Multiple sequence alignment - TraesCS5A01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G278800 chr5A 100.000 2603 0 0 1 2603 488025386 488022784 0.000000e+00 4807.0
1 TraesCS5A01G278800 chr5A 100.000 623 0 0 2973 3595 488022414 488021792 0.000000e+00 1151.0
2 TraesCS5A01G278800 chr5A 92.045 88 7 0 469 556 479846213 479846126 1.360000e-24 124.0
3 TraesCS5A01G278800 chr5D 93.640 1934 63 19 705 2603 386152436 386150528 0.000000e+00 2835.0
4 TraesCS5A01G278800 chr5D 93.171 205 10 2 3331 3534 386147089 386146888 7.550000e-77 298.0
5 TraesCS5A01G278800 chr5D 87.333 150 16 3 3186 3332 462454653 462454802 6.170000e-38 169.0
6 TraesCS5A01G278800 chr5D 89.600 125 13 0 2988 3112 386149978 386149854 3.720000e-35 159.0
7 TraesCS5A01G278800 chr5D 95.714 70 3 0 3107 3176 386147150 386147081 2.930000e-21 113.0
8 TraesCS5A01G278800 chr5B 92.513 1870 92 24 773 2603 463994029 463992169 0.000000e+00 2634.0
9 TraesCS5A01G278800 chr5B 93.269 208 10 3 2973 3176 463991914 463991707 1.620000e-78 303.0
10 TraesCS5A01G278800 chr5B 90.367 218 15 3 562 777 463997359 463997146 7.600000e-72 281.0
11 TraesCS5A01G278800 chr5B 93.243 148 9 1 8 154 464135165 464135018 2.170000e-52 217.0
12 TraesCS5A01G278800 chr5B 85.000 220 12 3 252 471 463997567 463997369 1.690000e-48 204.0
13 TraesCS5A01G278800 chr5B 84.615 208 15 6 3331 3534 463991715 463991521 1.320000e-44 191.0
14 TraesCS5A01G278800 chr5B 100.000 45 0 0 149 193 464133327 464133283 2.300000e-12 84.2
15 TraesCS5A01G278800 chr5B 95.652 46 1 1 3550 3595 463991536 463991492 4.980000e-09 73.1
16 TraesCS5A01G278800 chr7B 89.610 154 12 4 2138 2289 202161247 202161096 3.660000e-45 193.0
17 TraesCS5A01G278800 chr7B 91.011 89 6 2 481 569 479529556 479529470 6.310000e-23 119.0
18 TraesCS5A01G278800 chr7B 89.011 91 10 0 466 556 482820034 482820124 2.930000e-21 113.0
19 TraesCS5A01G278800 chr7D 88.961 154 13 4 2138 2289 230815510 230815359 1.700000e-43 187.0
20 TraesCS5A01G278800 chr7D 86.897 145 18 1 3186 3330 585665868 585666011 1.030000e-35 161.0
21 TraesCS5A01G278800 chr7D 94.937 79 4 0 481 559 596643498 596643420 1.360000e-24 124.0
22 TraesCS5A01G278800 chr3D 87.838 148 14 3 3186 3330 535669872 535670018 1.720000e-38 171.0
23 TraesCS5A01G278800 chr3D 86.538 156 16 5 3187 3337 92914791 92914636 2.220000e-37 167.0
24 TraesCS5A01G278800 chr2B 85.294 170 19 6 3168 3334 25447086 25446920 1.720000e-38 171.0
25 TraesCS5A01G278800 chr2B 90.217 92 7 2 465 556 583156229 583156318 6.310000e-23 119.0
26 TraesCS5A01G278800 chr2B 76.433 157 26 11 1199 1348 118312366 118312214 1.380000e-09 75.0
27 TraesCS5A01G278800 chr1D 85.030 167 21 4 3164 3327 462192345 462192510 2.220000e-37 167.0
28 TraesCS5A01G278800 chr1D 86.207 145 18 2 3187 3329 330094306 330094162 4.810000e-34 156.0
29 TraesCS5A01G278800 chr6D 85.616 146 17 3 3187 3330 208769849 208769706 2.240000e-32 150.0
30 TraesCS5A01G278800 chr2A 83.851 161 18 7 3178 3332 766565065 766564907 2.890000e-31 147.0
31 TraesCS5A01G278800 chr2A 76.000 175 31 9 1181 1348 77321749 77321579 2.980000e-11 80.5
32 TraesCS5A01G278800 chr1A 95.122 82 4 0 475 556 358735111 358735192 2.910000e-26 130.0
33 TraesCS5A01G278800 chr4D 93.023 86 6 0 475 560 47533184 47533269 3.770000e-25 126.0
34 TraesCS5A01G278800 chrUn 94.937 79 4 0 481 559 31618537 31618459 1.360000e-24 124.0
35 TraesCS5A01G278800 chr4B 95.000 80 3 1 481 559 600126411 600126332 1.360000e-24 124.0
36 TraesCS5A01G278800 chr2D 76.000 175 31 11 1181 1348 76802540 76802370 2.980000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G278800 chr5A 488021792 488025386 3594 True 2979.00 4807 100.00000 1 3595 2 chr5A.!!$R2 3594
1 TraesCS5A01G278800 chr5D 386146888 386152436 5548 True 851.25 2835 93.03125 705 3534 4 chr5D.!!$R1 2829
2 TraesCS5A01G278800 chr5B 463991492 463997567 6075 True 614.35 2634 90.23600 252 3595 6 chr5B.!!$R1 3343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.179100 TCTCTGCTATGTTCGCCAGC 60.179 55.0 0.00 0.0 35.82 4.85 F
232 233 0.251341 GGAGTGGGTTGCATCACCTT 60.251 55.0 7.49 0.0 36.97 3.50 F
384 385 0.615331 ACAGCACATCCAATCCTCGT 59.385 50.0 0.00 0.0 0.00 4.18 F
2205 5382 0.320160 GGAACGTGTACCACCACTCC 60.320 60.0 0.00 0.0 33.07 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 4360 1.374252 GTAGGTCCAGTGCACCGTG 60.374 63.158 14.63 6.13 39.13 4.94 R
2135 5312 1.180029 CCTCAGGAACAGGGCAAATG 58.820 55.000 0.00 0.00 0.00 2.32 R
2236 5413 2.426024 CCATGCCCTTGAAGATGTTGAG 59.574 50.000 0.00 0.00 0.00 3.02 R
3308 9378 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.068834 ACGACCTAGTCCCTGTATGG 57.931 55.000 0.00 0.00 0.00 2.74
20 21 1.287146 ACGACCTAGTCCCTGTATGGT 59.713 52.381 0.00 0.00 0.00 3.55
21 22 2.292061 ACGACCTAGTCCCTGTATGGTT 60.292 50.000 0.00 0.00 0.00 3.67
22 23 2.764572 CGACCTAGTCCCTGTATGGTTT 59.235 50.000 0.00 0.00 0.00 3.27
23 24 3.956199 CGACCTAGTCCCTGTATGGTTTA 59.044 47.826 0.00 0.00 0.00 2.01
24 25 4.403432 CGACCTAGTCCCTGTATGGTTTAA 59.597 45.833 0.00 0.00 0.00 1.52
25 26 5.451520 CGACCTAGTCCCTGTATGGTTTAAG 60.452 48.000 0.00 0.00 0.00 1.85
26 27 4.720273 ACCTAGTCCCTGTATGGTTTAAGG 59.280 45.833 0.00 0.00 0.00 2.69
27 28 3.646736 AGTCCCTGTATGGTTTAAGGC 57.353 47.619 0.00 0.00 0.00 4.35
28 29 2.916934 AGTCCCTGTATGGTTTAAGGCA 59.083 45.455 0.00 0.00 0.00 4.75
29 30 3.054361 AGTCCCTGTATGGTTTAAGGCAG 60.054 47.826 0.00 0.00 0.00 4.85
30 31 2.241176 TCCCTGTATGGTTTAAGGCAGG 59.759 50.000 0.00 0.00 42.11 4.85
31 32 2.654863 CCTGTATGGTTTAAGGCAGGG 58.345 52.381 0.00 0.00 39.65 4.45
32 33 2.654863 CTGTATGGTTTAAGGCAGGGG 58.345 52.381 0.00 0.00 0.00 4.79
33 34 1.997040 TGTATGGTTTAAGGCAGGGGT 59.003 47.619 0.00 0.00 0.00 4.95
34 35 2.380590 TGTATGGTTTAAGGCAGGGGTT 59.619 45.455 0.00 0.00 0.00 4.11
35 36 1.937191 ATGGTTTAAGGCAGGGGTTG 58.063 50.000 0.00 0.00 0.00 3.77
46 47 2.715749 CAGGGGTTGCTATCATGACA 57.284 50.000 0.00 0.00 0.00 3.58
47 48 3.219176 CAGGGGTTGCTATCATGACAT 57.781 47.619 0.00 0.00 0.00 3.06
48 49 2.882761 CAGGGGTTGCTATCATGACATG 59.117 50.000 9.28 9.28 0.00 3.21
49 50 2.158564 AGGGGTTGCTATCATGACATGG 60.159 50.000 15.37 0.90 0.00 3.66
50 51 2.158623 GGGGTTGCTATCATGACATGGA 60.159 50.000 15.37 3.48 0.00 3.41
51 52 2.880890 GGGTTGCTATCATGACATGGAC 59.119 50.000 15.37 3.73 0.00 4.02
52 53 2.545526 GGTTGCTATCATGACATGGACG 59.454 50.000 15.37 5.23 0.00 4.79
53 54 3.457234 GTTGCTATCATGACATGGACGA 58.543 45.455 15.37 0.00 0.00 4.20
54 55 3.817709 TGCTATCATGACATGGACGAA 57.182 42.857 15.37 0.00 0.00 3.85
55 56 3.721035 TGCTATCATGACATGGACGAAG 58.279 45.455 15.37 7.18 0.00 3.79
56 57 2.478134 GCTATCATGACATGGACGAAGC 59.522 50.000 15.37 12.38 0.00 3.86
57 58 2.696989 ATCATGACATGGACGAAGCA 57.303 45.000 15.37 0.00 0.00 3.91
58 59 2.470983 TCATGACATGGACGAAGCAA 57.529 45.000 15.37 0.00 0.00 3.91
59 60 2.989909 TCATGACATGGACGAAGCAAT 58.010 42.857 15.37 0.00 0.00 3.56
60 61 2.938451 TCATGACATGGACGAAGCAATC 59.062 45.455 15.37 0.00 0.00 2.67
61 62 2.768253 TGACATGGACGAAGCAATCT 57.232 45.000 0.00 0.00 0.00 2.40
62 63 2.621338 TGACATGGACGAAGCAATCTC 58.379 47.619 0.00 0.00 0.00 2.75
63 64 1.936547 GACATGGACGAAGCAATCTCC 59.063 52.381 0.00 0.00 0.00 3.71
64 65 1.278985 ACATGGACGAAGCAATCTCCA 59.721 47.619 0.00 10.71 38.71 3.86
65 66 1.938577 CATGGACGAAGCAATCTCCAG 59.061 52.381 12.60 5.70 38.16 3.86
66 67 1.266178 TGGACGAAGCAATCTCCAGA 58.734 50.000 0.00 0.00 33.28 3.86
67 68 1.066858 TGGACGAAGCAATCTCCAGAC 60.067 52.381 0.00 0.00 33.28 3.51
68 69 1.066858 GGACGAAGCAATCTCCAGACA 60.067 52.381 0.00 0.00 0.00 3.41
69 70 2.419297 GGACGAAGCAATCTCCAGACAT 60.419 50.000 0.00 0.00 0.00 3.06
70 71 3.265791 GACGAAGCAATCTCCAGACATT 58.734 45.455 0.00 0.00 0.00 2.71
71 72 3.265791 ACGAAGCAATCTCCAGACATTC 58.734 45.455 0.00 0.00 0.00 2.67
72 73 3.055530 ACGAAGCAATCTCCAGACATTCT 60.056 43.478 0.00 0.00 0.00 2.40
73 74 3.555139 CGAAGCAATCTCCAGACATTCTC 59.445 47.826 0.00 0.00 0.00 2.87
74 75 4.680172 CGAAGCAATCTCCAGACATTCTCT 60.680 45.833 0.00 0.00 0.00 3.10
75 76 4.405116 AGCAATCTCCAGACATTCTCTC 57.595 45.455 0.00 0.00 0.00 3.20
76 77 4.032310 AGCAATCTCCAGACATTCTCTCT 58.968 43.478 0.00 0.00 0.00 3.10
77 78 4.121317 GCAATCTCCAGACATTCTCTCTG 58.879 47.826 0.00 0.00 35.78 3.35
78 79 4.121317 CAATCTCCAGACATTCTCTCTGC 58.879 47.826 0.00 0.00 34.84 4.26
79 80 3.098774 TCTCCAGACATTCTCTCTGCT 57.901 47.619 0.00 0.00 34.84 4.24
80 81 4.242336 TCTCCAGACATTCTCTCTGCTA 57.758 45.455 0.00 0.00 34.84 3.49
81 82 4.802307 TCTCCAGACATTCTCTCTGCTAT 58.198 43.478 0.00 0.00 34.84 2.97
82 83 4.583907 TCTCCAGACATTCTCTCTGCTATG 59.416 45.833 0.00 0.00 34.84 2.23
83 84 4.285020 TCCAGACATTCTCTCTGCTATGT 58.715 43.478 0.00 0.00 34.84 2.29
84 85 4.713814 TCCAGACATTCTCTCTGCTATGTT 59.286 41.667 0.00 0.00 34.84 2.71
85 86 5.049167 CCAGACATTCTCTCTGCTATGTTC 58.951 45.833 0.00 0.00 34.84 3.18
86 87 4.739228 CAGACATTCTCTCTGCTATGTTCG 59.261 45.833 0.00 0.00 31.76 3.95
87 88 3.452474 ACATTCTCTCTGCTATGTTCGC 58.548 45.455 0.00 0.00 0.00 4.70
88 89 2.586258 TTCTCTCTGCTATGTTCGCC 57.414 50.000 0.00 0.00 0.00 5.54
89 90 1.474330 TCTCTCTGCTATGTTCGCCA 58.526 50.000 0.00 0.00 0.00 5.69
90 91 1.406898 TCTCTCTGCTATGTTCGCCAG 59.593 52.381 0.00 0.00 0.00 4.85
91 92 0.179100 TCTCTGCTATGTTCGCCAGC 60.179 55.000 0.00 0.00 35.82 4.85
92 93 1.485838 CTCTGCTATGTTCGCCAGCG 61.486 60.000 5.50 5.50 38.15 5.18
107 108 3.191903 AGCGATATTGCTGAGCGAG 57.808 52.632 17.01 0.00 45.28 5.03
108 109 0.387202 AGCGATATTGCTGAGCGAGT 59.613 50.000 17.01 0.00 45.28 4.18
109 110 1.202463 AGCGATATTGCTGAGCGAGTT 60.202 47.619 17.01 0.00 45.28 3.01
110 111 1.594862 GCGATATTGCTGAGCGAGTTT 59.405 47.619 7.76 0.00 0.00 2.66
111 112 2.794910 GCGATATTGCTGAGCGAGTTTA 59.205 45.455 7.76 0.00 0.00 2.01
112 113 3.121194 GCGATATTGCTGAGCGAGTTTAG 60.121 47.826 7.76 0.00 0.00 1.85
113 114 4.045104 CGATATTGCTGAGCGAGTTTAGT 58.955 43.478 0.00 0.00 0.00 2.24
114 115 4.147306 CGATATTGCTGAGCGAGTTTAGTC 59.853 45.833 0.00 0.00 0.00 2.59
115 116 3.601443 ATTGCTGAGCGAGTTTAGTCT 57.399 42.857 0.00 0.00 0.00 3.24
116 117 3.386768 TTGCTGAGCGAGTTTAGTCTT 57.613 42.857 0.00 0.00 0.00 3.01
117 118 2.677199 TGCTGAGCGAGTTTAGTCTTG 58.323 47.619 0.00 0.00 0.00 3.02
118 119 1.996191 GCTGAGCGAGTTTAGTCTTGG 59.004 52.381 0.00 0.00 0.00 3.61
119 120 2.611518 CTGAGCGAGTTTAGTCTTGGG 58.388 52.381 0.00 0.00 0.00 4.12
120 121 2.231478 CTGAGCGAGTTTAGTCTTGGGA 59.769 50.000 0.00 0.00 0.00 4.37
121 122 2.631062 TGAGCGAGTTTAGTCTTGGGAA 59.369 45.455 0.00 0.00 0.00 3.97
122 123 3.260884 TGAGCGAGTTTAGTCTTGGGAAT 59.739 43.478 0.00 0.00 0.00 3.01
123 124 3.600388 AGCGAGTTTAGTCTTGGGAATG 58.400 45.455 0.00 0.00 0.00 2.67
124 125 3.260884 AGCGAGTTTAGTCTTGGGAATGA 59.739 43.478 0.00 0.00 0.00 2.57
125 126 3.371285 GCGAGTTTAGTCTTGGGAATGAC 59.629 47.826 0.00 0.00 0.00 3.06
126 127 4.566004 CGAGTTTAGTCTTGGGAATGACA 58.434 43.478 0.00 0.00 35.81 3.58
127 128 4.389077 CGAGTTTAGTCTTGGGAATGACAC 59.611 45.833 0.00 0.00 35.81 3.67
128 129 4.315803 AGTTTAGTCTTGGGAATGACACG 58.684 43.478 0.00 0.00 35.81 4.49
129 130 4.062991 GTTTAGTCTTGGGAATGACACGT 58.937 43.478 0.00 0.00 35.81 4.49
130 131 2.930826 AGTCTTGGGAATGACACGTT 57.069 45.000 0.00 0.00 35.81 3.99
131 132 2.767505 AGTCTTGGGAATGACACGTTC 58.232 47.619 0.00 0.00 35.81 3.95
132 133 2.368875 AGTCTTGGGAATGACACGTTCT 59.631 45.455 0.00 0.00 35.81 3.01
133 134 3.576982 AGTCTTGGGAATGACACGTTCTA 59.423 43.478 0.00 0.00 35.81 2.10
134 135 3.927142 GTCTTGGGAATGACACGTTCTAG 59.073 47.826 0.00 0.00 33.75 2.43
135 136 3.576982 TCTTGGGAATGACACGTTCTAGT 59.423 43.478 0.00 0.00 0.00 2.57
136 137 4.039973 TCTTGGGAATGACACGTTCTAGTT 59.960 41.667 0.00 0.00 0.00 2.24
137 138 4.345859 TGGGAATGACACGTTCTAGTTT 57.654 40.909 0.00 0.00 0.00 2.66
138 139 5.471556 TGGGAATGACACGTTCTAGTTTA 57.528 39.130 0.00 0.00 0.00 2.01
139 140 5.475719 TGGGAATGACACGTTCTAGTTTAG 58.524 41.667 0.00 0.00 0.00 1.85
140 141 5.244402 TGGGAATGACACGTTCTAGTTTAGA 59.756 40.000 0.00 0.00 0.00 2.10
141 142 6.161381 GGGAATGACACGTTCTAGTTTAGAA 58.839 40.000 0.00 0.00 42.19 2.10
142 143 6.647895 GGGAATGACACGTTCTAGTTTAGAAA 59.352 38.462 0.42 0.00 45.56 2.52
143 144 7.172019 GGGAATGACACGTTCTAGTTTAGAAAA 59.828 37.037 0.42 0.00 45.56 2.29
144 145 8.008279 GGAATGACACGTTCTAGTTTAGAAAAC 58.992 37.037 0.42 0.00 45.56 2.43
145 146 6.500775 TGACACGTTCTAGTTTAGAAAACG 57.499 37.500 8.55 8.55 45.56 3.60
146 147 5.459762 TGACACGTTCTAGTTTAGAAAACGG 59.540 40.000 13.16 6.58 45.56 4.44
147 148 5.591099 ACACGTTCTAGTTTAGAAAACGGA 58.409 37.500 13.16 0.00 45.56 4.69
148 149 6.042143 ACACGTTCTAGTTTAGAAAACGGAA 58.958 36.000 13.16 8.66 45.56 4.30
149 150 6.534793 ACACGTTCTAGTTTAGAAAACGGAAA 59.465 34.615 13.16 1.46 45.56 3.13
150 151 7.225341 ACACGTTCTAGTTTAGAAAACGGAAAT 59.775 33.333 13.16 5.38 45.56 2.17
151 152 7.529519 CACGTTCTAGTTTAGAAAACGGAAATG 59.470 37.037 13.16 10.64 45.56 2.32
152 153 7.225341 ACGTTCTAGTTTAGAAAACGGAAATGT 59.775 33.333 13.16 11.26 45.56 2.71
153 154 7.529519 CGTTCTAGTTTAGAAAACGGAAATGTG 59.470 37.037 12.08 4.36 45.56 3.21
154 155 8.553696 GTTCTAGTTTAGAAAACGGAAATGTGA 58.446 33.333 12.08 0.00 45.56 3.58
155 156 8.842358 TCTAGTTTAGAAAACGGAAATGTGAT 57.158 30.769 0.00 0.00 0.00 3.06
156 157 9.280174 TCTAGTTTAGAAAACGGAAATGTGATT 57.720 29.630 0.00 0.00 0.00 2.57
159 160 9.673454 AGTTTAGAAAACGGAAATGTGATTAAC 57.327 29.630 0.00 0.00 0.00 2.01
160 161 8.908678 GTTTAGAAAACGGAAATGTGATTAACC 58.091 33.333 0.00 0.00 0.00 2.85
161 162 5.695818 AGAAAACGGAAATGTGATTAACCG 58.304 37.500 0.00 0.00 43.13 4.44
162 163 5.470777 AGAAAACGGAAATGTGATTAACCGA 59.529 36.000 16.33 0.00 41.45 4.69
163 164 4.939509 AACGGAAATGTGATTAACCGAG 57.060 40.909 16.33 0.00 41.45 4.63
164 165 4.196626 ACGGAAATGTGATTAACCGAGA 57.803 40.909 16.33 0.00 41.45 4.04
165 166 4.181578 ACGGAAATGTGATTAACCGAGAG 58.818 43.478 16.33 0.00 41.45 3.20
166 167 3.001330 CGGAAATGTGATTAACCGAGAGC 59.999 47.826 0.00 0.00 41.45 4.09
167 168 3.938963 GGAAATGTGATTAACCGAGAGCA 59.061 43.478 0.00 0.00 0.00 4.26
168 169 4.394920 GGAAATGTGATTAACCGAGAGCAA 59.605 41.667 0.00 0.00 0.00 3.91
169 170 5.447818 GGAAATGTGATTAACCGAGAGCAAG 60.448 44.000 0.00 0.00 0.00 4.01
170 171 3.678056 TGTGATTAACCGAGAGCAAGT 57.322 42.857 0.00 0.00 0.00 3.16
171 172 4.794278 TGTGATTAACCGAGAGCAAGTA 57.206 40.909 0.00 0.00 0.00 2.24
172 173 4.744570 TGTGATTAACCGAGAGCAAGTAG 58.255 43.478 0.00 0.00 0.00 2.57
173 174 4.461431 TGTGATTAACCGAGAGCAAGTAGA 59.539 41.667 0.00 0.00 0.00 2.59
174 175 5.038033 GTGATTAACCGAGAGCAAGTAGAG 58.962 45.833 0.00 0.00 0.00 2.43
175 176 4.705507 TGATTAACCGAGAGCAAGTAGAGT 59.294 41.667 0.00 0.00 0.00 3.24
176 177 5.185249 TGATTAACCGAGAGCAAGTAGAGTT 59.815 40.000 0.00 0.00 0.00 3.01
177 178 5.464030 TTAACCGAGAGCAAGTAGAGTTT 57.536 39.130 0.00 0.00 0.00 2.66
178 179 3.305398 ACCGAGAGCAAGTAGAGTTTG 57.695 47.619 0.00 0.00 0.00 2.93
179 180 2.891580 ACCGAGAGCAAGTAGAGTTTGA 59.108 45.455 0.00 0.00 0.00 2.69
180 181 3.511934 ACCGAGAGCAAGTAGAGTTTGAT 59.488 43.478 0.00 0.00 0.00 2.57
181 182 4.109050 CCGAGAGCAAGTAGAGTTTGATC 58.891 47.826 0.00 0.00 40.31 2.92
182 183 4.380973 CCGAGAGCAAGTAGAGTTTGATCA 60.381 45.833 6.09 0.00 41.94 2.92
183 184 5.164233 CGAGAGCAAGTAGAGTTTGATCAA 58.836 41.667 3.38 3.38 41.94 2.57
184 185 5.635280 CGAGAGCAAGTAGAGTTTGATCAAA 59.365 40.000 16.91 16.91 41.94 2.69
185 186 6.312426 CGAGAGCAAGTAGAGTTTGATCAAAT 59.688 38.462 23.05 12.45 41.94 2.32
186 187 7.463913 CGAGAGCAAGTAGAGTTTGATCAAATC 60.464 40.741 23.05 19.09 41.94 2.17
187 188 7.164122 AGAGCAAGTAGAGTTTGATCAAATCA 58.836 34.615 23.05 6.96 41.94 2.57
188 189 7.118971 AGAGCAAGTAGAGTTTGATCAAATCAC 59.881 37.037 23.05 16.84 41.94 3.06
189 190 6.150140 AGCAAGTAGAGTTTGATCAAATCACC 59.850 38.462 23.05 10.80 39.39 4.02
190 191 6.072508 GCAAGTAGAGTTTGATCAAATCACCA 60.073 38.462 23.05 6.31 39.39 4.17
191 192 7.522073 GCAAGTAGAGTTTGATCAAATCACCAA 60.522 37.037 23.05 5.65 39.39 3.67
192 193 7.678947 AGTAGAGTTTGATCAAATCACCAAG 57.321 36.000 23.05 0.00 39.39 3.61
193 194 7.227156 AGTAGAGTTTGATCAAATCACCAAGT 58.773 34.615 23.05 2.68 39.39 3.16
194 195 6.323203 AGAGTTTGATCAAATCACCAAGTG 57.677 37.500 23.05 0.00 39.39 3.16
195 196 5.242393 AGAGTTTGATCAAATCACCAAGTGG 59.758 40.000 23.05 0.00 39.39 4.00
196 197 4.281688 AGTTTGATCAAATCACCAAGTGGG 59.718 41.667 23.05 0.00 39.39 4.61
197 198 4.039124 GTTTGATCAAATCACCAAGTGGGT 59.961 41.667 23.05 0.00 40.89 4.51
198 199 5.453198 GTTTGATCAAATCACCAAGTGGGTT 60.453 40.000 23.05 0.00 39.28 4.11
199 200 6.907877 GTTTGATCAAATCACCAAGTGGGTTT 60.908 38.462 23.05 0.00 39.28 3.27
200 201 8.329071 GTTTGATCAAATCACCAAGTGGGTTTT 61.329 37.037 23.05 0.00 39.28 2.43
227 228 2.043953 GGGGGAGTGGGTTGCATC 60.044 66.667 0.00 0.00 0.00 3.91
228 229 2.763215 GGGGAGTGGGTTGCATCA 59.237 61.111 0.00 0.00 0.00 3.07
229 230 1.678970 GGGGAGTGGGTTGCATCAC 60.679 63.158 7.11 7.11 0.00 3.06
230 231 1.678970 GGGAGTGGGTTGCATCACC 60.679 63.158 0.00 0.00 34.67 4.02
231 232 1.380302 GGAGTGGGTTGCATCACCT 59.620 57.895 7.49 0.00 36.97 4.00
232 233 0.251341 GGAGTGGGTTGCATCACCTT 60.251 55.000 7.49 0.00 36.97 3.50
233 234 1.620822 GAGTGGGTTGCATCACCTTT 58.379 50.000 7.49 0.00 36.97 3.11
234 235 2.554344 GGAGTGGGTTGCATCACCTTTA 60.554 50.000 7.49 0.00 36.97 1.85
235 236 3.153919 GAGTGGGTTGCATCACCTTTAA 58.846 45.455 7.49 0.00 36.97 1.52
236 237 3.763897 GAGTGGGTTGCATCACCTTTAAT 59.236 43.478 7.49 0.00 36.97 1.40
237 238 4.159557 AGTGGGTTGCATCACCTTTAATT 58.840 39.130 7.49 0.00 36.97 1.40
238 239 4.220602 AGTGGGTTGCATCACCTTTAATTC 59.779 41.667 7.49 0.00 36.97 2.17
239 240 3.513515 TGGGTTGCATCACCTTTAATTCC 59.486 43.478 7.49 0.00 36.97 3.01
240 241 3.769300 GGGTTGCATCACCTTTAATTCCT 59.231 43.478 7.49 0.00 36.97 3.36
241 242 4.953579 GGGTTGCATCACCTTTAATTCCTA 59.046 41.667 7.49 0.00 36.97 2.94
242 243 5.163550 GGGTTGCATCACCTTTAATTCCTAC 60.164 44.000 7.49 0.00 36.97 3.18
243 244 5.652452 GGTTGCATCACCTTTAATTCCTACT 59.348 40.000 0.00 0.00 33.50 2.57
244 245 6.826741 GGTTGCATCACCTTTAATTCCTACTA 59.173 38.462 0.00 0.00 33.50 1.82
245 246 7.502561 GGTTGCATCACCTTTAATTCCTACTAT 59.497 37.037 0.00 0.00 33.50 2.12
246 247 9.555727 GTTGCATCACCTTTAATTCCTACTATA 57.444 33.333 0.00 0.00 0.00 1.31
248 249 9.944376 TGCATCACCTTTAATTCCTACTATATC 57.056 33.333 0.00 0.00 0.00 1.63
249 250 9.944376 GCATCACCTTTAATTCCTACTATATCA 57.056 33.333 0.00 0.00 0.00 2.15
328 329 9.817809 ATAGAATAAAGAACGTCATTAAGCTCA 57.182 29.630 0.00 0.00 0.00 4.26
329 330 8.723942 AGAATAAAGAACGTCATTAAGCTCAT 57.276 30.769 0.00 0.00 0.00 2.90
330 331 8.821894 AGAATAAAGAACGTCATTAAGCTCATC 58.178 33.333 0.00 0.00 0.00 2.92
331 332 8.492673 AATAAAGAACGTCATTAAGCTCATCA 57.507 30.769 0.00 0.00 0.00 3.07
332 333 6.992063 AAAGAACGTCATTAAGCTCATCAT 57.008 33.333 0.00 0.00 0.00 2.45
333 334 6.992063 AAGAACGTCATTAAGCTCATCATT 57.008 33.333 0.00 0.00 0.00 2.57
334 335 6.992063 AGAACGTCATTAAGCTCATCATTT 57.008 33.333 0.00 0.00 0.00 2.32
335 336 7.009568 AGAACGTCATTAAGCTCATCATTTC 57.990 36.000 0.00 0.00 0.00 2.17
336 337 6.820656 AGAACGTCATTAAGCTCATCATTTCT 59.179 34.615 0.00 0.00 0.00 2.52
337 338 6.355397 ACGTCATTAAGCTCATCATTTCTG 57.645 37.500 0.00 0.00 0.00 3.02
338 339 5.295292 ACGTCATTAAGCTCATCATTTCTGG 59.705 40.000 0.00 0.00 0.00 3.86
339 340 5.517904 GTCATTAAGCTCATCATTTCTGGC 58.482 41.667 0.00 0.00 0.00 4.85
340 341 5.298777 GTCATTAAGCTCATCATTTCTGGCT 59.701 40.000 0.00 0.00 0.00 4.75
341 342 5.889853 TCATTAAGCTCATCATTTCTGGCTT 59.110 36.000 0.00 0.00 41.78 4.35
342 343 5.571784 TTAAGCTCATCATTTCTGGCTTG 57.428 39.130 8.03 0.00 39.76 4.01
343 344 3.361281 AGCTCATCATTTCTGGCTTGA 57.639 42.857 0.00 0.00 0.00 3.02
344 345 3.015327 AGCTCATCATTTCTGGCTTGAC 58.985 45.455 0.00 0.00 0.00 3.18
345 346 2.751259 GCTCATCATTTCTGGCTTGACA 59.249 45.455 0.00 0.00 0.00 3.58
384 385 0.615331 ACAGCACATCCAATCCTCGT 59.385 50.000 0.00 0.00 0.00 4.18
441 442 2.519771 TCTCTTGAGGGGCGTTACTA 57.480 50.000 0.00 0.00 0.00 1.82
442 443 2.811410 TCTCTTGAGGGGCGTTACTAA 58.189 47.619 0.00 0.00 0.00 2.24
473 474 6.220726 ACTTCTCTTGAGATTCTAGAAGGC 57.779 41.667 20.36 5.73 44.75 4.35
476 477 8.455899 ACTTCTCTTGAGATTCTAGAAGGCACT 61.456 40.741 20.36 7.51 44.75 4.40
552 553 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
553 554 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
554 555 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
555 556 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
556 557 9.080097 GCTCTTATATTAGTTTACAGAGGGAGA 57.920 37.037 0.00 0.00 0.00 3.71
560 561 9.998106 TTATATTAGTTTACAGAGGGAGAATGC 57.002 33.333 0.00 0.00 0.00 3.56
581 583 4.883585 TGCCATTCTTCAACTCCATATCAC 59.116 41.667 0.00 0.00 0.00 3.06
587 589 4.971282 TCTTCAACTCCATATCACCTCCAT 59.029 41.667 0.00 0.00 0.00 3.41
604 606 1.471501 CCATCATGTCACCATCGTCGT 60.472 52.381 0.00 0.00 0.00 4.34
606 608 2.554806 TCATGTCACCATCGTCGTAC 57.445 50.000 0.00 0.00 0.00 3.67
607 609 1.813786 TCATGTCACCATCGTCGTACA 59.186 47.619 0.00 0.00 0.00 2.90
608 610 1.917955 CATGTCACCATCGTCGTACAC 59.082 52.381 0.00 0.00 0.00 2.90
609 611 0.953003 TGTCACCATCGTCGTACACA 59.047 50.000 0.00 0.00 0.00 3.72
610 612 1.334054 GTCACCATCGTCGTACACAC 58.666 55.000 0.00 0.00 0.00 3.82
617 619 3.546271 CCATCGTCGTACACACATGTTAG 59.454 47.826 0.00 0.00 40.48 2.34
647 649 1.716172 GAAGGCCGCATCGAGAAAC 59.284 57.895 0.00 0.00 0.00 2.78
651 653 3.913573 CCGCATCGAGAAACGGCG 61.914 66.667 4.80 4.80 46.23 6.46
657 659 1.860950 CATCGAGAAACGGCGATCATT 59.139 47.619 16.62 2.43 44.56 2.57
691 693 3.944087 ACAACAAGGGATCTAGCTCAAC 58.056 45.455 0.00 0.00 0.00 3.18
751 754 2.178912 TTTGTACTCGGGCTTTCCAG 57.821 50.000 0.00 0.00 34.36 3.86
777 780 1.009829 GTTTATGCTCAGGGTGCTCG 58.990 55.000 0.00 0.00 0.00 5.03
903 4047 4.695455 CCTGGTTTTGTCTACACCTGTATG 59.305 45.833 0.00 0.00 0.00 2.39
904 4048 5.298989 TGGTTTTGTCTACACCTGTATGT 57.701 39.130 0.00 0.00 36.56 2.29
905 4049 5.060506 TGGTTTTGTCTACACCTGTATGTG 58.939 41.667 0.00 0.00 42.05 3.21
906 4050 5.163290 TGGTTTTGTCTACACCTGTATGTGA 60.163 40.000 0.00 0.00 39.57 3.58
907 4051 5.178809 GGTTTTGTCTACACCTGTATGTGAC 59.821 44.000 0.00 0.00 39.57 3.67
908 4052 5.801531 TTTGTCTACACCTGTATGTGACT 57.198 39.130 0.00 0.00 39.57 3.41
909 4053 4.783764 TGTCTACACCTGTATGTGACTG 57.216 45.455 0.00 0.00 39.57 3.51
910 4054 4.149598 TGTCTACACCTGTATGTGACTGT 58.850 43.478 0.00 0.00 39.57 3.55
911 4055 5.318630 TGTCTACACCTGTATGTGACTGTA 58.681 41.667 0.00 0.00 39.57 2.74
912 4056 5.949952 TGTCTACACCTGTATGTGACTGTAT 59.050 40.000 0.00 0.00 39.57 2.29
1411 4555 0.804933 GGACGTACAACATCTCCGGC 60.805 60.000 0.00 0.00 0.00 6.13
1727 4875 4.409574 AGCTCTCTTCAATCATCACCTGAT 59.590 41.667 0.00 0.00 46.87 2.90
1780 4945 2.352651 CCGACTGACTAAACCATGCATG 59.647 50.000 20.19 20.19 0.00 4.06
1781 4952 3.002791 CGACTGACTAAACCATGCATGT 58.997 45.455 24.58 9.62 0.00 3.21
1798 4969 3.428452 GCATGTTGTTCAGATCCATGGTG 60.428 47.826 12.58 2.68 34.80 4.17
1928 5099 2.024319 GCCAGATCATCGGCTACGC 61.024 63.158 11.84 0.00 45.29 4.42
1971 5142 2.114670 CGGCATCAACCTCGGCAAT 61.115 57.895 0.00 0.00 0.00 3.56
2090 5266 6.040391 ACTTCCCAAATTCAAATTGAACTCGA 59.960 34.615 10.91 0.35 39.45 4.04
2091 5267 6.588719 TCCCAAATTCAAATTGAACTCGAT 57.411 33.333 10.91 0.00 39.45 3.59
2092 5268 6.620678 TCCCAAATTCAAATTGAACTCGATC 58.379 36.000 10.91 0.00 39.45 3.69
2093 5269 5.512788 CCCAAATTCAAATTGAACTCGATCG 59.487 40.000 10.91 9.36 39.45 3.69
2102 5278 1.268386 TGAACTCGATCGTACCGATGC 60.268 52.381 15.94 0.00 47.00 3.91
2135 5312 3.423154 CTTGAACGGCGTCCAGGC 61.423 66.667 15.17 1.22 42.76 4.85
2192 5369 2.049802 CCGCGTGTACTGGAACGT 60.050 61.111 4.92 0.00 41.76 3.99
2203 5380 0.391597 CTGGAACGTGTACCACCACT 59.608 55.000 5.47 0.00 33.07 4.00
2205 5382 0.320160 GGAACGTGTACCACCACTCC 60.320 60.000 0.00 0.00 33.07 3.85
2236 5413 0.668706 CGTCATCATCCTCGGCATCC 60.669 60.000 0.00 0.00 0.00 3.51
2259 5436 1.033746 ACATCTTCAAGGGCATGGCG 61.034 55.000 13.76 0.00 0.00 5.69
2429 5606 2.275418 CTAACCCAATGGCCGCCT 59.725 61.111 11.61 0.00 33.59 5.52
2462 5643 5.209240 CGTGTAGTAGCTAGCTTTGAGATC 58.791 45.833 24.88 7.80 0.00 2.75
2492 5673 4.159693 ACGTACTGAGATCTGGCATTTGTA 59.840 41.667 0.00 0.00 0.00 2.41
2527 5708 1.204941 GTGTGTAGTAGAGCTGGTGGG 59.795 57.143 0.00 0.00 0.00 4.61
3000 6357 2.500910 CAAGCTCTGACTCTCCTCCATT 59.499 50.000 0.00 0.00 0.00 3.16
3001 6358 3.678965 AGCTCTGACTCTCCTCCATTA 57.321 47.619 0.00 0.00 0.00 1.90
3028 6385 4.864334 CTGCCACCTCATCCCCGC 62.864 72.222 0.00 0.00 0.00 6.13
3174 9244 8.954950 ATTTGTTGGTTGTGTTGATTTTATCA 57.045 26.923 0.00 0.00 37.55 2.15
3175 9245 8.417780 TTTGTTGGTTGTGTTGATTTTATCAG 57.582 30.769 0.00 0.00 40.94 2.90
3176 9246 5.982516 TGTTGGTTGTGTTGATTTTATCAGC 59.017 36.000 0.00 0.00 40.94 4.26
3177 9247 5.781210 TGGTTGTGTTGATTTTATCAGCA 57.219 34.783 2.62 2.62 46.16 4.41
3194 9264 1.634702 GCAGTCTTGCTAAGTCTCGG 58.365 55.000 0.00 0.00 46.95 4.63
3195 9265 1.067495 GCAGTCTTGCTAAGTCTCGGT 60.067 52.381 0.00 0.00 46.95 4.69
3196 9266 2.869897 CAGTCTTGCTAAGTCTCGGTC 58.130 52.381 0.00 0.00 0.00 4.79
3197 9267 1.469308 AGTCTTGCTAAGTCTCGGTCG 59.531 52.381 0.00 0.00 0.00 4.79
3198 9268 1.467734 GTCTTGCTAAGTCTCGGTCGA 59.532 52.381 0.00 0.00 0.00 4.20
3199 9269 2.097791 GTCTTGCTAAGTCTCGGTCGAT 59.902 50.000 0.00 0.00 0.00 3.59
3200 9270 2.097629 TCTTGCTAAGTCTCGGTCGATG 59.902 50.000 0.00 0.00 0.00 3.84
3201 9271 0.100682 TGCTAAGTCTCGGTCGATGC 59.899 55.000 0.00 0.00 0.00 3.91
3202 9272 0.382515 GCTAAGTCTCGGTCGATGCT 59.617 55.000 0.00 0.00 0.00 3.79
3203 9273 1.602851 GCTAAGTCTCGGTCGATGCTA 59.397 52.381 0.00 0.00 0.00 3.49
3204 9274 2.226912 GCTAAGTCTCGGTCGATGCTAT 59.773 50.000 0.00 0.00 0.00 2.97
3205 9275 3.436015 GCTAAGTCTCGGTCGATGCTATA 59.564 47.826 0.00 0.00 0.00 1.31
3206 9276 4.095185 GCTAAGTCTCGGTCGATGCTATAT 59.905 45.833 0.00 0.00 0.00 0.86
3207 9277 5.392165 GCTAAGTCTCGGTCGATGCTATATT 60.392 44.000 0.00 0.00 0.00 1.28
3208 9278 4.688511 AGTCTCGGTCGATGCTATATTC 57.311 45.455 0.00 0.00 0.00 1.75
3209 9279 4.072839 AGTCTCGGTCGATGCTATATTCA 58.927 43.478 0.00 0.00 0.00 2.57
3210 9280 4.702612 AGTCTCGGTCGATGCTATATTCAT 59.297 41.667 0.00 0.00 0.00 2.57
3211 9281 5.880887 AGTCTCGGTCGATGCTATATTCATA 59.119 40.000 0.00 0.00 0.00 2.15
3212 9282 6.374613 AGTCTCGGTCGATGCTATATTCATAA 59.625 38.462 0.00 0.00 0.00 1.90
3213 9283 6.689241 GTCTCGGTCGATGCTATATTCATAAG 59.311 42.308 0.00 0.00 0.00 1.73
3214 9284 6.598064 TCTCGGTCGATGCTATATTCATAAGA 59.402 38.462 0.00 0.00 0.00 2.10
3215 9285 7.283354 TCTCGGTCGATGCTATATTCATAAGAT 59.717 37.037 0.00 0.00 0.00 2.40
3216 9286 7.772166 TCGGTCGATGCTATATTCATAAGATT 58.228 34.615 0.00 0.00 0.00 2.40
3217 9287 8.251026 TCGGTCGATGCTATATTCATAAGATTT 58.749 33.333 0.00 0.00 0.00 2.17
3218 9288 8.873830 CGGTCGATGCTATATTCATAAGATTTT 58.126 33.333 0.00 0.00 0.00 1.82
3237 9307 9.947433 AAGATTTTATTTTGAGATCCATGCAAA 57.053 25.926 0.00 0.00 0.00 3.68
3285 9355 9.554395 TTTTCTCTTACATGTTATGTCACTTGA 57.446 29.630 2.30 0.00 43.67 3.02
3286 9356 8.534333 TTCTCTTACATGTTATGTCACTTGAC 57.466 34.615 2.30 2.19 43.67 3.18
3287 9357 7.896811 TCTCTTACATGTTATGTCACTTGACT 58.103 34.615 2.30 0.00 43.67 3.41
3288 9358 7.814587 TCTCTTACATGTTATGTCACTTGACTG 59.185 37.037 2.30 2.33 43.67 3.51
3289 9359 7.666623 TCTTACATGTTATGTCACTTGACTGA 58.333 34.615 2.30 0.00 43.67 3.41
3290 9360 7.814587 TCTTACATGTTATGTCACTTGACTGAG 59.185 37.037 2.30 0.00 43.67 3.35
3291 9361 6.101650 ACATGTTATGTCACTTGACTGAGA 57.898 37.500 10.63 0.00 44.99 3.27
3292 9362 5.928839 ACATGTTATGTCACTTGACTGAGAC 59.071 40.000 10.63 5.26 44.99 3.36
3293 9363 5.791336 TGTTATGTCACTTGACTGAGACT 57.209 39.130 10.63 0.00 44.99 3.24
3294 9364 6.161855 TGTTATGTCACTTGACTGAGACTT 57.838 37.500 10.63 0.00 44.99 3.01
3295 9365 5.985530 TGTTATGTCACTTGACTGAGACTTG 59.014 40.000 10.63 0.00 44.99 3.16
3296 9366 3.459232 TGTCACTTGACTGAGACTTGG 57.541 47.619 10.63 0.00 44.99 3.61
3297 9367 2.766263 TGTCACTTGACTGAGACTTGGT 59.234 45.455 10.63 0.00 44.99 3.67
3298 9368 3.197766 TGTCACTTGACTGAGACTTGGTT 59.802 43.478 10.63 0.00 44.99 3.67
3299 9369 4.404394 TGTCACTTGACTGAGACTTGGTTA 59.596 41.667 10.63 0.00 44.99 2.85
3300 9370 5.105106 TGTCACTTGACTGAGACTTGGTTAA 60.105 40.000 10.63 0.00 44.99 2.01
3301 9371 5.815740 GTCACTTGACTGAGACTTGGTTAAA 59.184 40.000 1.92 0.00 41.65 1.52
3302 9372 6.483640 GTCACTTGACTGAGACTTGGTTAAAT 59.516 38.462 1.92 0.00 41.65 1.40
3303 9373 6.706270 TCACTTGACTGAGACTTGGTTAAATC 59.294 38.462 0.00 0.00 0.00 2.17
3304 9374 5.998363 ACTTGACTGAGACTTGGTTAAATCC 59.002 40.000 0.00 0.00 0.00 3.01
3305 9375 4.906618 TGACTGAGACTTGGTTAAATCCC 58.093 43.478 0.00 0.00 0.00 3.85
3306 9376 4.349636 TGACTGAGACTTGGTTAAATCCCA 59.650 41.667 0.00 0.00 0.00 4.37
3307 9377 4.911390 ACTGAGACTTGGTTAAATCCCAG 58.089 43.478 0.00 0.00 32.49 4.45
3308 9378 4.351111 ACTGAGACTTGGTTAAATCCCAGT 59.649 41.667 0.00 0.00 36.39 4.00
3309 9379 4.906618 TGAGACTTGGTTAAATCCCAGTC 58.093 43.478 7.81 7.81 45.11 3.51
3311 9381 3.934068 GACTTGGTTAAATCCCAGTCGA 58.066 45.455 1.89 0.00 39.35 4.20
3312 9382 3.671716 ACTTGGTTAAATCCCAGTCGAC 58.328 45.455 7.70 7.70 29.10 4.20
3313 9383 3.326880 ACTTGGTTAAATCCCAGTCGACT 59.673 43.478 13.58 13.58 29.10 4.18
3314 9384 3.328382 TGGTTAAATCCCAGTCGACTG 57.672 47.619 33.87 33.87 43.40 3.51
3315 9385 2.901192 TGGTTAAATCCCAGTCGACTGA 59.099 45.455 40.21 25.41 46.59 3.41
3316 9386 3.056107 TGGTTAAATCCCAGTCGACTGAG 60.056 47.826 40.21 30.85 46.59 3.35
3317 9387 3.194968 GGTTAAATCCCAGTCGACTGAGA 59.805 47.826 40.21 34.61 46.59 3.27
3318 9388 4.174762 GTTAAATCCCAGTCGACTGAGAC 58.825 47.826 40.21 20.81 46.59 3.36
3319 9389 1.187087 AATCCCAGTCGACTGAGACC 58.813 55.000 40.21 2.64 46.59 3.85
3320 9390 0.333312 ATCCCAGTCGACTGAGACCT 59.667 55.000 40.21 20.42 46.59 3.85
3321 9391 0.989602 TCCCAGTCGACTGAGACCTA 59.010 55.000 40.21 18.86 46.59 3.08
3322 9392 1.065345 TCCCAGTCGACTGAGACCTAG 60.065 57.143 40.21 23.78 46.59 3.02
3323 9393 0.736053 CCAGTCGACTGAGACCTAGC 59.264 60.000 40.21 0.00 46.59 3.42
3324 9394 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
3325 9395 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
3326 9396 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
3327 9397 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
3328 9398 0.171455 CGACTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 0.00 3.82
3329 9399 0.533032 GACTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 0.00 4.16
3330 9400 0.115349 ACTGAGACCTAGCCACACCT 59.885 55.000 0.00 0.00 0.00 4.00
3331 9401 1.270907 CTGAGACCTAGCCACACCTT 58.729 55.000 0.00 0.00 0.00 3.50
3332 9402 1.625818 CTGAGACCTAGCCACACCTTT 59.374 52.381 0.00 0.00 0.00 3.11
3333 9403 2.039084 CTGAGACCTAGCCACACCTTTT 59.961 50.000 0.00 0.00 0.00 2.27
3334 9404 3.244582 TGAGACCTAGCCACACCTTTTA 58.755 45.455 0.00 0.00 0.00 1.52
3335 9405 3.844211 TGAGACCTAGCCACACCTTTTAT 59.156 43.478 0.00 0.00 0.00 1.40
3336 9406 4.081087 TGAGACCTAGCCACACCTTTTATC 60.081 45.833 0.00 0.00 0.00 1.75
3446 9516 3.192212 CCTTTAGCAAAAGAGAAGCTGGG 59.808 47.826 0.00 0.00 44.14 4.45
3451 9521 3.927481 AAAGAGAAGCTGGGCGGGC 62.927 63.158 0.00 0.00 0.00 6.13
3483 9553 2.438254 TCGGTGGACCATGCATGC 60.438 61.111 21.69 11.82 35.14 4.06
3484 9554 3.879682 CGGTGGACCATGCATGCG 61.880 66.667 21.69 16.19 35.14 4.73
3534 9604 7.972277 GGTGAAGTACAAACGAAGACAGATATA 59.028 37.037 0.00 0.00 0.00 0.86
3535 9605 9.517609 GTGAAGTACAAACGAAGACAGATATAT 57.482 33.333 0.00 0.00 0.00 0.86
3581 9651 3.313526 CAGATATGGGAACGCAGAAAAGG 59.686 47.826 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.287146 ACCATACAGGGACTAGGTCGT 59.713 52.381 0.00 0.00 43.89 4.34
1 2 2.068834 ACCATACAGGGACTAGGTCG 57.931 55.000 0.00 0.00 43.89 4.79
3 4 4.720273 CCTTAAACCATACAGGGACTAGGT 59.280 45.833 0.00 0.00 43.89 3.08
5 6 4.163458 TGCCTTAAACCATACAGGGACTAG 59.837 45.833 0.00 0.00 43.89 2.57
6 7 4.105577 TGCCTTAAACCATACAGGGACTA 58.894 43.478 0.00 0.00 43.89 2.59
7 8 2.916934 TGCCTTAAACCATACAGGGACT 59.083 45.455 0.00 0.00 43.89 3.85
8 9 3.279434 CTGCCTTAAACCATACAGGGAC 58.721 50.000 0.00 0.00 43.89 4.46
9 10 2.241176 CCTGCCTTAAACCATACAGGGA 59.759 50.000 0.00 0.00 43.89 4.20
10 11 2.654863 CCTGCCTTAAACCATACAGGG 58.345 52.381 0.00 0.00 43.89 4.45
11 12 2.654863 CCCTGCCTTAAACCATACAGG 58.345 52.381 0.00 0.00 43.47 4.00
12 13 2.025321 ACCCCTGCCTTAAACCATACAG 60.025 50.000 0.00 0.00 0.00 2.74
13 14 1.997040 ACCCCTGCCTTAAACCATACA 59.003 47.619 0.00 0.00 0.00 2.29
14 15 2.758423 CAACCCCTGCCTTAAACCATAC 59.242 50.000 0.00 0.00 0.00 2.39
15 16 2.886391 GCAACCCCTGCCTTAAACCATA 60.886 50.000 0.00 0.00 46.13 2.74
16 17 1.937191 CAACCCCTGCCTTAAACCAT 58.063 50.000 0.00 0.00 0.00 3.55
17 18 0.830023 GCAACCCCTGCCTTAAACCA 60.830 55.000 0.00 0.00 46.13 3.67
18 19 1.972198 GCAACCCCTGCCTTAAACC 59.028 57.895 0.00 0.00 46.13 3.27
27 28 2.715749 TGTCATGATAGCAACCCCTG 57.284 50.000 0.00 0.00 0.00 4.45
28 29 2.158564 CCATGTCATGATAGCAACCCCT 60.159 50.000 14.67 0.00 0.00 4.79
29 30 2.158623 TCCATGTCATGATAGCAACCCC 60.159 50.000 14.67 0.00 0.00 4.95
30 31 2.880890 GTCCATGTCATGATAGCAACCC 59.119 50.000 14.67 0.00 0.00 4.11
31 32 2.545526 CGTCCATGTCATGATAGCAACC 59.454 50.000 14.67 0.00 0.00 3.77
32 33 3.457234 TCGTCCATGTCATGATAGCAAC 58.543 45.455 14.67 2.31 0.00 4.17
33 34 3.817709 TCGTCCATGTCATGATAGCAA 57.182 42.857 14.67 0.00 0.00 3.91
34 35 3.721035 CTTCGTCCATGTCATGATAGCA 58.279 45.455 14.67 0.00 0.00 3.49
35 36 2.478134 GCTTCGTCCATGTCATGATAGC 59.522 50.000 14.67 10.56 0.00 2.97
36 37 3.721035 TGCTTCGTCCATGTCATGATAG 58.279 45.455 14.67 4.93 0.00 2.08
37 38 3.817709 TGCTTCGTCCATGTCATGATA 57.182 42.857 14.67 0.00 0.00 2.15
38 39 2.696989 TGCTTCGTCCATGTCATGAT 57.303 45.000 14.67 0.00 0.00 2.45
39 40 2.470983 TTGCTTCGTCCATGTCATGA 57.529 45.000 14.67 0.00 0.00 3.07
40 41 2.941064 AGATTGCTTCGTCCATGTCATG 59.059 45.455 5.79 5.79 0.00 3.07
41 42 3.201290 GAGATTGCTTCGTCCATGTCAT 58.799 45.455 0.00 0.00 0.00 3.06
42 43 2.621338 GAGATTGCTTCGTCCATGTCA 58.379 47.619 0.00 0.00 0.00 3.58
43 44 1.936547 GGAGATTGCTTCGTCCATGTC 59.063 52.381 0.00 0.00 0.00 3.06
44 45 1.278985 TGGAGATTGCTTCGTCCATGT 59.721 47.619 0.00 0.00 34.03 3.21
45 46 1.938577 CTGGAGATTGCTTCGTCCATG 59.061 52.381 0.00 0.00 38.42 3.66
46 47 1.833630 TCTGGAGATTGCTTCGTCCAT 59.166 47.619 0.00 0.00 38.42 3.41
47 48 1.066858 GTCTGGAGATTGCTTCGTCCA 60.067 52.381 0.00 0.00 37.52 4.02
48 49 1.066858 TGTCTGGAGATTGCTTCGTCC 60.067 52.381 0.00 0.00 0.00 4.79
49 50 2.370281 TGTCTGGAGATTGCTTCGTC 57.630 50.000 0.00 0.00 0.00 4.20
50 51 3.055530 AGAATGTCTGGAGATTGCTTCGT 60.056 43.478 0.00 0.00 0.00 3.85
51 52 3.529533 AGAATGTCTGGAGATTGCTTCG 58.470 45.455 0.00 0.00 0.00 3.79
52 53 4.768583 AGAGAATGTCTGGAGATTGCTTC 58.231 43.478 0.00 0.00 32.57 3.86
53 54 4.470664 AGAGAGAATGTCTGGAGATTGCTT 59.529 41.667 0.00 0.00 37.33 3.91
54 55 4.032310 AGAGAGAATGTCTGGAGATTGCT 58.968 43.478 0.00 0.00 37.33 3.91
55 56 4.405116 AGAGAGAATGTCTGGAGATTGC 57.595 45.455 0.00 0.00 37.33 3.56
64 65 4.736168 GCGAACATAGCAGAGAGAATGTCT 60.736 45.833 0.00 0.00 40.67 3.41
65 66 3.489047 GCGAACATAGCAGAGAGAATGTC 59.511 47.826 0.00 0.00 31.53 3.06
66 67 3.452474 GCGAACATAGCAGAGAGAATGT 58.548 45.455 0.00 0.00 34.11 2.71
67 68 2.799412 GGCGAACATAGCAGAGAGAATG 59.201 50.000 0.00 0.00 36.08 2.67
68 69 2.432146 TGGCGAACATAGCAGAGAGAAT 59.568 45.455 0.00 0.00 36.08 2.40
69 70 1.824852 TGGCGAACATAGCAGAGAGAA 59.175 47.619 0.00 0.00 36.08 2.87
70 71 1.406898 CTGGCGAACATAGCAGAGAGA 59.593 52.381 0.00 0.00 36.08 3.10
71 72 1.850377 CTGGCGAACATAGCAGAGAG 58.150 55.000 0.00 0.00 36.08 3.20
72 73 0.179100 GCTGGCGAACATAGCAGAGA 60.179 55.000 0.00 0.00 37.40 3.10
73 74 1.485838 CGCTGGCGAACATAGCAGAG 61.486 60.000 9.51 0.00 42.83 3.35
74 75 1.519234 CGCTGGCGAACATAGCAGA 60.519 57.895 9.51 0.00 42.83 4.26
75 76 1.519234 TCGCTGGCGAACATAGCAG 60.519 57.895 15.38 0.00 46.01 4.24
76 77 2.576526 TCGCTGGCGAACATAGCA 59.423 55.556 15.38 0.00 46.01 3.49
89 90 0.387202 ACTCGCTCAGCAATATCGCT 59.613 50.000 0.00 0.00 45.21 4.93
90 91 1.212616 AACTCGCTCAGCAATATCGC 58.787 50.000 0.00 0.00 0.00 4.58
91 92 4.045104 ACTAAACTCGCTCAGCAATATCG 58.955 43.478 0.00 0.00 0.00 2.92
92 93 5.285651 AGACTAAACTCGCTCAGCAATATC 58.714 41.667 0.00 0.00 0.00 1.63
93 94 5.269505 AGACTAAACTCGCTCAGCAATAT 57.730 39.130 0.00 0.00 0.00 1.28
94 95 4.720649 AGACTAAACTCGCTCAGCAATA 57.279 40.909 0.00 0.00 0.00 1.90
95 96 3.601443 AGACTAAACTCGCTCAGCAAT 57.399 42.857 0.00 0.00 0.00 3.56
96 97 3.059884 CAAGACTAAACTCGCTCAGCAA 58.940 45.455 0.00 0.00 0.00 3.91
97 98 2.610479 CCAAGACTAAACTCGCTCAGCA 60.610 50.000 0.00 0.00 0.00 4.41
98 99 1.996191 CCAAGACTAAACTCGCTCAGC 59.004 52.381 0.00 0.00 0.00 4.26
99 100 2.231478 TCCCAAGACTAAACTCGCTCAG 59.769 50.000 0.00 0.00 0.00 3.35
100 101 2.244695 TCCCAAGACTAAACTCGCTCA 58.755 47.619 0.00 0.00 0.00 4.26
101 102 3.314541 TTCCCAAGACTAAACTCGCTC 57.685 47.619 0.00 0.00 0.00 5.03
102 103 3.260884 TCATTCCCAAGACTAAACTCGCT 59.739 43.478 0.00 0.00 0.00 4.93
103 104 3.371285 GTCATTCCCAAGACTAAACTCGC 59.629 47.826 0.00 0.00 0.00 5.03
104 105 4.389077 GTGTCATTCCCAAGACTAAACTCG 59.611 45.833 0.00 0.00 35.81 4.18
105 106 4.389077 CGTGTCATTCCCAAGACTAAACTC 59.611 45.833 0.00 0.00 35.81 3.01
106 107 4.202326 ACGTGTCATTCCCAAGACTAAACT 60.202 41.667 0.00 0.00 35.81 2.66
107 108 4.062991 ACGTGTCATTCCCAAGACTAAAC 58.937 43.478 0.00 0.00 35.81 2.01
108 109 4.345859 ACGTGTCATTCCCAAGACTAAA 57.654 40.909 0.00 0.00 35.81 1.85
109 110 4.039973 AGAACGTGTCATTCCCAAGACTAA 59.960 41.667 0.00 0.00 35.81 2.24
110 111 3.576982 AGAACGTGTCATTCCCAAGACTA 59.423 43.478 0.00 0.00 35.81 2.59
111 112 2.368875 AGAACGTGTCATTCCCAAGACT 59.631 45.455 0.00 0.00 35.81 3.24
112 113 2.767505 AGAACGTGTCATTCCCAAGAC 58.232 47.619 0.00 0.00 35.37 3.01
113 114 3.576982 ACTAGAACGTGTCATTCCCAAGA 59.423 43.478 0.00 0.00 0.00 3.02
114 115 3.926616 ACTAGAACGTGTCATTCCCAAG 58.073 45.455 0.00 0.00 0.00 3.61
115 116 4.345859 AACTAGAACGTGTCATTCCCAA 57.654 40.909 0.00 0.00 0.00 4.12
116 117 4.345859 AAACTAGAACGTGTCATTCCCA 57.654 40.909 0.00 0.00 0.00 4.37
117 118 5.717119 TCTAAACTAGAACGTGTCATTCCC 58.283 41.667 0.00 0.00 0.00 3.97
118 119 7.647907 TTTCTAAACTAGAACGTGTCATTCC 57.352 36.000 0.00 0.00 43.96 3.01
119 120 7.734726 CGTTTTCTAAACTAGAACGTGTCATTC 59.265 37.037 0.00 0.00 43.96 2.67
120 121 7.306983 CCGTTTTCTAAACTAGAACGTGTCATT 60.307 37.037 0.00 0.00 43.96 2.57
121 122 6.145048 CCGTTTTCTAAACTAGAACGTGTCAT 59.855 38.462 0.00 0.00 43.96 3.06
122 123 5.459762 CCGTTTTCTAAACTAGAACGTGTCA 59.540 40.000 0.00 0.00 43.96 3.58
123 124 5.687285 TCCGTTTTCTAAACTAGAACGTGTC 59.313 40.000 0.00 0.00 43.96 3.67
124 125 5.591099 TCCGTTTTCTAAACTAGAACGTGT 58.409 37.500 0.00 0.00 43.96 4.49
125 126 6.515043 TTCCGTTTTCTAAACTAGAACGTG 57.485 37.500 0.00 0.00 43.96 4.49
126 127 7.225341 ACATTTCCGTTTTCTAAACTAGAACGT 59.775 33.333 0.00 0.00 43.96 3.99
127 128 7.529519 CACATTTCCGTTTTCTAAACTAGAACG 59.470 37.037 0.00 0.00 43.96 3.95
128 129 8.553696 TCACATTTCCGTTTTCTAAACTAGAAC 58.446 33.333 0.00 0.00 43.96 3.01
129 130 8.665643 TCACATTTCCGTTTTCTAAACTAGAA 57.334 30.769 0.00 0.00 42.68 2.10
130 131 8.842358 ATCACATTTCCGTTTTCTAAACTAGA 57.158 30.769 0.00 0.00 0.00 2.43
133 134 9.673454 GTTAATCACATTTCCGTTTTCTAAACT 57.327 29.630 0.00 0.00 0.00 2.66
134 135 8.908678 GGTTAATCACATTTCCGTTTTCTAAAC 58.091 33.333 0.00 0.00 0.00 2.01
135 136 7.804129 CGGTTAATCACATTTCCGTTTTCTAAA 59.196 33.333 0.00 0.00 35.45 1.85
136 137 7.172875 TCGGTTAATCACATTTCCGTTTTCTAA 59.827 33.333 0.00 0.00 38.60 2.10
137 138 6.649973 TCGGTTAATCACATTTCCGTTTTCTA 59.350 34.615 0.00 0.00 38.60 2.10
138 139 5.470777 TCGGTTAATCACATTTCCGTTTTCT 59.529 36.000 0.00 0.00 38.60 2.52
139 140 5.691815 TCGGTTAATCACATTTCCGTTTTC 58.308 37.500 0.00 0.00 38.60 2.29
140 141 5.470777 TCTCGGTTAATCACATTTCCGTTTT 59.529 36.000 0.00 0.00 38.60 2.43
141 142 4.998672 TCTCGGTTAATCACATTTCCGTTT 59.001 37.500 0.00 0.00 38.60 3.60
142 143 4.571919 TCTCGGTTAATCACATTTCCGTT 58.428 39.130 0.00 0.00 38.60 4.44
143 144 4.181578 CTCTCGGTTAATCACATTTCCGT 58.818 43.478 0.00 0.00 38.60 4.69
144 145 3.001330 GCTCTCGGTTAATCACATTTCCG 59.999 47.826 0.00 0.00 38.73 4.30
145 146 3.938963 TGCTCTCGGTTAATCACATTTCC 59.061 43.478 0.00 0.00 0.00 3.13
146 147 5.122396 ACTTGCTCTCGGTTAATCACATTTC 59.878 40.000 0.00 0.00 0.00 2.17
147 148 5.003804 ACTTGCTCTCGGTTAATCACATTT 58.996 37.500 0.00 0.00 0.00 2.32
148 149 4.579869 ACTTGCTCTCGGTTAATCACATT 58.420 39.130 0.00 0.00 0.00 2.71
149 150 4.207891 ACTTGCTCTCGGTTAATCACAT 57.792 40.909 0.00 0.00 0.00 3.21
150 151 3.678056 ACTTGCTCTCGGTTAATCACA 57.322 42.857 0.00 0.00 0.00 3.58
151 152 4.995124 TCTACTTGCTCTCGGTTAATCAC 58.005 43.478 0.00 0.00 0.00 3.06
152 153 4.705507 ACTCTACTTGCTCTCGGTTAATCA 59.294 41.667 0.00 0.00 0.00 2.57
153 154 5.251601 ACTCTACTTGCTCTCGGTTAATC 57.748 43.478 0.00 0.00 0.00 1.75
154 155 5.662674 AACTCTACTTGCTCTCGGTTAAT 57.337 39.130 0.00 0.00 0.00 1.40
155 156 5.010314 TCAAACTCTACTTGCTCTCGGTTAA 59.990 40.000 0.00 0.00 0.00 2.01
156 157 4.521639 TCAAACTCTACTTGCTCTCGGTTA 59.478 41.667 0.00 0.00 0.00 2.85
157 158 3.321111 TCAAACTCTACTTGCTCTCGGTT 59.679 43.478 0.00 0.00 0.00 4.44
158 159 2.891580 TCAAACTCTACTTGCTCTCGGT 59.108 45.455 0.00 0.00 0.00 4.69
159 160 3.577649 TCAAACTCTACTTGCTCTCGG 57.422 47.619 0.00 0.00 0.00 4.63
160 161 4.738124 TGATCAAACTCTACTTGCTCTCG 58.262 43.478 0.00 0.00 0.00 4.04
161 162 7.332926 TGATTTGATCAAACTCTACTTGCTCTC 59.667 37.037 22.71 11.82 36.11 3.20
162 163 7.118971 GTGATTTGATCAAACTCTACTTGCTCT 59.881 37.037 22.71 2.47 41.69 4.09
163 164 7.239972 GTGATTTGATCAAACTCTACTTGCTC 58.760 38.462 22.71 12.47 41.69 4.26
164 165 6.150140 GGTGATTTGATCAAACTCTACTTGCT 59.850 38.462 22.71 3.21 41.69 3.91
165 166 6.072508 TGGTGATTTGATCAAACTCTACTTGC 60.073 38.462 22.71 7.91 41.69 4.01
166 167 7.439157 TGGTGATTTGATCAAACTCTACTTG 57.561 36.000 22.71 0.00 41.69 3.16
167 168 7.721399 ACTTGGTGATTTGATCAAACTCTACTT 59.279 33.333 22.71 5.47 41.69 2.24
168 169 7.173907 CACTTGGTGATTTGATCAAACTCTACT 59.826 37.037 22.71 6.23 41.69 2.57
169 170 7.301054 CACTTGGTGATTTGATCAAACTCTAC 58.699 38.462 22.71 17.01 41.69 2.59
170 171 6.430925 CCACTTGGTGATTTGATCAAACTCTA 59.569 38.462 22.71 12.20 41.69 2.43
171 172 5.242393 CCACTTGGTGATTTGATCAAACTCT 59.758 40.000 22.71 7.76 41.69 3.24
172 173 5.464168 CCACTTGGTGATTTGATCAAACTC 58.536 41.667 22.71 19.18 41.69 3.01
173 174 4.281688 CCCACTTGGTGATTTGATCAAACT 59.718 41.667 22.71 12.08 41.69 2.66
174 175 4.559153 CCCACTTGGTGATTTGATCAAAC 58.441 43.478 22.71 16.11 41.69 2.93
175 176 4.870123 CCCACTTGGTGATTTGATCAAA 57.130 40.909 22.52 22.52 41.69 2.69
210 211 2.043953 GATGCAACCCACTCCCCC 60.044 66.667 0.00 0.00 0.00 5.40
211 212 1.678970 GTGATGCAACCCACTCCCC 60.679 63.158 9.21 0.00 0.00 4.81
212 213 1.678970 GGTGATGCAACCCACTCCC 60.679 63.158 14.19 0.00 33.79 4.30
213 214 0.251341 AAGGTGATGCAACCCACTCC 60.251 55.000 14.19 4.87 41.54 3.85
214 215 1.620822 AAAGGTGATGCAACCCACTC 58.379 50.000 14.19 7.16 41.54 3.51
215 216 2.969821 TAAAGGTGATGCAACCCACT 57.030 45.000 14.19 0.00 41.54 4.00
216 217 4.494484 GAATTAAAGGTGATGCAACCCAC 58.506 43.478 3.86 6.36 41.54 4.61
217 218 3.513515 GGAATTAAAGGTGATGCAACCCA 59.486 43.478 3.86 0.00 41.54 4.51
218 219 3.769300 AGGAATTAAAGGTGATGCAACCC 59.231 43.478 3.86 0.00 41.54 4.11
219 220 5.652452 AGTAGGAATTAAAGGTGATGCAACC 59.348 40.000 0.00 0.00 40.85 3.77
220 221 6.759497 AGTAGGAATTAAAGGTGATGCAAC 57.241 37.500 0.00 0.00 0.00 4.17
222 223 9.944376 GATATAGTAGGAATTAAAGGTGATGCA 57.056 33.333 0.00 0.00 0.00 3.96
223 224 9.944376 TGATATAGTAGGAATTAAAGGTGATGC 57.056 33.333 0.00 0.00 0.00 3.91
294 295 9.953697 ATGACGTTCTTTATTCTATCTCAGTAC 57.046 33.333 0.00 0.00 0.00 2.73
303 304 9.817809 ATGAGCTTAATGACGTTCTTTATTCTA 57.182 29.630 0.00 0.00 0.00 2.10
311 312 6.820656 AGAAATGATGAGCTTAATGACGTTCT 59.179 34.615 0.00 0.00 0.00 3.01
327 328 4.976224 TGATGTCAAGCCAGAAATGATG 57.024 40.909 0.00 0.00 0.00 3.07
328 329 5.623824 GCTTTGATGTCAAGCCAGAAATGAT 60.624 40.000 0.00 0.00 37.15 2.45
329 330 4.321452 GCTTTGATGTCAAGCCAGAAATGA 60.321 41.667 0.00 0.00 37.15 2.57
330 331 3.924686 GCTTTGATGTCAAGCCAGAAATG 59.075 43.478 0.00 0.00 37.15 2.32
331 332 3.056322 GGCTTTGATGTCAAGCCAGAAAT 60.056 43.478 17.06 0.00 43.35 2.17
332 333 2.297033 GGCTTTGATGTCAAGCCAGAAA 59.703 45.455 17.06 0.00 43.35 2.52
333 334 1.888512 GGCTTTGATGTCAAGCCAGAA 59.111 47.619 17.06 0.00 43.35 3.02
334 335 1.202915 TGGCTTTGATGTCAAGCCAGA 60.203 47.619 20.03 1.38 45.77 3.86
335 336 1.250328 TGGCTTTGATGTCAAGCCAG 58.750 50.000 20.03 10.13 45.77 4.85
337 338 2.028748 ACAATGGCTTTGATGTCAAGCC 60.029 45.455 18.73 15.46 43.74 4.35
338 339 2.991190 CACAATGGCTTTGATGTCAAGC 59.009 45.455 18.73 0.00 38.76 4.01
339 340 3.581755 CCACAATGGCTTTGATGTCAAG 58.418 45.455 18.73 1.49 38.76 3.02
340 341 3.663995 CCACAATGGCTTTGATGTCAA 57.336 42.857 18.73 0.00 38.76 3.18
365 366 0.615331 ACGAGGATTGGATGTGCTGT 59.385 50.000 0.00 0.00 0.00 4.40
402 403 2.125773 AATTGGAGCTGAGCAAGGAG 57.874 50.000 7.39 0.00 0.00 3.69
526 527 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
527 528 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
528 529 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
529 530 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
530 531 9.080097 TCTCCCTCTGTAAACTAATATAAGAGC 57.920 37.037 0.00 0.00 0.00 4.09
534 535 9.998106 GCATTCTCCCTCTGTAAACTAATATAA 57.002 33.333 0.00 0.00 0.00 0.98
535 536 8.594550 GGCATTCTCCCTCTGTAAACTAATATA 58.405 37.037 0.00 0.00 0.00 0.86
536 537 7.072454 TGGCATTCTCCCTCTGTAAACTAATAT 59.928 37.037 0.00 0.00 0.00 1.28
537 538 6.385759 TGGCATTCTCCCTCTGTAAACTAATA 59.614 38.462 0.00 0.00 0.00 0.98
538 539 5.191722 TGGCATTCTCCCTCTGTAAACTAAT 59.808 40.000 0.00 0.00 0.00 1.73
539 540 4.534500 TGGCATTCTCCCTCTGTAAACTAA 59.466 41.667 0.00 0.00 0.00 2.24
540 541 4.101114 TGGCATTCTCCCTCTGTAAACTA 58.899 43.478 0.00 0.00 0.00 2.24
541 542 2.912956 TGGCATTCTCCCTCTGTAAACT 59.087 45.455 0.00 0.00 0.00 2.66
542 543 3.350219 TGGCATTCTCCCTCTGTAAAC 57.650 47.619 0.00 0.00 0.00 2.01
543 544 4.228210 AGAATGGCATTCTCCCTCTGTAAA 59.772 41.667 31.80 0.00 46.17 2.01
544 545 3.782523 AGAATGGCATTCTCCCTCTGTAA 59.217 43.478 31.80 0.00 46.17 2.41
545 546 3.387962 AGAATGGCATTCTCCCTCTGTA 58.612 45.455 31.80 0.00 46.17 2.74
546 547 2.203584 AGAATGGCATTCTCCCTCTGT 58.796 47.619 31.80 11.97 46.17 3.41
555 556 4.996788 ATGGAGTTGAAGAATGGCATTC 57.003 40.909 28.54 28.54 39.56 2.67
556 557 6.040166 GTGATATGGAGTTGAAGAATGGCATT 59.960 38.462 13.54 13.54 0.00 3.56
557 558 5.533903 GTGATATGGAGTTGAAGAATGGCAT 59.466 40.000 0.00 0.00 0.00 4.40
560 561 5.688807 AGGTGATATGGAGTTGAAGAATGG 58.311 41.667 0.00 0.00 0.00 3.16
574 576 4.202388 TGGTGACATGATGGAGGTGATATG 60.202 45.833 0.00 0.00 33.40 1.78
604 606 4.552355 CTTCACGGACTAACATGTGTGTA 58.448 43.478 0.00 0.00 37.67 2.90
606 608 2.157668 GCTTCACGGACTAACATGTGTG 59.842 50.000 0.00 1.88 34.08 3.82
607 609 2.413837 GCTTCACGGACTAACATGTGT 58.586 47.619 0.00 0.00 34.08 3.72
608 610 1.732259 GGCTTCACGGACTAACATGTG 59.268 52.381 0.00 0.00 0.00 3.21
609 611 1.671850 CGGCTTCACGGACTAACATGT 60.672 52.381 0.00 0.00 0.00 3.21
610 612 0.999406 CGGCTTCACGGACTAACATG 59.001 55.000 0.00 0.00 0.00 3.21
617 619 3.119096 GCCTTCGGCTTCACGGAC 61.119 66.667 0.00 0.00 46.69 4.79
647 649 2.169832 ATCCTGGTTAATGATCGCCG 57.830 50.000 0.00 0.00 0.00 6.46
651 653 7.156876 TGTTGTTCAATCCTGGTTAATGATC 57.843 36.000 0.00 0.00 0.00 2.92
657 659 4.141135 TCCCTTGTTGTTCAATCCTGGTTA 60.141 41.667 0.00 0.00 35.35 2.85
691 693 6.405278 AAAATGGTCCCTTTAACACTGAAG 57.595 37.500 0.00 0.00 0.00 3.02
723 726 6.436843 AAGCCCGAGTACAAAAGAATAATG 57.563 37.500 0.00 0.00 0.00 1.90
751 754 1.474077 CCCTGAGCATAAACTGGTTGC 59.526 52.381 0.00 0.00 35.19 4.17
777 780 7.969536 AAATACAGTACCATGATGAGCATAC 57.030 36.000 0.00 0.00 34.82 2.39
867 3996 2.278332 AACCAGGAAGAAAGCAGGAC 57.722 50.000 0.00 0.00 0.00 3.85
907 4051 3.733344 CGGTGGCCGGTGGATACAG 62.733 68.421 1.90 0.00 43.71 2.74
908 4052 3.776781 CGGTGGCCGGTGGATACA 61.777 66.667 1.90 0.00 44.87 2.29
994 4138 7.597369 GTGGTGAAAATATAAAGGTGGTGTTTC 59.403 37.037 0.00 0.00 0.00 2.78
1216 4360 1.374252 GTAGGTCCAGTGCACCGTG 60.374 63.158 14.63 6.13 39.13 4.94
1727 4875 2.325583 AGGTGTTTGCTTTCGACTCA 57.674 45.000 0.00 0.00 0.00 3.41
1728 4876 4.142881 GGATAAGGTGTTTGCTTTCGACTC 60.143 45.833 0.00 0.00 0.00 3.36
1729 4877 3.751698 GGATAAGGTGTTTGCTTTCGACT 59.248 43.478 0.00 0.00 0.00 4.18
1780 4945 2.749621 GGACACCATGGATCTGAACAAC 59.250 50.000 21.47 0.00 0.00 3.32
1781 4952 2.644299 AGGACACCATGGATCTGAACAA 59.356 45.455 21.47 0.00 0.00 2.83
1798 4969 3.112709 GCTCACGGCGTTGAGGAC 61.113 66.667 27.91 16.03 42.95 3.85
2093 5269 5.459110 TGAACGAAATTTAGCATCGGTAC 57.541 39.130 0.00 0.00 36.49 3.34
2135 5312 1.180029 CCTCAGGAACAGGGCAAATG 58.820 55.000 0.00 0.00 0.00 2.32
2142 5319 2.581354 CTCGGCCTCAGGAACAGG 59.419 66.667 0.00 0.00 0.00 4.00
2236 5413 2.426024 CCATGCCCTTGAAGATGTTGAG 59.574 50.000 0.00 0.00 0.00 3.02
2259 5436 3.746949 CTGCTCCACGCCCAGGATC 62.747 68.421 0.00 0.00 38.05 3.36
2429 5606 2.480853 CTACTACACGGTGTGCGGCA 62.481 60.000 23.36 0.00 36.98 5.69
2462 5643 4.610905 GCCAGATCTCAGTACGTACGTATG 60.611 50.000 29.05 24.58 32.82 2.39
2492 5673 2.867624 ACACACAGCAAGAATGGATGT 58.132 42.857 0.00 0.00 0.00 3.06
2527 5708 1.657181 CGCGCCAAAACCACAAGAC 60.657 57.895 0.00 0.00 0.00 3.01
2982 6165 2.035832 GCTAATGGAGGAGAGTCAGAGC 59.964 54.545 0.00 0.00 0.00 4.09
2986 6169 3.215151 CGTAGCTAATGGAGGAGAGTCA 58.785 50.000 0.00 0.00 0.00 3.41
3078 6435 5.971202 CCTAAATTTGCATTTCGCGATAGTT 59.029 36.000 10.88 0.00 46.97 2.24
3176 9246 2.729467 CGACCGAGACTTAGCAAGACTG 60.729 54.545 5.85 0.00 33.75 3.51
3177 9247 1.469308 CGACCGAGACTTAGCAAGACT 59.531 52.381 3.37 2.60 36.25 3.24
3178 9248 1.467734 TCGACCGAGACTTAGCAAGAC 59.532 52.381 3.37 0.00 0.00 3.01
3179 9249 1.817357 TCGACCGAGACTTAGCAAGA 58.183 50.000 3.37 0.00 0.00 3.02
3180 9250 2.455032 CATCGACCGAGACTTAGCAAG 58.545 52.381 0.00 0.00 0.00 4.01
3181 9251 1.469251 GCATCGACCGAGACTTAGCAA 60.469 52.381 0.00 0.00 0.00 3.91
3182 9252 0.100682 GCATCGACCGAGACTTAGCA 59.899 55.000 0.00 0.00 0.00 3.49
3183 9253 0.382515 AGCATCGACCGAGACTTAGC 59.617 55.000 0.00 0.00 0.00 3.09
3184 9254 5.804692 ATATAGCATCGACCGAGACTTAG 57.195 43.478 0.00 0.00 0.00 2.18
3185 9255 5.704053 TGAATATAGCATCGACCGAGACTTA 59.296 40.000 0.00 0.00 0.00 2.24
3186 9256 4.519350 TGAATATAGCATCGACCGAGACTT 59.481 41.667 0.00 0.00 0.00 3.01
3187 9257 4.072839 TGAATATAGCATCGACCGAGACT 58.927 43.478 0.00 0.76 0.00 3.24
3188 9258 4.421033 TGAATATAGCATCGACCGAGAC 57.579 45.455 0.00 0.00 0.00 3.36
3189 9259 6.598064 TCTTATGAATATAGCATCGACCGAGA 59.402 38.462 0.00 0.00 0.00 4.04
3190 9260 6.786207 TCTTATGAATATAGCATCGACCGAG 58.214 40.000 0.00 0.00 0.00 4.63
3191 9261 6.753107 TCTTATGAATATAGCATCGACCGA 57.247 37.500 0.00 0.00 0.00 4.69
3192 9262 7.993821 AATCTTATGAATATAGCATCGACCG 57.006 36.000 0.00 0.00 0.00 4.79
3211 9281 9.947433 TTTGCATGGATCTCAAAATAAAATCTT 57.053 25.926 0.00 0.00 0.00 2.40
3259 9329 9.554395 TCAAGTGACATAACATGTAAGAGAAAA 57.446 29.630 0.00 0.00 45.03 2.29
3260 9330 8.988934 GTCAAGTGACATAACATGTAAGAGAAA 58.011 33.333 0.00 0.00 45.03 2.52
3261 9331 8.534333 GTCAAGTGACATAACATGTAAGAGAA 57.466 34.615 0.00 0.00 45.03 2.87
3277 9347 3.460857 ACCAAGTCTCAGTCAAGTGAC 57.539 47.619 3.12 3.12 45.08 3.67
3278 9348 5.607939 TTAACCAAGTCTCAGTCAAGTGA 57.392 39.130 0.00 0.00 0.00 3.41
3279 9349 6.073003 GGATTTAACCAAGTCTCAGTCAAGTG 60.073 42.308 0.00 0.00 0.00 3.16
3280 9350 5.998363 GGATTTAACCAAGTCTCAGTCAAGT 59.002 40.000 0.00 0.00 0.00 3.16
3281 9351 5.412904 GGGATTTAACCAAGTCTCAGTCAAG 59.587 44.000 0.00 0.00 0.00 3.02
3282 9352 5.163141 TGGGATTTAACCAAGTCTCAGTCAA 60.163 40.000 0.00 0.00 34.44 3.18
3283 9353 4.349636 TGGGATTTAACCAAGTCTCAGTCA 59.650 41.667 0.00 0.00 34.44 3.41
3284 9354 4.906618 TGGGATTTAACCAAGTCTCAGTC 58.093 43.478 0.00 0.00 34.44 3.51
3285 9355 4.911390 CTGGGATTTAACCAAGTCTCAGT 58.089 43.478 2.54 0.00 41.67 3.41
3287 9357 4.993705 ACTGGGATTTAACCAAGTCTCA 57.006 40.909 0.00 0.00 39.80 3.27
3291 9361 3.326880 AGTCGACTGGGATTTAACCAAGT 59.673 43.478 19.30 0.00 45.83 3.16
3292 9362 3.684788 CAGTCGACTGGGATTTAACCAAG 59.315 47.826 33.36 6.53 40.20 3.61
3293 9363 3.325425 TCAGTCGACTGGGATTTAACCAA 59.675 43.478 37.82 16.73 43.91 3.67
3294 9364 2.901192 TCAGTCGACTGGGATTTAACCA 59.099 45.455 37.82 17.22 43.91 3.67
3295 9365 3.604875 TCAGTCGACTGGGATTTAACC 57.395 47.619 37.82 0.00 43.91 2.85
3303 9373 1.384525 CTAGGTCTCAGTCGACTGGG 58.615 60.000 37.82 36.48 45.72 4.45
3304 9374 0.736053 GCTAGGTCTCAGTCGACTGG 59.264 60.000 37.82 28.95 43.91 4.00
3305 9375 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
3306 9376 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
3307 9377 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
3308 9378 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
3309 9379 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
3310 9380 0.533032 GGTGTGGCTAGGTCTCAGTC 59.467 60.000 0.00 0.00 0.00 3.51
3311 9381 0.115349 AGGTGTGGCTAGGTCTCAGT 59.885 55.000 0.00 0.00 0.00 3.41
3312 9382 1.270907 AAGGTGTGGCTAGGTCTCAG 58.729 55.000 0.00 0.00 0.00 3.35
3313 9383 1.729586 AAAGGTGTGGCTAGGTCTCA 58.270 50.000 0.00 0.00 0.00 3.27
3314 9384 2.861147 AAAAGGTGTGGCTAGGTCTC 57.139 50.000 0.00 0.00 0.00 3.36
3315 9385 3.844211 TGATAAAAGGTGTGGCTAGGTCT 59.156 43.478 0.00 0.00 0.00 3.85
3316 9386 4.192317 CTGATAAAAGGTGTGGCTAGGTC 58.808 47.826 0.00 0.00 0.00 3.85
3317 9387 3.587506 ACTGATAAAAGGTGTGGCTAGGT 59.412 43.478 0.00 0.00 0.00 3.08
3318 9388 3.941483 CACTGATAAAAGGTGTGGCTAGG 59.059 47.826 0.00 0.00 0.00 3.02
3319 9389 4.579869 ACACTGATAAAAGGTGTGGCTAG 58.420 43.478 0.00 0.00 41.75 3.42
3320 9390 4.575885 GACACTGATAAAAGGTGTGGCTA 58.424 43.478 2.66 0.00 43.08 3.93
3321 9391 3.412386 GACACTGATAAAAGGTGTGGCT 58.588 45.455 2.66 0.00 43.08 4.75
3322 9392 2.159627 CGACACTGATAAAAGGTGTGGC 59.840 50.000 2.66 0.00 43.08 5.01
3323 9393 3.659786 TCGACACTGATAAAAGGTGTGG 58.340 45.455 2.66 2.33 43.08 4.17
3324 9394 4.750098 AGTTCGACACTGATAAAAGGTGTG 59.250 41.667 2.66 0.00 43.08 3.82
3325 9395 4.957296 AGTTCGACACTGATAAAAGGTGT 58.043 39.130 0.00 0.00 45.26 4.16
3326 9396 4.988540 TGAGTTCGACACTGATAAAAGGTG 59.011 41.667 5.20 0.00 35.01 4.00
3327 9397 5.209818 TGAGTTCGACACTGATAAAAGGT 57.790 39.130 5.20 0.00 35.01 3.50
3328 9398 5.119279 CACTGAGTTCGACACTGATAAAAGG 59.881 44.000 5.20 0.00 35.01 3.11
3329 9399 5.692204 ACACTGAGTTCGACACTGATAAAAG 59.308 40.000 5.20 0.00 35.01 2.27
3330 9400 5.462068 CACACTGAGTTCGACACTGATAAAA 59.538 40.000 5.20 0.00 35.01 1.52
3331 9401 4.982295 CACACTGAGTTCGACACTGATAAA 59.018 41.667 5.20 0.00 35.01 1.40
3332 9402 4.546570 CACACTGAGTTCGACACTGATAA 58.453 43.478 5.20 0.00 35.01 1.75
3333 9403 3.057526 CCACACTGAGTTCGACACTGATA 60.058 47.826 5.20 0.00 35.01 2.15
3334 9404 2.288457 CCACACTGAGTTCGACACTGAT 60.288 50.000 5.20 0.00 35.01 2.90
3335 9405 1.067060 CCACACTGAGTTCGACACTGA 59.933 52.381 5.20 0.00 35.01 3.41
3336 9406 1.491670 CCACACTGAGTTCGACACTG 58.508 55.000 5.20 0.00 35.01 3.66
3389 9459 0.739462 GCGGACGTGATGATCAACCA 60.739 55.000 0.00 0.00 0.00 3.67
3390 9460 0.739462 TGCGGACGTGATGATCAACC 60.739 55.000 0.00 0.72 0.00 3.77
3451 9521 3.902063 CGAGCACGCAACGGATCG 61.902 66.667 0.00 2.81 0.00 3.69
3484 9554 6.293845 CCAACCATGTAGGAGTACGTAGATAC 60.294 46.154 0.00 0.00 41.22 2.24
3496 9566 3.904965 TGTACTTCACCAACCATGTAGGA 59.095 43.478 0.00 0.00 41.22 2.94
3497 9567 4.280436 TGTACTTCACCAACCATGTAGG 57.720 45.455 0.00 0.00 45.67 3.18
3498 9568 5.333798 CGTTTGTACTTCACCAACCATGTAG 60.334 44.000 0.00 0.00 30.73 2.74
3500 9570 3.314080 CGTTTGTACTTCACCAACCATGT 59.686 43.478 0.00 0.00 30.73 3.21
3501 9571 3.562141 TCGTTTGTACTTCACCAACCATG 59.438 43.478 0.00 0.00 30.73 3.66
3502 9572 3.811083 TCGTTTGTACTTCACCAACCAT 58.189 40.909 0.00 0.00 30.73 3.55
3537 9607 4.944930 TGTCTTCGGTTTCTCTTCCAAAAA 59.055 37.500 0.00 0.00 0.00 1.94
3538 9608 4.519213 TGTCTTCGGTTTCTCTTCCAAAA 58.481 39.130 0.00 0.00 0.00 2.44
3539 9609 4.127171 CTGTCTTCGGTTTCTCTTCCAAA 58.873 43.478 0.00 0.00 0.00 3.28
3540 9610 3.386726 TCTGTCTTCGGTTTCTCTTCCAA 59.613 43.478 0.00 0.00 0.00 3.53
3541 9611 2.963101 TCTGTCTTCGGTTTCTCTTCCA 59.037 45.455 0.00 0.00 0.00 3.53
3542 9612 3.662247 TCTGTCTTCGGTTTCTCTTCC 57.338 47.619 0.00 0.00 0.00 3.46
3543 9613 5.751028 CCATATCTGTCTTCGGTTTCTCTTC 59.249 44.000 0.00 0.00 0.00 2.87
3544 9614 5.395768 CCCATATCTGTCTTCGGTTTCTCTT 60.396 44.000 0.00 0.00 0.00 2.85
3545 9615 4.100189 CCCATATCTGTCTTCGGTTTCTCT 59.900 45.833 0.00 0.00 0.00 3.10
3546 9616 4.099573 TCCCATATCTGTCTTCGGTTTCTC 59.900 45.833 0.00 0.00 0.00 2.87
3547 9617 4.030913 TCCCATATCTGTCTTCGGTTTCT 58.969 43.478 0.00 0.00 0.00 2.52
3548 9618 4.402056 TCCCATATCTGTCTTCGGTTTC 57.598 45.455 0.00 0.00 0.00 2.78
3549 9619 4.514401 GTTCCCATATCTGTCTTCGGTTT 58.486 43.478 0.00 0.00 0.00 3.27
3550 9620 3.430374 CGTTCCCATATCTGTCTTCGGTT 60.430 47.826 0.00 0.00 0.00 4.44
3551 9621 2.100916 CGTTCCCATATCTGTCTTCGGT 59.899 50.000 0.00 0.00 0.00 4.69
3552 9622 2.743938 CGTTCCCATATCTGTCTTCGG 58.256 52.381 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.