATC 59.744 38.462 4.02 0.91 45.00 2.67
341 609 4.081752 GGGATACAAAATGTTGTCATGCCA 60.082 41.667 4.02 0.00 45.00 4.92
412 681 5.115472 GCACGTCACAAACAATTATCAAGTG 59.885 40.000 0.00 0.00 0.00 3.16
414 683 4.318071 CGCACGTCACAAACAATTATCAAG 59.682 41.667 0.00 0.00 0.00 3.02
415 684 4.215201 CGCACGTCACAAACAATTATCAA 58.785 39.130 0.00 0.00 0.00 2.57
447 716 9.765295 AGTGTCTAGACTTCCCTACTTAAAATA 57.235 33.333 23.01 0.00 0.00 1.40
448 717 8.667592 AGTGTCTAGACTTCCCTACTTAAAAT 57.332 34.615 23.01 0.00 0.00 1.82
450 719 7.236529 TGAGTGTCTAGACTTCCCTACTTAAA 58.763 38.462 23.01 5.39 0.00 1.52
451 720 6.787170 TGAGTGTCTAGACTTCCCTACTTAA 58.213 40.000 23.01 7.49 0.00 1.85
452 721 6.384342 TGAGTGTCTAGACTTCCCTACTTA 57.616 41.667 23.01 11.01 0.00 2.24
453 722 5.258216 TGAGTGTCTAGACTTCCCTACTT 57.742 43.478 23.01 3.16 0.00 2.24
454 723 4.931027 TGAGTGTCTAGACTTCCCTACT 57.069 45.455 23.01 16.24 0.00 2.57
455 724 4.202070 GCATGAGTGTCTAGACTTCCCTAC 60.202 50.000 23.01 11.88 0.00 3.18
456 725 3.954904 GCATGAGTGTCTAGACTTCCCTA 59.045 47.826 23.01 6.67 0.00 3.53
457 726 2.763448 GCATGAGTGTCTAGACTTCCCT 59.237 50.000 23.01 13.17 0.00 4.20
458 727 2.497675 TGCATGAGTGTCTAGACTTCCC 59.502 50.000 23.01 10.45 0.00 3.97
459 728 3.876274 TGCATGAGTGTCTAGACTTCC 57.124 47.619 23.01 11.25 0.00 3.46
460 729 5.065704 TCTTGCATGAGTGTCTAGACTTC 57.934 43.478 23.01 19.20 0.00 3.01
461 730 4.620332 GCTCTTGCATGAGTGTCTAGACTT 60.620 45.833 25.45 11.78 39.41 3.01
462 731 3.119173 GCTCTTGCATGAGTGTCTAGACT 60.119 47.826 25.45 4.29 39.41 3.24
463 732 3.186119 GCTCTTGCATGAGTGTCTAGAC 58.814 50.000 25.45 16.32 39.41 2.59
464 733 2.827921 TGCTCTTGCATGAGTGTCTAGA 59.172 45.455 25.45 5.28 45.31 2.43
465 734 3.242549 TGCTCTTGCATGAGTGTCTAG 57.757 47.619 25.45 5.21 45.31 2.43
478 747 5.404946 CCTTAACAATTCCACATGCTCTTG 58.595 41.667 0.00 0.00 0.00 3.02
480 749 4.019174 CCCTTAACAATTCCACATGCTCT 58.981 43.478 0.00 0.00 0.00 4.09
483 752 2.168313 CCCCCTTAACAATTCCACATGC 59.832 50.000 0.00 0.00 0.00 4.06
490 759 5.510430 AGAGATTCACCCCCTTAACAATTC 58.490 41.667 0.00 0.00 0.00 2.17
494 763 3.655777 ACAAGAGATTCACCCCCTTAACA 59.344 43.478 0.00 0.00 0.00 2.41
495 764 4.302559 ACAAGAGATTCACCCCCTTAAC 57.697 45.455 0.00 0.00 0.00 2.01
498 767 3.767711 GAAACAAGAGATTCACCCCCTT 58.232 45.455 0.00 0.00 0.00 3.95
503 772 2.084546 CCCCGAAACAAGAGATTCACC 58.915 52.381 0.00 0.00 0.00 4.02
517 790 0.965439 CAATGCAAGGAAACCCCGAA 59.035 50.000 0.00 0.00 40.87 4.30
520 793 2.368548 AGAAACAATGCAAGGAAACCCC 59.631 45.455 0.00 0.00 0.00 4.95
523 796 9.650371 GAATTTTTAGAAACAATGCAAGGAAAC 57.350 29.630 0.00 0.00 0.00 2.78
544 817 7.986320 TGTTGGAGTCACATTTCATTTGAATTT 59.014 29.630 0.00 0.00 33.54 1.82
545 818 7.499292 TGTTGGAGTCACATTTCATTTGAATT 58.501 30.769 0.00 0.00 33.54 2.17
546 819 7.053316 TGTTGGAGTCACATTTCATTTGAAT 57.947 32.000 0.00 0.00 33.54 2.57
548 821 6.653526 ATGTTGGAGTCACATTTCATTTGA 57.346 33.333 0.00 0.00 0.00 2.69
549 822 8.702438 GTTTATGTTGGAGTCACATTTCATTTG 58.298 33.333 1.78 0.00 0.00 2.32
550 823 7.872483 GGTTTATGTTGGAGTCACATTTCATTT 59.128 33.333 1.78 0.00 0.00 2.32
608 883 7.473027 AATCAACCGTATTAACTAATCCACG 57.527 36.000 0.00 0.00 31.15 4.94
631 906 2.778299 ACTGCTCCTTAATCACGCAAA 58.222 42.857 0.00 0.00 0.00 3.68
657 932 0.320334 ATGCGTCACATCGACCACAA 60.320 50.000 0.00 0.00 42.07 3.33
696 971 0.246635 TGAGGCACGAAGCTAGGAAC 59.753 55.000 0.00 0.00 44.79 3.62
761 1040 4.748600 GGTATTACATCGAAAGTACAGGGC 59.251 45.833 0.00 0.00 0.00 5.19
983 1269 0.593518 CATCTTCTGCGCGATCGAGT 60.594 55.000 21.57 0.00 38.10 4.18
1542 4085 2.982130 AGGTTCTCCTGCGCGAAT 59.018 55.556 12.10 0.00 43.33 3.34
1780 4323 1.129251 CTCACATCACACAATCGCCAC 59.871 52.381 0.00 0.00 0.00 5.01
1807 4350 4.321601 CGATCCTACTCCATGGACAGATTC 60.322 50.000 11.44 9.71 34.90 2.52
1818 4361 1.072489 AGCTCGATCGATCCTACTCCA 59.928 52.381 19.78 0.00 0.00 3.86
1821 4364 3.688694 ACTAGCTCGATCGATCCTACT 57.311 47.619 19.78 15.14 0.00 2.57
1897 4450 6.801862 CGATCACTTTTTATTTCAACCCAGAC 59.198 38.462 0.00 0.00 0.00 3.51
1916 4472 3.825308 TCTTTGAAAATGCAGCGATCAC 58.175 40.909 0.00 0.00 0.00 3.06
1921 4477 1.270550 ACCCTCTTTGAAAATGCAGCG 59.729 47.619 0.00 0.00 0.00 5.18
1930 4486 6.293004 ACAAATCAAAACACCCTCTTTGAA 57.707 33.333 1.74 0.00 42.96 2.69
1935 4491 5.200483 TCTCAACAAATCAAAACACCCTCT 58.800 37.500 0.00 0.00 0.00 3.69
1936 4492 5.067805 ACTCTCAACAAATCAAAACACCCTC 59.932 40.000 0.00 0.00 0.00 4.30
1937 4493 4.956075 ACTCTCAACAAATCAAAACACCCT 59.044 37.500 0.00 0.00 0.00 4.34
1965 4521 2.672996 AACACATCCGGCCACTGC 60.673 61.111 2.24 0.00 0.00 4.40
1966 4522 2.334946 CCAACACATCCGGCCACTG 61.335 63.158 2.24 0.00 0.00 3.66
1967 4523 2.034066 CCAACACATCCGGCCACT 59.966 61.111 2.24 0.00 0.00 4.00
1968 4524 3.061848 CCCAACACATCCGGCCAC 61.062 66.667 2.24 0.00 0.00 5.01
1969 4525 3.561120 GACCCAACACATCCGGCCA 62.561 63.158 2.24 0.00 0.00 5.36
1970 4526 2.750237 GACCCAACACATCCGGCC 60.750 66.667 0.00 0.00 0.00 6.13
2041 4597 8.928270 AATTAATGTAACGTGGTGTTCAAAAA 57.072 26.923 0.00 0.00 42.09 1.94
2044 4600 9.448294 GTTTAATTAATGTAACGTGGTGTTCAA 57.552 29.630 0.00 0.00 42.09 2.69
2045 4601 8.618677 TGTTTAATTAATGTAACGTGGTGTTCA 58.381 29.630 0.00 0.00 42.09 3.18
2046 4602 9.615295 ATGTTTAATTAATGTAACGTGGTGTTC 57.385 29.630 0.00 0.00 42.09 3.18
2047 4603 9.615295 GATGTTTAATTAATGTAACGTGGTGTT 57.385 29.630 10.68 0.00 44.78 3.32
2048 4604 9.005777 AGATGTTTAATTAATGTAACGTGGTGT 57.994 29.630 10.68 0.00 0.00 4.16
2049 4605 9.485591 GAGATGTTTAATTAATGTAACGTGGTG 57.514 33.333 10.68 0.00 0.00 4.17
2050 4606 8.385111 CGAGATGTTTAATTAATGTAACGTGGT 58.615 33.333 10.68 1.70 0.00 4.16
2051 4607 8.597227 TCGAGATGTTTAATTAATGTAACGTGG 58.403 33.333 10.68 3.55 0.00 4.94
2052 4608 9.961266 TTCGAGATGTTTAATTAATGTAACGTG 57.039 29.630 10.68 1.18 0.00 4.49
2063 4619 9.755064 CGATTGTAAGTTTCGAGATGTTTAATT 57.245 29.630 0.00 0.00 34.92 1.40
2064 4620 8.932791 ACGATTGTAAGTTTCGAGATGTTTAAT 58.067 29.630 1.87 0.00 36.73 1.40
2065 4621 8.301730 ACGATTGTAAGTTTCGAGATGTTTAA 57.698 30.769 1.87 0.00 36.73 1.52
2066 4622 7.878477 ACGATTGTAAGTTTCGAGATGTTTA 57.122 32.000 1.87 0.00 36.73 2.01
2067 4623 6.780706 ACGATTGTAAGTTTCGAGATGTTT 57.219 33.333 1.87 0.00 36.73 2.83
2068 4624 6.399669 CGAACGATTGTAAGTTTCGAGATGTT 60.400 38.462 1.87 0.00 36.73 2.71
2069 4625 5.060569 CGAACGATTGTAAGTTTCGAGATGT 59.939 40.000 1.87 0.00 36.73 3.06
2070 4626 5.285370 TCGAACGATTGTAAGTTTCGAGATG 59.715 40.000 3.25 0.00 36.73 2.90
2071 4627 5.396484 TCGAACGATTGTAAGTTTCGAGAT 58.604 37.500 3.25 0.00 36.73 2.75
2072 4628 4.786507 TCGAACGATTGTAAGTTTCGAGA 58.213 39.130 3.25 0.00 36.73 4.04
2073 4629 5.682049 ATCGAACGATTGTAAGTTTCGAG 57.318 39.130 11.39 0.00 35.35 4.04
2074 4630 6.085573 TGTATCGAACGATTGTAAGTTTCGA 58.914 36.000 14.61 8.80 36.73 3.71
2075 4631 6.249893 TCTGTATCGAACGATTGTAAGTTTCG 59.750 38.462 14.61 0.00 38.76 3.46
2076 4632 7.502177 TCTGTATCGAACGATTGTAAGTTTC 57.498 36.000 14.61 0.00 36.17 2.78
2077 4633 7.878477 TTCTGTATCGAACGATTGTAAGTTT 57.122 32.000 14.61 0.00 36.17 2.66
2078 4634 8.475331 AATTCTGTATCGAACGATTGTAAGTT 57.525 30.769 14.61 2.84 36.17 2.66
2079 4635 7.758076 TGAATTCTGTATCGAACGATTGTAAGT 59.242 33.333 14.61 4.93 36.17 2.24
2080 4636 8.050750 GTGAATTCTGTATCGAACGATTGTAAG 58.949 37.037 14.61 7.98 36.17 2.34
2081 4637 7.009815 GGTGAATTCTGTATCGAACGATTGTAA 59.990 37.037 14.61 5.91 36.17 2.41
2082 4638 6.474427 GGTGAATTCTGTATCGAACGATTGTA 59.526 38.462 14.61 2.21 36.17 2.41
2083 4639 5.291128 GGTGAATTCTGTATCGAACGATTGT 59.709 40.000 14.61 0.00 36.17 2.71
2084 4640 5.290885 TGGTGAATTCTGTATCGAACGATTG 59.709 40.000 14.61 6.61 36.17 2.67
2085 4641 5.291128 GTGGTGAATTCTGTATCGAACGATT 59.709 40.000 14.61 0.00 36.17 3.34
2086 4642 4.804139 GTGGTGAATTCTGTATCGAACGAT 59.196 41.667 13.92 13.92 38.54 3.73
2087 4643 4.171005 GTGGTGAATTCTGTATCGAACGA 58.829 43.478 7.05 0.00 0.00 3.85
2088 4644 3.924073 TGTGGTGAATTCTGTATCGAACG 59.076 43.478 7.05 0.00 0.00 3.95
2089 4645 4.688879 TGTGTGGTGAATTCTGTATCGAAC 59.311 41.667 7.05 0.00 0.00 3.95
2090 4646 4.888917 TGTGTGGTGAATTCTGTATCGAA 58.111 39.130 7.05 0.00 0.00 3.71
2091 4647 4.494484 CTGTGTGGTGAATTCTGTATCGA 58.506 43.478 7.05 0.00 0.00 3.59
2092 4648 3.618594 CCTGTGTGGTGAATTCTGTATCG 59.381 47.826 7.05 0.00 0.00 2.92
2093 4649 3.941483 CCCTGTGTGGTGAATTCTGTATC 59.059 47.826 7.05 0.00 0.00 2.24
2094 4650 3.873801 GCCCTGTGTGGTGAATTCTGTAT 60.874 47.826 7.05 0.00 0.00 2.29
2095 4651 2.552155 GCCCTGTGTGGTGAATTCTGTA 60.552 50.000 7.05 0.00 0.00 2.74
2096 4652 1.819305 GCCCTGTGTGGTGAATTCTGT 60.819 52.381 7.05 0.00 0.00 3.41
2097 4653 0.883833 GCCCTGTGTGGTGAATTCTG 59.116 55.000 7.05 0.00 0.00 3.02
2098 4654 0.606401 CGCCCTGTGTGGTGAATTCT 60.606 55.000 7.05 0.00 38.18 2.40
2099 4655 1.586154 CCGCCCTGTGTGGTGAATTC 61.586 60.000 0.00 0.00 39.95 2.17
2100 4656 1.603455 CCGCCCTGTGTGGTGAATT 60.603 57.895 0.00 0.00 39.95 2.17
2101 4657 2.034066 CCGCCCTGTGTGGTGAAT 59.966 61.111 0.00 0.00 39.95 2.57
2107 4663 0.107703 ATGATGTACCGCCCTGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
2108 4664 0.618458 AATGATGTACCGCCCTGTGT 59.382 50.000 0.00 0.00 0.00 3.72
2109 4665 2.612212 GTTAATGATGTACCGCCCTGTG 59.388 50.000 0.00 0.00 0.00 3.66
2110 4666 2.237643 TGTTAATGATGTACCGCCCTGT 59.762 45.455 0.00 0.00 0.00 4.00
2111 4667 2.912771 TGTTAATGATGTACCGCCCTG 58.087 47.619 0.00 0.00 0.00 4.45
2112 4668 3.199071 TCTTGTTAATGATGTACCGCCCT 59.801 43.478 0.00 0.00 0.00 5.19
2113 4669 3.537580 TCTTGTTAATGATGTACCGCCC 58.462 45.455 0.00 0.00 0.00 6.13
2114 4670 5.751243 ATTCTTGTTAATGATGTACCGCC 57.249 39.130 0.00 0.00 0.00 6.13
2115 4671 6.259167 TGGTATTCTTGTTAATGATGTACCGC 59.741 38.462 0.00 0.00 33.50 5.68
2116 4672 7.780008 TGGTATTCTTGTTAATGATGTACCG 57.220 36.000 0.00 0.00 33.50 4.02
2117 4673 8.495949 CGATGGTATTCTTGTTAATGATGTACC 58.504 37.037 0.00 0.00 0.00 3.34
2118 4674 8.495949 CCGATGGTATTCTTGTTAATGATGTAC 58.504 37.037 0.00 0.00 0.00 2.90
2119 4675 8.425703 TCCGATGGTATTCTTGTTAATGATGTA 58.574 33.333 0.00 0.00 0.00 2.29
2120 4676 7.279615 TCCGATGGTATTCTTGTTAATGATGT 58.720 34.615 0.00 0.00 0.00 3.06
2121 4677 7.728847 TCCGATGGTATTCTTGTTAATGATG 57.271 36.000 0.00 0.00 0.00 3.07
2122 4678 8.378565 AGATCCGATGGTATTCTTGTTAATGAT 58.621 33.333 0.00 0.00 0.00 2.45
2123 4679 7.735917 AGATCCGATGGTATTCTTGTTAATGA 58.264 34.615 0.00 0.00 0.00 2.57
2124 4680 7.969536 AGATCCGATGGTATTCTTGTTAATG 57.030 36.000 0.00 0.00 0.00 1.90
2126 4682 9.489084 CAATAGATCCGATGGTATTCTTGTTAA 57.511 33.333 0.00 0.00 0.00 2.01
2127 4683 8.647796 ACAATAGATCCGATGGTATTCTTGTTA 58.352 33.333 0.00 0.00 0.00 2.41
2128 4684 7.509546 ACAATAGATCCGATGGTATTCTTGTT 58.490 34.615 0.00 0.00 0.00 2.83
2129 4685 7.067496 ACAATAGATCCGATGGTATTCTTGT 57.933 36.000 0.00 0.00 0.00 3.16
2130 4686 7.154656 TGACAATAGATCCGATGGTATTCTTG 58.845 38.462 0.00 0.00 0.00 3.02
2131 4687 7.303182 TGACAATAGATCCGATGGTATTCTT 57.697 36.000 0.00 0.00 0.00 2.52
2132 4688 6.918067 TGACAATAGATCCGATGGTATTCT 57.082 37.500 0.00 0.00 0.00 2.40
2133 4689 7.962964 TTTGACAATAGATCCGATGGTATTC 57.037 36.000 0.00 0.00 0.00 1.75
2134 4690 7.993183 AGTTTTGACAATAGATCCGATGGTATT 59.007 33.333 0.00 0.00 0.00 1.89
2135 4691 7.509546 AGTTTTGACAATAGATCCGATGGTAT 58.490 34.615 0.00 0.00 0.00 2.73
2136 4692 6.884832 AGTTTTGACAATAGATCCGATGGTA 58.115 36.000 0.00 0.00 0.00 3.25
2137 4693 5.745227 AGTTTTGACAATAGATCCGATGGT 58.255 37.500 0.00 0.00 0.00 3.55
2138 4694 7.786178 TTAGTTTTGACAATAGATCCGATGG 57.214 36.000 0.00 0.00 0.00 3.51
2139 4695 8.883731 AGTTTAGTTTTGACAATAGATCCGATG 58.116 33.333 0.00 0.00 0.00 3.84
2140 4696 9.449719 AAGTTTAGTTTTGACAATAGATCCGAT 57.550 29.630 0.00 0.00 0.00 4.18
2141 4697 8.842358 AAGTTTAGTTTTGACAATAGATCCGA 57.158 30.769 0.00 0.00 0.00 4.55
2143 4699 9.989869 GCTAAGTTTAGTTTTGACAATAGATCC 57.010 33.333 1.28 0.00 33.32 3.36
2157 4713 9.681062 TGGCTCATTTAATAGCTAAGTTTAGTT 57.319 29.630 0.00 0.00 38.80 2.24
2158 4714 9.110502 GTGGCTCATTTAATAGCTAAGTTTAGT 57.889 33.333 0.00 0.00 38.80 2.24
2159 4715 8.560374 GGTGGCTCATTTAATAGCTAAGTTTAG 58.440 37.037 0.00 0.00 38.80 1.85
2160 4716 8.050325 TGGTGGCTCATTTAATAGCTAAGTTTA 58.950 33.333 0.00 0.00 38.80 2.01
2161 4717 6.889722 TGGTGGCTCATTTAATAGCTAAGTTT 59.110 34.615 0.00 0.00 38.80 2.66
2162 4718 6.318900 GTGGTGGCTCATTTAATAGCTAAGTT 59.681 38.462 0.00 0.00 38.80 2.66
2163 4719 5.823045 GTGGTGGCTCATTTAATAGCTAAGT 59.177 40.000 0.00 0.00 38.80 2.24
2164 4720 5.822519 TGTGGTGGCTCATTTAATAGCTAAG 59.177 40.000 0.00 0.00 38.80 2.18
2165 4721 5.750524 TGTGGTGGCTCATTTAATAGCTAA 58.249 37.500 0.00 0.00 38.80 3.09
2166 4722 5.366482 TGTGGTGGCTCATTTAATAGCTA 57.634 39.130 0.00 0.00 38.80 3.32
2167 4723 4.235079 TGTGGTGGCTCATTTAATAGCT 57.765 40.909 0.00 0.00 38.80 3.32
2168 4724 5.284079 CAATGTGGTGGCTCATTTAATAGC 58.716 41.667 0.00 0.00 38.03 2.97
2169 4725 5.835257 CCAATGTGGTGGCTCATTTAATAG 58.165 41.667 0.00 0.00 32.85 1.73
2170 4726 5.850557 CCAATGTGGTGGCTCATTTAATA 57.149 39.130 0.00 0.00 32.85 0.98
2171 4727 4.741321 CCAATGTGGTGGCTCATTTAAT 57.259 40.909 0.00 0.00 32.85 1.40
2185 4741 0.390603 TAAGTCGGACCGCCAATGTG 60.391 55.000 9.66 0.00 0.00 3.21
2186 4742 0.539986 ATAAGTCGGACCGCCAATGT 59.460 50.000 9.66 0.00 0.00 2.71
2187 4743 1.202533 AGATAAGTCGGACCGCCAATG 60.203 52.381 9.66 0.00 0.00 2.82
2188 4744 1.120530 AGATAAGTCGGACCGCCAAT 58.879 50.000 9.66 0.00 0.00 3.16
2189 4745 0.899720 AAGATAAGTCGGACCGCCAA 59.100 50.000 9.66 0.00 0.00 4.52
2190 4746 1.679680 CTAAGATAAGTCGGACCGCCA 59.320 52.381 9.66 0.00 0.00 5.69
2191 4747 1.602416 GCTAAGATAAGTCGGACCGCC 60.602 57.143 9.66 0.00 0.00 6.13
2192 4748 1.602416 GGCTAAGATAAGTCGGACCGC 60.602 57.143 9.66 4.47 0.00 5.68
2193 4749 1.679680 TGGCTAAGATAAGTCGGACCG 59.320 52.381 7.84 7.84 0.00 4.79
2194 4750 4.338379 AATGGCTAAGATAAGTCGGACC 57.662 45.455 4.14 0.00 0.00 4.46
2195 4751 5.357257 TCAAATGGCTAAGATAAGTCGGAC 58.643 41.667 0.00 0.00 0.00 4.79
2196 4752 5.607939 TCAAATGGCTAAGATAAGTCGGA 57.392 39.130 0.00 0.00 0.00 4.55
2197 4753 6.316390 ACTTTCAAATGGCTAAGATAAGTCGG 59.684 38.462 0.00 0.00 0.00 4.79
2198 4754 7.308782 ACTTTCAAATGGCTAAGATAAGTCG 57.691 36.000 0.00 0.00 0.00 4.18
2220 4776 9.905713 TGAGCTTATCCAAGTTGATAAATAACT 57.094 29.630 3.87 0.00 39.92 2.24
2224 4780 8.193438 GCTTTGAGCTTATCCAAGTTGATAAAT 58.807 33.333 3.87 0.00 38.45 1.40
2225 4781 7.538575 GCTTTGAGCTTATCCAAGTTGATAAA 58.461 34.615 3.87 0.00 38.45 1.40
2226 4782 7.088589 GCTTTGAGCTTATCCAAGTTGATAA 57.911 36.000 3.87 6.10 38.45 1.75
2227 4783 6.683974 GCTTTGAGCTTATCCAAGTTGATA 57.316 37.500 3.87 0.00 38.45 2.15
2228 4784 5.573337 GCTTTGAGCTTATCCAAGTTGAT 57.427 39.130 3.87 0.00 38.45 2.57
2242 4798 4.574599 TTTGAAGAAGGAAGCTTTGAGC 57.425 40.909 0.00 0.00 42.84 4.26
2243 4799 6.323203 TGATTTGAAGAAGGAAGCTTTGAG 57.677 37.500 0.00 0.00 0.00 3.02
2244 4800 6.461509 GGTTGATTTGAAGAAGGAAGCTTTGA 60.462 38.462 0.00 0.00 0.00 2.69
2245 4801 5.693555 GGTTGATTTGAAGAAGGAAGCTTTG 59.306 40.000 0.00 0.00 0.00 2.77
2246 4802 5.363580 TGGTTGATTTGAAGAAGGAAGCTTT 59.636 36.000 0.00 0.00 0.00 3.51
2247 4803 4.895297 TGGTTGATTTGAAGAAGGAAGCTT 59.105 37.500 0.00 0.00 0.00 3.74
2248 4804 4.473444 TGGTTGATTTGAAGAAGGAAGCT 58.527 39.130 0.00 0.00 0.00 3.74
2249 4805 4.853924 TGGTTGATTTGAAGAAGGAAGC 57.146 40.909 0.00 0.00 0.00 3.86
2250 4806 5.215160 CGTTGGTTGATTTGAAGAAGGAAG 58.785 41.667 0.00 0.00 0.00 3.46
2251 4807 4.642885 ACGTTGGTTGATTTGAAGAAGGAA 59.357 37.500 0.00 0.00 0.00 3.36
2252 4808 4.204012 ACGTTGGTTGATTTGAAGAAGGA 58.796 39.130 0.00 0.00 0.00 3.36
2253 4809 4.568152 ACGTTGGTTGATTTGAAGAAGG 57.432 40.909 0.00 0.00 0.00 3.46
2266 4822 4.457466 ACCTTGTTAGATCAACGTTGGTT 58.543 39.130 27.02 15.52 40.26 3.67
2267 4823 4.081322 ACCTTGTTAGATCAACGTTGGT 57.919 40.909 27.02 21.90 40.26 3.67
2268 4824 4.755123 AGAACCTTGTTAGATCAACGTTGG 59.245 41.667 27.02 10.19 40.26 3.77
2269 4825 5.696724 AGAGAACCTTGTTAGATCAACGTTG 59.303 40.000 22.35 22.35 40.26 4.10
2270 4826 5.855045 AGAGAACCTTGTTAGATCAACGTT 58.145 37.500 0.00 0.00 40.26 3.99
2271 4827 5.470047 AGAGAACCTTGTTAGATCAACGT 57.530 39.130 0.00 0.00 40.26 3.99
2272 4828 7.464710 GCAATAGAGAACCTTGTTAGATCAACG 60.465 40.741 0.00 0.00 40.26 4.10
2273 4829 7.334421 TGCAATAGAGAACCTTGTTAGATCAAC 59.666 37.037 0.00 0.00 37.67 3.18
2274 4830 7.394016 TGCAATAGAGAACCTTGTTAGATCAA 58.606 34.615 0.00 0.00 0.00 2.57
2275 4831 6.946340 TGCAATAGAGAACCTTGTTAGATCA 58.054 36.000 0.00 0.00 0.00 2.92
2276 4832 7.011857 CCTTGCAATAGAGAACCTTGTTAGATC 59.988 40.741 0.00 0.00 0.00 2.75
2277 4833 6.825721 CCTTGCAATAGAGAACCTTGTTAGAT 59.174 38.462 0.00 0.00 0.00 1.98
2278 4834 6.173339 CCTTGCAATAGAGAACCTTGTTAGA 58.827 40.000 0.00 0.00 0.00 2.10
2279 4835 5.355350 CCCTTGCAATAGAGAACCTTGTTAG 59.645 44.000 0.00 0.00 0.00 2.34
2280 4836 5.013704 TCCCTTGCAATAGAGAACCTTGTTA 59.986 40.000 0.00 0.00 0.00 2.41
2281 4837 4.082125 CCCTTGCAATAGAGAACCTTGTT 58.918 43.478 0.00 0.00 0.00 2.83
2282 4838 3.330701 TCCCTTGCAATAGAGAACCTTGT 59.669 43.478 0.00 0.00 0.00 3.16
2283 4839 3.691609 GTCCCTTGCAATAGAGAACCTTG 59.308 47.826 0.00 0.00 0.00 3.61
2284 4840 3.619979 CGTCCCTTGCAATAGAGAACCTT 60.620 47.826 0.00 0.00 0.00 3.50
2285 4841 2.093447 CGTCCCTTGCAATAGAGAACCT 60.093 50.000 0.00 0.00 0.00 3.50
2286 4842 2.280628 CGTCCCTTGCAATAGAGAACC 58.719 52.381 0.00 0.00 0.00 3.62
2287 4843 1.666189 GCGTCCCTTGCAATAGAGAAC 59.334 52.381 0.00 0.00 0.00 3.01
2288 4844 1.406887 GGCGTCCCTTGCAATAGAGAA 60.407 52.381 0.00 0.00 0.00 2.87
2289 4845 0.178068 GGCGTCCCTTGCAATAGAGA 59.822 55.000 0.00 0.00 0.00 3.10
2290 4846 0.107703 TGGCGTCCCTTGCAATAGAG 60.108 55.000 0.00 0.00 0.00 2.43
2291 4847 0.392461 GTGGCGTCCCTTGCAATAGA 60.392 55.000 0.00 0.00 0.00 1.98
2292 4848 0.676466 TGTGGCGTCCCTTGCAATAG 60.676 55.000 0.00 0.00 0.00 1.73
2293 4849 0.250945 TTGTGGCGTCCCTTGCAATA 60.251 50.000 0.00 0.00 0.00 1.90
2294 4850 1.530419 TTGTGGCGTCCCTTGCAAT 60.530 52.632 0.00 0.00 0.00 3.56
2295 4851 2.124109 TTGTGGCGTCCCTTGCAA 60.124 55.556 0.00 0.00 0.00 4.08
2296 4852 2.904866 GTTGTGGCGTCCCTTGCA 60.905 61.111 0.00 0.00 0.00 4.08
2297 4853 2.010582 TTTGTTGTGGCGTCCCTTGC 62.011 55.000 0.00 0.00 0.00 4.01
2298 4854 0.673437 ATTTGTTGTGGCGTCCCTTG 59.327 50.000 0.00 0.00 0.00 3.61
2299 4855 1.883926 GTATTTGTTGTGGCGTCCCTT 59.116 47.619 0.00 0.00 0.00 3.95
2300 4856 1.202830 TGTATTTGTTGTGGCGTCCCT 60.203 47.619 0.00 0.00 0.00 4.20
2301 4857 1.068816 GTGTATTTGTTGTGGCGTCCC 60.069 52.381 0.00 0.00 0.00 4.46
2302 4858 1.604755 TGTGTATTTGTTGTGGCGTCC 59.395 47.619 0.00 0.00 0.00 4.79
2303 4859 3.341857 TTGTGTATTTGTTGTGGCGTC 57.658 42.857 0.00 0.00 0.00 5.19
2304 4860 3.316588 TGATTGTGTATTTGTTGTGGCGT 59.683 39.130 0.00 0.00 0.00 5.68
2305 4861 3.894920 TGATTGTGTATTTGTTGTGGCG 58.105 40.909 0.00 0.00 0.00 5.69
2306 4862 4.870363 ACTGATTGTGTATTTGTTGTGGC 58.130 39.130 0.00 0.00 0.00 5.01
2307 4863 6.205464 AGAGACTGATTGTGTATTTGTTGTGG 59.795 38.462 0.00 0.00 0.00 4.17
2308 4864 7.194607 AGAGACTGATTGTGTATTTGTTGTG 57.805 36.000 0.00 0.00 0.00 3.33
2309 4865 8.902540 TTAGAGACTGATTGTGTATTTGTTGT 57.097 30.769 0.00 0.00 0.00 3.32
2335 4891 8.606830 GGTATCCCTCTTCACAATCCTATTATT 58.393 37.037 0.00 0.00 0.00 1.40
2336 4892 7.964293 AGGTATCCCTCTTCACAATCCTATTAT 59.036 37.037 0.00 0.00 35.62 1.28
2337 4893 7.313731 AGGTATCCCTCTTCACAATCCTATTA 58.686 38.462 0.00 0.00 35.62 0.98
2338 4894 6.153924 AGGTATCCCTCTTCACAATCCTATT 58.846 40.000 0.00 0.00 35.62 1.73
2339 4895 5.731924 AGGTATCCCTCTTCACAATCCTAT 58.268 41.667 0.00 0.00 35.62 2.57
2340 4896 5.157770 AGGTATCCCTCTTCACAATCCTA 57.842 43.478 0.00 0.00 35.62 2.94
2341 4897 4.014273 AGGTATCCCTCTTCACAATCCT 57.986 45.455 0.00 0.00 35.62 3.24
2342 4898 4.654262 TGTAGGTATCCCTCTTCACAATCC 59.346 45.833 0.00 0.00 41.45 3.01
2343 4899 5.871396 TGTAGGTATCCCTCTTCACAATC 57.129 43.478 0.00 0.00 41.45 2.67
2344 4900 9.261035 CTATATGTAGGTATCCCTCTTCACAAT 57.739 37.037 0.00 0.00 41.45 2.71
2345 4901 8.453681 TCTATATGTAGGTATCCCTCTTCACAA 58.546 37.037 0.00 0.00 41.45 3.33
2346 4902 7.889073 GTCTATATGTAGGTATCCCTCTTCACA 59.111 40.741 0.00 0.00 41.45 3.58
2347 4903 7.339976 GGTCTATATGTAGGTATCCCTCTTCAC 59.660 44.444 0.00 0.00 41.45 3.18
2348 4904 7.019254 TGGTCTATATGTAGGTATCCCTCTTCA 59.981 40.741 0.00 0.00 41.45 3.02
2349 4905 7.411808 TGGTCTATATGTAGGTATCCCTCTTC 58.588 42.308 0.00 0.00 41.45 2.87
2350 4906 7.358255 TGGTCTATATGTAGGTATCCCTCTT 57.642 40.000 0.00 0.00 41.45 2.85
2351 4907 6.581473 GCTGGTCTATATGTAGGTATCCCTCT 60.581 46.154 0.00 0.00 41.45 3.69
2352 4908 5.595133 GCTGGTCTATATGTAGGTATCCCTC 59.405 48.000 0.00 0.00 41.45 4.30
2353 4909 5.016352 TGCTGGTCTATATGTAGGTATCCCT 59.984 44.000 0.00 0.00 45.51 4.20
2354 4910 5.269991 TGCTGGTCTATATGTAGGTATCCC 58.730 45.833 0.00 0.00 0.00 3.85
2355 4911 6.852420 TTGCTGGTCTATATGTAGGTATCC 57.148 41.667 0.00 0.00 0.00 2.59
2356 4912 8.067751 TCATTGCTGGTCTATATGTAGGTATC 57.932 38.462 0.00 0.00 0.00 2.24
2357 4913 8.615360 ATCATTGCTGGTCTATATGTAGGTAT 57.385 34.615 0.00 0.00 0.00 2.73
2358 4914 8.435931 AATCATTGCTGGTCTATATGTAGGTA 57.564 34.615 0.00 0.00 0.00 3.08
2359 4915 6.942163 ATCATTGCTGGTCTATATGTAGGT 57.058 37.500 0.00 0.00 0.00 3.08
2360 4916 7.389232 TGAATCATTGCTGGTCTATATGTAGG 58.611 38.462 0.00 0.00 0.00 3.18
2361 4917 9.445878 AATGAATCATTGCTGGTCTATATGTAG 57.554 33.333 7.79 0.00 32.39 2.74
2362 4918 9.797642 AAATGAATCATTGCTGGTCTATATGTA 57.202 29.630 9.47 0.00 34.04 2.29
2363 4919 8.573885 CAAATGAATCATTGCTGGTCTATATGT 58.426 33.333 9.47 0.00 34.04 2.29
2364 4920 8.789762 TCAAATGAATCATTGCTGGTCTATATG 58.210 33.333 9.47 0.00 34.04 1.78
2365 4921 8.929260 TCAAATGAATCATTGCTGGTCTATAT 57.071 30.769 9.47 0.00 34.04 0.86
2366 4922 8.929260 ATCAAATGAATCATTGCTGGTCTATA 57.071 30.769 9.47 0.00 34.04 1.31
2367 4923 7.308408 CGATCAAATGAATCATTGCTGGTCTAT 60.308 37.037 9.47 0.00 34.04 1.98
2368 4924 6.017687 CGATCAAATGAATCATTGCTGGTCTA 60.018 38.462 9.47 0.00 34.04 2.59
2369 4925 5.220989 CGATCAAATGAATCATTGCTGGTCT 60.221 40.000 9.47 0.00 34.04 3.85
2370 4926 4.974275 CGATCAAATGAATCATTGCTGGTC 59.026 41.667 9.47 9.60 34.04 4.02
2371 4927 4.641541 TCGATCAAATGAATCATTGCTGGT 59.358 37.500 9.47 1.07 34.04 4.00
2372 4928 5.177725 TCGATCAAATGAATCATTGCTGG 57.822 39.130 9.47 0.68 34.04 4.85
2373 4929 5.212934 CCTCGATCAAATGAATCATTGCTG 58.787 41.667 9.47 5.35 34.04 4.41
2374 4930 4.277672 CCCTCGATCAAATGAATCATTGCT 59.722 41.667 9.47 0.00 34.04 3.91
2375 4931 4.276678 TCCCTCGATCAAATGAATCATTGC 59.723 41.667 9.47 0.00 34.04 3.56
2376 4932 5.530171 ACTCCCTCGATCAAATGAATCATTG 59.470 40.000 9.47 4.43 34.04 2.82
2377 4933 5.688807 ACTCCCTCGATCAAATGAATCATT 58.311 37.500 2.07 2.07 35.39 2.57
2378 4934 5.163269 TGACTCCCTCGATCAAATGAATCAT 60.163 40.000 0.00 0.00 0.00 2.45
2475 5032 7.568349 TCTGAATGGTGAAATAAGAGCTACAT 58.432 34.615 0.00 0.00 0.00 2.29
2574 5157 9.422681 AGAGAGTACTAGCATATTAGAAAACCA 57.577 33.333 0.00 0.00 0.00 3.67
2624 6678 9.182214 ACTTGATGCATCTGTATTTAGACAAAT 57.818 29.630 26.32 0.00 38.02 2.32
2625 6679 8.565896 ACTTGATGCATCTGTATTTAGACAAA 57.434 30.769 26.32 7.54 0.00 2.83
2626 6680 7.823799 TGACTTGATGCATCTGTATTTAGACAA 59.176 33.333 26.32 8.33 0.00 3.18
2627 6681 7.330262 TGACTTGATGCATCTGTATTTAGACA 58.670 34.615 26.32 13.83 0.00 3.41
2628 6682 7.776933 TGACTTGATGCATCTGTATTTAGAC 57.223 36.000 26.32 11.83 0.00 2.59
2629 6683 7.989170 ACATGACTTGATGCATCTGTATTTAGA 59.011 33.333 26.32 0.72 0.00 2.10
2630 6684 8.151141 ACATGACTTGATGCATCTGTATTTAG 57.849 34.615 26.32 12.86 0.00 1.85
2631 6685 8.510243 AACATGACTTGATGCATCTGTATTTA 57.490 30.769 26.32 12.53 0.00 1.40
2632 6686 7.400599 AACATGACTTGATGCATCTGTATTT 57.599 32.000 26.32 12.71 0.00 1.40
2633 6687 7.400599 AAACATGACTTGATGCATCTGTATT 57.599 32.000 26.32 14.09 0.00 1.89
2634 6688 8.687292 ATAAACATGACTTGATGCATCTGTAT 57.313 30.769 26.32 10.24 0.00 2.29
2635 6689 7.989170 AGATAAACATGACTTGATGCATCTGTA 59.011 33.333 26.32 11.56 0.00 2.74
2636 6690 6.827251 AGATAAACATGACTTGATGCATCTGT 59.173 34.615 26.32 22.94 0.00 3.41
2637 6691 7.260558 AGATAAACATGACTTGATGCATCTG 57.739 36.000 26.32 20.20 0.00 2.90
2640 6694 8.929746 CGTATAGATAAACATGACTTGATGCAT 58.070 33.333 0.00 0.00 0.00 3.96
2641 6695 8.141268 TCGTATAGATAAACATGACTTGATGCA 58.859 33.333 0.00 0.00 0.00 3.96
2642 6696 8.520835 TCGTATAGATAAACATGACTTGATGC 57.479 34.615 0.00 0.00 0.00 3.91
2678 6732 4.100279 ACTCCCTCCGTCTCAAATTTTT 57.900 40.909 0.00 0.00 0.00 1.94
2679 6733 3.790089 ACTCCCTCCGTCTCAAATTTT 57.210 42.857 0.00 0.00 0.00 1.82
2680 6734 5.437191 AATACTCCCTCCGTCTCAAATTT 57.563 39.130 0.00 0.00 0.00 1.82
2681 6735 6.555463 TTAATACTCCCTCCGTCTCAAATT 57.445 37.500 0.00 0.00 0.00 1.82
2682 6736 6.326583 TCATTAATACTCCCTCCGTCTCAAAT 59.673 38.462 0.00 0.00 0.00 2.32
2683 6737 5.659525 TCATTAATACTCCCTCCGTCTCAAA 59.340 40.000 0.00 0.00 0.00 2.69
2684 6738 5.205821 TCATTAATACTCCCTCCGTCTCAA 58.794 41.667 0.00 0.00 0.00 3.02
2685 6739 4.800023 TCATTAATACTCCCTCCGTCTCA 58.200 43.478 0.00 0.00 0.00 3.27
2686 6740 4.828387 ACTCATTAATACTCCCTCCGTCTC 59.172 45.833 0.00 0.00 0.00 3.36
2687 6741 4.805744 ACTCATTAATACTCCCTCCGTCT 58.194 43.478 0.00 0.00 0.00 4.18
2688 6742 5.532664 AACTCATTAATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
2689 6743 5.952347 AAACTCATTAATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2690 6744 5.007724 GCAAAACTCATTAATACTCCCTCCG 59.992 44.000 0.00 0.00 0.00 4.63
2691 6745 6.122964 AGCAAAACTCATTAATACTCCCTCC 58.877 40.000 0.00 0.00 0.00 4.30
2692 6746 7.769044 TGTAGCAAAACTCATTAATACTCCCTC 59.231 37.037 0.00 0.00 0.00 4.30
2693 6747 7.553044 GTGTAGCAAAACTCATTAATACTCCCT 59.447 37.037 0.00 0.00 0.00 4.20
2694 6748 7.201705 GGTGTAGCAAAACTCATTAATACTCCC 60.202 40.741 0.00 0.00 0.00 4.30
2695 6749 7.201705 GGGTGTAGCAAAACTCATTAATACTCC 60.202 40.741 0.00 0.00 0.00 3.85
2696 6750 7.335924 TGGGTGTAGCAAAACTCATTAATACTC 59.664 37.037 0.00 0.00 0.00 2.59
2697 6751 7.120726 GTGGGTGTAGCAAAACTCATTAATACT 59.879 37.037 0.00 0.00 0.00 2.12
2698 6752 7.120726 AGTGGGTGTAGCAAAACTCATTAATAC 59.879 37.037 0.00 0.00 0.00 1.89
2699 6753 7.172342 AGTGGGTGTAGCAAAACTCATTAATA 58.828 34.615 0.00 0.00 0.00 0.98
2700 6754 6.010219 AGTGGGTGTAGCAAAACTCATTAAT 58.990 36.000 0.00 0.00 0.00 1.40
2752 6806 0.625849 ACCCTGCAATTCACCCTAGG 59.374 55.000 0.06 0.06 0.00 3.02
2762 6816 3.549794 GCTTCTCTTCATACCCTGCAAT 58.450 45.455 0.00 0.00 0.00 3.56
2769 6823 5.652994 ATATCCTCGCTTCTCTTCATACC 57.347 43.478 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.