Multiple sequence alignment - TraesCS5A01G278700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G278700 chr5A 100.000 2270 0 0 1 2270 488009874 488007605 0.000000e+00 4193
1 TraesCS5A01G278700 chr5A 81.572 1552 126 77 795 2270 487985127 487983660 0.000000e+00 1134
2 TraesCS5A01G278700 chr5A 88.014 559 49 13 1700 2249 487940252 487939703 0.000000e+00 645
3 TraesCS5A01G278700 chr5A 87.500 488 31 14 882 1340 487925069 487924583 9.230000e-149 536
4 TraesCS5A01G278700 chr5A 94.253 348 16 3 992 1336 487918654 487918308 1.540000e-146 529
5 TraesCS5A01G278700 chr5A 85.870 460 45 11 1794 2248 487918171 487917727 2.640000e-129 472
6 TraesCS5A01G278700 chr5A 86.667 285 28 2 690 974 487918974 487918700 7.880000e-80 307
7 TraesCS5A01G278700 chr5A 89.848 197 17 2 2074 2270 487924112 487923919 1.350000e-62 250
8 TraesCS5A01G278700 chr5A 81.633 245 37 5 95 333 2393410 2393652 1.780000e-46 196
9 TraesCS5A01G278700 chr5A 86.982 169 18 2 700 864 487941128 487940960 1.070000e-43 187
10 TraesCS5A01G278700 chr5B 94.708 1644 52 11 625 2254 463945460 463943838 0.000000e+00 2521
11 TraesCS5A01G278700 chr5B 86.043 652 53 21 725 1340 463918993 463918344 0.000000e+00 665
12 TraesCS5A01G278700 chr5B 85.832 607 36 14 764 1340 463937968 463937382 1.160000e-167 599
13 TraesCS5A01G278700 chr5B 89.144 479 41 8 1794 2270 463918210 463917741 9.030000e-164 586
14 TraesCS5A01G278700 chr5B 89.831 472 22 12 888 1340 463912520 463912056 1.170000e-162 582
15 TraesCS5A01G278700 chr5B 88.767 454 44 5 1816 2268 463937376 463936929 1.190000e-152 549
16 TraesCS5A01G278700 chr5B 84.661 502 42 14 1762 2246 463911922 463911439 3.410000e-128 468
17 TraesCS5A01G278700 chr5D 93.273 1665 57 19 625 2270 386067765 386066137 0.000000e+00 2403
18 TraesCS5A01G278700 chr5D 83.316 989 69 32 1335 2270 386057733 386056788 0.000000e+00 824
19 TraesCS5A01G278700 chr5D 89.241 632 31 8 725 1340 386036128 386035518 0.000000e+00 756
20 TraesCS5A01G278700 chr5D 89.081 577 36 11 764 1321 386058353 386057785 0.000000e+00 691
21 TraesCS5A01G278700 chr5D 87.931 580 31 14 764 1316 386046328 386045761 0.000000e+00 647
22 TraesCS5A01G278700 chr5D 94.901 353 13 3 992 1340 385978542 385978191 4.260000e-152 547
23 TraesCS5A01G278700 chr5D 91.159 328 25 3 1924 2248 386035243 386034917 2.070000e-120 442
24 TraesCS5A01G278700 chr5D 92.607 257 16 2 333 588 202399342 202399596 1.280000e-97 366
25 TraesCS5A01G278700 chr5D 91.923 260 19 1 337 596 279292871 279293128 1.660000e-96 363
26 TraesCS5A01G278700 chr5D 84.985 333 48 2 6 338 243090257 243090587 1.000000e-88 337
27 TraesCS5A01G278700 chr1D 92.105 266 17 3 335 599 445988188 445987926 2.750000e-99 372
28 TraesCS5A01G278700 chr1D 91.829 257 18 2 335 590 365984332 365984078 2.770000e-94 355
29 TraesCS5A01G278700 chr2D 92.337 261 17 2 330 589 558801627 558801369 3.560000e-98 368
30 TraesCS5A01G278700 chr2D 91.255 263 20 2 335 597 395940457 395940198 2.770000e-94 355
31 TraesCS5A01G278700 chr4A 91.288 264 21 1 336 599 674617055 674616794 2.140000e-95 359
32 TraesCS5A01G278700 chr3A 92.188 256 17 2 336 590 739916700 739916953 2.140000e-95 359
33 TraesCS5A01G278700 chr6B 91.571 261 18 3 343 603 536831426 536831170 7.710000e-95 357
34 TraesCS5A01G278700 chr6B 79.389 262 43 9 86 337 42740166 42740426 8.330000e-40 174
35 TraesCS5A01G278700 chr4D 75.921 353 53 27 2 337 131772011 131771674 3.910000e-33 152
36 TraesCS5A01G278700 chr4B 82.530 166 29 0 172 337 166682277 166682442 1.820000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G278700 chr5A 488007605 488009874 2269 True 4193.0 4193 100.0000 1 2270 1 chr5A.!!$R2 2269
1 TraesCS5A01G278700 chr5A 487983660 487985127 1467 True 1134.0 1134 81.5720 795 2270 1 chr5A.!!$R1 1475
2 TraesCS5A01G278700 chr5A 487917727 487918974 1247 True 436.0 529 88.9300 690 2248 3 chr5A.!!$R3 1558
3 TraesCS5A01G278700 chr5A 487939703 487941128 1425 True 416.0 645 87.4980 700 2249 2 chr5A.!!$R5 1549
4 TraesCS5A01G278700 chr5A 487923919 487925069 1150 True 393.0 536 88.6740 882 2270 2 chr5A.!!$R4 1388
5 TraesCS5A01G278700 chr5B 463943838 463945460 1622 True 2521.0 2521 94.7080 625 2254 1 chr5B.!!$R1 1629
6 TraesCS5A01G278700 chr5B 463917741 463918993 1252 True 625.5 665 87.5935 725 2270 2 chr5B.!!$R3 1545
7 TraesCS5A01G278700 chr5B 463936929 463937968 1039 True 574.0 599 87.2995 764 2268 2 chr5B.!!$R4 1504
8 TraesCS5A01G278700 chr5B 463911439 463912520 1081 True 525.0 582 87.2460 888 2246 2 chr5B.!!$R2 1358
9 TraesCS5A01G278700 chr5D 386066137 386067765 1628 True 2403.0 2403 93.2730 625 2270 1 chr5D.!!$R3 1645
10 TraesCS5A01G278700 chr5D 386056788 386058353 1565 True 757.5 824 86.1985 764 2270 2 chr5D.!!$R5 1506
11 TraesCS5A01G278700 chr5D 386045761 386046328 567 True 647.0 647 87.9310 764 1316 1 chr5D.!!$R2 552
12 TraesCS5A01G278700 chr5D 386034917 386036128 1211 True 599.0 756 90.2000 725 2248 2 chr5D.!!$R4 1523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.033894 GGCCCGAGGATAACCCAAAA 60.034 55.0 0.0 0.0 37.41 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1810 0.89553 CAGGGACGCAGGAACTCTAA 59.104 55.0 0.0 0.0 34.6 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.808945 CAGGCAATGAGAGTCACAACC 59.191 52.381 0.00 0.00 0.00 3.77
21 22 1.421268 AGGCAATGAGAGTCACAACCA 59.579 47.619 9.28 0.00 0.00 3.67
22 23 2.158623 AGGCAATGAGAGTCACAACCAA 60.159 45.455 9.28 0.00 0.00 3.67
23 24 2.227388 GGCAATGAGAGTCACAACCAAG 59.773 50.000 0.00 0.00 0.00 3.61
24 25 2.351157 GCAATGAGAGTCACAACCAAGC 60.351 50.000 0.00 0.00 0.00 4.01
25 26 2.191128 ATGAGAGTCACAACCAAGCC 57.809 50.000 0.00 0.00 0.00 4.35
26 27 0.836606 TGAGAGTCACAACCAAGCCA 59.163 50.000 0.00 0.00 0.00 4.75
27 28 1.211703 TGAGAGTCACAACCAAGCCAA 59.788 47.619 0.00 0.00 0.00 4.52
28 29 2.297701 GAGAGTCACAACCAAGCCAAA 58.702 47.619 0.00 0.00 0.00 3.28
29 30 2.024414 AGAGTCACAACCAAGCCAAAC 58.976 47.619 0.00 0.00 0.00 2.93
30 31 1.067060 GAGTCACAACCAAGCCAAACC 59.933 52.381 0.00 0.00 0.00 3.27
31 32 0.820871 GTCACAACCAAGCCAAACCA 59.179 50.000 0.00 0.00 0.00 3.67
32 33 1.412343 GTCACAACCAAGCCAAACCAT 59.588 47.619 0.00 0.00 0.00 3.55
33 34 2.625790 GTCACAACCAAGCCAAACCATA 59.374 45.455 0.00 0.00 0.00 2.74
34 35 2.625790 TCACAACCAAGCCAAACCATAC 59.374 45.455 0.00 0.00 0.00 2.39
35 36 2.363680 CACAACCAAGCCAAACCATACA 59.636 45.455 0.00 0.00 0.00 2.29
36 37 3.034635 ACAACCAAGCCAAACCATACAA 58.965 40.909 0.00 0.00 0.00 2.41
37 38 3.181470 ACAACCAAGCCAAACCATACAAC 60.181 43.478 0.00 0.00 0.00 3.32
38 39 2.672098 ACCAAGCCAAACCATACAACA 58.328 42.857 0.00 0.00 0.00 3.33
39 40 3.034635 ACCAAGCCAAACCATACAACAA 58.965 40.909 0.00 0.00 0.00 2.83
40 41 3.181470 ACCAAGCCAAACCATACAACAAC 60.181 43.478 0.00 0.00 0.00 3.32
41 42 3.181471 CCAAGCCAAACCATACAACAACA 60.181 43.478 0.00 0.00 0.00 3.33
42 43 4.050553 CAAGCCAAACCATACAACAACAG 58.949 43.478 0.00 0.00 0.00 3.16
43 44 3.295973 AGCCAAACCATACAACAACAGT 58.704 40.909 0.00 0.00 0.00 3.55
44 45 4.465886 AGCCAAACCATACAACAACAGTA 58.534 39.130 0.00 0.00 0.00 2.74
45 46 5.076873 AGCCAAACCATACAACAACAGTAT 58.923 37.500 0.00 0.00 32.62 2.12
46 47 5.538433 AGCCAAACCATACAACAACAGTATT 59.462 36.000 0.00 0.00 30.08 1.89
47 48 6.717540 AGCCAAACCATACAACAACAGTATTA 59.282 34.615 0.00 0.00 30.08 0.98
48 49 7.231722 AGCCAAACCATACAACAACAGTATTAA 59.768 33.333 0.00 0.00 30.08 1.40
49 50 7.327518 GCCAAACCATACAACAACAGTATTAAC 59.672 37.037 0.00 0.00 30.08 2.01
50 51 7.810759 CCAAACCATACAACAACAGTATTAACC 59.189 37.037 0.00 0.00 30.08 2.85
51 52 7.457024 AACCATACAACAACAGTATTAACCC 57.543 36.000 0.00 0.00 30.08 4.11
52 53 6.544650 ACCATACAACAACAGTATTAACCCA 58.455 36.000 0.00 0.00 30.08 4.51
53 54 6.431852 ACCATACAACAACAGTATTAACCCAC 59.568 38.462 0.00 0.00 30.08 4.61
54 55 6.431543 CCATACAACAACAGTATTAACCCACA 59.568 38.462 0.00 0.00 30.08 4.17
55 56 7.040340 CCATACAACAACAGTATTAACCCACAA 60.040 37.037 0.00 0.00 30.08 3.33
56 57 6.139048 ACAACAACAGTATTAACCCACAAC 57.861 37.500 0.00 0.00 0.00 3.32
57 58 5.068067 ACAACAACAGTATTAACCCACAACC 59.932 40.000 0.00 0.00 0.00 3.77
58 59 4.794334 ACAACAGTATTAACCCACAACCA 58.206 39.130 0.00 0.00 0.00 3.67
59 60 5.202004 ACAACAGTATTAACCCACAACCAA 58.798 37.500 0.00 0.00 0.00 3.67
60 61 5.657302 ACAACAGTATTAACCCACAACCAAA 59.343 36.000 0.00 0.00 0.00 3.28
61 62 6.154706 ACAACAGTATTAACCCACAACCAAAA 59.845 34.615 0.00 0.00 0.00 2.44
62 63 6.793505 ACAGTATTAACCCACAACCAAAAA 57.206 33.333 0.00 0.00 0.00 1.94
79 80 3.525268 AAAAAGAACTGCCACAACTGG 57.475 42.857 0.00 0.00 41.13 4.00
95 96 2.263540 GGCAACAAGGCATGCAGG 59.736 61.111 21.36 10.45 44.32 4.85
96 97 2.433664 GCAACAAGGCATGCAGGC 60.434 61.111 21.36 16.47 42.12 4.85
104 105 4.575973 GCATGCAGGCCCGAGGAT 62.576 66.667 13.44 0.00 0.00 3.24
105 106 3.150949 CATGCAGGCCCGAGGATA 58.849 61.111 0.00 0.00 0.00 2.59
106 107 1.451504 CATGCAGGCCCGAGGATAA 59.548 57.895 0.00 0.00 0.00 1.75
107 108 0.886490 CATGCAGGCCCGAGGATAAC 60.886 60.000 0.00 0.00 0.00 1.89
108 109 2.056906 ATGCAGGCCCGAGGATAACC 62.057 60.000 0.00 0.00 0.00 2.85
109 110 2.829592 CAGGCCCGAGGATAACCC 59.170 66.667 0.00 0.00 36.73 4.11
110 111 2.070039 CAGGCCCGAGGATAACCCA 61.070 63.158 0.00 0.00 37.41 4.51
111 112 1.307517 AGGCCCGAGGATAACCCAA 60.308 57.895 0.00 0.00 37.41 4.12
112 113 0.917333 AGGCCCGAGGATAACCCAAA 60.917 55.000 0.00 0.00 37.41 3.28
113 114 0.033894 GGCCCGAGGATAACCCAAAA 60.034 55.000 0.00 0.00 37.41 2.44
114 115 1.389555 GCCCGAGGATAACCCAAAAG 58.610 55.000 0.00 0.00 37.41 2.27
115 116 2.022238 GCCCGAGGATAACCCAAAAGG 61.022 57.143 0.00 0.00 43.78 3.11
116 117 1.562475 CCCGAGGATAACCCAAAAGGA 59.438 52.381 0.00 0.00 39.89 3.36
117 118 2.640184 CCGAGGATAACCCAAAAGGAC 58.360 52.381 0.00 0.00 39.89 3.85
118 119 2.026636 CCGAGGATAACCCAAAAGGACA 60.027 50.000 0.00 0.00 39.89 4.02
119 120 3.560453 CCGAGGATAACCCAAAAGGACAA 60.560 47.826 0.00 0.00 39.89 3.18
120 121 4.270008 CGAGGATAACCCAAAAGGACAAT 58.730 43.478 0.00 0.00 39.89 2.71
121 122 4.705023 CGAGGATAACCCAAAAGGACAATT 59.295 41.667 0.00 0.00 39.89 2.32
122 123 5.185056 CGAGGATAACCCAAAAGGACAATTT 59.815 40.000 0.00 0.00 39.89 1.82
123 124 6.376018 CGAGGATAACCCAAAAGGACAATTTA 59.624 38.462 0.00 0.00 39.89 1.40
124 125 7.094118 CGAGGATAACCCAAAAGGACAATTTAA 60.094 37.037 0.00 0.00 39.89 1.52
125 126 7.903145 AGGATAACCCAAAAGGACAATTTAAC 58.097 34.615 0.00 0.00 39.89 2.01
126 127 7.733047 AGGATAACCCAAAAGGACAATTTAACT 59.267 33.333 0.00 0.00 39.89 2.24
127 128 7.817478 GGATAACCCAAAAGGACAATTTAACTG 59.183 37.037 0.00 0.00 39.89 3.16
128 129 6.800072 AACCCAAAAGGACAATTTAACTGA 57.200 33.333 0.00 0.00 39.89 3.41
129 130 6.405278 ACCCAAAAGGACAATTTAACTGAG 57.595 37.500 0.00 0.00 39.89 3.35
130 131 5.304357 ACCCAAAAGGACAATTTAACTGAGG 59.696 40.000 0.00 0.00 39.89 3.86
131 132 5.279456 CCCAAAAGGACAATTTAACTGAGGG 60.279 44.000 0.00 0.00 38.24 4.30
132 133 5.538433 CCAAAAGGACAATTTAACTGAGGGA 59.462 40.000 0.00 0.00 0.00 4.20
133 134 6.041523 CCAAAAGGACAATTTAACTGAGGGAA 59.958 38.462 0.00 0.00 0.00 3.97
134 135 6.901081 AAAGGACAATTTAACTGAGGGAAG 57.099 37.500 0.00 0.00 0.00 3.46
135 136 4.923415 AGGACAATTTAACTGAGGGAAGG 58.077 43.478 0.00 0.00 0.00 3.46
136 137 3.444034 GGACAATTTAACTGAGGGAAGGC 59.556 47.826 0.00 0.00 0.00 4.35
137 138 4.079253 GACAATTTAACTGAGGGAAGGCA 58.921 43.478 0.00 0.00 0.00 4.75
138 139 4.677182 ACAATTTAACTGAGGGAAGGCAT 58.323 39.130 0.00 0.00 0.00 4.40
139 140 4.463891 ACAATTTAACTGAGGGAAGGCATG 59.536 41.667 0.00 0.00 0.00 4.06
140 141 2.128771 TTAACTGAGGGAAGGCATGC 57.871 50.000 9.90 9.90 0.00 4.06
141 142 1.289160 TAACTGAGGGAAGGCATGCT 58.711 50.000 18.92 0.00 0.00 3.79
142 143 0.323178 AACTGAGGGAAGGCATGCTG 60.323 55.000 18.92 0.00 0.00 4.41
143 144 1.203441 ACTGAGGGAAGGCATGCTGA 61.203 55.000 18.92 0.00 0.00 4.26
144 145 0.034767 CTGAGGGAAGGCATGCTGAA 60.035 55.000 18.92 0.00 0.00 3.02
145 146 0.034767 TGAGGGAAGGCATGCTGAAG 60.035 55.000 18.92 0.00 0.00 3.02
146 147 0.750911 GAGGGAAGGCATGCTGAAGG 60.751 60.000 18.92 0.00 0.00 3.46
147 148 1.210204 AGGGAAGGCATGCTGAAGGA 61.210 55.000 18.92 0.00 0.00 3.36
148 149 0.323725 GGGAAGGCATGCTGAAGGAA 60.324 55.000 18.92 0.00 0.00 3.36
149 150 1.549203 GGAAGGCATGCTGAAGGAAA 58.451 50.000 18.92 0.00 0.00 3.13
150 151 1.475682 GGAAGGCATGCTGAAGGAAAG 59.524 52.381 18.92 0.00 0.00 2.62
151 152 0.893447 AAGGCATGCTGAAGGAAAGC 59.107 50.000 18.92 0.00 41.22 3.51
158 159 1.609208 GCTGAAGGAAAGCAACAGGA 58.391 50.000 0.00 0.00 40.52 3.86
159 160 1.956477 GCTGAAGGAAAGCAACAGGAA 59.044 47.619 0.00 0.00 40.52 3.36
160 161 2.287849 GCTGAAGGAAAGCAACAGGAAC 60.288 50.000 0.00 0.00 40.52 3.62
161 162 3.217626 CTGAAGGAAAGCAACAGGAACT 58.782 45.455 0.00 0.00 43.88 3.01
162 163 4.389374 CTGAAGGAAAGCAACAGGAACTA 58.611 43.478 0.00 0.00 36.02 2.24
163 164 4.985538 TGAAGGAAAGCAACAGGAACTAT 58.014 39.130 0.00 0.00 36.02 2.12
164 165 4.761739 TGAAGGAAAGCAACAGGAACTATG 59.238 41.667 0.00 0.00 36.02 2.23
165 166 4.640771 AGGAAAGCAACAGGAACTATGA 57.359 40.909 0.00 0.00 36.02 2.15
166 167 5.184892 AGGAAAGCAACAGGAACTATGAT 57.815 39.130 0.00 0.00 36.02 2.45
167 168 4.946157 AGGAAAGCAACAGGAACTATGATG 59.054 41.667 0.00 0.00 36.02 3.07
168 169 4.439289 GGAAAGCAACAGGAACTATGATGC 60.439 45.833 0.52 0.52 44.22 3.91
169 170 2.648059 AGCAACAGGAACTATGATGCC 58.352 47.619 4.81 0.00 44.77 4.40
170 171 1.678101 GCAACAGGAACTATGATGCCC 59.322 52.381 0.00 0.00 39.69 5.36
171 172 2.684927 GCAACAGGAACTATGATGCCCT 60.685 50.000 0.00 0.00 39.69 5.19
172 173 6.980716 AGCAACAGGAACTATGATGCCCTG 62.981 50.000 0.00 0.00 44.77 4.45
173 174 1.492176 ACAGGAACTATGATGCCCTGG 59.508 52.381 10.91 0.00 46.40 4.45
174 175 0.475906 AGGAACTATGATGCCCTGGC 59.524 55.000 0.00 0.00 36.02 4.85
175 176 0.538287 GGAACTATGATGCCCTGGCC 60.538 60.000 5.57 0.00 41.09 5.36
176 177 0.538287 GAACTATGATGCCCTGGCCC 60.538 60.000 5.57 0.00 41.09 5.80
177 178 2.033141 CTATGATGCCCTGGCCCG 59.967 66.667 5.57 0.00 41.09 6.13
178 179 2.772191 TATGATGCCCTGGCCCGT 60.772 61.111 5.57 1.94 41.09 5.28
179 180 2.343475 CTATGATGCCCTGGCCCGTT 62.343 60.000 5.57 0.00 41.09 4.44
180 181 2.337879 TATGATGCCCTGGCCCGTTC 62.338 60.000 5.57 0.00 41.09 3.95
185 186 3.979497 CCCTGGCCCGTTCCCTTT 61.979 66.667 0.00 0.00 0.00 3.11
186 187 2.361230 CCTGGCCCGTTCCCTTTC 60.361 66.667 0.00 0.00 0.00 2.62
187 188 2.746277 CTGGCCCGTTCCCTTTCG 60.746 66.667 0.00 0.00 0.00 3.46
188 189 4.338710 TGGCCCGTTCCCTTTCGG 62.339 66.667 0.00 0.00 45.42 4.30
195 196 2.450609 CGTTCCCTTTCGGAGAGAAA 57.549 50.000 0.00 0.00 45.76 2.52
196 197 2.354805 CCGTTCCCTTTCGGAGAGAAAT 60.355 50.000 0.00 0.00 46.60 2.17
197 198 3.118884 CCGTTCCCTTTCGGAGAGAAATA 60.119 47.826 0.00 0.00 46.60 1.40
198 199 4.443034 CCGTTCCCTTTCGGAGAGAAATAT 60.443 45.833 0.00 0.00 46.60 1.28
199 200 5.221382 CCGTTCCCTTTCGGAGAGAAATATA 60.221 44.000 0.00 0.00 46.60 0.86
200 201 5.921408 CGTTCCCTTTCGGAGAGAAATATAG 59.079 44.000 0.00 0.00 46.60 1.31
201 202 5.470047 TCCCTTTCGGAGAGAAATATAGC 57.530 43.478 0.00 0.00 46.60 2.97
202 203 4.899457 TCCCTTTCGGAGAGAAATATAGCA 59.101 41.667 0.00 0.00 46.60 3.49
203 204 5.011125 TCCCTTTCGGAGAGAAATATAGCAG 59.989 44.000 0.00 0.00 46.60 4.24
204 205 5.221541 CCCTTTCGGAGAGAAATATAGCAGT 60.222 44.000 0.00 0.00 46.60 4.40
205 206 6.284459 CCTTTCGGAGAGAAATATAGCAGTT 58.716 40.000 0.00 0.00 46.60 3.16
206 207 6.201806 CCTTTCGGAGAGAAATATAGCAGTTG 59.798 42.308 0.00 0.00 46.60 3.16
207 208 4.621991 TCGGAGAGAAATATAGCAGTTGC 58.378 43.478 0.00 0.00 42.49 4.17
208 209 4.099419 TCGGAGAGAAATATAGCAGTTGCA 59.901 41.667 6.90 0.00 45.16 4.08
209 210 4.210120 CGGAGAGAAATATAGCAGTTGCAC 59.790 45.833 6.90 0.00 45.16 4.57
210 211 4.210120 GGAGAGAAATATAGCAGTTGCACG 59.790 45.833 6.90 0.00 45.16 5.34
211 212 3.557595 AGAGAAATATAGCAGTTGCACGC 59.442 43.478 6.90 0.00 45.16 5.34
212 213 3.270027 AGAAATATAGCAGTTGCACGCA 58.730 40.909 6.90 0.00 45.16 5.24
213 214 3.689161 AGAAATATAGCAGTTGCACGCAA 59.311 39.130 6.90 0.00 45.16 4.85
214 215 4.155826 AGAAATATAGCAGTTGCACGCAAA 59.844 37.500 5.94 0.00 45.16 3.68
215 216 2.892373 TATAGCAGTTGCACGCAAAC 57.108 45.000 5.94 1.48 45.16 2.93
216 217 1.238439 ATAGCAGTTGCACGCAAACT 58.762 45.000 5.94 7.16 45.16 2.66
217 218 1.872388 TAGCAGTTGCACGCAAACTA 58.128 45.000 5.94 6.23 45.16 2.24
218 219 1.238439 AGCAGTTGCACGCAAACTAT 58.762 45.000 5.94 0.00 45.16 2.12
219 220 1.197721 AGCAGTTGCACGCAAACTATC 59.802 47.619 5.94 0.00 45.16 2.08
220 221 1.869503 CAGTTGCACGCAAACTATCG 58.130 50.000 5.94 0.00 37.70 2.92
221 222 1.459209 CAGTTGCACGCAAACTATCGA 59.541 47.619 5.94 0.00 37.70 3.59
222 223 2.094258 CAGTTGCACGCAAACTATCGAT 59.906 45.455 5.94 2.16 37.70 3.59
223 224 2.094258 AGTTGCACGCAAACTATCGATG 59.906 45.455 8.54 0.52 37.70 3.84
224 225 2.003196 TGCACGCAAACTATCGATGA 57.997 45.000 8.54 0.00 0.00 2.92
225 226 1.926510 TGCACGCAAACTATCGATGAG 59.073 47.619 8.54 4.37 0.00 2.90
226 227 1.258982 GCACGCAAACTATCGATGAGG 59.741 52.381 8.54 0.71 0.00 3.86
227 228 1.860950 CACGCAAACTATCGATGAGGG 59.139 52.381 8.54 4.30 0.00 4.30
228 229 0.861837 CGCAAACTATCGATGAGGGC 59.138 55.000 8.54 4.61 0.00 5.19
229 230 1.230324 GCAAACTATCGATGAGGGCC 58.770 55.000 8.54 0.00 0.00 5.80
230 231 1.202698 GCAAACTATCGATGAGGGCCT 60.203 52.381 5.25 5.25 0.00 5.19
231 232 2.760374 CAAACTATCGATGAGGGCCTC 58.240 52.381 26.95 26.95 0.00 4.70
232 233 1.343069 AACTATCGATGAGGGCCTCC 58.657 55.000 30.03 15.00 0.00 4.30
233 234 0.188587 ACTATCGATGAGGGCCTCCA 59.811 55.000 30.03 18.30 34.83 3.86
234 235 1.342074 CTATCGATGAGGGCCTCCAA 58.658 55.000 30.03 13.76 34.83 3.53
235 236 1.905215 CTATCGATGAGGGCCTCCAAT 59.095 52.381 30.03 18.17 34.83 3.16
236 237 0.399454 ATCGATGAGGGCCTCCAATG 59.601 55.000 30.03 16.97 34.83 2.82
237 238 1.895707 CGATGAGGGCCTCCAATGC 60.896 63.158 30.03 13.48 34.83 3.56
244 245 3.830192 GCCTCCAATGCCGCCTTG 61.830 66.667 1.65 1.65 0.00 3.61
245 246 2.361610 CCTCCAATGCCGCCTTGT 60.362 61.111 7.50 0.00 0.00 3.16
246 247 2.409870 CCTCCAATGCCGCCTTGTC 61.410 63.158 7.50 0.00 0.00 3.18
247 248 1.675310 CTCCAATGCCGCCTTGTCA 60.675 57.895 7.50 0.00 0.00 3.58
248 249 1.651240 CTCCAATGCCGCCTTGTCAG 61.651 60.000 7.50 0.36 0.00 3.51
249 250 2.180017 CAATGCCGCCTTGTCAGC 59.820 61.111 0.54 0.00 0.00 4.26
250 251 3.064324 AATGCCGCCTTGTCAGCC 61.064 61.111 0.00 0.00 0.00 4.85
251 252 3.574074 AATGCCGCCTTGTCAGCCT 62.574 57.895 0.00 0.00 0.00 4.58
252 253 3.574074 ATGCCGCCTTGTCAGCCTT 62.574 57.895 0.00 0.00 0.00 4.35
253 254 3.435186 GCCGCCTTGTCAGCCTTC 61.435 66.667 0.00 0.00 0.00 3.46
254 255 2.348998 CCGCCTTGTCAGCCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
255 256 1.302832 CCGCCTTGTCAGCCTTCTT 60.303 57.895 0.00 0.00 0.00 2.52
256 257 0.036388 CCGCCTTGTCAGCCTTCTTA 60.036 55.000 0.00 0.00 0.00 2.10
257 258 1.610624 CCGCCTTGTCAGCCTTCTTAA 60.611 52.381 0.00 0.00 0.00 1.85
258 259 2.359900 CGCCTTGTCAGCCTTCTTAAT 58.640 47.619 0.00 0.00 0.00 1.40
259 260 2.352960 CGCCTTGTCAGCCTTCTTAATC 59.647 50.000 0.00 0.00 0.00 1.75
260 261 3.347216 GCCTTGTCAGCCTTCTTAATCA 58.653 45.455 0.00 0.00 0.00 2.57
261 262 3.376546 GCCTTGTCAGCCTTCTTAATCAG 59.623 47.826 0.00 0.00 0.00 2.90
262 263 4.836825 CCTTGTCAGCCTTCTTAATCAGA 58.163 43.478 0.00 0.00 0.00 3.27
263 264 5.248640 CCTTGTCAGCCTTCTTAATCAGAA 58.751 41.667 0.00 0.00 39.39 3.02
264 265 5.707298 CCTTGTCAGCCTTCTTAATCAGAAA 59.293 40.000 0.00 0.00 41.25 2.52
265 266 6.376581 CCTTGTCAGCCTTCTTAATCAGAAAT 59.623 38.462 0.00 0.00 41.25 2.17
266 267 7.094032 CCTTGTCAGCCTTCTTAATCAGAAATT 60.094 37.037 0.00 0.00 41.25 1.82
267 268 7.765695 TGTCAGCCTTCTTAATCAGAAATTT 57.234 32.000 0.00 0.00 41.25 1.82
268 269 7.820648 TGTCAGCCTTCTTAATCAGAAATTTC 58.179 34.615 10.33 10.33 41.25 2.17
269 270 7.094205 TGTCAGCCTTCTTAATCAGAAATTTCC 60.094 37.037 14.61 0.00 41.25 3.13
270 271 6.947733 TCAGCCTTCTTAATCAGAAATTTCCA 59.052 34.615 14.61 2.26 41.25 3.53
271 272 7.031975 CAGCCTTCTTAATCAGAAATTTCCAC 58.968 38.462 14.61 0.00 41.25 4.02
272 273 6.950619 AGCCTTCTTAATCAGAAATTTCCACT 59.049 34.615 14.61 0.30 41.25 4.00
273 274 7.031975 GCCTTCTTAATCAGAAATTTCCACTG 58.968 38.462 14.61 7.04 41.25 3.66
274 275 7.031975 CCTTCTTAATCAGAAATTTCCACTGC 58.968 38.462 14.61 0.00 41.25 4.40
275 276 7.094032 CCTTCTTAATCAGAAATTTCCACTGCT 60.094 37.037 14.61 0.00 41.25 4.24
276 277 7.149569 TCTTAATCAGAAATTTCCACTGCTG 57.850 36.000 14.61 5.63 0.00 4.41
277 278 3.863142 ATCAGAAATTTCCACTGCTGC 57.137 42.857 14.61 0.00 0.00 5.25
278 279 2.585330 TCAGAAATTTCCACTGCTGCA 58.415 42.857 14.61 0.88 0.00 4.41
279 280 2.957680 TCAGAAATTTCCACTGCTGCAA 59.042 40.909 14.61 0.00 0.00 4.08
280 281 3.384146 TCAGAAATTTCCACTGCTGCAAA 59.616 39.130 14.61 0.00 0.00 3.68
281 282 4.121317 CAGAAATTTCCACTGCTGCAAAA 58.879 39.130 14.61 1.42 0.00 2.44
282 283 4.210537 CAGAAATTTCCACTGCTGCAAAAG 59.789 41.667 14.61 0.00 0.00 2.27
297 298 6.971527 CTGCAAAAGCATGGATAATTTGAA 57.028 33.333 0.00 0.00 33.86 2.69
298 299 6.971527 TGCAAAAGCATGGATAATTTGAAG 57.028 33.333 0.00 0.00 33.86 3.02
299 300 6.699366 TGCAAAAGCATGGATAATTTGAAGA 58.301 32.000 0.00 0.00 33.86 2.87
300 301 7.332557 TGCAAAAGCATGGATAATTTGAAGAT 58.667 30.769 0.00 0.00 33.86 2.40
301 302 8.476447 TGCAAAAGCATGGATAATTTGAAGATA 58.524 29.630 0.00 0.00 33.86 1.98
302 303 9.316730 GCAAAAGCATGGATAATTTGAAGATAA 57.683 29.630 0.00 0.00 33.86 1.75
304 305 9.520204 AAAAGCATGGATAATTTGAAGATAACG 57.480 29.630 0.00 0.00 0.00 3.18
305 306 7.807977 AGCATGGATAATTTGAAGATAACGT 57.192 32.000 0.00 0.00 0.00 3.99
306 307 8.225603 AGCATGGATAATTTGAAGATAACGTT 57.774 30.769 5.88 5.88 0.00 3.99
307 308 9.337396 AGCATGGATAATTTGAAGATAACGTTA 57.663 29.630 11.02 11.02 0.00 3.18
308 309 9.599322 GCATGGATAATTTGAAGATAACGTTAG 57.401 33.333 14.25 0.00 0.00 2.34
309 310 9.599322 CATGGATAATTTGAAGATAACGTTAGC 57.401 33.333 15.56 15.56 0.00 3.09
310 311 8.149973 TGGATAATTTGAAGATAACGTTAGCC 57.850 34.615 19.29 10.62 0.00 3.93
311 312 7.771361 TGGATAATTTGAAGATAACGTTAGCCA 59.229 33.333 19.29 8.97 34.78 4.75
312 313 8.068380 GGATAATTTGAAGATAACGTTAGCCAC 58.932 37.037 19.29 13.80 0.00 5.01
313 314 5.813080 ATTTGAAGATAACGTTAGCCACC 57.187 39.130 19.29 9.67 0.00 4.61
314 315 2.883574 TGAAGATAACGTTAGCCACCG 58.116 47.619 19.29 0.00 0.00 4.94
315 316 2.492881 TGAAGATAACGTTAGCCACCGA 59.507 45.455 19.29 0.00 0.00 4.69
316 317 2.865343 AGATAACGTTAGCCACCGAG 57.135 50.000 19.29 0.00 0.00 4.63
317 318 1.202382 AGATAACGTTAGCCACCGAGC 60.202 52.381 19.29 0.00 0.00 5.03
319 320 1.462616 TAACGTTAGCCACCGAGCTA 58.537 50.000 3.29 0.00 42.70 3.32
320 321 0.172803 AACGTTAGCCACCGAGCTAG 59.827 55.000 0.00 0.00 45.69 3.42
321 322 1.065928 CGTTAGCCACCGAGCTAGG 59.934 63.158 11.86 11.86 45.69 3.02
322 323 1.442148 GTTAGCCACCGAGCTAGGG 59.558 63.158 17.90 9.78 45.69 3.53
323 324 1.041447 GTTAGCCACCGAGCTAGGGA 61.041 60.000 17.90 0.00 45.69 4.20
324 325 0.324923 TTAGCCACCGAGCTAGGGAA 60.325 55.000 17.90 0.60 45.69 3.97
325 326 1.041447 TAGCCACCGAGCTAGGGAAC 61.041 60.000 17.90 5.56 42.70 3.62
326 327 2.656069 GCCACCGAGCTAGGGAACA 61.656 63.158 17.90 0.00 35.02 3.18
327 328 1.218316 CCACCGAGCTAGGGAACAC 59.782 63.158 17.90 0.00 35.02 3.32
328 329 1.218316 CACCGAGCTAGGGAACACC 59.782 63.158 17.90 0.00 40.67 4.16
341 342 4.680171 GGGAACACCTTTTCAATACTCG 57.320 45.455 0.00 0.00 35.85 4.18
342 343 3.119955 GGGAACACCTTTTCAATACTCGC 60.120 47.826 0.00 0.00 35.85 5.03
343 344 3.751698 GGAACACCTTTTCAATACTCGCT 59.248 43.478 0.00 0.00 0.00 4.93
344 345 4.142881 GGAACACCTTTTCAATACTCGCTC 60.143 45.833 0.00 0.00 0.00 5.03
345 346 3.335579 ACACCTTTTCAATACTCGCTCC 58.664 45.455 0.00 0.00 0.00 4.70
346 347 2.348666 CACCTTTTCAATACTCGCTCCG 59.651 50.000 0.00 0.00 0.00 4.63
347 348 2.028385 ACCTTTTCAATACTCGCTCCGT 60.028 45.455 0.00 0.00 0.00 4.69
348 349 3.000727 CCTTTTCAATACTCGCTCCGTT 58.999 45.455 0.00 0.00 0.00 4.44
349 350 3.435671 CCTTTTCAATACTCGCTCCGTTT 59.564 43.478 0.00 0.00 0.00 3.60
350 351 4.083484 CCTTTTCAATACTCGCTCCGTTTT 60.083 41.667 0.00 0.00 0.00 2.43
351 352 5.427036 TTTTCAATACTCGCTCCGTTTTT 57.573 34.783 0.00 0.00 0.00 1.94
352 353 6.347888 CCTTTTCAATACTCGCTCCGTTTTTA 60.348 38.462 0.00 0.00 0.00 1.52
353 354 6.730960 TTTCAATACTCGCTCCGTTTTTAT 57.269 33.333 0.00 0.00 0.00 1.40
354 355 6.730960 TTCAATACTCGCTCCGTTTTTATT 57.269 33.333 0.00 0.00 0.00 1.40
355 356 6.730960 TCAATACTCGCTCCGTTTTTATTT 57.269 33.333 0.00 0.00 0.00 1.40
356 357 7.830940 TCAATACTCGCTCCGTTTTTATTTA 57.169 32.000 0.00 0.00 0.00 1.40
357 358 8.254178 TCAATACTCGCTCCGTTTTTATTTAA 57.746 30.769 0.00 0.00 0.00 1.52
358 359 8.885722 TCAATACTCGCTCCGTTTTTATTTAAT 58.114 29.630 0.00 0.00 0.00 1.40
359 360 9.155053 CAATACTCGCTCCGTTTTTATTTAATC 57.845 33.333 0.00 0.00 0.00 1.75
360 361 6.115450 ACTCGCTCCGTTTTTATTTAATCC 57.885 37.500 0.00 0.00 0.00 3.01
361 362 5.146482 TCGCTCCGTTTTTATTTAATCCG 57.854 39.130 0.00 0.00 0.00 4.18
362 363 3.722289 CGCTCCGTTTTTATTTAATCCGC 59.278 43.478 0.00 0.00 0.00 5.54
363 364 4.495184 CGCTCCGTTTTTATTTAATCCGCT 60.495 41.667 0.00 0.00 0.00 5.52
364 365 5.337554 GCTCCGTTTTTATTTAATCCGCTT 58.662 37.500 0.00 0.00 0.00 4.68
365 366 6.488817 GCTCCGTTTTTATTTAATCCGCTTA 58.511 36.000 0.00 0.00 0.00 3.09
366 367 7.136772 GCTCCGTTTTTATTTAATCCGCTTAT 58.863 34.615 0.00 0.00 0.00 1.73
367 368 7.646526 GCTCCGTTTTTATTTAATCCGCTTATT 59.353 33.333 0.00 0.00 0.00 1.40
370 371 9.940166 CCGTTTTTATTTAATCCGCTTATTAGT 57.060 29.630 0.00 0.00 0.00 2.24
376 377 9.841295 TTATTTAATCCGCTTATTAGTTCTGGT 57.159 29.630 0.00 0.00 0.00 4.00
377 378 7.781548 TTTAATCCGCTTATTAGTTCTGGTC 57.218 36.000 0.00 0.00 0.00 4.02
378 379 5.353394 AATCCGCTTATTAGTTCTGGTCA 57.647 39.130 0.00 0.00 0.00 4.02
379 380 4.811969 TCCGCTTATTAGTTCTGGTCAA 57.188 40.909 0.00 0.00 0.00 3.18
380 381 5.155278 TCCGCTTATTAGTTCTGGTCAAA 57.845 39.130 0.00 0.00 0.00 2.69
381 382 5.175859 TCCGCTTATTAGTTCTGGTCAAAG 58.824 41.667 0.00 0.00 0.00 2.77
382 383 4.935808 CCGCTTATTAGTTCTGGTCAAAGT 59.064 41.667 0.00 0.00 0.00 2.66
383 384 5.063564 CCGCTTATTAGTTCTGGTCAAAGTC 59.936 44.000 0.00 0.00 0.00 3.01
384 385 5.637810 CGCTTATTAGTTCTGGTCAAAGTCA 59.362 40.000 0.00 0.00 0.00 3.41
385 386 6.147164 CGCTTATTAGTTCTGGTCAAAGTCAA 59.853 38.462 0.00 0.00 0.00 3.18
386 387 7.522374 GCTTATTAGTTCTGGTCAAAGTCAAG 58.478 38.462 0.00 0.00 0.00 3.02
387 388 5.948992 ATTAGTTCTGGTCAAAGTCAAGC 57.051 39.130 0.00 0.00 0.00 4.01
388 389 3.567478 AGTTCTGGTCAAAGTCAAGCT 57.433 42.857 0.00 0.00 0.00 3.74
389 390 3.891049 AGTTCTGGTCAAAGTCAAGCTT 58.109 40.909 0.00 0.00 39.52 3.74
402 403 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
403 404 6.509418 AGTCAAGCTTTGTAAACTTTGACA 57.491 33.333 20.02 0.00 30.59 3.58
404 405 6.919721 AGTCAAGCTTTGTAAACTTTGACAA 58.080 32.000 20.02 0.88 33.81 3.18
405 406 7.375053 AGTCAAGCTTTGTAAACTTTGACAAA 58.625 30.769 20.02 0.00 41.90 2.83
575 576 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
576 577 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
577 578 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
595 596 7.956420 TGCAGAGTAAATAAAAACGAAGAGA 57.044 32.000 0.00 0.00 0.00 3.10
596 597 8.373048 TGCAGAGTAAATAAAAACGAAGAGAA 57.627 30.769 0.00 0.00 0.00 2.87
597 598 8.999431 TGCAGAGTAAATAAAAACGAAGAGAAT 58.001 29.630 0.00 0.00 0.00 2.40
613 614 8.936864 ACGAAGAGAATAGTAATTTGTTTCTGG 58.063 33.333 0.00 0.00 0.00 3.86
614 615 8.936864 CGAAGAGAATAGTAATTTGTTTCTGGT 58.063 33.333 0.00 0.00 0.00 4.00
619 620 9.668497 AGAATAGTAATTTGTTTCTGGTAGTCC 57.332 33.333 0.00 0.00 0.00 3.85
620 621 9.444600 GAATAGTAATTTGTTTCTGGTAGTCCA 57.555 33.333 0.00 0.00 42.05 4.02
621 622 8.788325 ATAGTAATTTGTTTCTGGTAGTCCAC 57.212 34.615 0.00 0.00 39.03 4.02
622 623 6.597562 AGTAATTTGTTTCTGGTAGTCCACA 58.402 36.000 0.00 0.00 39.03 4.17
623 624 6.710744 AGTAATTTGTTTCTGGTAGTCCACAG 59.289 38.462 0.00 0.00 39.03 3.66
637 638 0.322322 CCACAGGTGCCATGCATTTT 59.678 50.000 0.00 0.00 41.91 1.82
644 645 2.477863 GGTGCCATGCATTTTAGACGTC 60.478 50.000 7.70 7.70 41.91 4.34
677 678 4.617520 TGCTCCTTTGTCCGCGCA 62.618 61.111 8.75 0.00 0.00 6.09
705 706 3.496160 GGTGCGGGATCTACCAATTATGT 60.496 47.826 0.00 0.00 41.20 2.29
723 724 1.354031 TGTGCACCCCTATGTGTCATT 59.646 47.619 15.69 0.00 38.52 2.57
757 758 3.209410 CAGCACCAGAATCTACATTCCC 58.791 50.000 0.00 0.00 39.58 3.97
809 817 7.795047 TCAGAATCAGAATCTAATTAGCCACA 58.205 34.615 7.67 0.00 0.00 4.17
924 941 2.974698 GCACCGAAGCAGCACAGT 60.975 61.111 0.00 0.00 0.00 3.55
943 960 4.635765 ACAGTGATCATCAAACCATAACCG 59.364 41.667 0.00 0.00 0.00 4.44
1278 1341 3.119352 GGGCTTGGAACTGATTCATCAAC 60.119 47.826 0.00 0.00 36.46 3.18
1402 1554 1.471153 GCCCTAGCTAGGTTGACGTTC 60.471 57.143 33.00 11.43 42.03 3.95
1440 1592 0.390209 GCAATGGAATGCCGCTTGTT 60.390 50.000 6.69 0.00 40.49 2.83
1441 1593 1.352114 CAATGGAATGCCGCTTGTTG 58.648 50.000 0.00 0.00 36.79 3.33
1607 1798 4.244425 TGGATGCGCTAATCTTAGAGAC 57.756 45.455 9.73 0.00 33.12 3.36
1613 1808 3.181464 GCGCTAATCTTAGAGACCCCTTT 60.181 47.826 0.00 0.00 33.12 3.11
1614 1809 4.623002 CGCTAATCTTAGAGACCCCTTTC 58.377 47.826 1.13 0.00 33.12 2.62
1615 1810 4.342665 CGCTAATCTTAGAGACCCCTTTCT 59.657 45.833 1.13 0.00 33.12 2.52
1616 1811 5.163395 CGCTAATCTTAGAGACCCCTTTCTT 60.163 44.000 1.13 0.00 33.12 2.52
1698 1904 1.421382 CAAAAACCAGATTGCAGCGG 58.579 50.000 0.00 0.00 0.00 5.52
1732 1938 7.980662 CCCAGATTGCAGAACATATATAGAGAG 59.019 40.741 0.00 0.00 0.00 3.20
1808 2035 6.239120 CCAAATAAGGGCATGTTTCTCCTATG 60.239 42.308 0.00 0.00 0.00 2.23
2016 2297 7.860373 AGCGTAATTATGTACCGTATAACGAAA 59.140 33.333 6.55 0.00 46.05 3.46
2193 2576 8.458573 TGGAGTAAACAACAGTGATGTAAATT 57.541 30.769 6.45 0.69 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.421268 TGGTTGTGACTCTCATTGCCT 59.579 47.619 0.00 0.00 0.00 4.75
2 3 1.896220 TGGTTGTGACTCTCATTGCC 58.104 50.000 0.00 0.00 0.00 4.52
3 4 2.351157 GCTTGGTTGTGACTCTCATTGC 60.351 50.000 0.00 0.00 0.00 3.56
4 5 2.227388 GGCTTGGTTGTGACTCTCATTG 59.773 50.000 0.00 0.00 0.00 2.82
5 6 2.158623 TGGCTTGGTTGTGACTCTCATT 60.159 45.455 0.00 0.00 0.00 2.57
6 7 1.421268 TGGCTTGGTTGTGACTCTCAT 59.579 47.619 0.00 0.00 0.00 2.90
7 8 0.836606 TGGCTTGGTTGTGACTCTCA 59.163 50.000 0.00 0.00 0.00 3.27
8 9 1.967319 TTGGCTTGGTTGTGACTCTC 58.033 50.000 0.00 0.00 0.00 3.20
9 10 2.024414 GTTTGGCTTGGTTGTGACTCT 58.976 47.619 0.00 0.00 0.00 3.24
10 11 1.067060 GGTTTGGCTTGGTTGTGACTC 59.933 52.381 0.00 0.00 0.00 3.36
11 12 1.111277 GGTTTGGCTTGGTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
12 13 0.820871 TGGTTTGGCTTGGTTGTGAC 59.179 50.000 0.00 0.00 0.00 3.67
13 14 1.786937 ATGGTTTGGCTTGGTTGTGA 58.213 45.000 0.00 0.00 0.00 3.58
14 15 2.363680 TGTATGGTTTGGCTTGGTTGTG 59.636 45.455 0.00 0.00 0.00 3.33
15 16 2.672098 TGTATGGTTTGGCTTGGTTGT 58.328 42.857 0.00 0.00 0.00 3.32
16 17 3.181471 TGTTGTATGGTTTGGCTTGGTTG 60.181 43.478 0.00 0.00 0.00 3.77
17 18 3.034635 TGTTGTATGGTTTGGCTTGGTT 58.965 40.909 0.00 0.00 0.00 3.67
18 19 2.672098 TGTTGTATGGTTTGGCTTGGT 58.328 42.857 0.00 0.00 0.00 3.67
19 20 3.181471 TGTTGTTGTATGGTTTGGCTTGG 60.181 43.478 0.00 0.00 0.00 3.61
20 21 4.050553 CTGTTGTTGTATGGTTTGGCTTG 58.949 43.478 0.00 0.00 0.00 4.01
21 22 3.704061 ACTGTTGTTGTATGGTTTGGCTT 59.296 39.130 0.00 0.00 0.00 4.35
22 23 3.295973 ACTGTTGTTGTATGGTTTGGCT 58.704 40.909 0.00 0.00 0.00 4.75
23 24 3.726291 ACTGTTGTTGTATGGTTTGGC 57.274 42.857 0.00 0.00 0.00 4.52
24 25 7.810759 GGTTAATACTGTTGTTGTATGGTTTGG 59.189 37.037 0.00 0.00 31.76 3.28
25 26 7.810759 GGGTTAATACTGTTGTTGTATGGTTTG 59.189 37.037 0.00 0.00 31.76 2.93
26 27 7.506261 TGGGTTAATACTGTTGTTGTATGGTTT 59.494 33.333 0.00 0.00 31.76 3.27
27 28 7.005296 TGGGTTAATACTGTTGTTGTATGGTT 58.995 34.615 0.00 0.00 31.76 3.67
28 29 6.431852 GTGGGTTAATACTGTTGTTGTATGGT 59.568 38.462 0.00 0.00 31.76 3.55
29 30 6.431543 TGTGGGTTAATACTGTTGTTGTATGG 59.568 38.462 0.00 0.00 31.76 2.74
30 31 7.441890 TGTGGGTTAATACTGTTGTTGTATG 57.558 36.000 0.00 0.00 31.76 2.39
31 32 7.040271 GGTTGTGGGTTAATACTGTTGTTGTAT 60.040 37.037 0.00 0.00 32.60 2.29
32 33 6.262720 GGTTGTGGGTTAATACTGTTGTTGTA 59.737 38.462 0.00 0.00 0.00 2.41
33 34 5.068067 GGTTGTGGGTTAATACTGTTGTTGT 59.932 40.000 0.00 0.00 0.00 3.32
34 35 5.067936 TGGTTGTGGGTTAATACTGTTGTTG 59.932 40.000 0.00 0.00 0.00 3.33
35 36 5.202004 TGGTTGTGGGTTAATACTGTTGTT 58.798 37.500 0.00 0.00 0.00 2.83
36 37 4.794334 TGGTTGTGGGTTAATACTGTTGT 58.206 39.130 0.00 0.00 0.00 3.32
37 38 5.776173 TTGGTTGTGGGTTAATACTGTTG 57.224 39.130 0.00 0.00 0.00 3.33
38 39 6.793505 TTTTGGTTGTGGGTTAATACTGTT 57.206 33.333 0.00 0.00 0.00 3.16
39 40 6.793505 TTTTTGGTTGTGGGTTAATACTGT 57.206 33.333 0.00 0.00 0.00 3.55
59 60 3.525268 CCAGTTGTGGCAGTTCTTTTT 57.475 42.857 0.00 0.00 36.89 1.94
71 72 0.390124 ATGCCTTGTTGCCAGTTGTG 59.610 50.000 0.00 0.00 0.00 3.33
72 73 0.390124 CATGCCTTGTTGCCAGTTGT 59.610 50.000 0.00 0.00 0.00 3.32
73 74 0.947180 GCATGCCTTGTTGCCAGTTG 60.947 55.000 6.36 0.00 32.66 3.16
74 75 1.368579 GCATGCCTTGTTGCCAGTT 59.631 52.632 6.36 0.00 32.66 3.16
75 76 1.812686 CTGCATGCCTTGTTGCCAGT 61.813 55.000 16.68 0.00 38.08 4.00
76 77 1.080093 CTGCATGCCTTGTTGCCAG 60.080 57.895 16.68 0.00 38.08 4.85
77 78 2.575893 CCTGCATGCCTTGTTGCCA 61.576 57.895 16.68 0.00 38.08 4.92
78 79 2.263540 CCTGCATGCCTTGTTGCC 59.736 61.111 16.68 0.00 38.08 4.52
79 80 2.433664 GCCTGCATGCCTTGTTGC 60.434 61.111 16.68 4.88 39.33 4.17
87 88 2.680974 TTATCCTCGGGCCTGCATGC 62.681 60.000 11.82 11.82 0.00 4.06
88 89 0.886490 GTTATCCTCGGGCCTGCATG 60.886 60.000 6.73 0.00 0.00 4.06
89 90 1.451936 GTTATCCTCGGGCCTGCAT 59.548 57.895 6.73 0.96 0.00 3.96
90 91 2.742116 GGTTATCCTCGGGCCTGCA 61.742 63.158 6.73 0.00 0.00 4.41
91 92 2.111251 GGTTATCCTCGGGCCTGC 59.889 66.667 6.73 0.00 0.00 4.85
92 93 1.632018 TTGGGTTATCCTCGGGCCTG 61.632 60.000 4.71 4.71 36.20 4.85
93 94 0.917333 TTTGGGTTATCCTCGGGCCT 60.917 55.000 0.84 0.00 36.20 5.19
94 95 0.033894 TTTTGGGTTATCCTCGGGCC 60.034 55.000 0.00 0.00 36.20 5.80
95 96 1.389555 CTTTTGGGTTATCCTCGGGC 58.610 55.000 0.00 0.00 36.20 6.13
96 97 1.562475 TCCTTTTGGGTTATCCTCGGG 59.438 52.381 0.00 0.00 40.87 5.14
97 98 2.026636 TGTCCTTTTGGGTTATCCTCGG 60.027 50.000 0.00 0.00 40.87 4.63
98 99 3.343941 TGTCCTTTTGGGTTATCCTCG 57.656 47.619 0.00 0.00 40.87 4.63
99 100 6.605471 AAATTGTCCTTTTGGGTTATCCTC 57.395 37.500 0.00 0.00 40.87 3.71
100 101 7.733047 AGTTAAATTGTCCTTTTGGGTTATCCT 59.267 33.333 0.00 0.00 40.87 3.24
101 102 7.817478 CAGTTAAATTGTCCTTTTGGGTTATCC 59.183 37.037 0.00 0.00 40.87 2.59
102 103 8.581578 TCAGTTAAATTGTCCTTTTGGGTTATC 58.418 33.333 0.00 0.00 40.87 1.75
103 104 8.485578 TCAGTTAAATTGTCCTTTTGGGTTAT 57.514 30.769 0.00 0.00 40.87 1.89
104 105 7.014808 CCTCAGTTAAATTGTCCTTTTGGGTTA 59.985 37.037 0.00 0.00 40.87 2.85
105 106 6.183360 CCTCAGTTAAATTGTCCTTTTGGGTT 60.183 38.462 0.00 0.00 40.87 4.11
106 107 5.304357 CCTCAGTTAAATTGTCCTTTTGGGT 59.696 40.000 0.00 0.00 40.87 4.51
107 108 5.279456 CCCTCAGTTAAATTGTCCTTTTGGG 60.279 44.000 0.00 0.00 40.87 4.12
108 109 5.538433 TCCCTCAGTTAAATTGTCCTTTTGG 59.462 40.000 0.00 0.00 42.21 3.28
109 110 6.648879 TCCCTCAGTTAAATTGTCCTTTTG 57.351 37.500 0.00 0.00 0.00 2.44
110 111 6.267699 CCTTCCCTCAGTTAAATTGTCCTTTT 59.732 38.462 0.00 0.00 0.00 2.27
111 112 5.775195 CCTTCCCTCAGTTAAATTGTCCTTT 59.225 40.000 0.00 0.00 0.00 3.11
112 113 5.325239 CCTTCCCTCAGTTAAATTGTCCTT 58.675 41.667 0.00 0.00 0.00 3.36
113 114 4.811063 GCCTTCCCTCAGTTAAATTGTCCT 60.811 45.833 0.00 0.00 0.00 3.85
114 115 3.444034 GCCTTCCCTCAGTTAAATTGTCC 59.556 47.826 0.00 0.00 0.00 4.02
115 116 4.079253 TGCCTTCCCTCAGTTAAATTGTC 58.921 43.478 0.00 0.00 0.00 3.18
116 117 4.112634 TGCCTTCCCTCAGTTAAATTGT 57.887 40.909 0.00 0.00 0.00 2.71
117 118 4.678840 GCATGCCTTCCCTCAGTTAAATTG 60.679 45.833 6.36 0.00 0.00 2.32
118 119 3.448660 GCATGCCTTCCCTCAGTTAAATT 59.551 43.478 6.36 0.00 0.00 1.82
119 120 3.026694 GCATGCCTTCCCTCAGTTAAAT 58.973 45.455 6.36 0.00 0.00 1.40
120 121 2.041620 AGCATGCCTTCCCTCAGTTAAA 59.958 45.455 15.66 0.00 0.00 1.52
121 122 1.635487 AGCATGCCTTCCCTCAGTTAA 59.365 47.619 15.66 0.00 0.00 2.01
122 123 1.065199 CAGCATGCCTTCCCTCAGTTA 60.065 52.381 15.66 0.00 0.00 2.24
123 124 0.323178 CAGCATGCCTTCCCTCAGTT 60.323 55.000 15.66 0.00 0.00 3.16
124 125 1.203441 TCAGCATGCCTTCCCTCAGT 61.203 55.000 15.66 0.00 34.76 3.41
125 126 0.034767 TTCAGCATGCCTTCCCTCAG 60.035 55.000 15.66 0.00 34.76 3.35
126 127 0.034767 CTTCAGCATGCCTTCCCTCA 60.035 55.000 15.66 0.00 34.76 3.86
127 128 0.750911 CCTTCAGCATGCCTTCCCTC 60.751 60.000 15.66 0.00 34.76 4.30
128 129 1.210204 TCCTTCAGCATGCCTTCCCT 61.210 55.000 15.66 0.00 34.76 4.20
129 130 0.323725 TTCCTTCAGCATGCCTTCCC 60.324 55.000 15.66 0.00 34.76 3.97
130 131 1.475682 CTTTCCTTCAGCATGCCTTCC 59.524 52.381 15.66 0.00 34.76 3.46
131 132 1.135170 GCTTTCCTTCAGCATGCCTTC 60.135 52.381 15.66 0.00 37.22 3.46
132 133 0.893447 GCTTTCCTTCAGCATGCCTT 59.107 50.000 15.66 0.00 37.22 4.35
133 134 0.251474 TGCTTTCCTTCAGCATGCCT 60.251 50.000 15.66 0.00 42.49 4.75
134 135 0.604578 TTGCTTTCCTTCAGCATGCC 59.395 50.000 15.66 0.00 46.62 4.40
135 136 1.000060 TGTTGCTTTCCTTCAGCATGC 60.000 47.619 10.51 10.51 46.62 4.06
136 137 2.352421 CCTGTTGCTTTCCTTCAGCATG 60.352 50.000 0.00 0.00 46.62 4.06
137 138 1.891150 CCTGTTGCTTTCCTTCAGCAT 59.109 47.619 0.00 0.00 46.62 3.79
138 139 1.133823 TCCTGTTGCTTTCCTTCAGCA 60.134 47.619 0.00 0.00 45.73 4.41
139 140 1.609208 TCCTGTTGCTTTCCTTCAGC 58.391 50.000 0.00 0.00 37.82 4.26
140 141 3.217626 AGTTCCTGTTGCTTTCCTTCAG 58.782 45.455 0.00 0.00 0.00 3.02
141 142 3.297134 AGTTCCTGTTGCTTTCCTTCA 57.703 42.857 0.00 0.00 0.00 3.02
142 143 5.003804 TCATAGTTCCTGTTGCTTTCCTTC 58.996 41.667 0.00 0.00 0.00 3.46
143 144 4.985538 TCATAGTTCCTGTTGCTTTCCTT 58.014 39.130 0.00 0.00 0.00 3.36
144 145 4.640771 TCATAGTTCCTGTTGCTTTCCT 57.359 40.909 0.00 0.00 0.00 3.36
145 146 4.439289 GCATCATAGTTCCTGTTGCTTTCC 60.439 45.833 0.00 0.00 36.72 3.13
146 147 4.439289 GGCATCATAGTTCCTGTTGCTTTC 60.439 45.833 6.38 0.00 38.67 2.62
147 148 3.445096 GGCATCATAGTTCCTGTTGCTTT 59.555 43.478 6.38 0.00 38.67 3.51
148 149 3.019564 GGCATCATAGTTCCTGTTGCTT 58.980 45.455 6.38 0.00 38.67 3.91
149 150 2.648059 GGCATCATAGTTCCTGTTGCT 58.352 47.619 6.38 0.00 38.67 3.91
150 151 1.678101 GGGCATCATAGTTCCTGTTGC 59.322 52.381 0.00 0.00 38.18 4.17
151 152 2.947652 CAGGGCATCATAGTTCCTGTTG 59.052 50.000 0.00 0.00 39.90 3.33
152 153 2.092212 CCAGGGCATCATAGTTCCTGTT 60.092 50.000 0.00 0.00 42.38 3.16
153 154 1.492176 CCAGGGCATCATAGTTCCTGT 59.508 52.381 0.00 0.00 42.38 4.00
154 155 1.816961 GCCAGGGCATCATAGTTCCTG 60.817 57.143 5.20 0.00 43.26 3.86
155 156 0.475906 GCCAGGGCATCATAGTTCCT 59.524 55.000 5.20 0.00 41.49 3.36
156 157 0.538287 GGCCAGGGCATCATAGTTCC 60.538 60.000 13.10 0.00 44.11 3.62
157 158 0.538287 GGGCCAGGGCATCATAGTTC 60.538 60.000 16.36 0.00 44.11 3.01
158 159 1.538666 GGGCCAGGGCATCATAGTT 59.461 57.895 16.36 0.00 44.11 2.24
159 160 2.822637 CGGGCCAGGGCATCATAGT 61.823 63.158 16.36 0.00 44.11 2.12
160 161 2.033141 CGGGCCAGGGCATCATAG 59.967 66.667 16.36 0.00 44.11 2.23
161 162 2.337879 GAACGGGCCAGGGCATCATA 62.338 60.000 16.36 0.00 44.11 2.15
162 163 3.721370 GAACGGGCCAGGGCATCAT 62.721 63.158 16.36 0.00 44.11 2.45
163 164 4.424711 GAACGGGCCAGGGCATCA 62.425 66.667 16.36 0.00 44.11 3.07
168 169 3.938637 GAAAGGGAACGGGCCAGGG 62.939 68.421 8.08 0.00 0.00 4.45
169 170 2.361230 GAAAGGGAACGGGCCAGG 60.361 66.667 8.08 0.00 0.00 4.45
170 171 2.746277 CGAAAGGGAACGGGCCAG 60.746 66.667 4.39 1.85 0.00 4.85
181 182 9.103653 GCAACTGCTATATTTCTCTCCGAAAGG 62.104 44.444 0.00 0.00 45.89 3.11
182 183 6.292596 GCAACTGCTATATTTCTCTCCGAAAG 60.293 42.308 0.00 0.00 40.33 2.62
183 184 5.523916 GCAACTGCTATATTTCTCTCCGAAA 59.476 40.000 0.00 0.00 40.81 3.46
184 185 5.050490 GCAACTGCTATATTTCTCTCCGAA 58.950 41.667 0.00 0.00 38.21 4.30
185 186 4.099419 TGCAACTGCTATATTTCTCTCCGA 59.901 41.667 2.95 0.00 42.66 4.55
186 187 4.210120 GTGCAACTGCTATATTTCTCTCCG 59.790 45.833 2.95 0.00 42.66 4.63
187 188 4.210120 CGTGCAACTGCTATATTTCTCTCC 59.790 45.833 2.95 0.00 42.66 3.71
188 189 4.318404 GCGTGCAACTGCTATATTTCTCTC 60.318 45.833 2.95 0.00 42.66 3.20
189 190 3.557595 GCGTGCAACTGCTATATTTCTCT 59.442 43.478 2.95 0.00 42.66 3.10
190 191 3.309682 TGCGTGCAACTGCTATATTTCTC 59.690 43.478 2.95 0.00 42.66 2.87
191 192 3.270027 TGCGTGCAACTGCTATATTTCT 58.730 40.909 2.95 0.00 42.66 2.52
192 193 3.673746 TGCGTGCAACTGCTATATTTC 57.326 42.857 2.95 0.00 42.66 2.17
193 194 4.082787 AGTTTGCGTGCAACTGCTATATTT 60.083 37.500 6.80 0.00 42.66 1.40
194 195 3.440173 AGTTTGCGTGCAACTGCTATATT 59.560 39.130 6.80 0.00 42.66 1.28
195 196 3.009723 AGTTTGCGTGCAACTGCTATAT 58.990 40.909 6.80 0.00 42.66 0.86
196 197 2.422597 AGTTTGCGTGCAACTGCTATA 58.577 42.857 6.80 0.00 42.66 1.31
197 198 1.238439 AGTTTGCGTGCAACTGCTAT 58.762 45.000 6.80 0.00 42.66 2.97
198 199 1.872388 TAGTTTGCGTGCAACTGCTA 58.128 45.000 6.80 7.53 42.66 3.49
199 200 1.197721 GATAGTTTGCGTGCAACTGCT 59.802 47.619 6.80 8.44 42.66 4.24
200 201 1.606606 GATAGTTTGCGTGCAACTGC 58.393 50.000 6.80 1.18 42.50 4.40
201 202 1.459209 TCGATAGTTTGCGTGCAACTG 59.541 47.619 6.80 0.00 35.46 3.16
202 203 1.790755 TCGATAGTTTGCGTGCAACT 58.209 45.000 6.80 10.18 35.46 3.16
203 204 2.093625 TCATCGATAGTTTGCGTGCAAC 59.906 45.455 6.80 3.20 35.46 4.17
204 205 2.342179 TCATCGATAGTTTGCGTGCAA 58.658 42.857 2.58 2.58 37.40 4.08
205 206 1.926510 CTCATCGATAGTTTGCGTGCA 59.073 47.619 0.00 0.00 37.40 4.57
206 207 1.258982 CCTCATCGATAGTTTGCGTGC 59.741 52.381 0.00 0.00 37.40 5.34
207 208 1.860950 CCCTCATCGATAGTTTGCGTG 59.139 52.381 0.00 0.00 37.40 5.34
208 209 1.806623 GCCCTCATCGATAGTTTGCGT 60.807 52.381 0.00 0.00 37.40 5.24
209 210 0.861837 GCCCTCATCGATAGTTTGCG 59.138 55.000 0.00 0.00 37.40 4.85
210 211 1.202698 AGGCCCTCATCGATAGTTTGC 60.203 52.381 0.00 0.00 37.40 3.68
211 212 2.548920 GGAGGCCCTCATCGATAGTTTG 60.549 54.545 13.90 0.00 31.08 2.93
212 213 1.694696 GGAGGCCCTCATCGATAGTTT 59.305 52.381 13.90 0.00 31.08 2.66
213 214 1.343069 GGAGGCCCTCATCGATAGTT 58.657 55.000 13.90 0.00 31.08 2.24
214 215 0.188587 TGGAGGCCCTCATCGATAGT 59.811 55.000 13.90 0.00 31.08 2.12
215 216 1.342074 TTGGAGGCCCTCATCGATAG 58.658 55.000 13.90 0.00 31.08 2.08
216 217 1.625315 CATTGGAGGCCCTCATCGATA 59.375 52.381 13.90 0.00 31.08 2.92
217 218 0.399454 CATTGGAGGCCCTCATCGAT 59.601 55.000 13.90 0.00 31.08 3.59
218 219 1.832219 CATTGGAGGCCCTCATCGA 59.168 57.895 13.90 0.00 31.08 3.59
219 220 1.895707 GCATTGGAGGCCCTCATCG 60.896 63.158 13.90 0.00 31.08 3.84
220 221 1.530183 GGCATTGGAGGCCCTCATC 60.530 63.158 13.90 0.00 45.87 2.92
221 222 2.605299 GGCATTGGAGGCCCTCAT 59.395 61.111 13.90 0.00 45.87 2.90
227 228 3.830192 CAAGGCGGCATTGGAGGC 61.830 66.667 18.82 0.00 0.00 4.70
228 229 2.361610 ACAAGGCGGCATTGGAGG 60.362 61.111 28.07 6.61 31.76 4.30
229 230 1.651240 CTGACAAGGCGGCATTGGAG 61.651 60.000 28.07 19.64 31.76 3.86
230 231 1.675310 CTGACAAGGCGGCATTGGA 60.675 57.895 28.07 14.96 31.76 3.53
231 232 2.879907 CTGACAAGGCGGCATTGG 59.120 61.111 28.07 12.57 31.76 3.16
232 233 2.180017 GCTGACAAGGCGGCATTG 59.820 61.111 24.02 24.02 39.93 2.82
233 234 3.064324 GGCTGACAAGGCGGCATT 61.064 61.111 13.08 0.00 41.95 3.56
239 240 7.740733 TTTCTGATTAAGAAGGCTGACAAGGC 61.741 42.308 0.00 0.00 45.64 4.35
240 241 4.836825 TCTGATTAAGAAGGCTGACAAGG 58.163 43.478 0.00 0.00 29.54 3.61
241 242 6.808008 TTTCTGATTAAGAAGGCTGACAAG 57.192 37.500 0.00 0.00 45.64 3.16
242 243 7.765695 AATTTCTGATTAAGAAGGCTGACAA 57.234 32.000 0.00 0.00 45.64 3.18
243 244 7.094205 GGAAATTTCTGATTAAGAAGGCTGACA 60.094 37.037 17.42 0.00 45.64 3.58
244 245 7.094205 TGGAAATTTCTGATTAAGAAGGCTGAC 60.094 37.037 17.42 0.00 45.64 3.51
245 246 6.947733 TGGAAATTTCTGATTAAGAAGGCTGA 59.052 34.615 17.42 0.00 45.64 4.26
246 247 7.031975 GTGGAAATTTCTGATTAAGAAGGCTG 58.968 38.462 17.42 0.00 45.64 4.85
247 248 6.950619 AGTGGAAATTTCTGATTAAGAAGGCT 59.049 34.615 17.42 0.00 45.64 4.58
248 249 7.031975 CAGTGGAAATTTCTGATTAAGAAGGC 58.968 38.462 17.42 0.00 45.64 4.35
249 250 7.031975 GCAGTGGAAATTTCTGATTAAGAAGG 58.968 38.462 17.42 0.00 45.64 3.46
250 251 7.754027 CAGCAGTGGAAATTTCTGATTAAGAAG 59.246 37.037 17.42 0.00 45.64 2.85
251 252 7.596494 CAGCAGTGGAAATTTCTGATTAAGAA 58.404 34.615 17.42 0.00 43.37 2.52
252 253 6.349611 GCAGCAGTGGAAATTTCTGATTAAGA 60.350 38.462 17.42 0.00 0.00 2.10
253 254 5.803967 GCAGCAGTGGAAATTTCTGATTAAG 59.196 40.000 17.42 5.46 0.00 1.85
254 255 5.243507 TGCAGCAGTGGAAATTTCTGATTAA 59.756 36.000 17.42 0.00 0.00 1.40
255 256 4.766373 TGCAGCAGTGGAAATTTCTGATTA 59.234 37.500 17.42 0.00 0.00 1.75
256 257 3.575256 TGCAGCAGTGGAAATTTCTGATT 59.425 39.130 17.42 0.00 0.00 2.57
257 258 3.159472 TGCAGCAGTGGAAATTTCTGAT 58.841 40.909 17.42 4.62 0.00 2.90
258 259 2.585330 TGCAGCAGTGGAAATTTCTGA 58.415 42.857 17.42 2.53 0.00 3.27
259 260 3.374220 TTGCAGCAGTGGAAATTTCTG 57.626 42.857 17.42 9.47 29.80 3.02
260 261 4.374399 CTTTTGCAGCAGTGGAAATTTCT 58.626 39.130 17.42 0.00 42.83 2.52
261 262 4.720530 CTTTTGCAGCAGTGGAAATTTC 57.279 40.909 9.83 9.83 42.83 2.17
278 279 9.520204 CGTTATCTTCAAATTATCCATGCTTTT 57.480 29.630 0.00 0.00 0.00 2.27
279 280 8.686334 ACGTTATCTTCAAATTATCCATGCTTT 58.314 29.630 0.00 0.00 0.00 3.51
280 281 8.225603 ACGTTATCTTCAAATTATCCATGCTT 57.774 30.769 0.00 0.00 0.00 3.91
281 282 7.807977 ACGTTATCTTCAAATTATCCATGCT 57.192 32.000 0.00 0.00 0.00 3.79
282 283 9.599322 CTAACGTTATCTTCAAATTATCCATGC 57.401 33.333 8.76 0.00 0.00 4.06
283 284 9.599322 GCTAACGTTATCTTCAAATTATCCATG 57.401 33.333 8.76 0.00 0.00 3.66
284 285 8.784043 GGCTAACGTTATCTTCAAATTATCCAT 58.216 33.333 8.76 0.00 0.00 3.41
285 286 7.771361 TGGCTAACGTTATCTTCAAATTATCCA 59.229 33.333 8.76 0.00 0.00 3.41
286 287 8.068380 GTGGCTAACGTTATCTTCAAATTATCC 58.932 37.037 8.76 0.00 0.00 2.59
287 288 8.068380 GGTGGCTAACGTTATCTTCAAATTATC 58.932 37.037 8.76 0.00 0.00 1.75
288 289 7.254658 CGGTGGCTAACGTTATCTTCAAATTAT 60.255 37.037 8.76 0.00 0.00 1.28
289 290 6.036300 CGGTGGCTAACGTTATCTTCAAATTA 59.964 38.462 8.76 0.00 0.00 1.40
290 291 5.163794 CGGTGGCTAACGTTATCTTCAAATT 60.164 40.000 8.76 0.00 0.00 1.82
291 292 4.331717 CGGTGGCTAACGTTATCTTCAAAT 59.668 41.667 8.76 0.00 0.00 2.32
292 293 3.680937 CGGTGGCTAACGTTATCTTCAAA 59.319 43.478 8.76 0.00 0.00 2.69
293 294 3.056678 TCGGTGGCTAACGTTATCTTCAA 60.057 43.478 7.59 0.00 0.00 2.69
294 295 2.492881 TCGGTGGCTAACGTTATCTTCA 59.507 45.455 7.59 2.61 0.00 3.02
295 296 3.114065 CTCGGTGGCTAACGTTATCTTC 58.886 50.000 7.59 2.59 0.00 2.87
296 297 2.737679 GCTCGGTGGCTAACGTTATCTT 60.738 50.000 7.59 0.00 0.00 2.40
297 298 1.202382 GCTCGGTGGCTAACGTTATCT 60.202 52.381 7.59 0.00 0.00 1.98
298 299 1.202382 AGCTCGGTGGCTAACGTTATC 60.202 52.381 7.59 4.36 41.16 1.75
299 300 0.822164 AGCTCGGTGGCTAACGTTAT 59.178 50.000 7.59 0.00 41.16 1.89
300 301 1.402968 CTAGCTCGGTGGCTAACGTTA 59.597 52.381 7.59 7.94 43.11 3.18
301 302 0.172803 CTAGCTCGGTGGCTAACGTT 59.827 55.000 7.59 5.88 43.11 3.99
302 303 1.664321 CCTAGCTCGGTGGCTAACGT 61.664 60.000 7.59 0.00 43.11 3.99
303 304 1.065928 CCTAGCTCGGTGGCTAACG 59.934 63.158 0.00 0.00 43.11 3.18
304 305 1.041447 TCCCTAGCTCGGTGGCTAAC 61.041 60.000 3.23 0.00 43.11 2.34
305 306 0.324923 TTCCCTAGCTCGGTGGCTAA 60.325 55.000 3.23 0.00 43.11 3.09
306 307 1.041447 GTTCCCTAGCTCGGTGGCTA 61.041 60.000 3.23 0.00 42.97 3.93
307 308 2.038975 TTCCCTAGCTCGGTGGCT 59.961 61.111 3.23 0.00 45.29 4.75
308 309 2.187163 GTTCCCTAGCTCGGTGGC 59.813 66.667 3.23 0.00 0.00 5.01
309 310 1.218316 GTGTTCCCTAGCTCGGTGG 59.782 63.158 3.23 0.00 0.00 4.61
310 311 1.218316 GGTGTTCCCTAGCTCGGTG 59.782 63.158 3.23 0.00 0.00 4.94
311 312 0.544595 AAGGTGTTCCCTAGCTCGGT 60.545 55.000 3.23 0.00 45.47 4.69
312 313 0.613777 AAAGGTGTTCCCTAGCTCGG 59.386 55.000 0.00 0.00 45.47 4.63
313 314 2.289444 TGAAAAGGTGTTCCCTAGCTCG 60.289 50.000 0.00 0.00 45.47 5.03
314 315 3.418684 TGAAAAGGTGTTCCCTAGCTC 57.581 47.619 0.00 0.00 45.47 4.09
315 316 3.876309 TTGAAAAGGTGTTCCCTAGCT 57.124 42.857 0.00 0.00 45.47 3.32
316 317 5.254115 AGTATTGAAAAGGTGTTCCCTAGC 58.746 41.667 0.00 0.00 45.47 3.42
317 318 5.581085 CGAGTATTGAAAAGGTGTTCCCTAG 59.419 44.000 0.00 0.00 45.47 3.02
318 319 5.484715 CGAGTATTGAAAAGGTGTTCCCTA 58.515 41.667 0.00 0.00 45.47 3.53
320 321 3.119955 GCGAGTATTGAAAAGGTGTTCCC 60.120 47.826 0.00 0.00 0.00 3.97
321 322 3.751698 AGCGAGTATTGAAAAGGTGTTCC 59.248 43.478 0.00 0.00 0.00 3.62
322 323 4.142881 GGAGCGAGTATTGAAAAGGTGTTC 60.143 45.833 0.00 0.00 0.00 3.18
323 324 3.751698 GGAGCGAGTATTGAAAAGGTGTT 59.248 43.478 0.00 0.00 0.00 3.32
324 325 3.335579 GGAGCGAGTATTGAAAAGGTGT 58.664 45.455 0.00 0.00 0.00 4.16
325 326 2.348666 CGGAGCGAGTATTGAAAAGGTG 59.651 50.000 0.00 0.00 0.00 4.00
326 327 2.028385 ACGGAGCGAGTATTGAAAAGGT 60.028 45.455 0.00 0.00 0.00 3.50
327 328 2.618053 ACGGAGCGAGTATTGAAAAGG 58.382 47.619 0.00 0.00 0.00 3.11
328 329 4.663636 AAACGGAGCGAGTATTGAAAAG 57.336 40.909 0.00 0.00 0.00 2.27
329 330 5.427036 AAAAACGGAGCGAGTATTGAAAA 57.573 34.783 0.00 0.00 0.00 2.29
330 331 6.730960 ATAAAAACGGAGCGAGTATTGAAA 57.269 33.333 0.00 0.00 0.00 2.69
331 332 6.730960 AATAAAAACGGAGCGAGTATTGAA 57.269 33.333 0.00 0.00 0.00 2.69
332 333 6.730960 AAATAAAAACGGAGCGAGTATTGA 57.269 33.333 0.00 0.00 0.00 2.57
333 334 9.155053 GATTAAATAAAAACGGAGCGAGTATTG 57.845 33.333 0.00 0.00 0.00 1.90
334 335 8.340443 GGATTAAATAAAAACGGAGCGAGTATT 58.660 33.333 0.00 0.00 0.00 1.89
335 336 7.306983 CGGATTAAATAAAAACGGAGCGAGTAT 60.307 37.037 0.00 0.00 0.00 2.12
336 337 6.019640 CGGATTAAATAAAAACGGAGCGAGTA 60.020 38.462 0.00 0.00 0.00 2.59
337 338 5.220529 CGGATTAAATAAAAACGGAGCGAGT 60.221 40.000 0.00 0.00 0.00 4.18
338 339 5.195379 CGGATTAAATAAAAACGGAGCGAG 58.805 41.667 0.00 0.00 0.00 5.03
339 340 4.494526 GCGGATTAAATAAAAACGGAGCGA 60.495 41.667 0.00 0.00 0.00 4.93
340 341 3.722289 GCGGATTAAATAAAAACGGAGCG 59.278 43.478 0.00 0.00 0.00 5.03
341 342 4.916870 AGCGGATTAAATAAAAACGGAGC 58.083 39.130 0.00 0.00 0.00 4.70
344 345 9.940166 ACTAATAAGCGGATTAAATAAAAACGG 57.060 29.630 0.00 0.00 0.00 4.44
350 351 9.841295 ACCAGAACTAATAAGCGGATTAAATAA 57.159 29.630 0.00 0.00 0.00 1.40
351 352 9.485206 GACCAGAACTAATAAGCGGATTAAATA 57.515 33.333 0.00 0.00 0.00 1.40
352 353 7.990886 TGACCAGAACTAATAAGCGGATTAAAT 59.009 33.333 0.00 0.00 0.00 1.40
353 354 7.332557 TGACCAGAACTAATAAGCGGATTAAA 58.667 34.615 0.00 0.00 0.00 1.52
354 355 6.880484 TGACCAGAACTAATAAGCGGATTAA 58.120 36.000 0.00 0.00 0.00 1.40
355 356 6.474140 TGACCAGAACTAATAAGCGGATTA 57.526 37.500 0.00 0.00 0.00 1.75
356 357 5.353394 TGACCAGAACTAATAAGCGGATT 57.647 39.130 0.00 0.00 0.00 3.01
357 358 5.353394 TTGACCAGAACTAATAAGCGGAT 57.647 39.130 0.00 0.00 0.00 4.18
358 359 4.811969 TTGACCAGAACTAATAAGCGGA 57.188 40.909 0.00 0.00 0.00 5.54
359 360 4.935808 ACTTTGACCAGAACTAATAAGCGG 59.064 41.667 0.00 0.00 0.00 5.52
360 361 5.637810 TGACTTTGACCAGAACTAATAAGCG 59.362 40.000 0.00 0.00 0.00 4.68
361 362 7.435068 TTGACTTTGACCAGAACTAATAAGC 57.565 36.000 0.00 0.00 0.00 3.09
362 363 7.389053 AGCTTGACTTTGACCAGAACTAATAAG 59.611 37.037 0.00 0.00 0.00 1.73
363 364 7.224297 AGCTTGACTTTGACCAGAACTAATAA 58.776 34.615 0.00 0.00 0.00 1.40
364 365 6.769512 AGCTTGACTTTGACCAGAACTAATA 58.230 36.000 0.00 0.00 0.00 0.98
365 366 5.625150 AGCTTGACTTTGACCAGAACTAAT 58.375 37.500 0.00 0.00 0.00 1.73
366 367 5.036117 AGCTTGACTTTGACCAGAACTAA 57.964 39.130 0.00 0.00 0.00 2.24
367 368 4.689612 AGCTTGACTTTGACCAGAACTA 57.310 40.909 0.00 0.00 0.00 2.24
368 369 3.567478 AGCTTGACTTTGACCAGAACT 57.433 42.857 0.00 0.00 0.00 3.01
369 370 4.639135 AAAGCTTGACTTTGACCAGAAC 57.361 40.909 0.00 0.00 47.00 3.01
379 380 6.919721 TGTCAAAGTTTACAAAGCTTGACTT 58.080 32.000 19.48 3.36 39.29 3.01
380 381 6.509418 TGTCAAAGTTTACAAAGCTTGACT 57.491 33.333 19.48 0.00 39.29 3.41
381 382 7.575332 TTTGTCAAAGTTTACAAAGCTTGAC 57.425 32.000 0.00 15.49 39.88 3.18
551 552 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
552 553 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
553 554 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
569 570 9.647797 TCTCTTCGTTTTTATTTACTCTGCATA 57.352 29.630 0.00 0.00 0.00 3.14
570 571 8.547967 TCTCTTCGTTTTTATTTACTCTGCAT 57.452 30.769 0.00 0.00 0.00 3.96
571 572 7.956420 TCTCTTCGTTTTTATTTACTCTGCA 57.044 32.000 0.00 0.00 0.00 4.41
587 588 8.936864 CCAGAAACAAATTACTATTCTCTTCGT 58.063 33.333 0.00 0.00 0.00 3.85
588 589 8.936864 ACCAGAAACAAATTACTATTCTCTTCG 58.063 33.333 0.00 0.00 0.00 3.79
593 594 9.668497 GGACTACCAGAAACAAATTACTATTCT 57.332 33.333 0.00 0.00 35.97 2.40
594 595 9.444600 TGGACTACCAGAAACAAATTACTATTC 57.555 33.333 0.00 0.00 41.77 1.75
611 612 0.840288 ATGGCACCTGTGGACTACCA 60.840 55.000 0.00 0.00 44.76 3.25
612 613 0.392998 CATGGCACCTGTGGACTACC 60.393 60.000 0.00 0.00 0.00 3.18
613 614 1.026718 GCATGGCACCTGTGGACTAC 61.027 60.000 0.00 0.00 0.00 2.73
614 615 1.299648 GCATGGCACCTGTGGACTA 59.700 57.895 0.00 0.00 0.00 2.59
615 616 2.034687 GCATGGCACCTGTGGACT 59.965 61.111 0.00 0.00 0.00 3.85
616 617 1.252904 AATGCATGGCACCTGTGGAC 61.253 55.000 0.00 0.00 43.04 4.02
617 618 0.542467 AAATGCATGGCACCTGTGGA 60.542 50.000 0.00 0.00 43.04 4.02
618 619 0.322322 AAAATGCATGGCACCTGTGG 59.678 50.000 0.00 0.00 43.04 4.17
619 620 2.492881 TCTAAAATGCATGGCACCTGTG 59.507 45.455 0.00 0.00 43.04 3.66
620 621 2.493278 GTCTAAAATGCATGGCACCTGT 59.507 45.455 0.00 0.00 43.04 4.00
621 622 2.478370 CGTCTAAAATGCATGGCACCTG 60.478 50.000 0.00 0.00 43.04 4.00
622 623 1.745087 CGTCTAAAATGCATGGCACCT 59.255 47.619 0.00 0.00 43.04 4.00
623 624 1.472480 ACGTCTAAAATGCATGGCACC 59.528 47.619 0.00 0.00 43.04 5.01
644 645 2.286559 GCACGATCGATCCACGTCG 61.287 63.158 24.34 10.91 44.29 5.12
677 678 2.711899 TAGATCCCGCACCCCCTCT 61.712 63.158 0.00 0.00 0.00 3.69
705 706 1.064758 GGAATGACACATAGGGGTGCA 60.065 52.381 0.00 0.00 42.55 4.57
924 941 2.948979 GGCGGTTATGGTTTGATGATCA 59.051 45.455 0.00 0.00 0.00 2.92
943 960 2.394563 GCACTTGAGAAGCTCCGGC 61.395 63.158 0.00 0.00 39.06 6.13
1278 1341 2.089600 TGGGGTTTTGGTTACCTTGG 57.910 50.000 2.07 0.00 35.92 3.61
1402 1554 7.652909 TCCATTGCTGTTTCTTTGTTAATTGAG 59.347 33.333 0.00 0.00 0.00 3.02
1440 1592 2.743664 CAAGGAATCGACAGCATTGACA 59.256 45.455 0.00 0.00 0.00 3.58
1441 1593 2.096496 CCAAGGAATCGACAGCATTGAC 59.904 50.000 9.16 0.00 0.00 3.18
1607 1798 2.678190 CGCAGGAACTCTAAGAAAGGGG 60.678 54.545 0.00 0.00 34.60 4.79
1613 1808 1.183549 GGGACGCAGGAACTCTAAGA 58.816 55.000 0.00 0.00 34.60 2.10
1614 1809 1.134965 CAGGGACGCAGGAACTCTAAG 60.135 57.143 0.00 0.00 34.60 2.18
1615 1810 0.895530 CAGGGACGCAGGAACTCTAA 59.104 55.000 0.00 0.00 34.60 2.10
1616 1811 1.605058 GCAGGGACGCAGGAACTCTA 61.605 60.000 0.00 0.00 34.60 2.43
1698 1904 2.854963 TCTGCAATCTGGGATATGCAC 58.145 47.619 0.00 0.00 43.32 4.57
1732 1938 5.812127 GCAAAAATGAATTCCACTGGATACC 59.188 40.000 2.27 0.00 0.00 2.73
1808 2035 5.523552 GGGCTACATTAACATTTGCATTTCC 59.476 40.000 0.00 0.00 0.00 3.13
1975 2252 6.978343 AATTACGCTTGCTTCAGTAACATA 57.022 33.333 0.00 0.00 32.76 2.29
2016 2297 2.158385 TCCTAACCAAGTGCCCACAATT 60.158 45.455 0.82 0.00 33.57 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.